TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF36h01.yg.2.1
(689 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR119504.1|DR119504 RTMG1_23_E02.g1_A029 Roots minus mag... 203 7e-093
gb|CF397586.1|CF397586 RTDS3_4_C05.g1_A022 Drought-stressed... 185 1e-075
gb|DR088698.1|DR088698 RTAL1_3_H03.g1_A029 Roots plus added... 131 2e-073
gb|BX679935.1|BX679935 BX679935 RS Pinus pinaster cDNA clon... 203 7e-072
gb|BX252161.1|BX252161 BX252161 Pinus pinaster differenciat... 185 2e-066
gb|CF479877.1|CF479877 RTWW3_12_D09.g1_A022 Well-watered lo... 203 1e-062
gb|AW985166.1|AW985166 NXNV_133_G09_F Nsf Xylem Normal wood... 178 2e-054
gb|AW870019.1|AW870019 NXNV_123_B02_F Nsf Xylem Normal wood... 203 1e-051
gb|CF479037.1|CF479037 RTWW3_21_G11.g1_A022 Well-watered lo... 177 5e-044
gb|BX255589.1|BX255589 BX255589 Pinus pinaster differenciat... 171 3e-042
gb|BV079723.1| Pp_Korrigan Pinus pinaster megagametophytes ... 95 4e-039
gb|CV032886.1|CV032886 RTNACL1_18_H11.g1_A029 Roots plus ad... 144 6e-034
gb|BE657127.1|BE657127 NXCI_064_B11_F NXCI (Nsf Xylem Compr... 120 9e-027
gb|AW869945.1|AW869945 NXNV_120_C02_F Nsf Xylem Normal wood... 119 2e-026
gb|AW984943.1|AW984943 NXNV_106_A11_F Nsf Xylem Normal wood... 116 1e-025
gb|BQ699769.1|BQ699769 NXRV128_G04_F NXRV (Nsf Xylem Root w... 109 3e-023
gb|DR096991.1|DR096991 STRR1_31_E11.g1_A033 Stem Response R... 104 8e-022
>gb|DR119504.1|DR119504 RTMG1_23_E02.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_23_E02_A029 5', mRNA sequence
Length = 805
Score = 203 bits (438), Expect(2) = 7e-093
Identities = 78/102 (76%), Positives = 91/102 (89%)
Frame = -2 / +2
Query: 307 GSPNYGVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFN 128
G +YGV +WD+KL GAQVLLSRLRLFLSPGYPYE++L+++HNQT+ VMCSYLPVF +FN
Sbjct: 293 GGQDYGVLSWDNKLAGAQVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFN 472
Query: 127 FTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGW 2
T+GGLIQLNHGRPQPLQY NAAFLA++YSDYL AAD PGW
Sbjct: 473 RTRGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGW 598
Score = 157 bits (338), Expect(2) = 7e-093
Identities = 63/96 (65%), Positives = 74/96 (77%)
Frame = -2 / +2
Query: 601 LAXXXXAXXXXASIVFKDSKTYSDKLVKGAKALYKFGRLQRGRYSPNGSDQAIFYNSTSY 422
L A ASIVFKD+K YS KLVKGA L+KF R QRGRYSP+GSD + FYNS+ Y
Sbjct: 2 LGCKTAAALAAASIVFKDNKLYSQKLVKGATTLFKFSREQRGRYSPSGSDVSKFYNSSGY 181
Query: 421 WDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAY 314
+DE+VWGGAWMY+ATGNNSYL +AT G+AK AGA+
Sbjct: 182 YDEYVWGGAWMYYATGNNSYLQLATTMGIAKRAGAF 289
Score = 104 bits (221), Expect(2) = 5e-042
Identities = 51/97 (52%), Positives = 58/97 (59%)
Frame = +3 / -2
Query: 6 PGVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNTGKYEHMTLSVWLW 185
