TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD4g02.sg.2.1
(308 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT633427.1|DT633427 EST1148358 Normalized pine embryo li... 226 3e-059
gb|DR686277.1|DR686277 EST1076355 Normalized pine embryo li... 226 3e-059
gb|DN460210.1|DN460210 EST956009 Sequencing ESTs from loblo... 207 2e-053
gb|CF399316.1|CF399316 RTDS3_27_G09.g1_A022 Drought-stresse... 204 2e-052
gb|CF670014.1|CF670014 RTCNT1_47_C05.g1_A029 Root control P... 204 2e-052
gb|CF670024.1|CF670024 RTCNT1_47_D05.g1_A029 Root control P... 204 2e-052
gb|BX678886.1|BX678886 BX678886 RS Pinus pinaster cDNA clon... 204 2e-052
gb|CO168955.1|CO168955 NDL1_3_E08.g1_A029 Needles control P... 204 2e-052
gb|CV135596.1|CV135596 EST846805 Sequencing ESTs from loblo... 204 2e-052
gb|CV136624.1|CV136624 EST847833 Sequencing ESTs from loblo... 204 2e-052
gb|DN457731.1|DN457731 EST953530 Sequencing ESTs from loblo... 204 2e-052
gb|DR094115.1|DR094115 STRR1_12_C04.g1_A033 Stem Response R... 204 2e-052
gb|DR691522.1|DR691522 EST1081609 Normalized pine embryo li... 204 2e-052
gb|DR744924.1|DR744924 RTCU1_25_G06.g1_A029 Roots plus adde... 204 2e-052
gb|DT626805.1|DT626805 EST1159881 Sequencing ESTs from lobl... 204 2e-052
gb|DR688563.1|DR688563 EST1078648 Normalized pine embryo li... 166 9e-045
gb|DR056997.1|DR056997 RTNIT1_1_H08.g1_A029 Roots minus nit... 177 2e-044
dbj|BD236521.1| Materials and method for modification of pl... 164 2e-040
gb|DR177347.1|DR177347 RTMNUT1_4_F09.g1_A029 Roots minus mi... 160 3e-039
gb|BG275620.1|BG275620 NXSI_144_A03_F NXSI (Nsf Xylem Side ... 154 2e-037
gb|DT626458.1|DT626458 EST1158382 Sequencing ESTs from lobl... 154 2e-037
gb|BX255434.1|BX255434 BX255434 Pinus pinaster differenciat... 151 2e-036
gb|AI812993.1|AI812993 2E11 Pine Lambda Zap Xylem library P... 147 2e-035
gb|CX648556.1|CX648556 COLD1_29_A03.g1_A029 Root cold Pinus... 141 2e-033
gb|DR178249.1|DR178249 RTMNUT1_10_G12.b1_A029 Roots minus m... 140 3e-033
gb|CV034239.1|CV034239 RTNACL1_39_C12.g1_A029 Roots plus ad... 114 2e-025
>gb|DT633427.1|DT633427 EST1148358 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFU78 3' end, mRNA sequence
Length = 808
Score = 226 bits (489), Expect = 3e-059
Identities = 85/102 (83%), Positives = 94/102 (92%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PCTE+FP+CA NPYGRTKL IE+ICRDVHR+DPDWKIILLRYFNPVGAHPSG+IGEDP G
Sbjct: 452 PCTEDFPICAMNPYGRTKLFIEEICRDVHRADPDWKIILLRYFNPVGAHPSGFIGEDPRG 631
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMP+VQQVAV R P LTV+G DY TKDGTGVRDYIHV+
Sbjct: 632 IPNNLMPFVQQVAVERRPELTVFGNDYQTKDGTGVRDYIHVM 757
Score = 128 bits (275), Expect = 9e-030
Identities = 56/78 (71%), Positives = 62/78 (79%)
Frame = +3 / -2
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G L TATC T G+RLFG P+GSSP+ PLG*APTGLKYLS +IFQSGS RWTSR +SSI S
Sbjct: 684 GLLSTATC*TNGMRLFGIPRGSSPINPLG*APTGLKYLSKIIFQSGSARWTSRHISSIKS 505
Query: 255 FVRP*GLVAQSGNSSVHG 308
VRP G +A G SSVHG
Sbjct: 504 LVRPYGFIAHIGKSSVHG 451
>gb|DR686277.1|DR686277 EST1076355 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABE31 3' end, mRNA sequence
Length = 547
Score = 226 bits (489), Expect = 3e-059
Identities = 85/102 (83%), Positives = 94/102 (92%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PCTE+FP+CA NPYGRTKL IE+ICRDVHR+DPDWKIILLRYFNPVGAHPSG+IGEDP G
Sbjct: 140 PCTEDFPICAMNPYGRTKLFIEEICRDVHRADPDWKIILLRYFNPVGAHPSGFIGEDPRG 319
