TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE36e08.yg.2.1
(352 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR060986.1|DR060986 RTNIT1_31_G11.b1_A029 Roots minus ni... 161 2e-039
gb|CX651998.1|CX651998 COLD1_56_E11.b1_A029 Root cold Pinus... 160 4e-039
gb|CO366300.1|CO366300 RTK1_27_B12.b1_A029 Roots minus pota... 159 9e-039
gb|DR116909.1|DR116909 RTMG1_3_C03.g1_A029 Roots minus magn... 159 9e-039
gb|AF132122.1|AF132122 Pinus taeda laccase (Lac4) mRNA, com... 154 3e-037
gb|BX249680.1|BX249680 BX249680 Pinus pinaster differenciat... 152 1e-036
gb|DR023255.1|DR023255 STRS1_56_A07.g1_A034 Shoot tip pitch... 151 2e-036
gb|DR100018.1|DR100018 STRR1_61_B02.b1_A033 Stem Response R... 151 2e-036
gb|AW698218.1|AW698218 NXNV_070_B03_F Nsf Xylem Normal wood... 150 3e-036
gb|CD027829.1|CD027829 NXNV_070_B03 Nsf Xylem Normal wood V... 150 3e-036
gb|BX682700.1|BX682700 BX682700 Pinus pinaster differenciat... 150 3e-036
gb|CX646584.1|CX646584 COLD1_10_F02.b1_A029 Root cold Pinus... 150 3e-036
gb|DR048956.1|DR048956 RTBOR1_12_G09.b1_A029 Roots plus add... 150 3e-036
gb|CF398272.1|CF398272 RTDS3_24_F12.g1_A022 Drought-stresse... 149 5e-036
gb|CF473790.1|CF473790 RTWW2_4_G02.g1_A021 Well-watered lob... 148 1e-035
gb|BM133931.1|BM133931 NXLV_014_C06_F NXLV (Nsf Xylem Late ... 148 2e-035
gb|DR099105.1|DR099105 STRR1_53_D12.b1_A033 Stem Response R... 148 2e-035
gb|BQ698187.1|BQ698187 NXPV_067_E05_F NXPV (Nsf Xylem Plani... 147 4e-035
gb|BX250000.1|BX250000 BX250000 Pinus pinaster differenciat... 146 5e-035
gb|BG040338.1|BG040338 NXSI_107_B08_F NXSI (Nsf Xylem Side ... 146 5e-035
dbj|BD224536.1| Materials and methods for the modification ... 145 9e-035
gb|BF516615.1|BF516615 NXSI_001_A05_F NXSI (Nsf Xylem Side ... 145 1e-034
gb|BQ700010.1|BQ700010 NXRV133_A09_F NXRV (Nsf Xylem Root w... 145 1e-034
gb|DR178837.1|DR178837 RTMNUT1_14_G02.b1_A029 Roots minus m... 145 1e-034
gb|AF132120.1|AF132120 Pinus taeda laccase (Lac2) mRNA, com... 145 1e-034
gb|BQ702500.1|BQ702500 NXSI_129_D01_F NXSI (Nsf Xylem Side ... 142 1e-033
gb|AW869960.1|AW869960 NXNV_120_D07_F Nsf Xylem Normal wood... 141 2e-033
gb|CF474552.1|CF474552 RTWW2_9_H03.g1_A021 Well-watered lob... 141 2e-033
gb|BQ700495.1|BQ700495 NXRV107_D09_F NXRV (Nsf Xylem Root w... 138 1e-032
gb|BQ702361.1|BQ702361 NXSI_127_G10_F NXSI (Nsf Xylem Side ... 133 1e-032
gb|DR071593.1|DR071593 RTDK1_20_H07.g1_A029 Roots, dark Pin... 136 7e-032
gb|DR012672.1|DR012672 HEAT1_14_G05.b1_A029 Root at 37 C fo... 135 1e-031
gb|DR100078.1|DR100078 STRR1_61_B02.g1_A033 Stem Response R... 128 1e-031
gb|DR019426.1|DR019426 STRS1_30_A03.b1_A034 Shoot tip pitch... 134 2e-031
gb|DR102424.1|DR102424 STRR1_81_B02.b1_A033 Stem Response R... 134 2e-031
gb|DR387570.1|DR387570 RTHG1_22_E12.g2_A029 Roots plus adde... 134 2e-031
gb|CF671437.1|CF671437 RTCNT1_57_C11.b1_A029 Root control P... 133 5e-031
gb|BF778997.1|BF778997 NXSI_091_H05_F NXSI (Nsf Xylem Side ... 132 9e-031
gb|CF473814.1|CF473814 RTWW2_19_B04.b1_A021 Well-watered lo... 132 9e-031
gb|AH013933.1|SEG_AY645907S Pinus taeda laccase-like multic... 132 9e-031
gb|AY645909.1|AY645907S3 Pinus taeda laccase-like multicopp... 132 9e-031
gb|DR384963.1|DR384963 RTHG1_5_F06.g1_A029 Roots plus added... 132 1e-030
gb|BE758677.1|BE758677 NXCI_069_H10_F NXCI (Nsf Xylem Compr... 131 2e-030
gb|BM492879.1|BM492879 NXRV_033_D05_F NXRV (Nsf Xylem Root ... 130 4e-030
gb|AW985001.1|AW985001 NXNV_118_H12_F Nsf Xylem Normal wood... 128 1e-029
gb|DR384889.1|DR384889 RTHG1_5_F06.b1_A029 Roots plus added... 128 1e-029
gb|DR014270.1|DR014270 HEAT1_24_A10.g1_A029 Root at 37 C fo... 126 8e-029
gb|DR099176.1|DR099176 STRR1_53_D12.g1_A033 Stem Response R... 99 1e-027
gb|BX784061.1|BX784061 BX784061 Pinus pinaster differenciat... 117 3e-026
gb|CO197243.1|CO197243 GEO1_4_H02.g1_A029 Root gravitropism... 110 1e-025
gb|BQ290899.1|BQ290899 NXRV051_B03_F NXRV (Nsf Xylem Root w... 111 1e-024
gb|BQ634466.1|BQ634466 NXRV069_C08_F NXRV (Nsf Xylem Root w... 111 2e-024
gb|DR071515.1|DR071515 RTDK1_20_H07.b1_A029 Roots, dark Pin... 111 2e-024
gb|BQ701805.1|BQ701805 NXSI_120_G05_F NXSI (Nsf Xylem Side ... 79 4e-024
gb|CF396215.1|CF396215 RTDS2_15_G11.g1_A021 Drought-stresse... 79 5e-024
gb|AH013942.1|SEG_AY645937S Pinus taeda laccase-like multic... 99 7e-024
gb|CO200292.1|CO200292 GEO2_6_C07.g1_A032 Root gravitropism... 79 7e-024
gb|AY645939.1|AY645937S3 Pinus taeda laccase-like multicopp... 99 7e-024
gb|DR088995.1|DR088995 RTAL1_6_A01.b1_A029 Roots plus added... 79 7e-024
gb|CF398957.1|CF398957 RTDS3_11_G12.g1_A022 Drought-stresse... 79 7e-024