PG+SAA +*SL ARKAA Y G GLPW S I PPLV L TG+YEH+T+ VWL
Sbjct: 594 PGISAAVK*SL*TAARKAAFATYCRGWGLPWFS*IKPPLVLLKVRKTGRYEHITILVWL* 415
Query: 186 NVLSISS*GYPGXXXXXXXXXXT*APGSLSSQVNTP* 296
+ SS GYPG T AP SL SQ+ TP*
Sbjct: 414 *LCKTSSYGYPGLKKSLSLLKRTWAPASLLSQLKTP* 304
Score = 87.2 bits (184), Expect(2) = 5e-042
Identities = 47/93 (50%), Positives = 53/93 (56%)
Frame = +3 / -2
Query: 306 PNQYAPACFAIPGAVATVRYELFPVAKYIHAPPHTNSSQ*LVEL*KMAWSDPLGLYRPRC 485
P + APA AIP VA+ R ELFPVA YIHAPP T SS * EL* + S PLGLYRP C
Sbjct: 297 PPRNAPARLAIPIVVAS*R*ELFPVA*YIHAPPQTYSS**PEEL*NLETSLPLGLYRPLC 118
Query: 486 SLPNLYRALAPXXXXXXXXXXXXNTMEAXXXXA 584
SL NL +AP T++A A
Sbjct: 117 SLENLKSVVAPLTSFCE*SLLSLKTIDAAAKAA 19
Score = 74.8 bits (157), Expect(2) = 1e-025
Identities = 41/109 (37%), Positives = 63/109 (57%)
Frame = +2 / -1
Query: 2 PPRRVSRFKIVAV*RSKESCVDSVLKRLRPSMVELY*SSFGEVE*IEYR*IRAHDVVGLV 181
P R + +IV + K+SC+ +L RL PSMV+L +S +E E R +RAH + LV
Sbjct: 598 PARNICSSQIVTINCCKKSCICHIL*RLGPSMVQLNQTSSCSIEGTEDRKVRAHHNISLV 419
Query: 182 VECPQYFFVRVPWT*EESQPAEKNLSSWKFVIPGKHSVVWTSKPVCSSV 328
V Q F+ + *E+ QPA++NL + FVIP +++V + SS+
Sbjct: 418 VITLQNVFIWISRA*EKPQPAQENLGTS*FVIPA*NTIVLPTTECTSSL 272
Score = 61.6 bits (128), Expect(2) = 1e-025
Identities = 29/81 (35%), Positives = 48/81 (59%)
Frame = +2 / -1
Query: 317 CSSVLRHSRGCGDGEVRVVPRGEVHPRTAPHELVPVAGGVVEDGLVRSVGAVSPTLQPAE 496
C+S L +S ++RV+P G +HP T+P+ L+ VA +V+ G + S +S +L P E
Sbjct: 286 CTSSLGNSHCSSQLKIRVIPCGIIHPCTSPNILIIVARRIVKFGNITSTRTISTSLFPGE 107
Query: 497 LVQGLGALDELVGVGLAVLEH 559
L + LD+ + V L +LE+
Sbjct: 106 LEERCSTLDKFL*VKLVILEN 44
>gb|CF397586.1|CF397586 RTDS3_4_C05.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_4_C05_A022 5', mRNA sequence
Length = 729
Score = 185 bits (399), Expect(2) = 1e-075
Identities = 73/113 (64%), Positives = 86/113 (76%)
Frame = -2 / +1
Query: 652 EXIDYXXXXXECHSCSDLAXXXXAXXXXASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR 473
E +DY +CHSCSDLA A ASIVFKD+K YS KLVKGA L+KF R QRGR
Sbjct: 208 EDVDYPRPVYDCHSCSDLAAETAAALAAASIVFKDNKLYSQKLVKGATTLFKFSREQRGR 387
Query: 472 YSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAY 314
YSP+GSD + FYNS+ Y+DE+VWGGAWMY+ATGNNSYL +AT G+AK AGA+
Sbjct: 388 YSPSGSDVSKFYNSSGYYDEYVWGGAWMYYATGNNSYLQLATTMGIAKRAGAF 546
Score = 117 bits (251), Expect(2) = 1e-075
Identities = 44/60 (73%), Positives = 54/60 (90%)
Frame = -2 / +1
Query: 307 GSPNYGVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFN 128
G +YGV +WD+KL GAQVLLSRLRLFLSPGYPYE++L+++HNQT+ VMCSYLPVF +FN
Sbjct: 550 GGQDYGVLSWDNKLAGAQVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFN 729
Score = 106 bits (227), Expect(2) = 6e-033
