TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAO3g02.yg.2.1
(344 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR024659.1|DR024659 STRS1_66_C04.g1_A034 Shoot tip pitch... 78 4e-029
gb|CO164083.1|CO164083 FLD1_45_E07.g1_A029 Root flooded Pin... 78 7e-029
gb|DR089072.1|DR089072 RTAL1_6_H06.b1_A029 Roots plus added... 78 7e-029
gb|CO162866.1|CO162866 FLD1_38_A12.b1_A029 Root flooded Pin... 78 7e-029
gb|CO164233.1|CO164233 FLD1_46_E06.g1_A029 Root flooded Pin... 78 7e-029
gb|CX649258.1|CX649258 COLD1_34_C03.b1_A029 Root cold Pinus... 78 7e-029
gb|DR024599.1|DR024599 STRS1_66_C04.b1_A034 Shoot tip pitch... 78 7e-029
gb|CX649763.1|CX649763 COLD1_41_H01.b1_A029 Root cold Pinus... 78 7e-029
gb|DR089158.1|DR089158 RTAL1_6_H06.g1_A029 Roots plus added... 78 7e-029
gb|DT636926.1|DT636926 EST1151857 Normalized pine embryo li... 78 1e-028
gb|CX649335.1|CX649335 COLD1_34_C03.g1_A029 Root cold Pinus... 78 1e-027
gb|BX682737.1|BX682737 BX682737 Pinus pinaster differenciat... 74 8e-026
gb|CF397782.1|CF397782 RTDS3_1_G02.g1_A022 Drought-stressed... 74 1e-025
gb|CO170800.1|CO170800 NDL1_17_B03.b1_A029 Needles control ... 74 1e-025
gb|CF671877.1|CF671877 RTCNT1_59_H03.g1_A029 Root control P... 74 1e-025
gb|DR052202.1|DR052202 RTCA1_3_C04.b1_A029 Roots minus calc... 74 2e-025
gb|CO366452.1|CO366452 RTK1_28_A03.b1_A029 Roots minus pota... 74 2e-025
gb|DR117514.1|DR117514 RTMG1_7_A07.g1_A029 Roots minus magn... 74 2e-025
gb|CO166121.1|CO166121 FLD1_59_B03.g1_A029 Root flooded Pin... 74 2e-025
gb|DR050795.1|DR050795 RTBOR1_25_E10.g1_A029 Roots plus add... 74 2e-025
gb|CO158997.1|CO158997 FLD1_10_D08.g1_A029 Root flooded Pin... 74 2e-025
gb|CF672296.1|CF672296 RTCNT1_62_D06.g1_A029 Root control P... 74 2e-025
gb|DR091970.1|DR091970 RTAL1_25_E06.b1_A029 Roots plus adde... 74 2e-025
gb|CO197792.1|CO197792 GEO1_9_D08.b1_A029 Root gravitropism... 74 2e-025
gb|CX652526.1|CX652526 COLD1_59_E01.g1_A029 Root cold Pinus... 74 2e-025
gb|CO166717.1|CO166717 FLD1_64_B05.b1_A029 Root flooded Pin... 74 2e-025
gb|CO197932.1|CO197932 GEO1_10_D09.b1_A029 Root gravitropis... 74 2e-025
gb|DR745125.1|DR745125 RTCU1_27_E06.b1_A029 Roots plus adde... 74 2e-025
gb|BE496399.1|BE496399 NXCI_017_D12_F NXCI (Nsf Xylem Compr... 78 5e-025
gb|DR090921.1|DR090921 RTAL1_18_F03.b1_A029 Roots plus adde... 68 1e-023
gb|CO161310.1|CO161310 FLD1_28_B01.b1_A029 Root flooded Pin... 63 2e-022
gb|DR690385.1|DR690385 EST1080471 Normalized pine embryo li... 63 2e-022
gb|CO167325.1|CO167325 FLD1_68_F03.b1_A029 Root flooded Pin... 63 2e-022
gb|DR118429.1|DR118429 RTMG1_17_A03.b1_A029 Roots minus mag... 63 2e-022
gb|DR049627.1|DR049627 RTBOR1_18_A12.b1_A029 Roots plus add... 63 2e-022
gb|CF665812.1|CF665812 RTCNT1_18_D09.g1_A029 Root control P... 67 2e-022
gb|DR167996.1|DR167996 RTPHOS1_22_B11.g1_A029 Roots minus p... 63 2e-022
gb|DR117607.1|DR117607 RTMG1_8_A08.b1_A029 Roots minus magn... 63 3e-022
gb|DR742254.1|DR742254 RTCU1_2_G05.g1_A029 Roots plus added... 63 3e-022
gb|CF672967.1|CF672967 RTCNT1_75_D10.b1_A029 Root control P... 63 3e-022
gb|DR165420.1|DR165420 RTPHOS1_5_A09.b1_A029 Roots minus ph... 65 6e-022
gb|CO361729.1|CO361729 NDL2_6_E02.g1_A029 Needles control 2... 68 6e-022
gb|DR165496.1|DR165496 RTPHOS1_5_A09.g1_A029 Roots minus ph... 65 3e-021
>gb|DR024659.1|DR024659 STRS1_66_C04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_C04_A034 5', mRNA sequence
Length = 643
Score = 78.0 bits (164), Expect(2) = 4e-029
Identities = 31/51 (60%), Positives = 35/51 (68%)
Frame = +1 / +3
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST +SVLP HTIH+ CLKEM EH QFACP+CS M E+L
Sbjct: 240 YLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKL 392
Score = 68.0 bits (142), Expect(2) = 4e-029
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = +1 / +3
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ ++ +KMV ILCNDCG S+V FH++AHKCQ+ SYNTR
Sbjct: 417 MPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTR 539
>gb|CO164083.1|CO164083 FLD1_45_E07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_E07_A029 5', mRNA sequence
Length = 886
Score = 78.0 bits (164), Expect(2) = 7e-029
Identities = 31/51 (60%), Positives = 35/51 (68%)
Frame = +1 / -3
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST +SVLP HTIH+ CLKEM EH QFACP+CS M E+L
Sbjct: 722 YLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKL 570
Score = 68.0 bits (142), Expect(2) = 7e-029
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = +1 / -3
