TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAN24c09.yg.2.1
(425 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo li... 182 1e-045
gb|DT633819.1|DT633819 EST1148750 Normalized pine embryo li... 182 1e-045
gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo li... 172 9e-043
gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo li... 172 9e-043
gb|BF610475.1|BF610475 NXSI_058_H08_F NXSI (Nsf Xylem Side ... 150 2e-038
gb|BX784298.1|BX784298 BX784298 Pinus pinaster differenciat... 158 2e-038
gb|BX250234.1|BX250234 BX250234 Pinus pinaster differenciat... 155 2e-037
gb|BG673833.1|BG673833 NXPV_075_F11_F NXPV (Nsf Xylem Plani... 155 2e-037
gb|CF390276.1|CF390276 RTDR2_18_A03.g1_A021 Loblolly pine r... 155 2e-037
gb|AY639654.1| Pinus radiata cellulose synthase catalytic s... 155 2e-037
gb|AY789652.1| Pinus taeda cellulose synthase catalytic sub... 155 2e-037
gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mR... 154 4e-037
gb|BX249614.1|BX249614 BX249614 Pinus pinaster differenciat... 153 6e-037
gb|BX254022.1|BX254022 BX254022 Pinus pinaster differenciat... 153 6e-037
gb|BQ702504.1|BQ702504 NXSI_129_D04_F NXSI (Nsf Xylem Side ... 153 6e-037
gb|CF666095.1|CF666095 RTCNT1_20_E07.g1_A029 Root control P... 153 6e-037
gb|CO169549.1|CO169549 NDL1_7_F09.g1_A029 Needles control P... 153 6e-037
gb|CX646526.1|CX646526 COLD1_9_H07.g1_A029 Root cold Pinus ... 153 6e-037
gb|DR054410.1|DR054410 RTCA1_17_D10.b1_A029 Roots minus cal... 153 6e-037
gb|AY789650.1| Pinus taeda cellulose synthase catalytic sub... 153 6e-037
gb|AY262815.1| Pinus radiata cellulose synthase (CesA3) mRN... 153 6e-037
dbj|BD236020.1| Materials and method for modification of pl... 152 1e-036
gb|BF221043.1|BF221043 NXCI_162_E11_F NXCI (Nsf Xylem Compr... 151 2e-036
gb|AI812887.1|AI812887 22B3 Pine Lambda Zap Xylem library P... 150 5e-036
gb|AW698053.1|AW698053 NXNV_072_F12_F Nsf Xylem Normal wood... 150 5e-036
gb|BE209203.1|BE209203 NXNV_147_C08_F Nsf Xylem Normal wood... 150 5e-036
gb|CF478399.1|CF478399 RTWW3_18_G11.g1_A022 Well-watered lo... 150 5e-036
gb|CO168623.1|CO168623 NDL1_1_A02.g1_A029 Needles control P... 150 5e-036
gb|CV031645.1|CV031645 RTNACL1_2_G07.g1_A029 Roots plus add... 150 5e-036
gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRN... 150 5e-036
gb|BG039408.1|BG039408 NXSI_098_F10_F NXSI (Nsf Xylem Side ... 147 3e-035
gb|BQ702475.1|BQ702475 NXSI_129_A10_F NXSI (Nsf Xylem Side ... 147 3e-035
gb|DR017506.1|DR017506 STRS1_16_E10.g1_A034 Shoot tip pitch... 144 2e-034
gb|CF478017.1|CF478017 RTWW3_17_B06.g1_A022 Well-watered lo... 144 4e-034
gb|AW289623.1|AW289623 NXNV003H02F Nsf Xylem Normal wood Ve... 142 1e-033
gb|CD028231.1|CD028231 NXNV003H02 Nsf Xylem Normal wood Ver... 142 1e-033
gb|DR110657.1|DR110657 RTS1_12_E03.b1_A029 Roots minus sulf... 142 2e-033
gb|AY789651.1| Pinus taeda cellulose synthase catalytic sub... 142 2e-033
gb|AY262814.1| Pinus radiata cellulose synthase (CesA11) mR... 142 2e-033
gb|AY262816.1| Pinus radiata cellulose synthase (CesA5) mRN... 142 2e-033
gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRN... 142 2e-033
gb|AY262819.1| Pinus radiata cellulose synthase (CesA8) mRN... 142 2e-033
gb|DR110744.1|DR110744 RTS1_12_E03.g1_A029 Roots minus sulf... 139 2e-033
gb|BX250396.1|BX250396 BX250396 Pinus pinaster differenciat... 141 3e-033
gb|BX255542.1|BX255542 BX255542 Pinus pinaster differenciat... 141 3e-033
gb|DR017425.1|DR017425 STRS1_16_E10.b1_A034 Shoot tip pitch... 140 4e-033
gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRN... 140 4e-033
gb|CO369260.1|CO369260 RTK1_46_B01.b1_A029 Roots minus pota... 137 5e-032
gb|CF396363.1|CF396363 RTDS2_21_F06.g1_A021 Drought-stresse... 136 7e-032
gb|DR118589.1|DR118589 RTMG1_18_A07.b1_A029 Roots minus mag... 135 2e-031
gb|BF609760.1|BF609760 NXSI_050_B03_F NXSI (Nsf Xylem Side ... 133 5e-031
gb|CO369942.1|CO369942 RTK1_55_A04.g1_A029 Roots minus pota... 132 1e-030
gb|DR020730.1|DR020730 STRS1_38_H10.g1_A034 Shoot tip pitch... 127 3e-029
gb|CO369344.1|CO369344 RTK1_46_B01.g1_A029 Roots minus pota... 124 3e-028
gb|BQ196805.1|BQ196805 NXLV105_E07_F NXLV (Nsf Xylem Late w... 123 5e-028
gb|BE520100.1|BE520100 NXCI_016_G11_F NXCI (Nsf Xylem Compr... 121 3e-027
gb|AW011234.1|AW011234 ST18D02 Pine TriplEx shoot tip libra... 109 1e-026
gb|BF610381.1|BF610381 NXSI_049_H06_F NXSI (Nsf Xylem Side ... 101 1e-026
gb|BF010934.1|BF010934 NXCI_094_H06_F NXCI (Nsf Xylem Compr... 118 2e-026
gb|BF220717.1|BF220717 NXCI_149_G02_F NXCI (Nsf Xylem Compr... 118 2e-026
gb|DR689610.1|DR689610 EST1079696 Normalized pine embryo li... 117 3e-026
gb|DT635390.1|DT635390 EST1150321 Normalized pine embryo li... 117 3e-026
gb|BE656835.1|BE656835 NXCI_040_B06_F NXCI (Nsf Xylem Compr... 113 8e-025
gb|BX252761.1|BX252761 BX252761 Pinus pinaster differenciat... 110 5e-024
gb|BE431393.1|BE431393 NXNV_181_F12_F Nsf Xylem Normal wood... 110 5e-024
gb|DR100267.1|DR100267 STRR1_62_H11.g1_A033 Stem Response R... 103 2e-022
gb|BE457983.1|BE457983 NXCI_008_H12_F NXCI (Nsf Xylem Compr... 104 3e-022
gb|DR160218.1|DR160218 RTFE1_4_D09.g1_A029 Roots minus iron... 103 4e-022
gb|DR683559.1|DR683559 EST1073635 Normalized pine embryo li... 104 4e-022
gb|DR690019.1|DR690019 EST1080105 Normalized pine embryo li... 104 4e-022
gb|DT631440.1|DT631440 EST1146371 Normalized pine embryo li... 104 4e-022
gb|AW290647.1|AW290647 NXNV044E04F Nsf Xylem Normal wood Ve... 103 6e-022
gb|CD027309.1|CD027309 NXNV044E04 Nsf Xylem Normal wood Ver... 103 6e-022
gb|BQ291066.1|BQ291066 NXRV055_C03_F NXRV (Nsf Xylem Root w... 102 1e-021
>gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABM78 3' end, mRNA sequence
Length = 740
Score = 182 bits (392), Expect = 1e-045
Identities = 72/102 (70%), Positives = 84/102 (82%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F + +L+N+ASLWF++LFICIF T IL MRWSGV IDDWWRNEQFWV
Sbjct: 78 YCTLPAICLLTGKFIIPELSNIASLWFLALFICIFTTGILEMRWSGVPIDDWWRNEQFWV 257
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+HLFAVFQGLL V+AGVDT+ T TSK GDDD+FSELY
Sbjct: 258 IGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKAGDDDDFSELY 383
Score = 112 bits (239), Expect(2) = 4e-027
Identities = 49/84 (58%), Positives = 53/84 (63%)
Frame = -1 / -2
Query: 404 YXXXXXXXXXPFDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHL 225
Y FDV V VSTPA T +P TA +C DTPP+TQNCSFLHQSSI TPLH
Sbjct: 382 YSSEKSSSSPAFDVTVKFVSTPARTFNNPWKTANKCADTPPITQNCSFLHQSSIGTPLHR 203
Query: 224 IXRMLVAKMQIKSDMNHRLATLFS 153
I RM V K+QIK N RLA L S
Sbjct: 202 ISRMPVVKIQIKRARNQRLAILLS 131
Score = 28.1 bits (55), Expect(2) = 4e-027
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = -1 / -2
Query: 50 TSGVINFPVNKQMAG 6
+SG++NFPV+K +AG
Sbjct: 133 SSGIMNFPVSKHIAG 89
>gb|DT633819.1|DT633819 EST1148750 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFZ11 3' end, mRNA sequence
Length = 688
Score = 182 bits (392), Expect = 1e-045
Identities = 72/102 (70%), Positives = 84/102 (82%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F + +L+N+ASLWF++LFICIF T IL MRWSGV IDDWWRNEQFWV
Sbjct: 86 YCTLPAICLLTGKFIIPELSNIASLWFLALFICIFTTGILEMRWSGVPIDDWWRNEQFWV 265
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+HLFAVFQGLL V+AGVDT+ T TSK GDDD+FSELY
Sbjct: 266 IGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKAGDDDDFSELY 391
Score = 112 bits (239), Expect(2) = 4e-027
Identities = 49/84 (58%), Positives = 53/84 (63%)
Frame = -1 / -2
Query: 404 YXXXXXXXXXPFDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHL 225
Y FDV V VSTPA T +P TA +C DTPP+TQNCSFLHQSSI TPLH
Sbjct: 390 YSSEKSSSSPAFDVTVKFVSTPARTFNNPWKTANKCADTPPITQNCSFLHQSSIGTPLHR 211
Query: 224 IXRMLVAKMQIKSDMNHRLATLFS 153
I RM V K+QIK N RLA L S
Sbjct: 210 ISRMPVVKIQIKRARNQRLAILLS 139
Score = 28.1 bits (55), Expect(2) = 4e-027
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = -1 / -2
Query: 50 TSGVINFPVNKQMAG 6
+SG++NFPV+K +AG
Sbjct: 141 SSGIMNFPVSKHIAG 97
>gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAY38 3' end, mRNA sequence
Length = 859
Score = 172 bits (371), Expect = 9e-043
Identities = 69/93 (74%), Positives = 79/93 (84%)
Frame = +1 / +1
Query: 127 LCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLF 306
L F + +L+N+ASLWF++LFICIF T IL MRWSGV IDD WRNEQFWVIGGVS+HLF
Sbjct: 10 LTGKFIIPELSNIASLWFLALFICIFTTGILEMRWSGVPIDDRWRNEQFWVIGGVSAHLF 189
Query: 307 AVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
AVFQGLL V+AGVDT+ T TSK GDDD+FSELY
Sbjct: 190 AVFQGLLKVLAGVDTNFTVTSKAGDDDDFSELY 288
Score = 109 bits (232), Expect(2) = 1e-024
Identities = 48/84 (57%), Positives = 52/84 (61%)
Frame = -1 / -3
Query: 404 YXXXXXXXXXPFDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHL 225
Y FDV V VSTPA T +P TA +C DTPP+TQNCSFLH SSI TPLH
Sbjct: 287 YSSEKSSSSPAFDVTVKFVSTPARTFNNPWKTANKCADTPPITQNCSFLHLSSIGTPLHR 108
Query: 224 IXRMLVAKMQIKSDMNHRLATLFS 153
I RM V K+QIK N RLA L S
Sbjct: 107 ISRMPVVKIQIKRARNQRLAILLS 36
Score = 23.1 bits (44), Expect(2) = 1e-024
Identities = 7/11 (63%), Positives = 11/11 (100%)
Frame = -1 / -3
Query: 50 TSGVINFPVNK 18
+SG++NFPV+K
Sbjct: 38 SSGIMNFPVSK 6
>gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFL85 3' end, mRNA sequence
Length = 771
Score = 172 bits (371), Expect = 9e-043
Identities = 69/93 (74%), Positives = 79/93 (84%)
Frame = +1 / +3
Query: 127 LCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLF 306
L F + +L+N+ASLWF++LFICIF T IL MRWSGV IDD WRNEQFWVIGGVS+HLF
Sbjct: 18 LTGKFIIPELSNIASLWFLALFICIFTTGILEMRWSGVPIDDRWRNEQFWVIGGVSAHLF 197
Query: 307 AVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
AVFQGLL V+AGVDT+ T TSK GDDD+FSELY
Sbjct: 198 AVFQGLLKVLAGVDTNFTVTSKAGDDDDFSELY 296
Score = 109 bits (232), Expect(2) = 8e-025
Identities = 48/84 (57%), Positives = 52/84 (61%)
Frame = -1 / -3
Query: 404 YXXXXXXXXXPFDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHL 225
Y FDV V VSTPA T +P TA +C DTPP+TQNCSFLH SSI TPLH
Sbjct: 295 YSSEKSSSSPAFDVTVKFVSTPARTFNNPWKTANKCADTPPITQNCSFLHLSSIGTPLHR 116
Query: 224 IXRMLVAKMQIKSDMNHRLATLFS 153
I RM V K+QIK N RLA L S
Sbjct: 115 ISRMPVVKIQIKRARNQRLAILLS 44
Score = 23.5 bits (45), Expect(2) = 8e-025
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = -1 / -3
Query: 50 TSGVINFPVNKQM 12
+SG++NFPV+K +
Sbjct: 46 SSGIMNFPVSKHI 8
>gb|BF610475.1|BF610475 NXSI_058_H08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_058_H08 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 378
Score = 150 bits (322), Expect(2) = 2e-038
Identities = 57/89 (64%), Positives = 72/89 (80%)
Frame = +1 / +3
Query: 139 FHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQ 318
F + L+N+AS++FM LFI I T +L +RWSGV I++WWRNEQFWVIGGVS+H FAVFQ
Sbjct: 27 FIIPTLSNLASIYFMLLFISIIVTGVLELRWSGVSIEEWWRNEQFWVIGGVSAHFFAVFQ 206
Query: 319 GLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
GLL V+AG+DT+ T T+K DD+EF ELY
Sbjct: 207 GLLKVLAGIDTNFTVTAKASDDNEFGELY 293
Score = 27.2 bits (53), Expect(2) = 2e-038
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1 / +3
Query: 10 AICLLTGKFITP 45
AICLLTG+FI P
Sbjct: 3 AICLLTGEFIIP 38
>gb|BX784298.1|BX784298 BX784298 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 132B11 similar to Cellulose synthase, mRNA