gb|CX647335.1|CX647335 COLD1_15_H08.b1_A029 Root cold Pinus... 107 3e-023
gb|AF132125.1|AF132125 Pinus taeda laccase (Lac7) mRNA, com... 77 3e-023
gb|BX255375.1|BX255375 BX255375 Pinus pinaster differenciat... 81 1e-022
gb|AF132126.1|AF132126 Pinus taeda laccase (Lac8) mRNA, com... 81 2e-022
gb|DR178921.1|DR178921 RTMNUT1_14_G02.g1_A029 Roots minus m... 104 2e-022
gb|CO200210.1|CO200210 GEO2_6_C07.b1_A032 Root gravitropism... 79 4e-022
gb|CO362368.1|CO362368 RTK1_3_D05.b1_A029 Roots minus potas... 81 3e-021
gb|CO170045.1|CO170045 NDL1_11_G10.b1_A029 Needles control ... 100 4e-021
gb|DR089078.1|DR089078 RTAL1_6_A01.g1_A029 Roots plus added... 79 7e-021
gb|BX249384.1|BX249384 BX249384 Pinus pinaster differenciat... 71 9e-021
>gb|DR060986.1|DR060986 RTNIT1_31_G11.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_31_G11_A029 3', mRNA sequence
Length = 842
Score = 161 bits (346), Expect = 2e-039
Identities = 63/115 (54%), Positives = 78/115 (67%)
Frame = -1 / +3
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF LP SLLQAHY IPGVFT DFP PPV FD+T+QNV A
Sbjct: 45 CGGPNGKRSTASMNNISFVLPRMFSLLQAHYFGIPGVFTKDFPDNPPVQFDYTAQNVSTA 224
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
LW PV+GT++ ++Y + VQI+ Q T I E HP+H+HGY FY++ GFGN+DP
Sbjct: 225 LWAPVQGTKVKVLKYNSAVQIILQGTSIVTGENHPIHLHGYDFYIVGEGFGNFDP 389
>gb|CX651998.1|CX651998 COLD1_56_E11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_56_E11_A029 3', mRNA sequence
Length = 689
Score = 160 bits (344), Expect = 4e-039
Identities = 63/115 (54%), Positives = 79/115 (68%)
Frame = -1 / -1
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF LP T S+LQAHY G+FT FP PPV FD+T+QNV R+
Sbjct: 674 CGGPNGTRFTASMNNISFVLPSTFSILQAHYLGRKGIFTTGFPDNPPVQFDYTAQNVSRS 495
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
LW PVKGT++ ++Y A VQI+ QDT I AE HP+H+HGY FY++ GFGNY+P
Sbjct: 494 LWSPVKGTKVKVLKYNAKVQIILQDTNIVNAENHPIHLHGYDFYIVGEGFGNYNP 330
>gb|CO366300.1|CO366300 RTK1_27_B12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_B12_A029 3', mRNA sequence
Length = 803
Score = 159 bits (341), Expect = 9e-039
Identities = 61/105 (58%), Positives = 76/105 (72%)
Frame = -1 / +2
Query: 316 ASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRL 137
ASM +SF LP SLLQAHY IPGVFT DFP PPV FD+T+QNV ALW PV+GT++
Sbjct: 29 ASMNNISFVLPRMFSLLQAHYFGIPGVFTKDFPDNPPVQFDYTAQNVSTALWAPVQGTKV 208
Query: 136 YRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
++Y + VQI+ Q T I E HP+H+HGY FY++ GFGN+DP
Sbjct: 209 KVLKYNSAVQIILQGTSIVTGENHPIHLHGYDFYIVGEGFGNFDP 343
>gb|DR116909.1|DR116909 RTMG1_3_C03.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_3_C03_A029 5', mRNA sequence
Length = 905
Score = 159 bits (341), Expect = 9e-039
Identities = 61/105 (58%), Positives = 76/105 (72%)
Frame = -1 / +2
Query: 316 ASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRL 137
ASM +SF LP SLLQAHY IPGVFT DFP PPV FD+T+QNV ALW PV+GT++
Sbjct: 29 ASMNNISFVLPRMFSLLQAHYFGIPGVFTKDFPDNPPVQFDYTAQNVSTALWAPVQGTKV 208
Query: 136 YRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
++Y + VQI+ Q T I E HP+H+HGY FY++ GFGN+DP
Sbjct: 209 KVLKYNSAVQIILQGTSIVTGENHPIHLHGYDFYIVGEGFGNFDP 343
>gb|AF132122.1|AF132122 Pinus taeda laccase (Lac4) mRNA, complete cds
Length = 2208
Score = 154 bits (330), Expect = 3e-037
Identities = 59/115 (51%), Positives = 76/115 (66%)
Frame = -1 / +3
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM SF LP T S+L+A + + GVF+ DFP PPV FD+T+QNV R
Sbjct: 1245 CGGPNGSRFAASMNNASFVLPTTSSILEAQHFGMKGVFSGDFPDNPPVQFDYTAQNVSRG 1424
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
LW PVK TR+ + Y VQ++ Q T IFA E HP+H+HGY FY++ +GFGNY+P
Sbjct: 1425 LWSPVKSTRVKILNYNTTVQVILQGTNIFAGESHPIHLHGYDFYIVGSGFGNYNP 1589
>gb|BX249680.1|BX249680 BX249680 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP027A08 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 660
Score = 152 bits (326), Expect = 1e-036
Identities = 60/114 (52%), Positives = 75/114 (65%)
Frame = -1 / +1
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM VSF LP T S+LQA + + GVFT DFP PPV FD+T++NV R
Sbjct: 106 CGGPNGSRFAASMNNVSFVLPRTSSILQAQHFGVKGVFTMDFPDNPPVQFDYTARNVSRG 285
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
LW PVK T++ + Y VQ+V Q T IFA E HP+H+HGY FY++ GFGNY+
Sbjct: 286 LWSPVKSTKVKVLNYNTTVQVVLQGTNIFAGESHPIHLHGYDFYIVGAGFGNYN 447
>gb|DR023255.1|DR023255 STRS1_56_A07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_56_A07_A034 5', mRNA sequence
Length = 774
Score = 151 bits (324), Expect = 2e-036
Identities = 58/114 (50%), Positives = 74/114 (64%)
Frame = -1 / +3
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF LP T S+LQA Y I GVF+ DFP P V FD+T N+ R
