TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAE37h07.yg.2.1
         (642 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO159016.1|CO159016  FLD1_10_F07.g1_A029 Root flooded Pin...   173   3e-045
gb|BG317521.1|BG317521  NXPV_002_G06_F NXPV (Nsf Xylem Plani...   160   8e-039
gb|BQ696956.1|BQ696956  NXPV_047_C11_F NXPV (Nsf Xylem Plani...   153   1e-036
gb|DR388038.1|DR388038  RTHG1_25_F10.g1_A029 Roots plus adde...   124   7e-028

>gb|CO159016.1|CO159016 FLD1_10_F07.g1_A029 Root flooded Pinus taeda cDNA clone
           FLD1_10_F07_A029 5', mRNA sequence
          Length = 796

 Score =  173 bits (372), Expect(2) = 3e-045
 Identities = 69/128 (53%), Positives = 81/128 (63%)
 Frame = -2 / +3

                                                                       
Query: 533 FITMQLQXCSVFXXFSLXTXXXXXGXXILHXXAKYRATXRGFVVXHIXFAENYRLYSXSH 354
           F+ MQLQ  +VF  FSL T     G  +LH  AKYR T RGFVV H  FAENYR YS SH
Sbjct: 36  FVIMQLQMAAVFFTFSLGTKTHYYGRTLLHGGAKYRGTGRGFVVFHAKFAENYRFYSRSH 215

                                                                       
Query: 353 FVKALEVAXXXXXXIAYXXXXGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKTVE 174
           FVK LE+         Y      +  +ILIT S WF+V +WLFAP++FNPSGFEWQK V+
Sbjct: 216 FVKGLELMLLLIVYTVYSQAHRKTVPYILITYSMWFMVGAWLFAPFLFNPSGFEWQKIVD 395

                   
Query: 173 DFDDWTXW 150
           D+ DW  W
Sbjct: 396 DWTDWNKW 419




 Score = 28.6 bits (56), Expect(2) = 3e-045
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2 / +3

                              
Query: 62  RGRILETIXXXRFLMFQYG 6
           R RI E +   RFL++QYG
Sbjct: 513 RARIFEILLSFRFLLYQYG 569



>gb|BG317521.1|BG317521 NXPV_002_G06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
           cDNA clone NXPV_002_G06 5' similar to Arabidopsis
           thaliana sequence At5g13000 callose synthase catalytic
           subunit -like protein see
           http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 421

 Score =  160 bits (344), Expect = 8e-039
 Identities = 63/118 (53%), Positives = 76/118 (64%)
 Frame = -2 / +1

                                                                       
Query: 503 VFXXFSLXTXXXXXGXXILHXXAKYRATXRGFVVXHIXFAENYRLYSXSHFVKALEVAXX 324
           VF  FSL T     G  +LH  AKYRAT RGFVV H  FA+NYR YS SHFVK LE+   
Sbjct: 1   VFFTFSLGTKTHYYGRTLLHGGAKYRATGRGFVVFHAKFADNYRFYSRSHFVKGLELMLL 180

                                                                     
Query: 323 XXXXIAYXXXXGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFDDWTXW 150
                 Y      + +++LIT S WF+V +WLFAP++FNPSGFEWQK V+D+ DW  W
Sbjct: 181 LIVYNVYGQPYRNTIAYLLITFSMWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWNKW 354



>gb|BQ696956.1|BQ696956 NXPV_047_C11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
           cDNA clone NXPV_047_C11 5' similar to Arabidopsis
           thaliana sequence At5g13000 callose synthase catalytic
           subunit -like protein see
           http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 601

 Score =  153 bits (328), Expect = 1e-036
 Identities = 69/148 (46%), Positives = 84/148 (56%)
 Frame = -2 / +2

                                                                       
Query: 638 AAXNAQFLVXXGIXXXVXMIMGXILXLXXMXXVXXFITMQLQXCSVFXXFSLXTXXXXXG 459
           A   +Q LV  G+   + M+M   L       +  F+ MQLQ  SVF  FSL T     G
Sbjct: 134 AVLASQSLVQIGLLMALPMVMEIGLERGFRSALSDFVIMQLQLASVFFTFSLGTKTHYFG 313

                                                                       
Query: 458 XXILHXXAKYRATXRGFVVXHIXFAENYRLYSXSHFVKALEVAXXXXXXIAYXXXXGGSS 279
             ILH  AKYRAT RGFVV H  +AENYRLYS SHF K LE+         Y        
Sbjct: 314 RTILHGGAKYRATGRGFVVRHEKYAENYRLYSRSHFTKGLELMMLLFVYNIYCSAAKDFV 493

                                       
Query: 278 SFILITISSWFLVMSWLFAPYIFNPSGF 195
           S++LIT+S WFLV++WLFAP++FNP  F
Sbjct: 494 SYLLITLSMWFLVVTWLFAPFLFNPXXF 577



>gb|DR388038.1|DR388038 RTHG1_25_F10.g1_A029 Roots plus added mercury Pinus taeda cDNA
           clone RTHG1_25_F10_A029 5', mRNA sequence
          Length = 753

 Score =  124 bits (265), Expect = 7e-028
 Identities = 55/97 (56%), Positives = 60/97 (61%)
 Frame = -2 / +1

                                                                       
Query: 638 AAXNAQFLVXXGIXXXVXMIMGXILXLXXMXXVXXFITMQLQXCSVFXXFSLXTXXXXXG 459
           AA N QFL   GI   V MIMG IL    +  +  F TMQLQ CS+F  FSL T     G
Sbjct: 463 AALNTQFLFQIGIFTAVPMIMGFILEQGFLKAIVSFFTMQLQLCSIFFTFSLGTRTHYFG 642

                                                
Query: 458 XXILHXXAKYRATXRGFVVXHIXFAENYRLYSXSHFV 348
             ILH  A Y+AT RGFVV HI FA+NYRLYS SHFV
Sbjct: 643 RTILHGGAXYKATGRGFVVQHIKFADNYRLYSRSHFV 753



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 192,329,760
Number of Sequences: 355925
Number of extensions: 1667420
Number of successful extensions: 14285
Number of sequences better than 1.0e-020: 7
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 8680740845
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)