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMP+VQQVAV R P LTV+G DY TKDGTGVRDYIHV+
Sbjct: 320 IPNNLMPFVQQVAVERRPELTVFGNDYQTKDGTGVRDYIHVM 445
Score = 128 bits (275), Expect = 9e-030
Identities = 56/78 (71%), Positives = 62/78 (79%)
Frame = +3 / -2
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G L TATC T G+RLFG P+GSSP+ PLG*APTGLKYLS +IFQSGS RWTSR +SSI S
Sbjct: 372 GLLSTATC*TNGMRLFGIPRGSSPINPLG*APTGLKYLSKIIFQSGSARWTSRHISSIKS 193
Query: 255 FVRP*GLVAQSGNSSVHG 308
VRP G +A G SSVHG
Sbjct: 192 LVRPYGFIAHIGKSSVHG 139
>gb|DN460210.1|DN460210 EST956009 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHV83 5' end, mRNA sequence
Length = 880
Score = 207 bits (446), Expect = 2e-053
Identities = 78/102 (76%), Positives = 88/102 (86%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD+H++DPDW+IILLRYFNPVGAHPSG IGEDP G
Sbjct: 497 PCVEDFQLSAMNPYGRTKLFLEEIARDIHKADPDWRIILLRYFNPVGAHPSGQIGEDPKG 676
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMP++QQVAVGR P L VYG DY TKDGT VRDYIHVV
Sbjct: 677 IPNNLMPFIQQVAVGRQPVLNVYGNDYQTKDGTAVRDYIHVV 802
Score = 105 bits (223), Expect = 1e-022
Identities = 49/78 (62%), Positives = 56/78 (71%)
Frame = +3 / -2
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G LPTATC G+RLFG P GSSP++PLG*APTGLKYLS +I QSGS SR +SS S
Sbjct: 729 GCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISRAISSRKS 550
Query: 255 FVRP*GLVAQSGNSSVHG 308
VRP G +A+S SS G
Sbjct: 549 LVRPYGFIAES*KSSTQG 496
>gb|CF399316.1|CF399316 RTDS3_27_G09.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_27_G09_A022 5', mRNA sequence
Length = 781
Score = 204 bits (440), Expect = 2e-052
Identities = 77/102 (75%), Positives = 88/102 (86%)
Frame = -2 / +3
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD++++DPDW+IILLRYFNPVGAHPSG IGEDP G
Sbjct: 426 PCVEDFQLSAMNPYGRTKLFLEEIARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKG 605
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMP++QQVAVGR P L VYG DY TKDGT VRDYIHVV
Sbjct: 606 IPNNLMPFIQQVAVGRQPVLNVYGNDYQTKDGTAVRDYIHVV 731
Score = 105 bits (223), Expect = 1e-022
Identities = 49/78 (62%), Positives = 56/78 (71%)
Frame = +3 / -1
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G LPTATC G+RLFG P GSSP++PLG*APTGLKYLS +I QSGS SR +SS S
Sbjct: 658 GCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISRAISSRKS 479
Query: 255 FVRP*GLVAQSGNSSVHG 308
VRP G +A+S SS G
Sbjct: 478 LVRPYGFIAES*KSSTQG 425
>gb|CF670014.1|CF670014 RTCNT1_47_C05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_C05_A029 5', mRNA sequence
Length = 801
Score = 204 bits (440), Expect = 2e-052
Identities = 77/102 (75%), Positives = 88/102 (86%)
Frame = -2 / +3
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD++++DPDW+IILLRYFNPVGAHPSG IGEDP G
Sbjct: 453 PCVEDFQLSAMNPYGRTKLFLEEIARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKG 632
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMP++QQVAVGR P L VYG DY TKDGT VRDYIHVV
Sbjct: 633 IPNNLMPFIQQVAVGRQPVLNVYGNDYQTKDGTAVRDYIHVV 758
Score = 105 bits (223), Expect = 1e-022
Identities = 49/78 (62%), Positives = 56/78 (71%)
Frame = +3 / -3
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G LPTATC G+RLFG P GSSP++PLG*APTGLKYLS +I QSGS SR +SS S
Sbjct: 685 GCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISRAISSRKS 506
Query: 255 FVRP*GLVAQSGNSSVHG 308
VRP G +A+S SS G