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ ++ +KMV ILCNDCG S+V FH++AHKCQ+ SYNTR
Sbjct: 545 MPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTR 423
>gb|DR089072.1|DR089072 RTAL1_6_H06.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_H06_A029 3', mRNA sequence
Length = 844
Score = 78.0 bits (164), Expect(2) = 7e-029
Identities = 31/51 (60%), Positives = 35/51 (68%)
Frame = +1 / +1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST +SVLP HTIH+ CLKEM EH QFACP+CS M E+L
Sbjct: 193 YLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKL 345
Score = 68.0 bits (142), Expect(2) = 7e-029
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = +1 / +1
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ ++ +KMV ILCNDCG S+V FH++AHKCQ+ SYNTR
Sbjct: 370 MPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTR 492
>gb|CO162866.1|CO162866 FLD1_38_A12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_38_A12_A029 3', mRNA sequence
Length = 843
Score = 78.0 bits (164), Expect(2) = 7e-029
Identities = 31/51 (60%), Positives = 35/51 (68%)
Frame = +1 / +2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST +SVLP HTIH+ CLKEM EH QFACP+CS M E+L
Sbjct: 164 YLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKL 316
Score = 68.0 bits (142), Expect(2) = 7e-029
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = +1 / +2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ ++ +KMV ILCNDCG S+V FH++AHKCQ+ SYNTR
Sbjct: 341 MPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTR 463
>gb|CO164233.1|CO164233 FLD1_46_E06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_46_E06_A029 5', mRNA sequence
Length = 843
Score = 78.0 bits (164), Expect(2) = 7e-029
Identities = 31/51 (60%), Positives = 35/51 (68%)
Frame = +1 / -1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST +SVLP HTIH+ CLKEM EH QFACP+CS M E+L
Sbjct: 720 YLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKL 568
Score = 68.0 bits (142), Expect(2) = 7e-029
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = +1 / -1
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ ++ +KMV ILCNDCG S+V FH++AHKCQ+ SYNTR
Sbjct: 543 MPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTR 421
>gb|CX649258.1|CX649258 COLD1_34_C03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_34_C03_A029 3', mRNA sequence
Length = 783
Score = 78.0 bits (164), Expect(2) = 7e-029
Identities = 31/51 (60%), Positives = 35/51 (68%)
Frame = +1 / +2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST +SVLP HTIH+ CLKEM EH QFACP+CS M E+L
Sbjct: 2 YLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKL 154
Score = 68.0 bits (142), Expect(2) = 7e-029
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = +1 / +2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ ++ +KMV ILCNDCG S+V FH++AHKCQ+ SYNTR
Sbjct: 179 MPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTR 301
>gb|DR024599.1|DR024599 STRS1_66_C04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_C04_A034 3', mRNA sequence
Length = 762
Score = 78.0 bits (164), Expect(2) = 7e-029
Identities = 31/51 (60%), Positives = 35/51 (68%)
Frame = +1 / +3
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST +SVLP HTIH+ CLKEM EH QFACP+CS M E+L
Sbjct: 84 YLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKL 236
Score = 68.0 bits (142), Expect(2) = 7e-029
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = +1 / +3
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ ++ +KMV ILCNDCG S+V FH++AHKCQ+ SYNTR
Sbjct: 261 MPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTR 383
>gb|CX649763.1|CX649763 COLD1_41_H01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_H01_A029 3', mRNA sequence
Length = 753
Score = 78.0 bits (164), Expect(2) = 7e-029
Identities = 31/51 (60%), Positives = 35/51 (68%)
Frame = +1 / -2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST +SVLP HTIH+ CLKEM EH QFACP+CS M E+L
Sbjct: 527 YLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKL 375
Score = 68.0 bits (142), Expect(2) = 7e-029
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = +1 / -2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ ++ +KMV ILCNDCG S+V FH++AHKCQ+ SYNTR
Sbjct: 350 MPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTR 228
>gb|DR089158.1|DR089158 RTAL1_6_H06.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_H06_A029 5', mRNA sequence
Length = 749
Score = 78.0 bits (164), Expect(2) = 7e-029
Identities = 31/51 (60%), Positives = 35/51 (68%)
Frame = +1 / +2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST +SVLP HTIH+ CLKEM EH QFACP+CS M E+L