Sbjct: 150 CGGPNGTRFAASMNNISFVLPKTSSILQAQYFGIKGVFSRDFPDSPAVTFDYTGNNISRG 329
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
LW PVK TR+ ++Y VQ++ Q T IFA E HP+H+HGY FY++ +GFGNY+
Sbjct: 330 LWSPVKDTRVKVLKYNTTVQVILQGTNIFAGESHPIHLHGYDFYIVGSGFGNYN 491
>gb|DR100018.1|DR100018 STRR1_61_B02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_61_B02_A033 3', mRNA sequence
Length = 860
Score = 151 bits (324), Expect = 2e-036
Identities = 58/114 (50%), Positives = 74/114 (64%)
Frame = -1 / +2
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF LP T S+LQA Y I GVF+ DFP P V FD+T N+ R
Sbjct: 29 CGGPNGTRFAASMNNISFVLPKTSSILQAQYFGIKGVFSRDFPDSPAVTFDYTGNNISRG 208
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
LW PVK TR+ ++Y VQ++ Q T IFA E HP+H+HGY FY++ +GFGNY+
Sbjct: 209 LWSPVKDTRVKVLKYNTTVQVILQGTNIFAGESHPIHLHGYDFYIVGSGFGNYN 370
>gb|AW698218.1|AW698218 NXNV_070_B03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_070_B03 5', mRNA sequence
Length = 341
Score = 150 bits (323), Expect = 3e-036
Identities = 58/104 (55%), Positives = 74/104 (71%)
Frame = -1 / +3
Query: 316 ASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRL 137
ASM VSF LP T S+LQA + + GVFT DFP PPV FD+T++NV R LW PVK T++
Sbjct: 18 ASMNNVSFVLPSTSSILQAQHFGMKGVFTVDFPDKPPVQFDYTAKNVSRGLWSPVKSTKV 197
Query: 136 YRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
+ Y A VQ++ Q T IFA E HP+H+HGY FY++ GFGNY+
Sbjct: 198 KVLNYNATVQVILQGTNIFAGESHPIHLHGYDFYIVGAGFGNYN 329
>gb|CD027829.1|CD027829 NXNV_070_B03 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_070_B03 5' similar to Arabidopsis thaliana sequence
At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 341
Score = 150 bits (323), Expect = 3e-036
Identities = 58/104 (55%), Positives = 74/104 (71%)
Frame = -1 / +3
Query: 316 ASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRL 137
ASM VSF LP T S+LQA + + GVFT DFP PPV FD+T++NV R LW PVK T++
Sbjct: 18 ASMNNVSFVLPSTSSILQAQHFGMKGVFTVDFPDKPPVQFDYTAKNVSRGLWSPVKSTKV 197
Query: 136 YRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
+ Y A VQ++ Q T IFA E HP+H+HGY FY++ GFGNY+
Sbjct: 198 KVLNYNATVQVILQGTNIFAGESHPIHLHGYDFYIVGAGFGNYN 329
>gb|BX682700.1|BX682700 BX682700 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 120C07 similar to L-ASCORBATE OXIDASE, mRNA
sequence
Length = 545
Score = 150 bits (323), Expect = 3e-036
Identities = 59/114 (51%), Positives = 75/114 (65%)
Frame = -1 / +1
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM VSF LP T S+LQA + + GVFT DFP PPV FD+T++NV R
Sbjct: 157 CGGPNGSRFAASMNNVSFVLPRTSSILQAQHFGVKGVFTMDFPDNPPVQFDYTARNVSRG 336
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
LW PVK T++ + Y VQ+V Q T IFA E HP+H+HGY FY++ G+GNY+
Sbjct: 337 LWSPVKSTKVKVLNYNTTVQVVLQGTNIFAGESHPIHLHGYDFYIVGAGYGNYN 498
>gb|CX646584.1|CX646584 COLD1_10_F02.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_10_F02_A029 3', mRNA sequence
Length = 837
Score = 150 bits (323), Expect = 3e-036
Identities = 57/105 (54%), Positives = 74/105 (70%)
Frame = -1 / -2
Query: 316 ASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRL 137
ASM +SF LP T S+LQA + + GVF+ DFP P V FD+T+QN+ R LW PVKGTR+
Sbjct: 815 ASMNNISFVLPTTSSILQAQHFGMKGVFSVDFPDNPSVRFDYTAQNISRGLWSPVKGTRV 636
Query: 136 YRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
+ Y VQ++ Q T IFA E HP+H+HGY FY++ GFGNY+P
Sbjct: 635 KVLNYNTTVQVILQGTNIFAGESHPIHLHGYDFYIVGAGFGNYNP 501
>gb|DR048956.1|DR048956 RTBOR1_12_G09.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_12_G09_A029 3', mRNA sequence
Length = 628
Score = 150 bits (323), Expect = 3e-036
Identities = 58/115 (50%), Positives = 75/115 (65%)
Frame = -1 / -1
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM SF P T S+L+A + + GVF+ DFP PPV FD+T+QNV R
Sbjct: 460 CGGPNGSRFAASMNNASFVPPTTSSILEAQHFGMKGVFSGDFPDNPPVQFDYTAQNVSRG 281
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
LW PVK TR+ + Y VQ++ Q T IFA E HP+H+HGY FY++ +GFGNY+P
Sbjct: 280 LWSPVKSTRVKILNYNTTVQVILQGTNIFAGESHPIHLHGYDFYIVGSGFGNYNP 116
>gb|CF398272.1|CF398272 RTDS3_24_F12.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_24_F12_A022 5', mRNA sequence
Length = 633
Score = 149 bits (321), Expect = 5e-036
Identities = 59/114 (51%), Positives = 74/114 (64%)
Frame = -1 / +3
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF LP + S+LQA GVFT DFP PPV FD+T+QN+ RA
Sbjct: 84 CGGPNGSRFAASMNNISFVLPTSFSILQAQQLGKKGVFTTDFPDNPPVQFDYTAQNISRA 263
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
LW PVK TR+ + Y VQ++ Q T IFA E HP+H+HGY FY++ GFGNY+
Sbjct: 264 LWSPVKDTRVKVLMYNTTVQVILQGTNIFAGESHPIHLHGYDFYIVGAGFGNYN 425