sequence
Length = 540
Score = 158 bits (339), Expect = 2e-038
Identities = 60/76 (78%), Positives = 68/76 (89%)
Frame = +1 / +1
Query: 181 MSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIAGVDTSXT 360
++LF+CI T +L MRWSGVGIDDWWRNEQFWVIGGVS+HLFA+FQGLL V+AGVDT+ T
Sbjct: 1 IALFVCIITTGVLEMRWSGVGIDDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGVDTNFT 180
Query: 361 XTSKGGDDDEFSELYL 408
TSKGGDD EFSELYL
Sbjct: 181 VTSKGGDDGEFSELYL 228
>gb|BX250234.1|BX250234 BX250234 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP034A11, mRNA sequence
Length = 689
Score = 155 bits (333), Expect = 2e-037
Identities = 63/102 (61%), Positives = 77/102 (75%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L V L F + Q++ ASL+F++LFI IFAT IL MRWSGV I++WWRNEQFWV
Sbjct: 307 YCTLPAVSLLTGKFVIPQISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWV 486
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+H FAV QGLL V+AG+DT+ T T+K DD EF ELY
Sbjct: 487 IGGVSAHFFAVIQGLLKVLAGIDTNFTVTAKASDDGEFGELY 612
>gb|BG673833.1|BG673833 NXPV_075_F11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_075_F11 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 439
Score = 155 bits (333), Expect = 2e-037
Identities = 63/102 (61%), Positives = 77/102 (75%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L V L F + Q++ ASL+F++LFI IFAT IL MRWSGV I++WWRNEQFWV
Sbjct: 20 YCTLPAVSLLTGKFVIPQISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWV 199
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+H FAV QGLL V+AG+DT+ T T+K DD EF ELY
Sbjct: 200 IGGVSAHFFAVIQGLLKVLAGIDTNFTVTAKASDDGEFGELY 325
>gb|CF390276.1|CF390276 RTDR2_18_A03.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_18_A03_A021 5', mRNA
sequence
Length = 465
Score = 155 bits (333), Expect = 2e-037
Identities = 63/102 (61%), Positives = 77/102 (75%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L V L F + Q++ ASL+F++LFI IFAT IL MRWSGV I++WWRNEQFWV
Sbjct: 127 YCTLPAVSLLTGKFVIPQISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWV 306
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+H FAV QGLL V+AG+DT+ T T+K DD EF ELY
Sbjct: 307 IGGVSAHFFAVIQGLLKVLAGIDTNFTVTAKASDDGEFGELY 432
>gb|AY639654.1| Pinus radiata cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3911
Score = 155 bits (333), Expect = 2e-037
Identities = 63/102 (61%), Positives = 77/102 (75%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L V L F + Q++ ASL+F++LFI IFAT IL MRWSGV I++WWRNEQFWV
Sbjct: 2788 YCTLPAVSLLTGKFVIPQISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWV 2967
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+H FAV QGLL V+AG+DT+ T T+K DD EF ELY
Sbjct: 2968 IGGVSAHFFAVIQGLLKVLAGIDTNFTVTAKASDDGEFGELY 3093
>gb|AY789652.1| Pinus taeda cellulose synthase catalytic subunit (CesA3) mRNA,
complete cds
Length = 3959
Score = 155 bits (333), Expect = 2e-037
Identities = 63/102 (61%), Positives = 77/102 (75%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L V L F + Q++ ASL+F++LFI IFAT IL MRWSGV I++WWRNEQFWV
Sbjct: 2778 YCTLPAVSLLTGKFVIPQISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWV 2957
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+H FAV QGLL V+AG+DT+ T T+K DD EF ELY
Sbjct: 2958 IGGVSAHFFAVIQGLLKVLAGIDTNFTVTAKASDDGEFGELY 3083
>gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mRNA, complete cds
Length = 4428
Score = 154 bits (330), Expect = 4e-037
Identities = 61/95 (64%), Positives = 75/95 (78%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F + +++ +ASLWF+SLF+ IFAT IL MRWSGVGID+WWRNEQFWV
Sbjct: 3301 YCTLPAICLLTGKFIIPEISTLASLWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWV 3480
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDD 384
IGGVS+HLFAV QGLL V+AGVDT+ T TSK D+
Sbjct: 3481 IGGVSAHLFAVIQGLLKVLAGVDTNFTVTSKASDE 3585
Score = 105 bits (225), Expect(2) = 2e-025
Identities = 45/69 (65%), Positives = 52/69 (75%)
Frame = -1 / -2
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
F+V V VSTPA T +P* TAKR DTPP+TQNCSFLH SS+PTPLH I M VAKM
Sbjct: 3572 FEVTVKFVSTPARTFSNP*MTAKR*ADTPPITQNCSFLHHSSMPTPLHRISSMPVAKMDK 3393
Query: 191 KSDMNHRLA 165
++MNH+LA
Sbjct: 3392 NNEMNHKLA 3366
Score = 28.6 bits (56), Expect(2) = 2e-025
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1 / -2
Query: 47 SGVINFPVNKQMAGN 3
SG++NFPV + +AGN
Sbjct: 3353 SGIMNFPVRRHIAGN 3309
>gb|BX249614.1|BX249614 BX249614 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP026B12, mRNA sequence
Length = 685
Score = 153 bits (329), Expect = 6e-037
Identities = 60/102 (58%), Positives = 77/102 (75%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F + L+N+AS++FM LFI I T +L +RWSGV I++WWRNEQFWV
Sbjct: 139 YCTLPAICLLTGEFIIPTLSNLASIYFMLLFISIIVTGVLELRWSGVSIEEWWRNEQFWV 318
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+H FAVFQGLL V+AG+DT+ T T+K DD+EF ELY
Sbjct: 319 IGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELY 444
>gb|BX254022.1|BX254022 BX254022 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP092C09, mRNA sequence
Length = 690
Score = 153 bits (329), Expect = 6e-037
Identities = 60/102 (58%), Positives = 77/102 (75%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F + L+N+AS++FM LFI I T +L +RWSGV I++WWRNEQFWV
Sbjct: 88 YCTLPAICLLTGEFIIPTLSNLASIYFMLLFISIIVTGVLELRWSGVSIEEWWRNEQFWV 267
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+H FAVFQGLL V+AG+DT+ T T+K DD+EF ELY
Sbjct: 268 IGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELY 393
>gb|BQ702504.1|BQ702504 NXSI_129_D04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_129_D04 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 664