Sbjct: 505 LVRPYGFIAES*KSSTQG 452
>gb|CF670024.1|CF670024 RTCNT1_47_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_D05_A029 5', mRNA sequence
Length = 800
Score = 204 bits (440), Expect = 2e-052
Identities = 77/102 (75%), Positives = 88/102 (86%)
Frame = -2 / +1
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD++++DPDW+IILLRYFNPVGAHPSG IGEDP G
Sbjct: 451 PCVEDFQLSAMNPYGRTKLFLEEIARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKG 630
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMP++QQVAVGR P L VYG DY TKDGT VRDYIHVV
Sbjct: 631 IPNNLMPFIQQVAVGRQPVLNVYGNDYQTKDGTAVRDYIHVV 756
Score = 105 bits (223), Expect = 1e-022
Identities = 49/78 (62%), Positives = 56/78 (71%)
Frame = +3 / -1
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G LPTATC G+RLFG P GSSP++PLG*APTGLKYLS +I QSGS SR +SS S
Sbjct: 683 GCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISRAISSRKS 504
Query: 255 FVRP*GLVAQSGNSSVHG 308
VRP G +A+S SS G
Sbjct: 503 LVRPYGFIAES*KSSTQG 450
>gb|BX678886.1|BX678886 BX678886 RS Pinus pinaster cDNA clone RS16E09, mRNA sequence
Length = 661
Score = 204 bits (440), Expect = 2e-052
Identities = 77/102 (75%), Positives = 88/102 (86%)
Frame = -2 / +3
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD++++DPDW+IILLRYFNPVGAHPSG IGEDP G
Sbjct: 69 PCVEDFQLSAMNPYGRTKLFLEEIARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKG 248
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMP++QQVAVGR P L VYG DY TKDGT VRDYIHVV
Sbjct: 249 IPNNLMPFIQQVAVGRQPVLNVYGNDYQTKDGTAVRDYIHVV 374
Score = 105 bits (223), Expect = 1e-022
Identities = 49/78 (62%), Positives = 56/78 (71%)
Frame = +3 / -1
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G LPTATC G+RLFG P GSSP++PLG*APTGLKYLS +I QSGS SR +SS S
Sbjct: 301 GCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISRAISSRKS 122
Query: 255 FVRP*GLVAQSGNSSVHG 308
VRP G +A+S SS G
Sbjct: 121 LVRPYGFIAES*KSSTQG 68
>gb|CO168955.1|CO168955 NDL1_3_E08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_3_E08_A029 5', mRNA sequence
Length = 810
Score = 204 bits (440), Expect = 2e-052
Identities = 77/102 (75%), Positives = 88/102 (86%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD++++DPDW+IILLRYFNPVGAHPSG IGEDP G
Sbjct: 458 PCVEDFQLSAMNPYGRTKLFLEEIARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKG 637
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMP++QQVAVGR P L VYG DY TKDGT VRDYIHVV
Sbjct: 638 IPNNLMPFIQQVAVGRQPVLNVYGNDYQTKDGTAVRDYIHVV 763
Score = 105 bits (223), Expect = 1e-022
Identities = 49/78 (62%), Positives = 56/78 (71%)
Frame = +3 / -1
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G LPTATC G+RLFG P GSSP++PLG*APTGLKYLS +I QSGS SR +SS S
Sbjct: 690 GCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISRAISSRKS 511
Query: 255 FVRP*GLVAQSGNSSVHG 308
VRP G +A+S SS G
Sbjct: 510 LVRPYGFIAES*KSSTQG 457
>gb|CV135596.1|CV135596 EST846805 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICME12 5' end, mRNA sequence
Length = 852
Score = 204 bits (440), Expect = 2e-052
Identities = 77/102 (75%), Positives = 88/102 (86%)
Frame = -2 / +3
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD++++DPDW+IILLRYFNPVGAHPSG IGEDP G
Sbjct: 495 PCVEDFQLSAMNPYGRTKLFLEEIARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKG 674
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMP++QQVAVGR P L VYG DY TKDGT VRDYIHVV
