TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE8g03.yg.2.1
(360 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT634393.1|DT634393 EST1149324 Normalized pine embryo li... 118 5e-034
gb|DR687633.1|DR687633 EST1077715 Normalized pine embryo li... 118 5e-034
gb|CX715653.1|CX715653 RTPQ1_35_D08.g1_A032 Roots treated w... 106 4e-027
gb|CX651163.1|CX651163 COLD1_50_C05.g1_A029 Root cold Pinus... 106 4e-027
gb|DR057730.1|DR057730 RTNIT1_7_B04.g1_A029 Roots minus nit... 106 6e-027
gb|CO366556.1|CO366556 RTK1_28_C09.g1_A029 Roots minus pota... 106 6e-027
gb|DR057381.1|DR057381 RTNIT1_5_B04.g1_A029 Roots minus nit... 106 6e-027
gb|DR110696.1|DR110696 RTS1_12_H11.b1_A029 Roots minus sulf... 106 6e-027
gb|DR168855.1|DR168855 RTPHOS1_28_G05.b1_A029 Roots minus p... 106 6e-027
gb|DR110783.1|DR110783 RTS1_12_H11.g1_A029 Roots minus sulf... 106 6e-027
gb|CX648692.1|CX648692 COLD1_30_F12.b1_A029 Root cold Pinus... 106 6e-027
gb|CX651090.1|CX651090 COLD1_50_C05.b1_A029 Root cold Pinus... 106 6e-027
gb|CO197674.1|CO197674 GEO1_8_E04.b1_A029 Root gravitropism... 106 6e-027
gb|CX648762.1|CX648762 COLD1_30_F12.g1_A029 Root cold Pinus... 106 8e-027
gb|DR089646.1|DR089646 RTAL1_10_B02.b1_A029 Roots plus adde... 102 8e-027
>gb|DT634393.1|DT634393 EST1149324 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG549 3' end, mRNA sequence
Length = 827
Score = 118 bits (253), Expect(2) = 5e-034
Identities = 44/68 (64%), Positives = 58/68 (85%)
Frame = -3 / +1
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYLFVRWGL V NM++ GE GDTD+EEML+GLHKT+I++G ++GSE LLR GSY+++
Sbjct: 502 RYLFVRWGLDVANMHVFVGETGDTDYEEMLAGLHKTIILKGAVDRGSEKLLRGSGSYQRE 681
Query: 34 DVVPSETP 11
D+VPSE+P
Sbjct: 682 DIVPSESP 705
Score = 44.6 bits (91), Expect(2) = 5e-034
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = -3 / +1
Query: 358 CRNSTRLQVVPLLASRSQALR 296
CRNST+L V+PLLASRSQALR
Sbjct: 442 CRNSTQLHVIPLLASRSQALR 504
>gb|DR687633.1|DR687633 EST1077715 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABU74 3' end, mRNA sequence
Length = 797
Score = 118 bits (253), Expect(2) = 5e-034
Identities = 44/68 (64%), Positives = 58/68 (85%)
Frame = -3 / +2
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYLFVRWGL V NM++ GE GDTD+EEML+GLHKT+I++G ++GSE LLR GSY+++
Sbjct: 494 RYLFVRWGLDVANMHVFVGETGDTDYEEMLAGLHKTIILKGAVDRGSEKLLRGSGSYQRE 673
Query: 34 DVVPSETP 11
D+VPSE+P
Sbjct: 674 DIVPSESP 697
Score = 44.6 bits (91), Expect(2) = 5e-034
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = -3 / +2
Query: 358 CRNSTRLQVVPLLASRSQALR 296
CRNST+L V+PLLASRSQALR
Sbjct: 434 CRNSTQLHVIPLLASRSQALR 496
>gb|CX715653.1|CX715653 RTPQ1_35_D08.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_35_D08_A032 5', mRNA sequence
Length = 603
Score = 106 bits (227), Expect(2) = 4e-027
Identities = 40/68 (58%), Positives = 52/68 (76%)
Frame = -3 / +1
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYL+VRWGL + NMY+ GE GDTD+EE++ G+HKT+I++G GSE +LRSP SY