Identities = 57/116 (49%), Positives = 64/116 (55%)
Frame = +3 / -2
Query: 306 PNQYAPACFAIPGAVATVRYELFPVAKYIHAPPHTNSSQ*LVEL*KMAWSDPLGLYRPRC 485
P + APA AIP VA+ R ELFPVA YIHAPP T SS * EL* + S PLGLYRP C
Sbjct: 554 PPRNAPARLAIPIVVAS*R*ELFPVA*YIHAPPQTYSS**PEEL*NLETSLPLGLYRPLC 375
Query: 486 SLPNLYRALAPXXXXXXXXXXXXNTMEAXXXXAXXXXARSEQEWHSXXXXX*SMXS 653
SL NL +AP T++A A A+SEQEW S *S S
Sbjct: 374 SLENLKSVVAPLTSFCE*SLLSLKTIDAAAKAAAVSAAKSEQEWQSYTGRG*STSS 207
Score = 54.2 bits (112), Expect(2) = 6e-033
Identities = 25/51 (49%), Positives = 30/51 (58%)
Frame = +3 / -2
Query: 144 TGKYEHMTLSVWLWNVLSISS*GYPGXXXXXXXXXXT*APGSLSSQVNTP* 296
TG+YEH+T+ VWL + SS GYPG T AP SL SQ+ TP*
Sbjct: 713 TGRYEHITILVWL**LCKTSSYGYPGLKKSLSLLKRTWAPASLLSQLKTP* 561
>gb|DR088698.1|DR088698 RTAL1_3_H03.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_3_H03_A029 5', mRNA sequence
Length = 509
Score = 131 bits (280), Expect(3) = 2e-073
Identities = 50/68 (73%), Positives = 61/68 (89%)
Frame = -2 / +2
Query: 307 GSPNYGVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFN 128
G +YGV +WD+KL GAQVLLSRLRLFLSPGYPYE++L+++HNQT+ VMCSYLPVF +FN
Sbjct: 182 GGQDYGVLSWDNKLAGAQVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFN 361
Query: 127 FTKGGLIQ 104
T+GGLIQ
Sbjct: 362 RTRGGLIQ 385
Score = 108 bits (230), Expect(3) = 2e-073
Identities = 40/57 (70%), Positives = 49/57 (85%)
Frame = -2 / +2
Query: 484 QRGRYSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAY 314
QRGRYSP+GSD + FYNS+ Y+DE+VWGGAWMY+AT NNSYL +AT G+AK AGA+
Sbjct: 8 QRGRYSPSGSDVSKFYNSSGYYDEYVWGGAWMYYATRNNSYLQLATTMGIAKRAGAF 178
Score = 75.8 bits (159), Expect(3) = 2e-073
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = -2 / +3
Query: 106 QLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGW 2
+LNHGRPQPLQY NAAFLA++YSDYL AAD PGW
Sbjct: 384 RLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGW 488
Score = 69.8 bits (146), Expect(3) = 7e-033
Identities = 37/60 (61%), Positives = 40/60 (66%)
Frame = +3 / -3
Query: 306 PNQYAPACFAIPGAVATVRYELFPVAKYIHAPPHTNSSQ*LVEL*KMAWSDPLGLYRPRC 485
P + APA AIP VA+ R ELF VA YIHAPP T SS * EL* + S PLGLYRP C
Sbjct: 186 PPRNAPARLAIPIVVAS*R*ELFRVA*YIHAPPQTYSS**PEEL*NLETSLPLGLYRPLC 7
Score = 65.2 bits (136), Expect(3) = 7e-033
Identities = 31/63 (49%), Positives = 36/63 (57%)
Frame = +3 / -3
Query: 108 INPPLVKLNELNTGKYEHMTLSVWLWNVLSISS*GYPGXXXXXXXXXXT*APGSLSSQVN 287
I PPLV L TG+YEH+T+ VWL + SS GYPG T AP SL SQ+
Sbjct: 381 IKPPLVLLKVRKTGRYEHITILVWL**LCKTSSYGYPGLKKSLSLLKRTWAPASLLSQLK 202
Query: 288 TP* 296
TP*
Sbjct: 201 TP* 193
Score = 43.7 bits (89), Expect(3) = 7e-033
Identities = 20/33 (60%), Positives = 22/33 (66%)
Frame = +3 / -2
Query: 6 PGVSAASR*SLYKEARKAALTAY*SG*GLPWLS 104