Sbjct: 362 YLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKL 514
Score = 68.0 bits (142), Expect(2) = 7e-029
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = +1 / +2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ ++ +KMV ILCNDCG S+V FH++AHKCQ+ SYNTR
Sbjct: 539 MPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTR 661
>gb|DT636926.1|DT636926 EST1151857 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGX65 3' end, mRNA sequence
Length = 844
Score = 78.0 bits (164), Expect(2) = 1e-028
Identities = 31/51 (60%), Positives = 35/51 (68%)
Frame = +1 / +3
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST +SVLP HTIH+ CLKEM EH QFACP+CS M E+L
Sbjct: 429 YLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKL 581
Score = 67.0 bits (140), Expect(2) = 1e-028
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +1 / +3
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+KMV ILCNDCG S+V FH++AHKCQ+ SYNTR
Sbjct: 624 NKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTR 728
>gb|CX649335.1|CX649335 COLD1_34_C03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_34_C03_A029 5', mRNA sequence
Length = 699
Score = 78.0 bits (164), Expect(2) = 1e-027
Identities = 31/51 (60%), Positives = 35/51 (68%)
Frame = +1 / +1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST +SVLP HTIH+ CLKEM EH QFACP+CS M E+L
Sbjct: 406 YLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKL 558
Score = 63.4 bits (132), Expect(2) = 1e-027
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +1 / +1
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYN 303
+ ++ +KMV ILCNDCG S+V FH++AHKCQ+ SYN
Sbjct: 583 MPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYN 699
>gb|BX682737.1|BX682737 BX682737 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 121A02, mRNA sequence
Length = 504
Score = 74.4 bits (156), Expect(2) = 8e-026
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1 / +2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF+ST D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 77 FLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 229
Score = 60.2 bits (125), Expect(2) = 8e-026
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / +2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 254 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 376
>gb|CF397782.1|CF397782 RTDS3_1_G02.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_1_G02_A022 5', mRNA sequence
Length = 581
Score = 74.4 bits (156), Expect(2) = 1e-025
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1 / +3
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF+ST D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 48 FLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 200
Score = 60.2 bits (125), Expect(2) = 1e-025
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / +3
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 225 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 347
>gb|CO170800.1|CO170800 NDL1_17_B03.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_17_B03_A029 3', mRNA sequence
Length = 661
Score = 74.4 bits (156), Expect(2) = 1e-025
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1 / -2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF+ST D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 537 FLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 385
Score = 60.2 bits (125), Expect(2) = 1e-025
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / -2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 360 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 238
>gb|CF671877.1|CF671877 RTCNT1_59_H03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_59_H03_A029 5', mRNA sequence
Length = 696
Score = 74.4 bits (156), Expect(2) = 1e-025
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1 / +2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF+ST D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 116 FLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 268
Score = 60.2 bits (125), Expect(2) = 1e-025
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / +2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 293 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 415
>gb|DR052202.1|DR052202 RTCA1_3_C04.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_3_C04_A029 3', mRNA sequence
Length = 868
Score = 74.4 bits (156), Expect(2) = 2e-025