Sbjct: 127 RYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGTVVDGSEKMLRSPTSYGSG 306
Query: 34 DVVPSETP 11
DV PSE+P
Sbjct: 307 DVFPSESP 330
Score = 32.7 bits (65), Expect(2) = 4e-027
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / +1
Query: 355 RNSTRLQVVPLLASRSQALR 296
+N +RL+V+PL ASRSQALR
Sbjct: 70 QNCSRLRVLPLHASRSQALR 129
>gb|CX651163.1|CX651163 COLD1_50_C05.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_50_C05_A029 5', mRNA sequence
Length = 608
Score = 106 bits (227), Expect(2) = 4e-027
Identities = 40/68 (58%), Positives = 52/68 (76%)
Frame = -3 / +2
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYL+VRWGL + NMY+ GE GDTD+EE++ G+HKT+I++G GSE +LRSP SY
Sbjct: 71 RYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGTVVDGSEKMLRSPTSYGSG 250
Query: 34 DVVPSETP 11
DV PSE+P
Sbjct: 251 DVFPSESP 274
Score = 32.7 bits (65), Expect(2) = 4e-027
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / +2
Query: 355 RNSTRLQVVPLLASRSQALR 296
+N +RL+V+PL ASRSQALR
Sbjct: 14 QNCSRLRVLPLHASRSQALR 73
>gb|DR057730.1|DR057730 RTNIT1_7_B04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_7_B04_A029 5', mRNA sequence
Length = 929
Score = 106 bits (227), Expect(2) = 6e-027
Identities = 40/68 (58%), Positives = 52/68 (76%)
Frame = -3 / +3
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYL+VRWGL + NMY+ GE GDTD+EE++ G+HKT+I++G GSE +LRSP SY
Sbjct: 417 RYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGTVVDGSEKMLRSPTSYGSG 596
Query: 34 DVVPSETP 11
DV PSE+P
Sbjct: 597 DVFPSESP 620
Score = 32.7 bits (65), Expect(2) = 6e-027
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / +3
Query: 355 RNSTRLQVVPLLASRSQALR 296
+N +RL+V+PL ASRSQALR
Sbjct: 360 QNCSRLRVLPLHASRSQALR 419
>gb|CO366556.1|CO366556 RTK1_28_C09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_28_C09_A029 5', mRNA sequence
Length = 851
Score = 106 bits (227), Expect(2) = 6e-027
Identities = 40/68 (58%), Positives = 52/68 (76%)
Frame = -3 / -2
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYL+VRWGL + NMY+ GE GDTD+EE++ G+HKT+I++G GSE +LRSP SY
Sbjct: 466 RYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGTVVDGSEKMLRSPTSYGSG 287
Query: 34 DVVPSETP 11
DV PSE+P
Sbjct: 286 DVFPSESP 263
Score = 32.7 bits (65), Expect(2) = 6e-027
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / -2
Query: 355 RNSTRLQVVPLLASRSQALR 296
+N +RL+V+PL ASRSQALR
Sbjct: 523 QNCSRLRVLPLHASRSQALR 464
>gb|DR057381.1|DR057381 RTNIT1_5_B04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_5_B04_A029 5', mRNA sequence
Length = 829
Score = 106 bits (227), Expect(2) = 6e-027
Identities = 40/68 (58%), Positives = 52/68 (76%)
Frame = -3 / +3
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYL+VRWGL + NMY+ GE GDTD+EE++ G+HKT+I++G GSE +LRSP SY
Sbjct: 423 RYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGTVVDGSEKMLRSPTSYGSG 602
Query: 34 DVVPSETP 11
DV PSE+P
Sbjct: 603 DVFPSESP 626
Score = 32.7 bits (65), Expect(2) = 6e-027
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / +3
Query: 355 RNSTRLQVVPLLASRSQALR 296