PG+SAA +*SL ARKAA Y G GLPW S
Sbjct: 484 PGISAAVK*SL*TAARKAAFATYCRGWGLPWFS 386
>gb|BX679935.1|BX679935 BX679935 RS Pinus pinaster cDNA clone RS36F1, mRNA sequence
Length = 620
Score = 203 bits (438), Expect(2) = 7e-072
Identities = 78/102 (76%), Positives = 91/102 (89%)
Frame = -2 / +1
Query: 307 GSPNYGVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFN 128
G +YGV +WD+KL GAQVLLSRLRLFLSPGYPYE++L+++HNQT+ VMCSYLPVF +FN
Sbjct: 145 GGQDYGVLSWDNKLAGAQVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFN 324
Query: 127 FTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGW 2
T+GGLIQLNHGRPQPLQY NAAFLA++YSDYL AAD PGW
Sbjct: 325 RTRGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGW 450
Score = 104 bits (221), Expect(2) = 3e-031
Identities = 51/97 (52%), Positives = 58/97 (59%)
Frame = +3 / -1
Query: 6 PGVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNTGKYEHMTLSVWLW 185
PG+SAA +*SL ARKAA Y G GLPW S I PPLV L TG+YEH+T+ VWL
Sbjct: 446 PGISAAVK*SL*TAARKAAFATYCRGWGLPWFS*IKPPLVLLKVRKTGRYEHITILVWL* 267
Query: 186 NVLSISS*GYPGXXXXXXXXXXT*APGSLSSQVNTP* 296
+ SS GYPG T AP SL SQ+ TP*
Sbjct: 266 *LCKTSSYGYPGLKKSLSLLKRTWAPASLLSQLKTP* 156
Score = 87.7 bits (185), Expect(2) = 7e-072
Identities = 31/43 (72%), Positives = 38/43 (88%)
Frame = -2 / +1
Query: 442 FYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAY 314
FYNS+ Y+DE+VWGGAWMY+ATGNNSYL +AT G+AK AGA+
Sbjct: 13 FYNSSGYYDEYVWGGAWMYYATGNNSYLQLATTLGIAKRAGAF 141
Score = 51.0 bits (105), Expect(2) = 3e-031
Identities = 28/45 (62%), Positives = 30/45 (66%)
Frame = +3 / -1
Query: 306 PNQYAPACFAIPGAVATVRYELFPVAKYIHAPPHTNSSQ*LVEL* 440
P + APA AIP VA+ R ELFPVA YI APP T SS * EL*
Sbjct: 149 PPRNAPARLAIPNVVAS*R*ELFPVA*YIQAPPQTYSS**PEEL* 15
>gb|BX252161.1|BX252161 BX252161 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP060F09 similar to ENDOGLUCANASE PRECURSOR,
mRNA sequence
Length = 709
Score = 185 bits (399), Expect(2) = 2e-066
Identities = 73/113 (64%), Positives = 86/113 (76%)
Frame = -2 / +3
Query: 652 EXIDYXXXXXECHSCSDLAXXXXAXXXXASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR 473
E +DY +CHSCSDLA A ASIVFKD+K YS KLVKGA L+KF R QRGR
Sbjct: 234 EDVDYPRPVYDCHSCSDLAAETAAALAAASIVFKDNKLYSQKLVKGATTLFKFSREQRGR 413
Query: 472 YSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAY 314
YSP+GSD + FYNS+ Y+DE+VWGGAWMY+ATGNNSYL +AT G+AK AGA+
Sbjct: 414 YSPSGSDASNFYNSSGYYDEYVWGGAWMYYATGNNSYLQLATTLGIAKRAGAF 572
Score = 110 bits (235), Expect(2) = 1e-028
Identities = 58/116 (50%), Positives = 65/116 (56%)
Frame = +3 / -1
Query: 306 PNQYAPACFAIPGAVATVRYELFPVAKYIHAPPHTNSSQ*LVEL*KMAWSDPLGLYRPRC 485
P + APA AIP VA+ R ELFPVA YIHAPP T SS * EL*K+ S PLGLYRP C