Sbjct: 675 IPNNLMPFIQQVAVGRQPVLNVYGNDYQTKDGTAVRDYIHVV 800
Score = 105 bits (223), Expect = 1e-022
Identities = 49/78 (62%), Positives = 56/78 (71%)
Frame = +3 / -3
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G LPTATC G+RLFG P GSSP++PLG*APTGLKYLS +I QSGS SR +SS S
Sbjct: 727 GCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISRAISSRKS 548
Query: 255 FVRP*GLVAQSGNSSVHG 308
VRP G +A+S SS G
Sbjct: 547 LVRPYGFIAES*KSSTQG 494
>gb|CV136624.1|CV136624 EST847833 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAE04 5' end, mRNA sequence
Length = 906
Score = 204 bits (440), Expect = 2e-052
Identities = 77/102 (75%), Positives = 88/102 (86%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD++++DPDW+IILLRYFNPVGAHPSG IGEDP G
Sbjct: 497 PCVEDFQLSAMNPYGRTKLFLEEIARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKG 676
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMP++QQVAVGR P L VYG DY TKDGT VRDYIHVV
Sbjct: 677 IPNNLMPFIQQVAVGRQPVLNVYGNDYQTKDGTAVRDYIHVV 802
Score = 105 bits (223), Expect = 1e-022
Identities = 49/78 (62%), Positives = 56/78 (71%)
Frame = +3 / -1
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G LPTATC G+RLFG P GSSP++PLG*APTGLKYLS +I QSGS SR +SS S
Sbjct: 729 GCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISRAISSRKS 550
Query: 255 FVRP*GLVAQSGNSSVHG 308
VRP G +A+S SS G
Sbjct: 549 LVRPYGFIAES*KSSTQG 496
>gb|DN457731.1|DN457731 EST953530 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIH331 5' end, mRNA sequence
Length = 925
Score = 204 bits (440), Expect = 2e-052
Identities = 77/102 (75%), Positives = 88/102 (86%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD++++DPDW+IILLRYFNPVGAHPSG IGEDP G
Sbjct: 497 PCVEDFQLSAMNPYGRTKLFLEEIARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKG 676
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMP++QQVAVGR P L VYG DY TKDGT VRDYIHVV
Sbjct: 677 IPNNLMPFIQQVAVGRQPVLNVYGNDYQTKDGTAVRDYIHVV 802
Score = 105 bits (223), Expect = 1e-022
Identities = 49/78 (62%), Positives = 56/78 (71%)
Frame = +3 / -2
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G LPTATC G+RLFG P GSSP++PLG*APTGLKYLS +I QSGS SR +SS S
Sbjct: 729 GCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISRAISSRKS 550
Query: 255 FVRP*GLVAQSGNSSVHG 308
VRP G +A+S SS G
Sbjct: 549 LVRPYGFIAES*KSSTQG 496
>gb|DR094115.1|DR094115 STRR1_12_C04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_C04_A033 5', mRNA sequence
Length = 847
Score = 204 bits (440), Expect = 2e-052
Identities = 77/102 (75%), Positives = 88/102 (86%)
Frame = -2 / +3
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD++++DPDW+IILLRYFNPVGAHPSG IGEDP G
Sbjct: 78 PCVEDFQLSAMNPYGRTKLFLEEIARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKG 257
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMP++QQVAVGR P L VYG DY TKDGT VRDYIHVV
Sbjct: 258 IPNNLMPFIQQVAVGRQPVLNVYGNDYQTKDGTAVRDYIHVV 383
Score = 105 bits (223), Expect = 1e-022
Identities = 49/78 (62%), Positives = 56/78 (71%)
Frame = +3 / -1
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G LPTATC G+RLFG P GSSP++PLG*APTGLKYLS +I QSGS SR +SS S
Sbjct: 310 GCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISRAISSRKS 131
Query: 255 FVRP*GLVAQSGNSSVHG 308
VRP G +A+S SS G
Sbjct: 130 LVRPYGFIAES*KSSTQG 77
>gb|DR691522.1|DR691522 EST1081609 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD946 3' end, mRNA sequence
Length = 847