+N +RL+V+PL ASRSQALR
Sbjct: 366 QNCSRLRVLPLHASRSQALR 425
>gb|DR110696.1|DR110696 RTS1_12_H11.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_H11_A029 3', mRNA sequence
Length = 763
Score = 106 bits (227), Expect(2) = 6e-027
Identities = 40/68 (58%), Positives = 52/68 (76%)
Frame = -3 / +1
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYL+VRWGL + NMY+ GE GDTD+EE++ G+HKT+I++G GSE +LRSP SY
Sbjct: 268 RYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGTVVDGSEKMLRSPTSYGSG 447
Query: 34 DVVPSETP 11
DV PSE+P
Sbjct: 448 DVFPSESP 471
Score = 32.7 bits (65), Expect(2) = 6e-027
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / +1
Query: 355 RNSTRLQVVPLLASRSQALR 296
+N +RL+V+PL ASRSQALR
Sbjct: 211 QNCSRLRVLPLHASRSQALR 270
>gb|DR168855.1|DR168855 RTPHOS1_28_G05.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_28_G05_A029 3', mRNA sequence
Length = 763
Score = 106 bits (227), Expect(2) = 6e-027
Identities = 40/68 (58%), Positives = 52/68 (76%)
Frame = -3 / +2
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYL+VRWGL + NMY+ GE GDTD+EE++ G+HKT+I++G GSE +LRSP SY
Sbjct: 125 RYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGTVVDGSEKMLRSPTSYGSG 304
Query: 34 DVVPSETP 11
DV PSE+P
Sbjct: 305 DVFPSESP 328
Score = 32.7 bits (65), Expect(2) = 6e-027
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / +2
Query: 355 RNSTRLQVVPLLASRSQALR 296
+N +RL+V+PL ASRSQALR
Sbjct: 68 QNCSRLRVLPLHASRSQALR 127
>gb|DR110783.1|DR110783 RTS1_12_H11.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_H11_A029 5', mRNA sequence
Length = 759
Score = 106 bits (227), Expect(2) = 6e-027
Identities = 40/68 (58%), Positives = 52/68 (76%)
Frame = -3 / +2
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYL+VRWGL + NMY+ GE GDTD+EE++ G+HKT+I++G GSE +LRSP SY
Sbjct: 230 RYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGTVVDGSEKMLRSPTSYGSG 409
Query: 34 DVVPSETP 11
DV PSE+P
Sbjct: 410 DVFPSESP 433
Score = 32.7 bits (65), Expect(2) = 6e-027
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / +2
Query: 355 RNSTRLQVVPLLASRSQALR 296
+N +RL+V+PL ASRSQALR
Sbjct: 173 QNCSRLRVLPLHASRSQALR 232
>gb|CX648692.1|CX648692 COLD1_30_F12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_30_F12_A029 3', mRNA sequence
Length = 705
Score = 106 bits (227), Expect(2) = 6e-027
Identities = 40/68 (58%), Positives = 52/68 (76%)
Frame = -3 / +2
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYL+VRWGL + NMY+ GE GDTD+EE++ G+HKT+I++G GSE +LRSP SY
Sbjct: 83 RYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGTVVDGSEKMLRSPTSYGSG 262
Query: 34 DVVPSETP 11
DV PSE+P
Sbjct: 263 DVFPSESP 286
Score = 32.7 bits (65), Expect(2) = 6e-027
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / +2
Query: 355 RNSTRLQVVPLLASRSQALR 296
+N +RL+V+PL ASRSQALR
Sbjct: 26 QNCSRLRVLPLHASRSQALR 85
>gb|CX651090.1|CX651090 COLD1_50_C05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_50_C05_A029 3', mRNA sequence
Length = 699
Score = 106 bits (227), Expect(2) = 6e-027