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1 / +1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF+ST D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 163 FLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 315
Score = 60.2 bits (125), Expect(2) = 2e-025
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / +1
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 340 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 462
>gb|CO366452.1|CO366452 RTK1_28_A03.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_28_A03_A029 3', mRNA sequence
Length = 865
Score = 74.4 bits (156), Expect(2) = 2e-025
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1 / +2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF+ST D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 77 FLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 229
Score = 60.2 bits (125), Expect(2) = 2e-025
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / +2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 254 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 376
>gb|DR117514.1|DR117514 RTMG1_7_A07.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_A07_A029 5', mRNA sequence
Length = 860
Score = 74.4 bits (156), Expect(2) = 2e-025
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1 / +2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF+ST D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 191 FLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 343
Score = 60.2 bits (125), Expect(2) = 2e-025
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / +2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 368 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 490
>gb|CO166121.1|CO166121 FLD1_59_B03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_B03_A029 5', mRNA sequence
Length = 835
Score = 74.4 bits (156), Expect(2) = 2e-025
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1 / +1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF+ST D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 307 FLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 459
Score = 60.2 bits (125), Expect(2) = 2e-025
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / +1
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 484 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 606
>gb|DR050795.1|DR050795 RTBOR1_25_E10.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_E10_A029 5', mRNA sequence
Length = 833
Score = 74.4 bits (156), Expect(2) = 2e-025
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1 / +2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF+ST D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 227 FLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 379
Score = 60.2 bits (125), Expect(2) = 2e-025
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / +2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 404 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 526
>gb|CO158997.1|CO158997 FLD1_10_D08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_D08_A029 5', mRNA sequence
Length = 794
Score = 74.4 bits (156), Expect(2) = 2e-025
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1 / +3
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF+ST D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 18 FLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 170
Score = 60.2 bits (125), Expect(2) = 2e-025
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / +3
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 195 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 317
>gb|CF672296.1|CF672296 RTCNT1_62_D06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_62_D06_A029 5', mRNA sequence
Length = 765
Score = 74.4 bits (156), Expect(2) = 2e-025
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1 / +1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF+ST D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 163 FLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 315
Score = 60.2 bits (125), Expect(2) = 2e-025
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / +1
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 340 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 462
>gb|DR091970.1|DR091970 RTAL1_25_E06.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_25_E06_A029 3', mRNA sequence
Length = 756
Score = 74.4 bits (156), Expect(2) = 2e-025
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1 / +1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF+ST D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 10 FLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 162