Sbjct: 580 PPRNAPARLAIPNVVAS*R*ELFPVA*YIHAPPQTYSS**PEEL*KLEASLPLGLYRPLC 401
Query: 486 SLPNLYRALAPXXXXXXXXXXXXNTMEAXXXXAXXXXARSEQEWHSXXXXX*SMXS 653
SL NL +AP T++A A A+SEQEW S *S S
Sbjct: 400 SLENLKSVVAPLTSFCE*SLLSLKTIDAAAKAAAVSAAKSEQEWQSYTGRG*STSS 233
Score = 87.2 bits (184), Expect(2) = 2e-066
Identities = 32/44 (72%), Positives = 40/44 (90%)
Frame = -2 / +3
Query: 307 GSPNYGVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQ 176
G +YGV +WD+KL GAQVLLSRLRLFLSPGYPYE++L+++HNQ
Sbjct: 576 GGQDYGVXSWDNKLAGAQVLLSRLRLFLSPGYPYEDVLQSYHNQ 707
Score = 35.9 bits (72), Expect(2) = 1e-028
Identities = 19/41 (46%), Positives = 21/41 (51%)
Frame = +3 / -1
Query: 174 VWLWNVLSISS*GYPGXXXXXXXXXXT*APGSLSSQVNTP* 296
VWL + SS GYPG T AP SL SQ+ TP*
Sbjct: 709 VWL**LCKTSSYGYPGLKKSLSLLKRTWAPASLLSQLXTP* 587
>gb|CF479877.1|CF479877 RTWW3_12_D09.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_12_D09_A022 5', mRNA sequence
Length = 700
Score = 203 bits (438), Expect(2) = 1e-062
Identities = 78/102 (76%), Positives = 91/102 (89%)
Frame = -2 / +1
Query: 307 GSPNYGVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFN 128
G +YGV +WD+KL GAQVLLSRLRLFLSPGYPYE++L+++HNQT+ VMCSYLPVF +FN
Sbjct: 91 GGQDYGVLSWDNKLAGAQVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFN 270
Query: 127 FTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGW 2
T+GGLIQLNHGRPQPLQY NAAFLA++YSDYL AAD PGW
Sbjct: 271 RTRGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGW 396
Score = 104 bits (221), Expect(2) = 4e-028
Identities = 51/97 (52%), Positives = 58/97 (59%)
Frame = +3 / -3
Query: 6 PGVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNTGKYEHMTLSVWLW 185
PG+SAA +*SL ARKAA Y G GLPW S I PPLV L TG+YEH+T+ VWL
Sbjct: 392 PGISAAVK*SL*TAARKAAFATYCRGWGLPWFS*IKPPLVLLKVRKTGRYEHITILVWL* 213
Query: 186 NVLSISS*GYPGXXXXXXXXXXT*APGSLSSQVNTP* 296
+ SS GYPG T AP SL SQ+ TP*
Sbjct: 212 *LCKTSSYGYPGLKKSLSLLKRTWAPASLLSQLKTP* 102
Score = 57.0 bits (118), Expect(2) = 1e-062
Identities = 21/29 (72%), Positives = 25/29 (86%)
Frame = -2 / +1
Query: 400 GAWMYFATGNNSYLTVATAPGMAKHAGAY 314
GAWMY+ATGNNSYL +AT G+AK AGA+
Sbjct: 1 GAWMYYATGNNSYLQLATTMGIAKRAGAF 87
Score = 40.5 bits (82), Expect(2) = 4e-028
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = +3 / -3
Query: 306 PNQYAPACFAIPGAVATVRYELFPVAKYIHA 398
P + APA AIP VA+ R ELFPVA YIHA
Sbjct: 95 PPRNAPARLAIPIVVAS*R*ELFPVA*YIHA 3
>gb|AW985166.1|AW985166 NXNV_133_G09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_133_G09 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 455
Score = 178 bits (383), Expect(2) = 2e-054
Identities = 68/97 (70%), Positives = 81/97 (83%)
Frame = -2 / +1