Identities = 40/68 (58%), Positives = 52/68 (76%)
Frame = -3 / +3
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYL+VRWGL + NMY+ GE GDTD+EE++ G+HKT+I++G GSE +LRSP SY
Sbjct: 78 RYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGTVVDGSEKMLRSPTSYGSG 257
Query: 34 DVVPSETP 11
DV PSE+P
Sbjct: 258 DVFPSESP 281
Score = 32.7 bits (65), Expect(2) = 6e-027
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / +3
Query: 355 RNSTRLQVVPLLASRSQALR 296
+N +RL+V+PL ASRSQALR
Sbjct: 21 QNCSRLRVLPLHASRSQALR 80
>gb|CO197674.1|CO197674 GEO1_8_E04.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_8_E04_A029 3', mRNA sequence
Length = 669
Score = 106 bits (227), Expect(2) = 6e-027
Identities = 40/68 (58%), Positives = 52/68 (76%)
Frame = -3 / +3
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYL+VRWGL + NMY+ GE GDTD+EE++ G+HKT+I++G GSE +LRSP SY
Sbjct: 195 RYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGTVVDGSEKMLRSPTSYGSG 374
Query: 34 DVVPSETP 11
DV PSE+P
Sbjct: 375 DVFPSESP 398
Score = 32.7 bits (65), Expect(2) = 6e-027
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / +3
Query: 355 RNSTRLQVVPLLASRSQALR 296
+N +RL+V+PL ASRSQALR
Sbjct: 138 QNCSRLRVLPLHASRSQALR 197
>gb|CX648762.1|CX648762 COLD1_30_F12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_30_F12_A029 5', mRNA sequence
Length = 659
Score = 106 bits (226), Expect(2) = 8e-027
Identities = 40/68 (58%), Positives = 52/68 (76%)
Frame = -3 / +2
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYL+VRWGL + NMY+ GE GDTD+EE++ G+HKT+I++G GSE +LRSP SY
Sbjct: 56 RYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGTVVYGSEKMLRSPTSYGSG 235
Query: 34 DVVPSETP 11
DV PSE+P
Sbjct: 236 DVFPSESP 259
Score = 32.2 bits (64), Expect(2) = 8e-027
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = -3 / +2
Query: 352 NSTRLQVVPLLASRSQALR 296
N +RL+V+PL ASRSQALR
Sbjct: 2 NCSRLRVLPLHASRSQALR 58
>gb|DR089646.1|DR089646 RTAL1_10_B02.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_10_B02_A029 3', mRNA sequence
Length = 882
Score = 102 bits (218), Expect(2) = 8e-027
Identities = 39/64 (60%), Positives = 49/64 (76%)
Frame = -3 / +3
Query: 214 RYLFVRWGLYVGNMYLITGEHGDTDHEEMLSGLHKTVIVRGVTEKGSEGLLRSPGSYKKD 35
RYLF RWG+ V NM++ GE GDTD+EE+L GLHKT+I++G + G E LLRS SY K+
Sbjct: 105 RYLFTRWGMEVTNMFVFIGETGDTDYEELLGGLHKTIILKGTVDNGCENLLRSNSSYVKE 284
Query: 34 DVVP 23
DVVP
Sbjct: 285 DVVP 296
Score = 36.3 bits (73), Expect(2) = 8e-027
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3 / +3
Query: 358 CRNSTRLQVVPLLASRSQALR 296
C ++L V+PLLASRSQALR
Sbjct: 45 CHKGSKLHVIPLLASRSQALR 107
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 211,336,103
Number of Sequences: 355925
Number of extensions: 3165574
Number of successful extensions: 94292
Number of sequences better than 1.0e-020: 15
length of database: 72,425,745
effective HSP length: 49
effective length of database: 54,985,420
effective search space used: 3848979400
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)