Score = 60.2 bits (125), Expect(2) = 2e-025
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / +1
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 187 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 309
>gb|CO197792.1|CO197792 GEO1_9_D08.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_9_D08_A029 3', mRNA sequence
Length = 747
Score = 74.4 bits (156), Expect(2) = 2e-025
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1 / -2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF+ST D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 620 FLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 468
Score = 60.2 bits (125), Expect(2) = 2e-025
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / -2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 443 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 321
>gb|CX652526.1|CX652526 COLD1_59_E01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_59_E01_A029 5', mRNA sequence
Length = 741
Score = 74.4 bits (156), Expect(2) = 2e-025
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1 / +2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF+ST D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 149 FLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 301
Score = 60.2 bits (125), Expect(2) = 2e-025
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / +2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 326 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 448
>gb|CO166717.1|CO166717 FLD1_64_B05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_64_B05_A029 3', mRNA sequence
Length = 737
Score = 74.4 bits (156), Expect(2) = 2e-025
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1 / -3
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF+ST D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 687 FLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 535
Score = 60.2 bits (125), Expect(2) = 2e-025
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / -3
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 510 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 388
>gb|CO197932.1|CO197932 GEO1_10_D09.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_10_D09_A029 3', mRNA sequence
Length = 733
Score = 74.4 bits (156), Expect(2) = 2e-025
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1 / -2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF+ST D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 528 FLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 376
Score = 60.2 bits (125), Expect(2) = 2e-025
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / -2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 351 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 229
>gb|DR745125.1|DR745125 RTCU1_27_E06.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_27_E06_A029 3', mRNA sequence
Length = 707
Score = 74.4 bits (156), Expect(2) = 2e-025
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1 / -2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF+ST D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 556 FLFESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 404
Score = 60.2 bits (125), Expect(2) = 2e-025
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / -2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 379 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 257
>gb|BE496399.1|BE496399 NXCI_017_D12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_017_D12 5' similar to Arabidopsis
thaliana sequence At5g22920 PGPD14 protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 575
Score = 78.0 bits (164), Expect(2) = 5e-025
Identities = 31/51 (60%), Positives = 35/51 (68%)
Frame = +1 / +1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDST +SVLP HTIH+ CLKEM EH QFACP+CS M E+L
Sbjct: 286 YLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKL 438
Score = 54.2 bits (112), Expect(2) = 5e-025
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = +1 / +1
Query: 208 KMVRILCNDCGAISDVQFHLIAHKCQNXXS 297
KMV ILCNDCG S+V FH+ AHKCQ+ S
Sbjct: 484 KMVWILCNDCGVTSEVNFHIXAHKCQSCNS 573
>gb|DR090921.1|DR090921 RTAL1_18_F03.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_18_F03_A029 3', mRNA sequence
Length = 795
Score = 68.4 bits (143), Expect(2) = 1e-023
Identities = 25/48 (52%), Positives = 33/48 (68%)
Frame = +1 / +2
Query: 25 DSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+ST D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 2 ESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 145