Query: 292 GVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFNFTKGG 113
GVF+WD+KLPGAQ+LL+RLR+FL PGYPYE +L ++HNQT ++CSYLP + SFN T G
Sbjct: 109 GVFSWDNKLPGAQILLTRLRMFLDPGYPYENLLDSYHNQTTILLCSYLPNYKSFNRTXXG 288
Query: 112 LIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGW 2
LIQLNHG P PL Y VNAAFLA+LYSDYL AA+ PGW
Sbjct: 289 LIQLNHGNPXPLXYVVNAAFLAALYSDYLAAANIPGW 399
Score = 89.5 bits (189), Expect(2) = 4e-023
Identities = 46/96 (47%), Positives = 56/96 (58%)
Frame = +3 / -1
Query: 6 PGVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNTGKYEHMTLSVWLW 185
PG+ AA+R*SL ARKAA T Y G G PW + I+P LV LN+L G+YEH + VWL
Sbjct: 395 PGIFAAAR*SL*SAARKAAFTTYXRGXGFPWFN*ISPXLVLLNDL*LGRYEHNKMVVWL* 216
Query: 186 NVLSISS*GYPGXXXXXXXXXXT*APGSLSSQVNTP 293
+ + S G PG APGSL SQ+ TP
Sbjct: 215 *LSNKFSYG*PGSRNILSLVNKIWAPGSLLSQLKTP 108
Score = 54.7 bits (113), Expect(2) = 2e-054
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = -2 / +1
Query: 403 GGAWMYFATGNNSYLTVATAPGMAKHAGAYWFGSPN 296
GGAWMY+ATGN+SYL + T G+AKHA + G+ N
Sbjct: 1 GGAWMYYATGNSSYLQLVTNSGIAKHAASLKGGTLN 108
Score = 38.6 bits (78), Expect(2) = 4e-023
Identities = 19/35 (54%), Positives = 20/35 (57%)
Frame = +3 / -1
Query: 297 FGLPNQYAPACFAIPGAVATVRYELFPVAKYIHAP 401
F +P AC AIP V R E FPVA YIHAP
Sbjct: 107 FKVPPFNEAACLAIPELVTN*R*EEFPVA*YIHAP 3
>gb|AW870019.1|AW870019 NXNV_123_B02_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_123_B02 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 569
Score = 203 bits (438), Expect = 1e-051
Identities = 78/102 (76%), Positives = 91/102 (89%)
Frame = -2 / +3
Query: 307 GSPNYGVFTWDDKLPGAQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFN 128
G +YGV +WD+KL GAQVLLSRLRLFLSPGYPYE++L+++HNQT+ VMCSYLPVF +FN
Sbjct: 12 GGQDYGVLSWDNKLAGAQVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFN 191
Query: 127 FTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGW 2
T+GGLIQLNHGRPQPLQY NAAFLA++YSDYL AAD PGW
Sbjct: 192 RTRGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGW 317
Score = 104 bits (221), Expect = 8e-022
Identities = 51/97 (52%), Positives = 58/97 (59%)
Frame = +3 / -2
Query: 6 PGVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNTGKYEHMTLSVWLW 185
PG+SAA +*SL ARKAA Y G GLPW S I PPLV L TG+YEH+T+ VWL
Sbjct: 313 PGISAAVK*SL*TAARKAAFATYCRGWGLPWFS*IKPPLVLLKVRKTGRYEHITILVWL* 134
Query: 186 NVLSISS*GYPGXXXXXXXXXXT*APGSLSSQVNTP* 296
+ SS GYPG T AP SL SQ+ TP*
Sbjct: 133 *LCKTSSYGYPGLKKSLSLLKRTWAPASLLSQLKTP* 23
>gb|CF479037.1|CF479037 RTWW3_21_G11.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_G11_A022 5', mRNA sequence
Length = 699
Score = 177 bits (382), Expect = 5e-044
Identities = 69/86 (80%), Positives = 79/86 (91%)
Frame = -2 / +2