Score = 204 bits (440), Expect = 2e-052
Identities = 77/102 (75%), Positives = 88/102 (86%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD++++DPDW+IILLRYFNPVGAHPSG IGEDP G
Sbjct: 488 PCVEDFQLSAMNPYGRTKLFLEEIARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKG 667
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMP++QQVAVGR P L VYG DY TKDGT VRDYIHVV
Sbjct: 668 IPNNLMPFIQQVAVGRQPVLNVYGNDYQTKDGTAVRDYIHVV 793
Score = 105 bits (223), Expect = 1e-022
Identities = 49/78 (62%), Positives = 56/78 (71%)
Frame = +3 / -2
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G LPTATC G+RLFG P GSSP++PLG*APTGLKYLS +I QSGS SR +SS S
Sbjct: 720 GCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISRAISSRKS 541
Query: 255 FVRP*GLVAQSGNSSVHG 308
VRP G +A+S SS G
Sbjct: 540 LVRPYGFIAES*KSSTQG 487
>gb|DR744924.1|DR744924 RTCU1_25_G06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_G06_A029 5', mRNA sequence
Length = 691
Score = 204 bits (440), Expect = 2e-052
Identities = 77/102 (75%), Positives = 88/102 (86%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD++++DPDW+IILLRYFNPVGAHPSG IGEDP G
Sbjct: 164 PCVEDFQLSAMNPYGRTKLFLEEIARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKG 343
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMP++QQVAVGR P L VYG DY TKDGT VRDYIHVV
Sbjct: 344 IPNNLMPFIQQVAVGRQPVLNVYGNDYQTKDGTAVRDYIHVV 469
Score = 105 bits (223), Expect = 1e-022
Identities = 49/78 (62%), Positives = 56/78 (71%)
Frame = +3 / -2
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G LPTATC G+RLFG P GSSP++PLG*APTGLKYLS +I QSGS SR +SS S
Sbjct: 396 GCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISRAISSRKS 217
Query: 255 FVRP*GLVAQSGNSSVHG 308
VRP G +A+S SS G
Sbjct: 216 LVRPYGFIAES*KSSTQG 163
>gb|DT626805.1|DT626805 EST1159881 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAR51 5' end, mRNA sequence
Length = 942
Score = 204 bits (440), Expect = 2e-052
Identities = 77/102 (75%), Positives = 88/102 (86%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD++++DPDW+IILLRYFNPVGAHPSG IGEDP G
Sbjct: 497 PCVEDFQLSAMNPYGRTKLFLEEIARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKG 676
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMP++QQVAVGR P L VYG DY TKDGT VRDYIHVV
Sbjct: 677 IPNNLMPFIQQVAVGRQPVLNVYGNDYQTKDGTAVRDYIHVV 802
Score = 105 bits (223), Expect = 1e-022
Identities = 49/78 (62%), Positives = 56/78 (71%)
Frame = +3 / -1
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G LPTATC G+RLFG P GSSP++PLG*APTGLKYLS +I QSGS SR +SS S
Sbjct: 729 GCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISRAISSRKS 550
Query: 255 FVRP*GLVAQSGNSSVHG 308
VRP G +A+S SS G
Sbjct: 549 LVRPYGFIAES*KSSTQG 496
>gb|DR688563.1|DR688563 EST1078648 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC779 3' end, mRNA sequence
Length = 943
Score = 166 bits (358), Expect(3) = 9e-045
Identities = 62/84 (73%), Positives = 73/84 (86%)
Frame = -2 / +1
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD++++DPDW+IILLRYFNPVGAHPSG IGEDP G
Sbjct: 511 PCVEDFQLSAMNPYGRTKLFLEEIARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKG 690
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYG 56
+PNNLMP++QQVAVGR P L VYG
Sbjct: 691 IPNNLMPFIQQVAVGRQPVLNVYG 762
Score = 105 bits (223), Expect = 1e-022
Identities = 49/78 (62%), Positives = 56/78 (71%)
Frame = +3 / -3