Score = 153 bits (329), Expect = 6e-037
Identities = 60/102 (58%), Positives = 77/102 (75%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F + L+N+AS++FM LFI I T +L +RWSGV I++WWRNEQFWV
Sbjct: 140 YCTLPAICLLTGEFIIPTLSNLASIYFMLLFISIIVTGVLELRWSGVSIEEWWRNEQFWV 319
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+H FAVFQGLL V+AG+DT+ T T+K DD+EF ELY
Sbjct: 320 IGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELY 445
>gb|CF666095.1|CF666095 RTCNT1_20_E07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_20_E07_A029 5', mRNA sequence
Length = 410
Score = 153 bits (329), Expect = 6e-037
Identities = 60/102 (58%), Positives = 77/102 (75%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F + L+N+AS++FM LFI I T +L +RWSGV I++WWRNEQFWV
Sbjct: 2 YCTLPAIFLLTGEFIIPTLSNLASIYFMLLFISIIVTGVLELRWSGVSIEEWWRNEQFWV 181
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+H FAVFQGLL V+AG+DT+ T T+K DD+EF ELY
Sbjct: 182 IGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELY 307
>gb|CO169549.1|CO169549 NDL1_7_F09.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_F09_A029 5', mRNA sequence
Length = 802
Score = 153 bits (329), Expect = 6e-037
Identities = 60/102 (58%), Positives = 77/102 (75%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F + L+N+AS++FM LFI I T +L +RWSGV I++WWRNEQFWV
Sbjct: 357 YCTLPAICLLTGEFIIPTLSNLASIYFMLLFISIIVTGVLELRWSGVSIEEWWRNEQFWV 536
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+H FAVFQGLL V+AG+DT+ T T+K DD+EF ELY
Sbjct: 537 IGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELY 662
>gb|CX646526.1|CX646526 COLD1_9_H07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_9_H07_A029 5', mRNA sequence
Length = 853
Score = 153 bits (329), Expect = 6e-037
Identities = 60/102 (58%), Positives = 77/102 (75%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F + L+N+AS++FM LFI I T +L +RWSGV I++WWRNEQFWV
Sbjct: 380 YCTLPAICLLTGEFIIPTLSNLASIYFMLLFISIIVTGVLELRWSGVSIEEWWRNEQFWV 559
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+H FAVFQGLL V+AG+DT+ T T+K DD+EF ELY
Sbjct: 560 IGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELY 685
>gb|DR054410.1|DR054410 RTCA1_17_D10.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_17_D10_A029 3', mRNA sequence
Length = 821
Score = 153 bits (329), Expect = 6e-037
Identities = 60/102 (58%), Positives = 77/102 (75%)
Frame = +1 / -2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F + L+N+AS++FM LFI I T +L +RWSGV I++WWRNEQFWV
Sbjct: 352 YCTLPAICLLTGEFIIPTLSNLASIYFMLLFISIIVTGVLELRWSGVSIEEWWRNEQFWV 173
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+H FAVFQGLL V+AG+DT+ T T+K DD+EF ELY
Sbjct: 172 IGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELY 47
>gb|AY789650.1| Pinus taeda cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3127
Score = 153 bits (329), Expect = 6e-037
Identities = 60/102 (58%), Positives = 77/102 (75%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F + L+N+AS++FM LFI I T +L +RWSGV I++WWRNEQFWV
Sbjct: 2341 YCTLPAICLLTGEFIIPTLSNLASIYFMLLFISIIVTGVLELRWSGVSIEEWWRNEQFWV 2520
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+H FAVFQGLL V+AG+DT+ T T+K DD+EF ELY
Sbjct: 2521 IGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELY 2646
>gb|AY262815.1| Pinus radiata cellulose synthase (CesA3) mRNA, partial cds
Length = 1333
Score = 153 bits (329), Expect = 6e-037
Identities = 60/102 (58%), Positives = 77/102 (75%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F + L+N+AS++FM LFI I T +L +RWSGV I++WWRNEQFWV
Sbjct: 358 YCTLPAICLLTGEFIIPTLSNLASIYFMLLFISIIVTGVLELRWSGVSIEEWWRNEQFWV 537
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+H FAVFQGLL V+AG+DT+ T T+K DD+EF ELY
Sbjct: 538 IGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELY 663
>dbj|BD236020.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 3851
Score = 152 bits (327), Expect = 1e-036
Identities = 62/102 (60%), Positives = 76/102 (74%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L V L F + Q++ ASL+ ++LFI IFAT IL MRWSGV I++WWRNEQFWV
Sbjct: 2772 YCTLPAVSLLTGKFVIPQISTFASLFLIALFISIFATGILKMRWSGVSIEEWWRNEQFWV 2951
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+H FAV QGLL V+AG+DT+ T T+K DD EF ELY
Sbjct: 2952 IGGVSAHFFAVIQGLLKVLAGIDTNFTVTAKASDDGEFGELY 3077
>gb|BF221043.1|BF221043 NXCI_162_E11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_162_E11 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 529
Score = 151 bits (325), Expect = 2e-036
Identities = 62/102 (60%), Positives = 76/102 (74%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L V L F + Q++ ASL+F++LFI IFAT IL MRWSGV I++WWRNEQFWV
Sbjct: 73 YCTLPAVSLLTGKFVIPQISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWV 252
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
IGGVS+H FAV Q LL V+AG+DT+ T T+K DD EF ELY
Sbjct: 253 IGGVSAHFFAVIQXLLKVLAGIDTNFTVTAKXSDDGEFGELY 378
>gb|AI812887.1|AI812887 22B3 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 399
Score = 150 bits (322), Expect = 5e-036
Identities = 57/89 (64%), Positives = 72/89 (80%)
Frame = +1 / +1
Query: 139 FHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQ 318
F + L+N+AS++FM LFI I T +L +RWSGV I++WWRNEQFWVIGGVS+H FAVFQ
Sbjct: 7 FIIPTLSNLASIYFMLLFISIIVTGVLELRWSGVSIEEWWRNEQFWVIGGVSAHFFAVFQ 186
Query: 319 GLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
GLL V+AG+DT+ T T+K DD+EF ELY
Sbjct: 187 GLLKVLAGIDTNFTVTAKASDDNEFGELY 273
>gb|AW698053.1|AW698053 NXNV_072_F12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_072_F12 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 386
