TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAT2e04.yg.2.1
         (424 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR694497.1|DR694497  EST1084589 Normalized pine embryo li...   163   5e-040
gb|DR685171.1|DR685171  EST1075248 Normalized pine embryo li...   123   5e-028
gb|DT632465.1|DT632465  EST1147396 Normalized pine embryo li...   123   5e-028
gb|CX712891.1|CX712891  RTPQ1_5_B06.g1_A032 Roots treated wi...   123   7e-028
gb|DR687665.1|DR687665  EST1077747 Normalized pine embryo li...   105   2e-022

>gb|DR694497.1|DR694497 EST1084589 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PWAED30 3' end, mRNA sequence
          Length = 360

 Score =  163 bits (351), Expect = 5e-040
 Identities = 64/104 (61%), Positives = 85/104 (81%)
 Frame = +3 / +2

                                                                       
Query: 3   ATALPKAHPSFSLQQVLEMSERWKARTVPEEPIHLFIGILSATNHFAERMAIRKTWMQFP 182
           A +LP +HPSFS Q++L+MS++W+A  +PE P+ LFIGILSA NHFA RMA+R+TWM   
Sbjct: 47  AASLPVSHPSFSPQRLLDMSKKWRAPPLPEGPVDLFIGILSAGNHFANRMAVRQTWMHSK 226

                                                       
Query: 183 AIQSGNAVARFFVALSHRKEINAALKKEAEYFGDIVILPFIDRY 314
            ++S N VARFFVAL+ RKEIN  LKKEA+++GD+VI+PF+D Y
Sbjct: 227 LVRSSNVVARFFVALNARKEINLQLKKEADFYGDMVIVPFMDNY 358



>gb|DR685171.1|DR685171 EST1075248 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PWAB082 3' end, mRNA sequence
          Length = 625

 Score =  123 bits (264), Expect = 5e-028
 Identities = 45/65 (69%), Positives = 59/65 (90%)
 Frame = +3 / +2

                                                                       
Query: 225 LSHRKEINAALKKEAEYFGDIVILPFIDRYELVVLKTVAICQYGVHNVTADYIMKCDDDT 404
           ++ RKE+N  LK EA+++GDI+I+PF+DRYELVVLKTVAIC+YGV N++A Y+MKCDDDT
Sbjct: 254 MNARKEVNVQLKNEADFYGDIIIVPFMDRYELVVLKTVAICEYGVRNISAKYVMKCDDDT 433

                
Query: 405 FVRLD 419
           FVR+D
Sbjct: 434 FVRVD 448



>gb|DT632465.1|DT632465 EST1147396 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PIMFK30 3' end, mRNA sequence
          Length = 856

 Score =  123 bits (264), Expect = 5e-028
 Identities = 45/65 (69%), Positives = 59/65 (90%)
 Frame = +3 / +3

                                                                       
Query: 225 LSHRKEINAALKKEAEYFGDIVILPFIDRYELVVLKTVAICQYGVHNVTADYIMKCDDDT 404
           ++ RKE+N  LK EA+++GDI+I+PF+DRYELVVLKTVAIC+YGV N++A Y+MKCDDDT
Sbjct: 468 MNARKEVNVQLKNEADFYGDIIIVPFMDRYELVVLKTVAICEYGVRNISAKYVMKCDDDT 647

                
Query: 405 FVRLD 419
           FVR+D
Sbjct: 648 FVRVD 662



>gb|CX712891.1|CX712891 RTPQ1_5_B06.g1_A032 Roots treated with paraquat Pinus taeda cDNA
           clone RTPQ1_5_B06_A032 5', mRNA sequence
          Length = 781

 Score =  123 bits (263), Expect = 7e-028
 Identities = 47/68 (69%), Positives = 60/68 (88%)
 Frame = +3 / -1

                                                                       
Query: 216 FVALSHRKEINAALKKEAEYFGDIVILPFIDRYELVVLKTVAICQYGVHNVTADYIMKCD 395
           FVAL+ RKEIN  LKKEA+++GD+VI+PF+D YELVVLKT+AIC+YGV  ++A Y+MKCD
Sbjct: 781 FVALNARKEINLQLKKEADFYGDMVIVPFMDNYELVVLKTLAICEYGVRRLSAKYVMKCD 602

                   
Query: 396 DDTFVRLD 419
           DD FVR+D
Sbjct: 601 DDNFVRID 578



>gb|DR687665.1|DR687665 EST1077747 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PWABV16 3' end, mRNA sequence
          Length = 765

 Score =  105 bits (223), Expect = 2e-022
 Identities = 40/66 (60%), Positives = 54/66 (81%)
 Frame = +3 / +3

                                                                       
Query: 3   ATALPKAHPSFSLQQVLEMSERWKARTVPEEPIHLFIGILSATNHFAERMAIRKTWMQFP 182
           A +LP +HPSFS Q++L+MSE+W+A  +PE P+ LFIGILSA NHFA+RMA+R+TWMQ  
Sbjct: 564 AASLPVSHPSFSPQRLLDMSEKWRAPPLPEGPVDLFIGILSAGNHFADRMAVRQTWMQSK 743

                 
Query: 183 AIQSGN 200
            ++S N
Sbjct: 744 LVRSSN 761



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 258,150,220
Number of Sequences: 355925
Number of extensions: 3759991
Number of successful extensions: 85885
Number of sequences better than 1.0e-020: 5
length of database: 72,425,745
effective HSP length: 50
effective length of database: 54,629,495
effective search space used: 4916654550
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)