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G LPTATC G+RLFG P GSSP++PLG*APTGLKYLS +I QSGS SR +SS S
Sbjct: 743 GCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISRAISSRKS 564
Query: 255 FVRP*GLVAQSGNSSVHG 308
VRP G +A+S SS G
Sbjct: 563 LVRPYGFIAES*KSSTQG 510
Score = 27.2 bits (53), Expect(3) = 9e-045
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -2 / +3
Query: 34 GTGVRDYIHVV 2
GT VRDYIHVV
Sbjct: 786 GTAVRDYIHVV 818
Score = 23.1 bits (44), Expect(3) = 9e-045
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2 / +2
Query: 67 TVYGTDYSTKDG 32
T G DY TKDG
Sbjct: 752 TYMGNDYQTKDG 787
>gb|DR056997.1|DR056997 RTNIT1_1_H08.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_1_H08_A029 5', mRNA sequence
Length = 660
Score = 177 bits (381), Expect = 2e-044
Identities = 65/76 (85%), Positives = 73/76 (96%)
Frame = -2 / +1
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PCTE+FP+CA NPYGRTKL IE+ICRDVHR+DP+WKIILLRYFNPVGAHPSG+IGEDP G
Sbjct: 433 PCTEDFPICAMNPYGRTKLFIEEICRDVHRADPEWKIILLRYFNPVGAHPSGFIGEDPRG 612
Query: 127 VPNNLMPYVQQVAVGR 80
+PNNLMP+VQQVAVGR
Sbjct: 613 IPNNLMPFVQQVAVGR 660
Score = 128 bits (275), Expect = 9e-030
Identities = 55/76 (72%), Positives = 61/76 (80%)
Frame = +3 / -2
Query: 81 LPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITSFV 260
LPTATC T G+RLFG P+GSSP+ PLG*APTGLKYLS +IF SGS RWTSR +SSI S V
Sbjct: 659 LPTATC*TNGMRLFGIPRGSSPINPLG*APTGLKYLSKIIFHSGSARWTSRHISSIKSLV 480
Query: 261 RP*GLVAQSGNSSVHG 308
RP G +A G SSVHG
Sbjct: 479 RPYGFIAHIGKSSVHG 432
>dbj|BD236521.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 323
Score = 164 bits (352), Expect = 2e-040
Identities = 61/82 (74%), Positives = 72/82 (87%)
Frame = -2 / +2
Query: 247 IEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHL 68
++ + RD++++DPDW+IILLRYFNPVGAHPSG IGEDP G+PNNLMP++QQVAVGR P L
Sbjct: 44 LKRLARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVL 223
Query: 67 TVYGTDYSTKDGTGVRDYIHVV 2
VYG DY TKDGT VRDYIHVV
Sbjct: 224 NVYGNDYQTKDGTAVRDYIHVV 289
>gb|DR177347.1|DR177347 RTMNUT1_4_F09.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_4_F09_A029 5', mRNA sequence
Length = 746
Score = 160 bits (344), Expect = 3e-039
Identities = 60/77 (77%), Positives = 68/77 (88%)
Frame = -2 / -2
Query: 232 RDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHLTVYGT 53
RD++++DPDW+II LRYFNPVGAHPSG IGEDP G+PNNLMP++QQVAVGR P L VYG
Sbjct: 742 RDIYKADPDWRIIXLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGN 563
Query: 52 DYSTKDGTGVRDYIHVV 2
DY TKDGT VRDYIHVV
Sbjct: 562 DYQTKDGTAVRDYIHVV 512
>gb|BG275620.1|BG275620 NXSI_144_A03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_144_A03 5' similar to Arabidopsis thaliana
sequence At1g12780 uridine diphosphate glucose epimerase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 522
Score = 154 bits (331), Expect = 2e-037
Identities = 59/72 (81%), Positives = 64/72 (88%)
Frame = -2 / +1
Query: 217 SDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHLTVYGTDYSTK 38
+DPDW+IILLRYFNPVGAHPSG IGEDP G+PNNLMP++QQVAVGR P L VYG DY TK
Sbjct: 1 ADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTK 180
Query: 37 DGTGVRDYIHVV 2
DGT VRDYIHVV
Sbjct: 181 DGTAVRDYIHVV 216
>gb|DT626458.1|DT626458 EST1158382 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAB05 5' end, mRNA sequence
Length = 723
Score = 154 bits (330), Expect = 2e-037