Score = 150 bits (322), Expect = 5e-036
Identities = 57/89 (64%), Positives = 72/89 (80%)
Frame = +1 / +3
Query: 139 FHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQ 318
F + L+N+AS++FM LFI I T +L +RWSGV I++WWRNEQFWVIGGVS+H FAVFQ
Sbjct: 6 FIIPTLSNLASIYFMLLFISIIVTGVLELRWSGVSIEEWWRNEQFWVIGGVSAHFFAVFQ 185
Query: 319 GLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
GLL V+AG+DT+ T T+K DD+EF ELY
Sbjct: 186 GLLKVLAGIDTNFTVTAKASDDNEFGELY 272
>gb|BE209203.1|BE209203 NXNV_147_C08_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_147_C08 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 516
Score = 150 bits (322), Expect = 5e-036
Identities = 57/89 (64%), Positives = 72/89 (80%)
Frame = +1 / +3
Query: 139 FHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQ 318
F + L+N+AS++FM LFI I T +L +RWSGV I++WWRNEQFWVIGGVS+H FAVFQ
Sbjct: 6 FIIPTLSNLASIYFMLLFISIIVTGVLELRWSGVSIEEWWRNEQFWVIGGVSAHFFAVFQ 185
Query: 319 GLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
GLL V+AG+DT+ T T+K DD+EF ELY
Sbjct: 186 GLLKVLAGIDTNFTVTAKASDDNEFGELY 272
>gb|CF478399.1|CF478399 RTWW3_18_G11.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_18_G11_A022 5', mRNA sequence
Length = 717
Score = 150 bits (322), Expect = 5e-036
Identities = 60/96 (62%), Positives = 75/96 (78%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F + Q++ ASL+F++LF+ IFAT IL MRWSGVGID+WWRNEQFWV
Sbjct: 236 YCTLPAICLLTGKFIIPQISTFASLFFIALFLSIFATGILEMRWSGVGIDEWWRNEQFWV 415
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGGVS+HLFAV QGLL V+AG+DT+ T TSK D+D
Sbjct: 416 IGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKASDED 523
Score = 107 bits (228), Expect = 5e-023
Identities = 51/90 (56%), Positives = 57/90 (63%)
Frame = -1 / -1
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
FDV V VS PA T +P TAKR DTPPMTQNCSFLH SSIPTPLH I R+ VAKM+
Sbjct: 507 FDVTVKFVSIPARTFSNPWTTAKR*ADTPPMTQNCSFLHHSSIPTPLHRISRIPVAKMER 328
Query: 191 KSDMNHRLATLFSCSR*NSEHKVQTFHNKQ 102
KS + RLA + C N + Q N Q
Sbjct: 327 KSAIKKRLANVLICGIINFPVRRQIAGNVQ 238
>gb|CO168623.1|CO168623 NDL1_1_A02.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_1_A02_A029 5', mRNA sequence
Length = 662
Score = 150 bits (322), Expect = 5e-036
Identities = 57/89 (64%), Positives = 72/89 (80%)
Frame = +1 / +1
Query: 139 FHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQ 318
F + L+N+AS++FM LFI I T +L +RWSGV I++WWRNEQFWVIGGVS+H FAVFQ
Sbjct: 10 FIIPTLSNLASIYFMLLFISIIVTGVLELRWSGVSIEEWWRNEQFWVIGGVSAHFFAVFQ 189
Query: 319 GLLXVIAGVDTSXTXTSKGGDDDEFSELY 405
GLL V+AG+DT+ T T+K DD+EF ELY
Sbjct: 190 GLLKVLAGIDTNFTVTAKASDDNEFGELY 276
>gb|CV031645.1|CV031645 RTNACL1_2_G07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_2_G07_A029 5', mRNA sequence
Length = 796
Score = 150 bits (322), Expect = 5e-036
Identities = 60/96 (62%), Positives = 75/96 (78%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F + Q++ ASL+F++LF+ IFAT IL MRWSGVGID+WWRNEQFWV
Sbjct: 65 YCTLPAICLLTGKFIIPQISTFASLFFIALFLSIFATGILEMRWSGVGIDEWWRNEQFWV 244
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGGVS+HLFAV QGLL V+AG+DT+ T TSK D+D
Sbjct: 245 IGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKASDED 352
Score = 107 bits (228), Expect = 5e-023
Identities = 51/90 (56%), Positives = 57/90 (63%)
Frame = -1 / -2
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
FDV V VS PA T +P TAKR DTPPMTQNCSFLH SSIPTPLH I R+ VAKM+
Sbjct: 336 FDVTVKFVSIPARTFSNPWTTAKR*ADTPPMTQNCSFLHHSSIPTPLHRISRIPVAKMER 157
Query: 191 KSDMNHRLATLFSCSR*NSEHKVQTFHNKQ 102
KS + RLA + C N + Q N Q
Sbjct: 156 KSAIKKRLANVLICGIINFPVRRQIAGNVQ 67
>gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRNA, partial cds
Length = 3603
Score = 150 bits (322), Expect = 5e-036
Identities = 60/96 (62%), Positives = 75/96 (78%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F + Q++ ASL+F++LF+ IFAT IL MRWSGVGID+WWRNEQFWV
Sbjct: 2563 YCTLPAICLLTGKFIIPQISTFASLFFIALFLSIFATGILEMRWSGVGIDEWWRNEQFWV 2742
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGGVS+HLFAV QGLL V+AG+DT+ T TSK D+D
Sbjct: 2743 IGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKASDED 2850
Score = 107 bits (228), Expect = 5e-023
Identities = 51/90 (56%), Positives = 57/90 (63%)
Frame = -1 / -2
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
FDV V VS PA T +P TAKR DTPPMTQNCSFLH SSIPTPLH I R+ VAKM+
Sbjct: 2834 FDVTVKFVSIPARTFSNPWTTAKR*ADTPPMTQNCSFLHHSSIPTPLHRISRIPVAKMER 2655
Query: 191 KSDMNHRLATLFSCSR*NSEHKVQTFHNKQ 102
KS + RLA + C N + Q N Q
Sbjct: 2654 KSAIKKRLANVLICGIINFPVRRQIAGNVQ 2565
>gb|BG039408.1|BG039408 NXSI_098_F10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_098_F10 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 493
Score = 147 bits (316), Expect = 3e-035
Identities = 55/82 (67%), Positives = 68/82 (82%)
Frame = +1 / +2
Query: 160 NVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIA 339
N+AS++FM LFI I T +L +RWSGV I++WWRNEQFWVIGGVS+H FAVFQGLL V+A
Sbjct: 2 NLASIYFMLLFISIIVTGVLELRWSGVSIEEWWRNEQFWVIGGVSAHFFAVFQGLLKVLA 181
Query: 340 GVDTSXTXTSKGGDDDEFSELY 405
G+DT+ T T+K DD+EF ELY
Sbjct: 182 GIDTNFTVTAKASDDNEFGELY 247
>gb|BQ702475.1|BQ702475 NXSI_129_A10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_129_A10 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 518
Score = 147 bits (316), Expect = 3e-035
Identities = 55/82 (67%), Positives = 68/82 (82%)
Frame = +1 / +2
Query: 160 NVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXVIA 339
N+AS++FM LFI I T +L +RWSGV I++WWRNEQFWVIGGVS+H FAVFQGLL V+A
Sbjct: 2 NLASIYFMLLFISIIVTGVLELRWSGVSIEEWWRNEQFWVIGGVSAHFFAVFQGLLKVLA 181