Query: 259 AQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFNFTKGGLIQLNHGRPQP 80
AQVLLSRLRLFLSPGYPYE++L+++HNQT+ VMCSYLPVF +FN T+GGLIQLNHGRPQP
Sbjct: 206 AQVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRGGLIQLNHGRPQP 385
Query: 79 LQYAVNAAFLASLYSDYLEAADTPGW 2
LQY NAAFLA++YSDYL AAD PGW
Sbjct: 386 LQYVANAAFLAAVYSDYLTAADIPGW 463
>gb|BX255589.1|BX255589 BX255589 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007E03 similar to ENDOGLUCANASE PRECURSOR,
mRNA sequence
Length = 693
Score = 171 bits (369), Expect = 3e-042
Identities = 66/83 (79%), Positives = 76/83 (91%)
Frame = -2 / +3
Query: 250 LLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFNFTKGGLIQLNHGRPQPLQY 71
LLSRLRLFLSPGYPYE++L+++HNQT+ VMCSYLPVF +FN T+GGLIQLNHGRPQPLQY
Sbjct: 3 LLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRGGLIQLNHGRPQPLQY 182
Query: 70 AVNAAFLASLYSDYLEAADTPGW 2
NAAFLA++YSDYL AAD PGW
Sbjct: 183 VANAAFLAAVYSDYLTAADIPGW 251
>gb|BV079723.1| Pp_Korrigan Pinus pinaster megagametophytes Pinus pinaster STS
genomic, sequence tagged site
Length = 937
Score = 95.0 bits (201), Expect(2) = 4e-039
Identities = 36/47 (76%), Positives = 44/47 (93%)
Frame = -2 / +2
Query: 256 QVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFNFTKG 116
QVLLSRLRLFLSPGYPYE++L+++HNQT+ VMCSYLPVF +FN T+G
Sbjct: 155 QVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRG 295
Score = 86.8 bits (183), Expect(2) = 4e-039
Identities = 33/39 (84%), Positives = 35/39 (89%)
Frame = -2 / +3
Query: 118 GGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGW 2
GGLIQLNHGRPQPLQY NAAFLA++YSDYL AAD PGW
Sbjct: 387 GGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGW 503
>gb|CV032886.1|CV032886 RTNACL1_18_H11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_18_H11_A029 5', mRNA sequence
Length = 775
Score = 144 bits (309), Expect = 6e-034
Identities = 61/119 (51%), Positives = 74/119 (62%)
Frame = -2 / +2
Query: 652 EXIDYXXXXXECHSCSDLAXXXXAXXXXASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR 473
E +DY C SDLA A ASIVFKD YS LVKGA L+ F R RGR
Sbjct: 398 EDMDYSRPVTHCSVGSDLAAEMAAALAAASIVFKDDTNYSKVLVKGATTLFTFSRSNRGR 577
Query: 472 YSPNGSDQAIFYNSTSYWDEFVWGGAWMYFATGNNSYLTVATAPGMAKHAGAYWFGSPN 296
YS ++ +YNST Y+DE+VWGGAWMY+ATGN+SYL + T G+AKHA + G+ N
Sbjct: 578 YSQANTEIRQYYNSTGYYDEYVWGGAWMYYATGNSSYLQLVTNSGIAKHAASLKGGTLN 754
>gb|BE657127.1|BE657127 NXCI_064_B11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_064_B11 5' similar to Arabidopsis
thaliana sequence At5g49720 cellulase homolog OR16pep
precursor (pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 245
Score = 120 bits (257), Expect = 9e-027
Identities = 50/81 (61%), Positives = 58/81 (71%)
Frame = -2 / +3