>gb|CF473790.1|CF473790 RTWW2_4_G02.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_4_G02_A021 5', mRNA sequence
Length = 659
Score = 148 bits (318), Expect = 1e-035
Identities = 58/114 (50%), Positives = 76/114 (66%)
Frame = -1 / +2
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM VSF LP T S+L+A + + GVF+ DFP P V FD+T+Q+V R
Sbjct: 89 CGGPNGSRFAASMNNVSFVLPTTSSILEAQHFGMKGVFSGDFPDNPLVQFDYTAQSVSRG 268
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
LW PVKGTR+ + Y VQ++ Q T IFA E HP+H+HGY FY++ +GFGNY+
Sbjct: 269 LWSPVKGTRVKVLNYNTTVQVILQGTNIFAGESHPIHLHGYDFYIVGSGFGNYN 430
>gb|BM133931.1|BM133931 NXLV_014_C06_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_014_C06 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 535
Score = 148 bits (317), Expect = 2e-035
Identities = 57/115 (49%), Positives = 76/115 (66%)
Frame = -1 / +1
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G AS+ VSF LP T S+LQA + + GVF+ DFP P V FD+T+QN+ R
Sbjct: 100 CGGPNGSRFAASINNVSFVLPTTSSILQAQHFGMKGVFSADFPDNPSVGFDYTAQNISRG 279
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
LW PVK TR+ ++Y + VQ++ Q T IFA E HP+H+HGY FY++ FGNY+P
Sbjct: 280 LWXPVKATRVKVLKYNSTVQVILQGTNIFAGESHPIHLHGYDFYIVGAXFGNYNP 444
>gb|DR099105.1|DR099105 STRR1_53_D12.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_53_D12_A033 3', mRNA sequence
Length = 793
Score = 148 bits (317), Expect = 2e-035
Identities = 56/104 (53%), Positives = 72/104 (69%)
Frame = -1 / +2
Query: 316 ASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRL 137
ASM +SF LP T S+LQA Y I GVF+ DFP P V FD+T N+ R LW PVK TR+
Sbjct: 5 ASMNNISFVLPTTSSILQAQYFGIKGVFSRDFPDSPAVTFDYTGNNISRGLWSPVKDTRV 184
Query: 136 YRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
++Y VQ++ Q T IFA E HP+H+HGY FY++ +GFGNY+
Sbjct: 185 KVLKYNTTVQVILQGTNIFAGESHPIHLHGYDFYIVGSGFGNYN 316
>gb|BQ698187.1|BQ698187 NXPV_067_E05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_067_E05 5' similar to Arabidopsis
thaliana sequence At5g05390 laccase (diphenol oxidase)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 542
Score = 147 bits (315), Expect = 4e-035
Identities = 56/114 (49%), Positives = 75/114 (65%)
Frame = -1 / +2
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF LP S+LQA + + GVF+ DFP P V FD+T+QN+ R
Sbjct: 80 CGGPNGSRFAASMNNISFVLPTISSILQAQHFGMKGVFSADFPDNPSVGFDYTAQNISRG 259
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
LW PVK TR+ ++Y + VQ++ Q T IFA E HP+H+HGY FY++ GFGNY+
Sbjct: 260 LWSPVKATRVKVLKYNSTVQVILQGTNIFAGESHPIHLHGYDFYIVGAGFGNYN 421
>gb|BX250000.1|BX250000 BX250000 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP031C02 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 721
Score = 146 bits (314), Expect = 5e-035
Identities = 56/114 (49%), Positives = 75/114 (65%)
Frame = -1 / +2
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF P T S+LQA + + GVF+ DFP P V FD+T+QN+ R
Sbjct: 50 CGGPNGSRFAASMNNISFVPPTTSSILQAQHFGMKGVFSADFPDNPSVGFDYTAQNISRG 229
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
LW PVK TR+ ++Y + VQ++ Q T IFA E HP+H+HGY FY++ GFGNY+
Sbjct: 230 LWSPVKATRVKVLKYNSTVQVILQGTNIFAGESHPIHLHGYDFYIVGAGFGNYN 391
>gb|BG040338.1|BG040338 NXSI_107_B08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_107_B08 5' similar to Arabidopsis thaliana
sequence At2g30210 putative laccase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 528
Score = 146 bits (314), Expect = 5e-035
Identities = 58/114 (50%), Positives = 74/114 (64%)
Frame = -1 / +1
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM VSF LP T S+LQA + + GVFT DFP PPV FD+T++NV R
Sbjct: 172 CGGPNGSRFAASMNNVSFVLPSTSSILQAQHFGMKGVFTLDFPDKPPVQFDYTAKNVRRG 351
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
LW PVK T++ + Y A VQ++ Q T IFA E HP+H+HGY FY++ G NY+
Sbjct: 352 LWSPVKSTKVKVLNYNATVQVILQGTNIFAGESHPIHLHGYDFYIVGAGXXNYN 513
>dbj|BD224536.1| Materials and methods for the modification of plant lignin content
Length = 1352
Score = 145 bits (312), Expect = 9e-035
Identities = 56/114 (49%), Positives = 75/114 (65%)
Frame = -1 / +3
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF P T S+LQA + + GVF+ DFP P V FD+T+QN+ R
Sbjct: 681 CGGPNGSRFAASMNNISFVPPTTSSILQAQHFGMKGVFSADFPDNPSVGFDYTAQNISRD 860
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
LW PVK TR+ ++Y + VQ++ Q T IFA E HP+H+HGY FY++ GFGNY+
Sbjct: 861 LWSPVKATRVKVLKYNSTVQVILQGTNIFAGESHPIHLHGYDFYIVGAGFGNYN 1022
>gb|BF516615.1|BF516615 NXSI_001_A05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_001_A05 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 458
Score = 145 bits (311), Expect = 1e-034
Identities = 56/114 (49%), Positives = 75/114 (65%)
Frame = -1 / +1