Query: 340 GVDTSXTXTSKGGDDDEFSELY 405
G+DT+ T T+K DD+EF ELY
Sbjct: 182 GIDTNFTVTAKASDDNEFGELY 247
>gb|DR017506.1|DR017506 STRS1_16_E10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_16_E10_A034 5', mRNA sequence
Length = 730
Score = 144 bits (310), Expect = 2e-034
Identities = 58/96 (60%), Positives = 74/96 (77%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L V L F + +++N AS++F+ FI IF T+IL +RWS VGID+WWRNEQFWV
Sbjct: 233 YCTLPAVCLLTGKFIIPEISNFASVFFILYFISIFTTAILELRWSTVGIDEWWRNEQFWV 412
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDD 387
IGGVS+HLFAVFQGLL V+AG+DT+ T TSK D+D
Sbjct: 413 IGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKSSDED 520
>gb|CF478017.1|CF478017 RTWW3_17_B06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_17_B06_A022 5', mRNA sequence
Length = 579
Score = 144 bits (308), Expect = 4e-034
Identities = 58/91 (63%), Positives = 72/91 (79%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F + Q++ ASL+F++LF+ IFAT IL MRWSGVGID+WWRNEQFWV
Sbjct: 301 YCTLPAICLLTGKFIIPQISTFASLFFIALFLSIFATGILEMRWSGVGIDEWWRNEQFWV 480
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSK 372
IGGVS+HLFAV QGLL V+AG+DT+ T TSK
Sbjct: 481 IGGVSAHLFAVVQGLLKVLAGIDTNFTVTSK 573
Score = 107 bits (228), Expect = 5e-023
Identities = 51/90 (56%), Positives = 57/90 (63%)
Frame = -1 / -2
Query: 371 FDVXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQI 192
FDV V VS PA T +P TAKR DTPPMTQNCSFLH SSIPTPLH I R+ VAKM+
Sbjct: 572 FDVTVKFVSIPARTFSNPWTTAKR*ADTPPMTQNCSFLHHSSIPTPLHRISRIPVAKMER 393
Query: 191 KSDMNHRLATLFSCSR*NSEHKVQTFHNKQ 102
KS + RLA + C N + Q N Q
Sbjct: 392 KSAIKKRLANVLICGIINFPVRRQIAGNVQ 303
>gb|AW289623.1|AW289623 NXNV003H02F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV003H02 5', mRNA sequence
Length = 508
Score = 142 bits (304), Expect(2) = 1e-033
Identities = 56/97 (57%), Positives = 73/97 (75%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F L ++AS+WFM LFI I AT +L +RWSGV I+++WRNEQFWV
Sbjct: 78 YCTLPAICLLTGKFITPTLTSLASVWFMGLFISIIATGVLELRWSGVSIEEFWRNEQFWV 257
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDE 390
IGGVS+HLFAVFQGLL V+ GVDT+ T T+KG D+++
Sbjct: 258 IGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 368
Score = 92.3 bits (195), Expect(2) = 7e-021
Identities = 44/71 (61%), Positives = 47/71 (66%)
Frame = -1 / -1
Query: 365 VXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIKS 186
V V LVSTP T P* TAKR +TPPMTQNCSFL SS+ TPLHL R VA M +KS
Sbjct: 343 VTVKLVSTPPNTLSRP*KTAKR*AETPPMTQNCSFLQNSSMLTPLHLSSRTPVAMMDMKS 164
Query: 185 DMNHRLATLFS 153
MN LA L S
Sbjct: 163 PMNQTLARLVS 131
Score = 26.7 bits (52), Expect(2) = 7e-021
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1 / -1
Query: 44 GVINFPVNKQMAGN 3
GV+NFPV + MAG+
Sbjct: 127 GVMNFPVRRHMAGS 86
Score = 19.4 bits (36), Expect(2) = 1e-033
Identities = 5/10 (50%), Positives = 9/10 (90%)
Frame = +1 / +3
Query: 379 DDDEFSELYL 408
++D+F ELY+
Sbjct: 360 EEDQFGELYM 389
>gb|CD028231.1|CD028231 NXNV003H02 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV003H02 5' similar to Arabidopsis thaliana sequence
At5g44030 cellulose synthase catalytic subunit-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 508
Score = 142 bits (304), Expect(2) = 1e-033
Identities = 56/97 (57%), Positives = 73/97 (75%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F L ++AS+WFM LFI I AT +L +RWSGV I+++WRNEQFWV
Sbjct: 78 YCTLPAICLLTGKFITPTLTSLASVWFMGLFISIIATGVLELRWSGVSIEEFWRNEQFWV 257
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDE 390
IGGVS+HLFAVFQGLL V+ GVDT+ T T+KG D+++
Sbjct: 258 IGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 368
Score = 92.3 bits (195), Expect(2) = 7e-021
Identities = 44/71 (61%), Positives = 47/71 (66%)
Frame = -1 / -1
Query: 365 VXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIKS 186
V V LVSTP T P* TAKR +TPPMTQNCSFL SS+ TPLHL R VA M +KS
Sbjct: 343 VTVKLVSTPPNTLSRP*KTAKR*AETPPMTQNCSFLQNSSMLTPLHLSSRTPVAMMDMKS 164
Query: 185 DMNHRLATLFS 153
MN LA L S
Sbjct: 163 PMNQTLARLVS 131
Score = 26.7 bits (52), Expect(2) = 7e-021
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1 / -1
Query: 44 GVINFPVNKQMAGN 3
GV+NFPV + MAG+
Sbjct: 127 GVMNFPVRRHMAGS 86
Score = 19.4 bits (36), Expect(2) = 1e-033
Identities = 5/10 (50%), Positives = 9/10 (90%)
Frame = +1 / +3
Query: 379 DDDEFSELYL 408
++D+F ELY+
Sbjct: 360 EEDQFGELYM 389
>gb|DR110657.1|DR110657 RTS1_12_E03.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_E03_A029 3', mRNA sequence
Length = 815
Score = 142 bits (304), Expect = 2e-033
Identities = 56/97 (57%), Positives = 73/97 (75%)
Frame = +1 / -3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F L ++AS+WFM LFI I AT +L +RWSGV I+++WRNEQFWV
Sbjct: 549 YCTLPAICLLTGKFITPTLTSLASVWFMGLFISIIATGVLELRWSGVSIEEFWRNEQFWV 370
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDE 390
IGGVS+HLFAVFQGLL V+ GVDT+ T T+KG D+++
Sbjct: 369 IGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 259
Score = 92.3 bits (195), Expect(2) = 1e-020
Identities = 44/71 (61%), Positives = 47/71 (66%)
Frame = -1 / +2
Query: 365 VXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIKS 186
V V LVSTP T P* TAKR +TPPMTQNCSFL SS+ TPLHL R VA M +KS
Sbjct: 284 VTVKLVSTPPNTLSRP*KTAKR*AETPPMTQNCSFLQNSSMLTPLHLSSRTPVAMMDMKS 463
Query: 185 DMNHRLATLFS 153
MN LA L S
Sbjct: 464 PMNQTLARLVS 496
Score = 26.7 bits (52), Expect(2) = 1e-020
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1 / +2
Query: 44 GVINFPVNKQMAGN 3
GV+NFPV + MAG+
Sbjct: 500 GVMNFPVRRHMAGS 541
>gb|AY789651.1| Pinus taeda cellulose synthase catalytic subunit (CesA2) mRNA,