Score = 60.2 bits (125), Expect(2) = 1e-023
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / +2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 170 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 292
>gb|CO161310.1|CO161310 FLD1_28_B01.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_28_B01_A029 3', mRNA sequence
Length = 916
Score = 62.9 bits (131), Expect(2) = 2e-022
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +1 / -2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDS +SVL HT+H +CL EM++H Q++CP+CS M E+L
Sbjct: 519 YLFDSLKAISVLRCGHTMHGECLTEMKKHSQYSCPMCSKSVCDMSIIWEQL 367
Score = 61.6 bits (128), Expect(2) = 2e-022
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +1 / -2
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+KMV ILCNDC S+VQFH++A KC N SYNTR
Sbjct: 324 NKMVWILCNDCDMFSEVQFHIVAQKCLNCKSYNTR 220
>gb|DR690385.1|DR690385 EST1080471 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACU46 3' end, mRNA sequence
Length = 912
Score = 62.9 bits (131), Expect(2) = 2e-022
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +1 / +1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDS +SVL HT+H +CL EM++H Q++CP+CS M E+L
Sbjct: 610 YLFDSLKAISVLRCGHTMHGECLTEMKKHSQYSCPMCSKSVCDMSIIWEQL 762
Score = 61.6 bits (128), Expect(2) = 2e-022
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +1 / +1
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+KMV ILCNDC S+VQFH++A KC N SYNTR
Sbjct: 805 NKMVWILCNDCDMFSEVQFHIVAQKCLNCNSYNTR 909
>gb|CO167325.1|CO167325 FLD1_68_F03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_68_F03_A029 3', mRNA sequence
Length = 854
Score = 62.9 bits (131), Expect(2) = 2e-022
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +1 / +1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDS +SVL HT+H +CL EM++H Q++CP+CS M E+L
Sbjct: 163 YLFDSLKAISVLRCGHTMHGECLTEMKKHSQYSCPMCSKSVCDMSIIWEQL 315
Score = 61.6 bits (128), Expect(2) = 2e-022
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +1 / +1
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+KMV ILCNDC S+VQFH++A KC N SYNTR
Sbjct: 358 NKMVWILCNDCDMFSEVQFHIVAQKCLNCKSYNTR 462
>gb|DR118429.1|DR118429 RTMG1_17_A03.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_17_A03_A029 3', mRNA sequence
Length = 786
Score = 62.9 bits (131), Expect(2) = 2e-022
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +1 / +2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDS +SVL HT+H +CL EM++H Q++CP+CS M E+L
Sbjct: 95 YLFDSLKAISVLRCGHTMHGECLTEMKKHSQYSCPMCSKSVCDMSIIWEQL 247
Score = 61.6 bits (128), Expect(2) = 2e-022
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +1 / +2
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+KMV ILCNDC S+VQFH++A KC N SYNTR
Sbjct: 290 NKMVWILCNDCDMFSEVQFHIVAQKCLNCKSYNTR 394
>gb|DR049627.1|DR049627 RTBOR1_18_A12.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_18_A12_A029 3', mRNA sequence
Length = 778
Score = 62.9 bits (131), Expect(2) = 2e-022
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +1 / +2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDS +SVL HT+H +CL EM++H Q++CP+CS M E+L
Sbjct: 44 YLFDSLKAISVLRCGHTMHGECLTEMKKHSQYSCPMCSKSVCDMSIIWEQL 196
Score = 61.6 bits (128), Expect(2) = 2e-022
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +1 / +2
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+KMV ILCNDC S+VQFH++A KC N SYNTR
Sbjct: 239 NKMVWILCNDCDMFSEVQFHIVAQKCLNCNSYNTR 343
>gb|CF665812.1|CF665812 RTCNT1_18_D09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_18_D09_A029 5', mRNA sequence
Length = 552
Score = 67.0 bits (140), Expect(2) = 2e-022
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +1 / -3
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+KMV ILCNDCG S+V FH++AHKCQ+ SYNTR
Sbjct: 388 NKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTR 284
Score = 56.5 bits (117), Expect(2) = 2e-022
Identities = 22/40 (55%), Positives = 25/40 (62%)
Frame = +1 / -3
Query: 49 LPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
LP HTIH+ C KEM EH QFACP+CS M E+L
Sbjct: 550 LPCGHTIHMHC*KEMHEHLQFACPVCSKSVCDMSKLWEKL 431
>gb|DR167996.1|DR167996 RTPHOS1_22_B11.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_22_B11_A029 5', mRNA sequence
Length = 570
Score = 63.4 bits (132), Expect(2) = 2e-022
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +1 / +1
Query: 37 DVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 16 DINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 147