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF P T S+LQA + + GVF+ DFP P V FD+T+QN+ R
Sbjct: 4 CGGPNGSRFAASMNNISFVPPTTSSILQAQHFGMKGVFSADFPDNPSVGFDYTAQNISRD 183
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
LW PVK TR+ ++Y + VQ++ Q T IFA E HP+H+HGY FY++ GFGNY+
Sbjct: 184 LWSPVKATRVKVLKYNSTVQLILQGTNIFAGESHPIHLHGYDFYIVGAGFGNYN 345
>gb|BQ700010.1|BQ700010 NXRV133_A09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV133_A09 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 765
Score = 145 bits (311), Expect = 1e-034
Identities = 56/114 (49%), Positives = 75/114 (65%)
Frame = -1 / +2
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF P T S+LQA + + GVF+ DFP P V FD+T+QN+ R
Sbjct: 20 CGGPNGSRFAASMNNISFVPPTTSSILQAQHFGMKGVFSADFPDNPSVGFDYTAQNISRD 199
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
LW PVK TR+ ++Y + VQ++ Q T IFA E HP+H+HGY FY++ GFGNY+
Sbjct: 200 LWSPVKATRVKVLKYNSTVQLILQGTNIFAGESHPIHLHGYDFYIVGAGFGNYN 361
>gb|DR178837.1|DR178837 RTMNUT1_14_G02.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_14_G02_A029 3', mRNA sequence
Length = 897
Score = 145 bits (311), Expect = 1e-034
Identities = 56/114 (49%), Positives = 75/114 (65%)
Frame = -1 / -3
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF P T S+LQA + + GVF+ DFP P V FD+T+QN+ R
Sbjct: 553 CGGPNGSRFAASMNNISFVPPTTSSILQAQHFGMKGVFSADFPDNPSVGFDYTAQNISRD 374
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
LW PVK TR+ ++Y + VQ++ Q T IFA E HP+H+HGY FY++ GFGNY+
Sbjct: 373 LWSPVKATRVKVLKYNSTVQLILQGTNIFAGESHPIHLHGYDFYIVGAGFGNYN 212
>gb|AF132120.1|AF132120 Pinus taeda laccase (Lac2) mRNA, complete cds
Length = 1958
Score = 145 bits (311), Expect = 1e-034
Identities = 56/114 (49%), Positives = 75/114 (65%)
Frame = -1 / +3
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF P T S+LQA + + GVF+ DFP P V FD+T+QN+ R
Sbjct: 1218 CGGPNGSRFAASMNNISFVPPTTSSILQAQHFGMKGVFSADFPDNPSVGFDYTAQNISRD 1397
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
LW PVK TR+ ++Y + VQ++ Q T IFA E HP+H+HGY FY++ GFGNY+
Sbjct: 1398 LWSPVKATRVKVLKYNSTVQLILQGTNIFAGESHPIHLHGYDFYIVGAGFGNYN 1559
>gb|BQ702500.1|BQ702500 NXSI_129_D01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_129_D01 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 488
Score = 142 bits (304), Expect = 1e-033
Identities = 54/104 (51%), Positives = 73/104 (70%)
Frame = -1 / +2
Query: 316 ASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRL 137
ASM +SF P T S+LQA + + GVF+ DFP P V FD+T+QN+ R LW PVK TR+
Sbjct: 2 ASMNNISFVPPTTSSILQAQHFGMKGVFSADFPDNPSVGFDYTAQNISRDLWSPVKATRV 181
Query: 136 YRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
++Y + VQ++ Q T IFA E HP+H+HGY FY++ GFGNY+
Sbjct: 182 KVLKYNSTVQLILQGTNIFAGESHPIHLHGYDFYIVGAGFGNYN 313
>gb|AW869960.1|AW869960 NXNV_120_D07_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_120_D07 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 593
Score = 141 bits (303), Expect = 2e-033
Identities = 55/112 (49%), Positives = 73/112 (65%)
Frame = -1 / +1
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF P T S+LQA + + GVF+ DFP P V FD+T+QN+ R
Sbjct: 124 CGGPNGSRFAASMNNISFVPPTTSSILQAQHFGMKGVFSADFPDNPSVGFDYTAQNISRD 303
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGN 11
LW PVK TR+ ++Y + VQ++ Q T IFA E HP+H+HGY FY++ GFGN
Sbjct: 304 LWSPVKATRVKVLKYNSTVQLILQGTNIFAGESHPIHLHGYDFYIVGAGFGN 459
>gb|CF474552.1|CF474552 RTWW2_9_H03.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_9_H03_A021 5', mRNA sequence
Length = 799
Score = 141 bits (302), Expect = 2e-033
Identities = 57/104 (54%), Positives = 70/104 (67%)
Frame = -1 / +1
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF LP T S+LQAHY G+FT FP PPV FD+T+QNV R+
Sbjct: 487 CGGPNGTRFTASMNNISFVLPSTFSILQAHYLGRKGIFTTGFPDNPPVQFDYTAQNVSRS 666
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFY 35
LW PVKGT++ ++Y A VQI+ QDT I AE HP+H+HGY FY
Sbjct: 667 LWSPVKGTKVKVLKYNAKVQIILQDTNIVNAENHPIHLHGYDFY 798
>gb|BQ700495.1|BQ700495 NXRV107_D09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV107_D09 5' similar to Arabidopsis thaliana
sequence At2g30210 putative laccase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 470
Score = 138 bits (297), Expect = 1e-032
Identities = 55/110 (50%), Positives = 69/110 (62%)
Frame = -1 / +2
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF LP T S+LQA + + GVF+ DFP P V FD+T+QN+ R
Sbjct: 83 CGGPNGSRFAASMNNISFVLPTTSSILQAQHFGMKGVFSVDFPDNPSVRFDYTAQNISRG 262
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGF 17
LW PVKGTR+ + Y VQ++ Q T IFA E HP+H+HGY FY GF
Sbjct: 263 LWSPVKGTRVKVLNYNTTVQVILQGTNIFAGESHPIHLHGYDFYXXGAGF 412