complete cds
Length = 3478
Score = 142 bits (304), Expect = 2e-033
Identities = 56/97 (57%), Positives = 73/97 (75%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F L ++AS+WFM LFI I AT +L +RWSGV I+++WRNEQFWV
Sbjct: 2593 YCTLPAICLLTGKFITPTLTSLASVWFMGLFISIIATGVLELRWSGVSIEEFWRNEQFWV 2772
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDE 390
IGGVS+HLFAVFQGLL V+ GVDT+ T T+KG D+++
Sbjct: 2773 IGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 2883
Score = 92.3 bits (195), Expect(2) = 9e-021
Identities = 44/71 (61%), Positives = 47/71 (66%)
Frame = -1 / -3
Query: 365 VXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIKS 186
V V LVSTP T P* TAKR +TPPMTQNCSFL SS+ TPLHL R VA M +KS
Sbjct: 2858 VTVKLVSTPPNTLSRP*KTAKR*AETPPMTQNCSFLQNSSMLTPLHLSSRTPVAMMDMKS 2679
Query: 185 DMNHRLATLFS 153
MN LA L S
Sbjct: 2678 PMNQTLARLVS 2646
Score = 26.7 bits (52), Expect(2) = 9e-021
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1 / -3
Query: 44 GVINFPVNKQMAGN 3
GV+NFPV + MAG+
Sbjct: 2642 GVMNFPVRRHMAGS 2601
>gb|AY262814.1| Pinus radiata cellulose synthase (CesA11) mRNA, partial cds
Length = 1258
Score = 142 bits (304), Expect = 2e-033
Identities = 56/97 (57%), Positives = 73/97 (75%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F L ++AS+WFM LFI I AT +L +RWSGV I+++WRNEQFWV
Sbjct: 328 YCTLPAICLLTGKFITPTLTSLASVWFMGLFISIIATGVLELRWSGVSIEEFWRNEQFWV 507
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDE 390
IGGVS+HLFAVFQGLL V+ GVDT+ T T+KG D+++
Sbjct: 508 IGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 618
Score = 92.7 bits (196), Expect(2) = 7e-021
Identities = 44/71 (61%), Positives = 47/71 (66%)
Frame = -1 / -3
Query: 365 VXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIKS 186
V V LVSTP T P* TAKR +TPPMTQNCSFL SS+ TPLHL R VA M +KS
Sbjct: 593 VTVKLVSTPPNTLSKP*KTAKR*AETPPMTQNCSFLQNSSMLTPLHLSSRTPVAMMDMKS 414
Query: 185 DMNHRLATLFS 153
MN LA L S
Sbjct: 413 PMNQTLARLVS 381
Score = 26.7 bits (52), Expect(2) = 7e-021
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1 / -3
Query: 44 GVINFPVNKQMAGN 3
GV+NFPV + MAG+
Sbjct: 377 GVMNFPVRRHMAGS 336
>gb|AY262816.1| Pinus radiata cellulose synthase (CesA5) mRNA, partial cds
Length = 1989
Score = 142 bits (304), Expect = 2e-033
Identities = 56/97 (57%), Positives = 73/97 (75%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F L ++AS+WFM LFI I AT +L +RWSGV I+++WRNEQFWV
Sbjct: 887 YCTLPAICLLTGKFITPTLTSLASVWFMGLFISIIATGVLELRWSGVSIEEFWRNEQFWV 1066
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDE 390
IGGVS+HLFAVFQGLL V+ GVDT+ T T+KG D+++
Sbjct: 1067 IGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 1177
Score = 92.3 bits (195), Expect(2) = 1e-020
Identities = 44/71 (61%), Positives = 47/71 (66%)
Frame = -1 / -1
Query: 365 VXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIKS 186
V V LVSTP T P* TAKR +TPPMTQNCSFL SS+ TPLHL R VA M +KS
Sbjct: 1152 VTVKLVSTPPNTLSRP*KTAKR*AETPPMTQNCSFLQNSSMLTPLHLSSRTPVAMMDMKS 973
Query: 185 DMNHRLATLFS 153
MN LA L S
Sbjct: 972 PMNQTLARLVS 940
Score = 26.7 bits (52), Expect(2) = 1e-020
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1 / -1
Query: 44 GVINFPVNKQMAGN 3
GV+NFPV + MAG+
Sbjct: 936 GVMNFPVRRHMAGS 895
>gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRNA, partial cds
Length = 2588
Score = 142 bits (304), Expect = 2e-033
Identities = 56/97 (57%), Positives = 73/97 (75%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F L ++AS+WFM LFI I AT +L +RWSGV I+++WRNEQFWV
Sbjct: 1666 YCTLPAICLLTGKFITPTLTSLASVWFMGLFISIIATGVLELRWSGVSIEEFWRNEQFWV 1845
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDE 390
IGGVS+HLFAVFQGLL V+ GVDT+ T T+KG D+++
Sbjct: 1846 IGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 1956
Score = 92.3 bits (195), Expect(2) = 1e-020
Identities = 44/71 (61%), Positives = 47/71 (66%)
Frame = -1 / -1
Query: 365 VXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIKS 186
V V LVSTP T P* TAKR +TPPMTQNCSFL SS+ TPLHL R VA M +KS
Sbjct: 1931 VTVKLVSTPPNTLSRP*KTAKR*AETPPMTQNCSFLQNSSMLTPLHLSSRTPVAMMDMKS 1752
Query: 185 DMNHRLATLFS 153
MN LA L S
Sbjct: 1751 PMNQTLARLVS 1719
Score = 26.7 bits (52), Expect(2) = 1e-020
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1 / -1
Query: 44 GVINFPVNKQMAGN 3
GV+NFPV + MAG+
Sbjct: 1715 GVMNFPVRRHMAGS 1674
>gb|AY262819.1| Pinus radiata cellulose synthase (CesA8) mRNA, partial cds
Length = 2287
Score = 142 bits (304), Expect = 2e-033
Identities = 56/97 (57%), Positives = 73/97 (75%)
Frame = +1 / +1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F L ++AS+WFM LFI I AT +L +RWSGV I+++WRNEQFWV
Sbjct: 1333 YCTLPAICLLTGKFITPTLTSLASVWFMGLFISIIATGVLELRWSGVSIEEFWRNEQFWV 1512
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDE 390
IGGVS+HLFAVFQGLL V+ GVDT+ T T+KG D+++
Sbjct: 1513 IGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 1623
Score = 92.7 bits (196), Expect(2) = 7e-021
Identities = 44/71 (61%), Positives = 47/71 (66%)
Frame = -1 / -3
Query: 365 VXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIKS 186
V V LVSTP T P* TAKR +TPPMTQNCSFL SS+ TPLHL R VA M +KS
Sbjct: 1598 VTVKLVSTPPNTLSKP*KTAKR*AETPPMTQNCSFLQNSSMLTPLHLSSRTPVAMMDMKS 1419
Query: 185 DMNHRLATLFS 153
MN LA L S
Sbjct: 1418 PMNQTLARLVS 1386
Score = 26.7 bits (52), Expect(2) = 7e-021
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1 / -3
Query: 44 GVINFPVNKQMAGN 3
GV+NFPV + MAG+
Sbjct: 1382 GVMNFPVRRHMAGS 1341
>gb|DR110744.1|DR110744 RTS1_12_E03.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_E03_A029 5', mRNA sequence
Length = 847