Query: 643 DYXXXXXECHSCSDLAXXXXAXXXXASIVFKDSKTYSDKLVKGAKALYKFGRLQRGRYSP 464
DY +CHSCSDLA A ASI FKD+K YS KLVKGA L+KF R Q RYSP
Sbjct: 3 DYPRPVYDCHSCSDLAAETAAAXXAASIXFKDNKLYSQKLVKGATTLFKFSREQXXRYSP 182
Query: 463 NGSDQAIFYNSTSYWDEFVWG 401
+GSD + FYNS+ Y+DE+VWG
Sbjct: 183 SGSDVSXFYNSSGYYDEYVWG 245
>gb|AW869945.1|AW869945 NXNV_120_C02_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_120_C02 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 557
Score = 119 bits (255), Expect = 2e-026
Identities = 49/89 (55%), Positives = 57/89 (64%)
Frame = -2 / +3
Query: 652 EXIDYXXXXXECHSCSDLAXXXXAXXXXASIVFKDSKTYSDKLVKGAKALYKFGRLQRGR 473
E +DY +CHSCSDLA A ASIVFKD+K YS KLVKGA L+KF R Q
Sbjct: 288 EDVDYPRPVYDCHSCSDLAAETAAALAAASIVFKDNKLYSQKLVKGATTLFKFSREQXXX 467
Query: 472 YSPNGSDQAIFYNSTSYWDEFVWGGAWMY 386
YSP+GSD YNS+ Y+DE VWG M+
Sbjct: 468 YSPSGSDVXKXYNSSXYYDEXVWGXXXMF 554
>gb|AW984943.1|AW984943 NXNV_106_A11_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_106_A11 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 225
Score = 116 bits (249), Expect = 1e-025
Identities = 46/71 (64%), Positives = 54/71 (76%)
Frame = -2 / +3
Query: 583 AXXXXASIVFKDSKTYSDKLVKGAKALYKFGRLQRGRYSPNGSDQAIFYNSTSYWDEFVW 404
A ASIVFKD+K YS KLVKGA L+KF R Q RYSP+GSD + FYNS+ Y+DE+VW
Sbjct: 12 AALAAASIVFKDNKLYSQKLVKGATTLFKFSREQXXRYSPSGSDVSKFYNSSGYYDEYVW 191
Query: 403 GGAWMYFATGN 371
G AWMY+AT N
Sbjct: 192 GXAWMYYATXN 224
>gb|BQ699769.1|BQ699769 NXRV128_G04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV128_G04 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 512
Score = 109 bits (232), Expect = 3e-023
Identities = 42/52 (80%), Positives = 46/52 (88%)
Frame = -2 / +2
Query: 157 SYLPVFNSFNFTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGW 2
SYLPVF +FN T+GGLIQLNHGRPQPLQY NAAFLA++YSDYL AAD PGW
Sbjct: 2 SYLPVFRTFNRTRGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGW 157
>gb|DR096991.1|DR096991 STRR1_31_E11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_31_E11_A033 5', mRNA sequence
Length = 796
Score = 104 bits (221), Expect = 8e-022
Identities = 40/50 (80%), Positives = 44/50 (88%)
Frame = -2 / +2
Query: 151 LPVFNSFNFTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAADTPGW 2
LPVF +FN T+GGLIQLNHGRPQPLQY NAAFLA++YSDYL AAD PGW
Sbjct: 2 LPVFRTFNRTRGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGW 151
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 312,807,919
Number of Sequences: 355925
Number of extensions: 4178366
Number of successful extensions: 34192
Number of sequences better than 1.0e-020: 26
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9543423165
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)