>gb|BQ702361.1|BQ702361 NXSI_127_G10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_127_G10 5' similar to Arabidopsis thaliana
sequence At2g30210 putative laccase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 538
Score = 133 bits (284), Expect(2) = 1e-032
Identities = 49/93 (52%), Positives = 66/93 (70%)
Frame = -1 / +2
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRLYRVRYGAVVQIV 101
+V+LLQA+Y I GVF DFP+ PP+ F++T N+P+ LW P T++ V Y + VQ+V
Sbjct: 116 SVALLQAYYFGINGVFMRDFPSKPPLRFNYTGDNIPKRLWAPELATKVRVVTYNSTVQLV 295
Query: 100 FQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
+Q T IF AE HPMH+HGY FYV+ FGNY+P
Sbjct: 296 YQSTNIFVAENHPMHLHGYDFYVVGQSFGNYNP 394
Score = 24.4 bits (47), Expect(2) = 1e-032
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1 / +2
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSL 269
CQG ASM +SF LP L
Sbjct: 53 CQGPNGTRLSASMNNMSFVLPSVALL 130
>gb|DR071593.1|DR071593 RTDK1_20_H07.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_20_H07_A029 5', mRNA sequence
Length = 621
Score = 136 bits (291), Expect = 7e-032
Identities = 52/93 (55%), Positives = 69/93 (74%)
Frame = -1 / +3
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRLYRVRYGAVVQIV 101
TV+LLQA+Y I GVFT DFP+ PPV F++T +++ +LW P T+L + YG+ VQ+V
Sbjct: 147 TVALLQAYYFSINGVFTMDFPSKPPVRFNYTGEDILESLWVPDAATKLKVLEYGSTVQLV 326
Query: 100 FQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
FQ T IF AE HPMH+HGY+FYV+ G GNY+P
Sbjct: 327 FQATNIFVAENHPMHLHGYNFYVVGQGSGNYNP 425
>gb|DR012672.1|DR012672 HEAT1_14_G05.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_14_G05_A029 3', mRNA sequence
Length = 822
Score = 135 bits (290), Expect = 1e-031
Identities = 52/93 (55%), Positives = 69/93 (74%)
Frame = -1 / +2
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRLYRVRYGAVVQIV 101
TV+LLQA+Y I GVFT DFP+ PPV F++T +++ +LW P T+L + YG+ VQ+V
Sbjct: 119 TVALLQAYYFSINGVFTLDFPSKPPVRFNYTGEDILESLWVPDAATKLKVLEYGSTVQLV 298
Query: 100 FQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
FQ T IF AE HPMH+HGY+FYV+ G GNY+P
Sbjct: 299 FQATNIFVAENHPMHLHGYNFYVVGQGSGNYNP 397
>gb|DR100078.1|DR100078 STRR1_61_B02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_61_B02_A033 5', mRNA sequence
Length = 695
Score = 128 bits (275), Expect(2) = 1e-031
Identities = 51/101 (50%), Positives = 63/101 (62%)
Frame = -1 / +2
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF LP T S+LQA Y I GVF+ DFP P V FD+T N+ R
Sbjct: 347 CGGPNGTRFAASMNNISFVLPKTSSILQAQYFGIKGVFSRDFPDSPAVTFDYTGNNISRG 526
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGY 44
LW PVK TR+ ++Y VQ++ Q T IFA E HP+H+HGY
Sbjct: 527 LWSPVKDTRVKVLKYNTTVQVILQGTNIFAGESHPIHLHGY 649
Score = 26.3 bits (51), Expect(2) = 1e-031
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = -1 / +3
Query: 43 HFYVLATGFGNYD 5
+FY++ +GFGNY+
Sbjct: 651 NFYIVGSGFGNYN 689
>gb|DR019426.1|DR019426 STRS1_30_A03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_30_A03_A034 3', mRNA sequence
Length = 835
Score = 134 bits (288), Expect = 2e-031
Identities = 54/114 (47%), Positives = 72/114 (63%)
Frame = -1 / -2
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF LP + S+LQA GVFT DFP PP+ FD+T+QN+ A
Sbjct: 486 CGGPNGSRFAASMNNISFVLPTSFSILQAQQLGKKGVFTTDFPDNPPLQFDYTAQNISTA 307
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
L PVK TR+ ++Y VQ++ Q T I A E HP+H+HG+ FY++ GFGNY+
Sbjct: 306 LSSPVKDTRVKVLKYNTTVQLILQGTNIVAGESHPIHLHGHDFYIVGAGFGNYN 145
>gb|DR102424.1|DR102424 STRR1_81_B02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_81_B02_A033 3', mRNA sequence
Length = 799
Score = 134 bits (288), Expect = 2e-031
Identities = 54/114 (47%), Positives = 72/114 (63%)
Frame = -1 / -1
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF LP + S+LQA GVFT DFP PP+ FD+T+QN+ A
Sbjct: 604 CGGPNGSRFAASMNNISFVLPTSFSILQAQQLGKKGVFTTDFPDNPPLQFDYTAQNISTA 425
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
L PVK TR+ ++Y VQ++ Q T I A E HP+H+HG+ FY++ GFGNY+
Sbjct: 424 LSSPVKDTRVKVLKYNTTVQLILQGTNIVAGESHPIHLHGHDFYIVGAGFGNYN 263
>gb|DR387570.1|DR387570 RTHG1_22_E12.g2_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_22_E12_A029 5', mRNA sequence
Length = 640
Score = 134 bits (288), Expect = 2e-031
Identities = 54/114 (47%), Positives = 72/114 (63%)
Frame = -1 / +3
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF LP + S+LQA GVFT DFP PP+ FD+T+QN+ A
Sbjct: 165 CGGPNGSRFAASMNNISFVLPTSFSILQAQQLGKKGVFTTDFPDNPPLQFDYTAQNISTA 344
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
L PVK TR+ ++Y VQ++ Q T I A E HP+H+HG+ FY++ GFGNY+
Sbjct: 345 LSSPVKDTRVKVLKYNTTVQLILQGTNIVAGESHPIHLHGHDFYIVGAGFGNYN 506