Score = 139 bits (298), Expect(2) = 2e-033
Identities = 52/79 (65%), Positives = 67/79 (84%)
Frame = +1 / -2
Query: 154 LNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXV 333
L ++AS+WFM LFI I AT +L +RWSGV I+++WRNEQFWVIGGVS+HLFAVFQGLL V
Sbjct: 819 LTSLASVWFMGLFISIIATGVLELRWSGVSIEEFWRNEQFWVIGGVSAHLFAVFQGLLKV 640
Query: 334 IAGVDTSXTXTSKGGDDDE 390
+ GVDT+ T T+KG D+++
Sbjct: 639 LGGVDTNFTVTAKGSDEED 583
Score = 22.1 bits (42), Expect(2) = 2e-033
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1 / -2
Query: 22 LTGKFITP 45
LTGKFITP
Sbjct: 846 LTGKFITP 823
>gb|BX250396.1|BX250396 BX250396 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP036D07 similar to Cellulose synthase
catalytic subunit, mRNA sequence
Length = 585
Score = 141 bits (302), Expect = 3e-033
Identities = 55/97 (56%), Positives = 73/97 (75%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F L ++AS+WFM LF+ I AT +L +RWSGV I+++WRNEQFWV
Sbjct: 189 YCTLPAICLLTGKFITPTLTSLASVWFMGLFLSIIATGVLELRWSGVSIEEFWRNEQFWV 368
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDE 390
IGGVS+HLFAVFQGLL V+ GVDT+ T T+KG D+++
Sbjct: 369 IGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 479
>gb|BX255542.1|BX255542 BX255542 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007A04 similar to Cellulose synthase
catalytic subunit, mRNA sequence
Length = 696
Score = 141 bits (302), Expect = 3e-033
Identities = 55/97 (56%), Positives = 73/97 (75%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F L ++AS+WFM LF+ I AT +L +RWSGV I+++WRNEQFWV
Sbjct: 264 YCTLPAICLLTGKFITPTLTSLASVWFMGLFLSIIATGVLELRWSGVSIEEFWRNEQFWV 443
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDE 390
IGGVS+HLFAVFQGLL V+ GVDT+ T T+KG D+++
Sbjct: 444 IGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 554
>gb|DR017425.1|DR017425 STRS1_16_E10.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_16_E10_A034 3', mRNA sequence
Length = 852
Score = 140 bits (301), Expect = 4e-033
Identities = 54/83 (65%), Positives = 69/83 (83%)
Frame = +1 / +2
Query: 139 FHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQ 318
F + +++N AS++F+ FI IF T+IL +RWS VGID+WWRNEQFWVIGGVS+HLFAVFQ
Sbjct: 11 FIIPEISNFASVFFILYFISIFTTAILELRWSTVGIDEWWRNEQFWVIGGVSAHLFAVFQ 190
Query: 319 GLLXVIAGVDTSXTXTSKGGDDD 387
GLL V+AG+DT+ T TSK D+D
Sbjct: 191 GLLKVLAGIDTNFTVTSKSSDED 259
>gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRNA, partial cds
Length = 2489
Score = 140 bits (301), Expect = 4e-033
Identities = 55/97 (56%), Positives = 73/97 (75%)
Frame = +1 / +2
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F L ++AS+WFM LFI I AT +L +RWSGV I+++WRN+QFWV
Sbjct: 1445 YCTLPAICLLTGKFITPTLTSLASVWFMGLFISIIATGVLELRWSGVSIEEFWRNQQFWV 1624
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKGGDDDE 390
IGGVS+HLFAVFQGLL V+ GVDT+ T T+KG D+++
Sbjct: 1625 IGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 1735
>gb|CO369260.1|CO369260 RTK1_46_B01.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_46_B01_A029 3', mRNA sequence
Length = 876
Score = 137 bits (293), Expect = 5e-032
Identities = 51/79 (64%), Positives = 66/79 (83%)
Frame = +1 / +2
Query: 154 LNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLXV 333
L ++AS+WFM LFI I AT +L +RWSGV I+++WRNEQFWV GGVS+HLFAVFQGLL V
Sbjct: 26 LTSLASVWFMGLFISIIATGVLELRWSGVSIEEFWRNEQFWVXGGVSAHLFAVFQGLLKV 205
Query: 334 IAGVDTSXTXTSKGGDDDE 390
+ GVDT+ T T+KG D+++
Sbjct: 206 LGGVDTNFTVTAKGSDEED 262
>gb|CF396363.1|CF396363 RTDS2_21_F06.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_21_F06_A021 5', mRNA sequence
Length = 716
Score = 136 bits (292), Expect = 7e-032
Identities = 55/92 (59%), Positives = 69/92 (75%)
Frame = +1 / +3
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L + L F L ++AS+WFM LFI I AT +L +RWSGV I+++WRNEQFWV
Sbjct: 441 YCTLPAICLLTGKFITPTLTSLASVWFMGLFISIIATGVLELRWSGVSIEEFWRNEQFWV 620
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXTSKG 375
IGGVS+HLFAVFQGLL V+ GVDT+ T T+KG
Sbjct: 621 IGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKG 716
Score = 92.3 bits (195), Expect(2) = 1e-020
Identities = 44/71 (61%), Positives = 47/71 (66%)
Frame = -1 / -2
Query: 365 VXVXLVSTPAMTXRSP*NTAKRCEDTPPMTQNCSFLHQSSIPTPLHLIXRMLVAKMQIKS 186
V V LVSTP T P* TAKR +TPPMTQNCSFL SS+ TPLHL R VA M +KS
Sbjct: 706 VTVKLVSTPPNTLSRP*KTAKR*AETPPMTQNCSFLQNSSMLTPLHLSSRTPVAMMDMKS 527
Query: 185 DMNHRLATLFS 153
MN LA L S
Sbjct: 526 PMNQTLARLVS 494
Score = 26.7 bits (52), Expect(2) = 1e-020
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1 / -2
Query: 44 GVINFPVNKQMAGN 3
GV+NFPV + MAG+
Sbjct: 490 GVMNFPVRRHMAGS 449
>gb|DR118589.1|DR118589 RTMG1_18_A07.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_18_A07_A029 3', mRNA sequence
Length = 610
Score = 135 bits (289), Expect = 2e-031
Identities = 55/89 (61%), Positives = 68/89 (76%)
Frame = +1 / -1
Query: 100 FCLLWNV*TLCSLFHLLQLNNVASLWFMSLFICIFATSILXMRWSGVGIDDWWRNEQFWV 279
+C L V L F + Q++ ASL+F++LFI IFAT IL MRWSGV I++WWRNEQFWV
Sbjct: 268 YCTLPAVSLLTGKFVIPQISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWV 89
Query: 280 IGGVSSHLFAVFQGLLXVIAGVDTSXTXT 366
IGGVS+H FAV QGLL V+AG+DT+ T T
Sbjct: 88 IGGVSAHFFAVIQGLLKVLAGIDTNFTVT 2
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 215,965,517
Number of Sequences: 355925
Number of extensions: 2819636
Number of successful extensions: 57103
Number of sequences better than 1.0e-020: 102
length of database: 72,425,745
effective HSP length: 50
effective length of database: 54,629,495
effective search space used: 4971284045
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)