Score = 60.2 bits (125), Expect(2) = 2e-022
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / +1
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 172 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 294
>gb|DR117607.1|DR117607 RTMG1_8_A08.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_8_A08_A029 3', mRNA sequence
Length = 873
Score = 63.4 bits (132), Expect(2) = 3e-022
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +1 / -2
Query: 37 DVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 869 DINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 738
Score = 60.2 bits (125), Expect(2) = 3e-022
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / -2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 713 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 591
>gb|DR742254.1|DR742254 RTCU1_2_G05.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_2_G05_A029 5', mRNA sequence
Length = 756
Score = 63.4 bits (132), Expect(2) = 3e-022
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +1 / +1
Query: 37 DVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 4 DINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 135
Score = 60.2 bits (125), Expect(2) = 3e-022
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / +1
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 160 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 282
>gb|CF672967.1|CF672967 RTCNT1_75_D10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_75_D10_A029 3', mRNA sequence
Length = 709
Score = 63.4 bits (132), Expect(2) = 3e-022
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +1 / +3
Query: 37 DVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
D++VLP HTIH+ CLKEM++H QF CP+CS M E+L
Sbjct: 3 DINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKL 134
Score = 60.2 bits (125), Expect(2) = 3e-022
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1 / +3
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ +S +K + ILCNDC A S+V FH++A KC N SYNTR
Sbjct: 159 MPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTR 281
>gb|DR165420.1|DR165420 RTPHOS1_5_A09.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_5_A09_A029 3', mRNA sequence
Length = 859
Score = 64.8 bits (135), Expect(2) = 6e-022
Identities = 25/51 (49%), Positives = 33/51 (64%)
Frame = +1 / +1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDS +SVL HT+H +CL EM+EH Q++CP+CS M E+L
Sbjct: 256 YLFDSLKAISVLRCGHTMHGECLTEMKEHSQYSCPMCSKSVCDMSIIWEQL 408
Score = 57.9 bits (120), Expect(2) = 6e-022
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +1 / +1
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+KMV ILCNDC S+VQFH++A KC SYNTR
Sbjct: 451 NKMVWILCNDCDMFSEVQFHIVAQKCLYCKSYNTR 555
>gb|CO361729.1|CO361729 NDL2_6_E02.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_E02_A029 5', mRNA sequence
Length = 777
Score = 68.4 bits (143), Expect(2) = 6e-022
Identities = 27/63 (42%), Positives = 37/63 (58%)
Frame = +1 / +2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERLXXXXXXLSD 195
YLFDS +SVL HT+H +CL EM++H Q++CP+CS M E+L L +
Sbjct: 521 YLFDSLKAISVLRCGHTMHGECLTEMKKHSQYSCPMCSKSVCDMSIIWEQLDQEVWILCN 700
Query: 196 SCD 204
CD
Sbjct: 701 DCD 709
Score = 54.2 bits (112), Expect(2) = 6e-022
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +1 / +2
Query: 214 VRILCNDCGAISDVQFHLIAHKCQNXXSYNT 306
V ILCNDC S+VQFH++A KC N SYNT
Sbjct: 683 VWILCNDCDMFSEVQFHIVAQKCLNCKSYNT 775
>gb|DR165496.1|DR165496 RTPHOS1_5_A09.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_5_A09_A029 5', mRNA sequence
Length = 830
Score = 64.8 bits (135), Expect(2) = 3e-021
Identities = 25/51 (49%), Positives = 33/51 (64%)
Frame = +1 / +1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
YLFDS +SVL HT+H +CL EM+EH Q++CP+CS M E+L
Sbjct: 532 YLFDSLKAISVLRCGHTMHGECLTEMKEHSQYSCPMCSKSVCDMSIIWEQL 684
Score = 55.6 bits (115), Expect(2) = 3e-021
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +1 / +1
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNT 306
+KMV ILCNDC S+VQFH++A KC SYNT
Sbjct: 727 NKMVWILCNDCDMFSEVQFHIVAQKCLYCKSYNT 828
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 150,112,531
Number of Sequences: 355925
Number of extensions: 1528622
Number of successful extensions: 68901
Number of sequences better than 1.0e-020: 48
length of database: 72,425,745
effective HSP length: 49
effective length of database: 54,985,420
effective search space used: 3574052300
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)