>gb|CF671437.1|CF671437 RTCNT1_57_C11.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_57_C11_A029 3', mRNA sequence
Length = 613
Score = 133 bits (285), Expect = 5e-031
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = -1 / -1
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRLYRVRYGAVVQIV 101
+V+LLQA+Y I GVF DFP+ PP+ F++T ++P+ LW P T++ V Y + VQ+V
Sbjct: 346 SVALLQAYYFGINGVFMKDFPSKPPLRFNYTGDDIPKRLWAPELATKVRVVTYNSTVQLV 167
Query: 100 FQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
+Q T IF AE HPMH+HGY FYV+ GFGNY+P
Sbjct: 166 YQTTNIFVAENHPMHLHGYDFYVVGQGFGNYNP 68
>gb|BF778997.1|BF778997 NXSI_091_H05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_091_H05 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 380
Score = 132 bits (283), Expect = 9e-031
Identities = 51/104 (49%), Positives = 70/104 (67%)
Frame = -1 / +2
Query: 316 ASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRL 137
ASM +SF P T S+LQA + + GVF+ DFP P V FD+T+QN+ R LW PVK TR+
Sbjct: 2 ASMNNISFVPPTTSSILQAQHFGMKGVFSADFPDNPSVGFDYTAQNISRDLWSPVKATRV 181
Query: 136 YRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
++Y + VQ++ Q T IFA E HP+H+HGY Y++ GNY+
Sbjct: 182 KVLKYNSTVQLILQGTNIFAGESHPIHLHGYDXYIVGAXXGNYN 313
>gb|CF473814.1|CF473814 RTWW2_19_B04.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_19_B04_A021 3', mRNA sequence
Length = 636
Score = 132 bits (283), Expect = 9e-031
Identities = 48/93 (51%), Positives = 67/93 (72%)
Frame = -1 / -2
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRLYRVRYGAVVQIV 101
+V+LLQA+Y I GVF DFP+ PP+ F++T ++P+ LW P T++ V Y + VQ+V
Sbjct: 383 SVALLQAYYFGINGVFMRDFPSKPPLRFNYTGDDIPKRLWAPELATKVRVVTYNSTVQLV 204
Query: 100 FQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
+Q T +F AE HPMH+HGY FYV+ GFGNY+P
Sbjct: 203 YQTTNVFVAENHPMHLHGYDFYVVGQGFGNYNP 105
>gb|AH013933.1|SEG_AY645907S Pinus taeda laccase-like multicopper oxidase 90 gene, exons 3 through
5 and partial cds
Length = 1131
Score = 132 bits (283), Expect = 9e-031
Identities = 52/105 (49%), Positives = 67/105 (63%)
Frame = -1 / +1
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM SF LP T S+L+A + + GVF+ DFP PPV FD+T++NV
Sbjct: 817 CGGPNGSRFAASMNNASFVLPTTSSILEAQHFGMKGVFSGDFPDNPPVQFDYTARNVSIG 996
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYV 32
LW PVKGTR+ + Y VQ++ Q T IFA E HP+H+HGY FY+
Sbjct: 997 LWSPVKGTRVKILNYNTTVQVILQGTNIFAGESHPIHLHGYDFYI 1131
>gb|AY645909.1|AY645907S3 Pinus taeda laccase-like multicopper oxidase 90 gene, exon 5 and
partial cds
Length = 812
Score = 132 bits (283), Expect = 9e-031
Identities = 52/105 (49%), Positives = 67/105 (63%)
Frame = -1 / +3
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM SF LP T S+L+A + + GVF+ DFP PPV FD+T++NV
Sbjct: 498 CGGPNGSRFAASMNNASFVLPTTSSILEAQHFGMKGVFSGDFPDNPPVQFDYTARNVSIG 677
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYV 32
LW PVKGTR+ + Y VQ++ Q T IFA E HP+H+HGY FY+
Sbjct: 678 LWSPVKGTRVKILNYNTTVQVILQGTNIFAGESHPIHLHGYDFYI 812
>gb|DR384963.1|DR384963 RTHG1_5_F06.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_5_F06_A029 5', mRNA sequence
Length = 759
Score = 132 bits (282), Expect = 1e-030
Identities = 51/93 (54%), Positives = 68/93 (73%)
Frame = -1 / -2
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRLYRVRYGAVVQIV 101
TV+LLQA+Y I GVFT D P+ PPV F++T +++ +LW P T+L + YG+ VQ+V
Sbjct: 701 TVALLQAYYFSINGVFTLDSPSKPPVRFNYTGEDILESLWVPDAATKLKVLEYGSTVQLV 522
Query: 100 FQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
FQ T IF AE HPMH+HGY+FYV+ G GNY+P
Sbjct: 521 FQATNIFVAENHPMHLHGYNFYVVGQGSGNYNP 423
>gb|BE758677.1|BE758677 NXCI_069_H10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_069_H10 5' similar to Arabidopsis
thaliana sequence At5g05390 laccase (diphenol oxidase)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 394
Score = 131 bits (281), Expect = 2e-030
Identities = 53/104 (50%), Positives = 71/104 (68%)
Frame = -1 / +1
Query: 316 ASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRL 137
ASM SF P T S+LQA + + GVF+ DFP P V FD+T+QN+ R LW PVK TR+
Sbjct: 22 ASMXXXSFVPPTTSSILQAQHFGMKGVFSADFPDNPSVGFDYTAQNISRDLWSPVKATRV 201
Query: 136 YRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
++Y + Q++ Q T IFA E HP+H+H Y FY++ FGNY+
Sbjct: 202 KVLKYNSTXQLILQGTNIFAGESHPIHLHXYDFYIVGAXFGNYN 333
>gb|BM492879.1|BM492879 NXRV_033_D05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_033_D05 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 384
Score = 130 bits (278), Expect = 4e-030
Identities = 51/104 (49%), Positives = 69/104 (66%)
Frame = -1 / +3
Query: 316 ASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRL 137