Identities = 56/75 (74%), Positives = 67/75 (89%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD++++DPDW+IILLRYFNPVGAHPSG IGEDP G
Sbjct: 497 PCVEDFQLSAMNPYGRTKLFLEEIARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKG 676
Query: 127 VPNNLMPYVQQVAVG 83
+PNNLMP++QQVAVG
Sbjct: 677 IPNNLMPFIQQVAVG 721
Score = 103 bits (220), Expect = 4e-022
Identities = 48/76 (63%), Positives = 55/76 (72%)
Frame = +3 / -1
Query: 81 LPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITSFV 260
LPTATC G+RLFG P GSSP++PLG*APTGLKYLS +I QSGS SR +SS S V
Sbjct: 723 LPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGSAL*ISRAISSRKSLV 544
Query: 261 RP*GLVAQSGNSSVHG 308
RP G +A+S SS G
Sbjct: 543 RPYGFIAES*KSSTQG 496
>gb|BX255434.1|BX255434 BX255434 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP005G04, mRNA sequence
Length = 668
Score = 151 bits (324), Expect = 2e-036
Identities = 58/70 (82%), Positives = 62/70 (88%)
Frame = -2 / +2
Query: 211 PDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDG 32
PDW+IILLRYFNPVGAHPSG IGEDP G+PNNLMP++QQVAVGR P L VYG DY TKDG
Sbjct: 2 PDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTKDG 181
Query: 31 TGVRDYIHVV 2
T VRDYIHVV
Sbjct: 182 TAVRDYIHVV 211
>gb|AI812993.1|AI812993 2E11 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 643
Score = 147 bits (316), Expect = 2e-035
Identities = 53/72 (73%), Positives = 64/72 (88%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD++++DPDW+IILLRYFNPVGAHPSG IGEDP G
Sbjct: 428 PCVEDFQLSAMNPYGRTKLFLEEIARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKG 607
Query: 127 VPNNLMPYVQQV 92
+PNNLMP++QQV
Sbjct: 608 IPNNLMPFIQQV 643
>gb|CX648556.1|CX648556 COLD1_29_A03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_29_A03_A029 5', mRNA sequence
Length = 695
Score = 141 bits (302), Expect = 2e-033
Identities = 50/69 (72%), Positives = 61/69 (88%)
Frame = -2 / +3
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD++++DPDW+IILLRYFNPVGAHPSG IGEDP G
Sbjct: 489 PCVEDFQLSAMNPYGRTKLFLEEIARDIYKADPDWRIILLRYFNPVGAHPSGQIGEDPKG 668
Query: 127 VPNNLMPYV 101
+PNNLMP++
Sbjct: 669 IPNNLMPFI 695
>gb|DR178249.1|DR178249 RTMNUT1_10_G12.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_10_G12_A029 3', mRNA sequence
Length = 777
Score = 140 bits (300), Expect = 3e-033
Identities = 55/67 (82%), Positives = 59/67 (88%)
Frame = -2 / +3
Query: 202 KIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGV 23
+IILLRYFNPVGAHPSG IGEDP G+PNNLMP++QQVAVGR P L VYG DY TKDGT V
Sbjct: 3 RIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTKDGTAV 182
Query: 22 RDYIHVV 2
RDYIHVV
Sbjct: 183 RDYIHVV 203
>gb|CV034239.1|CV034239 RTNACL1_39_C12.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_39_C12_A029 5', mRNA sequence
Length = 759
Score = 114 bits (244), Expect = 2e-025
Identities = 41/48 (85%), Positives = 46/48 (95%)
Frame = -2 / +3
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGA 164
PCTE+FP+CA NPYGRTKL IE+ICRDVHR+DP+WKIILLRYFNPVGA
Sbjct: 615 PCTEDFPICAMNPYGRTKLFIEEICRDVHRADPEWKIILLRYFNPVGA 758
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 166,398,729
Number of Sequences: 355925
Number of extensions: 1939644
Number of successful extensions: 134373
Number of sequences better than 1.0e-020: 28
length of database: 72,425,745
effective HSP length: 49
effective length of database: 54,985,420
effective search space used: 2914227260
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)