ASM +SF P T S+LQA + + GVF+ DFP P V FD+T+QN+ R LW PVK TR+
Sbjct: 12 ASMNNISFVPPTTSSILQAQHFGMKGVFSADFPDNPSVGFDYTAQNISRDLWSPVKATRV 191
Query: 136 YRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
++Y + VQ+ T IFA E P+H+HGY FY++ G GNY+
Sbjct: 192 KVLKYNSTVQLXLXXTNIFAGESXPIHLHGYDFYIVGAGXGNYN 323
>gb|AW985001.1|AW985001 NXNV_118_H12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_118_H12 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 434
Score = 128 bits (275), Expect = 1e-029
Identities = 51/114 (44%), Positives = 70/114 (61%)
Frame = -1 / +1
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF P T S+LQA + + GVF+ DFP P V FD+T+QN+ R
Sbjct: 4 CGGPNGSRFAASMNNISFVPPTTSSILQAQHFGMKGVFSADFPDNPSVGFDYTAQNISRD 183
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
LW PVK TR+ ++Y + VQ++ Q T IFA E HP+H+H Y++ GNY+
Sbjct: 184 LWSPVKATRVKVLKYNSTVQLILQGTNIFAGESHPIHLHXXDXYIVGAXXGNYN 345
>gb|DR384889.1|DR384889 RTHG1_5_F06.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_5_F06_A029 3', mRNA sequence
Length = 734
Score = 128 bits (275), Expect = 1e-029
Identities = 50/90 (55%), Positives = 66/90 (73%)
Frame = -1 / -3
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRLYRVRYGAVVQIV 101
TV+LLQA+Y I GVFT DFP+ PPV F++T +++ +LW P T+L + YG+ VQ+V
Sbjct: 270 TVALLQAYYFSINGVFTLDFPSKPPVRFNYTGEDILESLWVPDAATKLKVLEYGSTVQLV 91
Query: 100 FQDTGIFAAEEHPMHIHGYHFYVLATGFGN 11
FQ T IF AE HPMH+HGY+FYV+ G GN
Sbjct: 90 FQATNIFVAENHPMHLHGYNFYVVGQGSGN 1
>gb|DR014270.1|DR014270 HEAT1_24_A10.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_24_A10_A029 5', mRNA sequence
Length = 824
Score = 126 bits (269), Expect = 8e-029
Identities = 48/115 (41%), Positives = 68/115 (59%)
Frame = -1 / +3
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C+G ASM +S+ P L +Y+ V+T DFP+ P V F++T ++P+
Sbjct: 39 CEGPNGTRLSASMNNISYVEPTISLLQAYYYNKSTDVYTTDFPSKPEVRFNYTGDDIPQK 218
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
W P T++ + Y + VQ+VFQ T IF E HPMH+HGY+FYV+ G GNYDP
Sbjct: 219 FWTPDPATKVKLLEYNSTVQLVFQATNIFVVENHPMHLHGYNFYVVGQGSGNYDP 383
>gb|DR099176.1|DR099176 STRR1_53_D12.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_53_D12_A033 5', mRNA sequence
Length = 583
Score = 98.7 bits (209), Expect(2) = 1e-027
Identities = 41/86 (47%), Positives = 51/86 (59%)
Frame = -1 / +2
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G ASM +SF LP T S+LQA Y I GVF+ DFP P V FD+T N+ R
Sbjct: 269 CGGPNGTRFAASMNNISFVLPTTSSILQAQYFGIKGVFSRDFPDSPAVTFDYTGNNISRG 448
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDT 89
LW PVK TR+ ++Y VQ++ Q T
Sbjct: 449 LWSPVKDTRVKVLKYNTTVQVILQGT 526
Score = 42.3 bits (86), Expect(2) = 1e-027
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -1 / +3
Query: 100 FQDTGIFAAEEHPMHIHGYHFY 35
F++ IFA E HP+H+HGY FY
Sbjct: 516 FKEQNIFAGESHPIHLHGYDFY 581
>gb|BX784061.1|BX784061 BX784061 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 128C11 similar to L-ASCORBATE OXIDASE, mRNA
sequence
Length = 628
Score = 117 bits (250), Expect = 3e-026
Identities = 48/109 (44%), Positives = 65/109 (59%)
Frame = -1 / +1
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRA 167
C G SM +S P T S+LQA Y + GVF+ DFP P V FD+T+ N+ R
Sbjct: 184 CGGPNGSRFAVSMNNISLVPPTTSSILQAQYFGMKGVFSADFPDNPSVGFDYTA*NISRG 363
Query: 166 LWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATG 20
LW PVK TR+ ++Y + VQ++ Q T IFA E P+H+HGY+ +L G
Sbjct: 364 LWSPVKATRVKVLKYNSTVQVILQGTNIFAGESRPIHLHGYNL*LLLRG 510
>gb|CO197243.1|CO197243 GEO1_4_H02.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_4_H02_A029 5', mRNA sequence
Length = 707
Score = 110 bits (235), Expect(2) = 1e-025
Identities = 41/79 (51%), Positives = 56/79 (70%)
Frame = -1 / +2
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRLYRVRYGAVVQIV 101
+V+LLQA+Y I GVF DFP+ PP+ F++T N+P+ LW P T++ V Y + VQ+V
Sbjct: 470 SVALLQAYYFGINGVFMRDFPSKPPLRFNYTGDNIPKRLWAPELATKVRVVTYNSTVQLV 649
Query: 100 FQDTGIFAAEEHPMHIHGY 44
+Q T IF AE HPMH+HGY
Sbjct: 650 YQSTNIFVAENHPMHLHGY 706
Score = 24.4 bits (47), Expect(2) = 1e-025
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1 / +2
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSL 269
CQG ASM +SF LP L
Sbjct: 407 CQGPNGTRLSASMNNMSFVLPSVALL 484
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 133,870,834
Number of Sequences: 355925
Number of extensions: 1711653
Number of successful extensions: 88488
Number of sequences better than 1.0e-020: 95
length of database: 72,425,745
effective HSP length: 49
effective length of database: 54,985,420
effective search space used: 3684023140
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)