TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD15f02.sg.3.2
(2357 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO364891.1|CO364891 RTK1_22_A01.g1_A029 Roots minus pota... 158 2e-084
gb|DR054338.1|DR054338 RTCA1_16_E11.g1_A029 Roots minus cal... 284 3e-081
gb|DT632438.1|DT632438 EST1147369 Normalized pine embryo li... 129 6e-064
gb|CF395793.1|CF395793 RTDS2_17_D11.g1_A021 Drought-stresse... 243 3e-063
gb|DR685702.1|DR685702 EST1075779 Normalized pine embryo li... 243 3e-063
gb|DR684555.1|DR684555 EST1074632 Normalized pine embryo li... 131 1e-061
gb|CX646597.1|CX646597 COLD1_10_G07.b1_A029 Root cold Pinus... 237 2e-061
gb|CO158879.1|CO158879 FLD1_9_H04.g1_A029 Root flooded Pinu... 228 1e-058
gb|DT632176.1|DT632176 EST1147107 Normalized pine embryo li... 131 2e-058
gb|DR159966.1|DR159966 RTFE1_2_G03.g1_A029 Roots minus iron... 227 2e-058
gb|DT636373.1|DT636373 EST1151304 Normalized pine embryo li... 185 2e-051
gb|DR690821.1|DR690821 EST1080907 Normalized pine embryo li... 185 2e-051
gb|DT635547.1|DT635547 EST1150478 Normalized pine embryo li... 131 5e-047
gb|DR685003.1|DR685003 EST1075080 Normalized pine embryo li... 129 2e-046
gb|AI812357.1|AI812357 1D3 Pine Lambda Zap Xylem library Pi... 170 5e-041
gb|CF386312.1|CF386312 RTDR1_13_B08.g1_A015 Loblolly pine r... 101 7e-040
gb|AW226272.1|AW226272 ST80D10 Pine TriplEx shoot tip libra... 165 2e-039
gb|CX646677.1|CX646677 COLD1_10_G07.g1_A029 Root cold Pinus... 162 1e-038
gb|BX784084.1|BX784084 BX784084 Pinus pinaster differenciat... 145 1e-033
gb|CF396931.1|CF396931 RTDS2_25_H03.b1_A021 Drought-stresse... 138 2e-031
gb|BE123664.1|BE123664 NXNV_151_A06_F Nsf Xylem Normal wood... 124 2e-027
gb|CF475651.1|CF475651 RTWW2_11_E08.g1_A021 Well-watered lo... 115 2e-024
gb|DR742577.1|DR742577 RTCU1_5_D08.b2_A029 Roots plus added... 114 3e-024
gb|DR097746.1|DR097746 STRR1_36_E12.g3_A033 Stem Response R... 111 2e-023
>gb|CO364891.1|CO364891 RTK1_22_A01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_A01_A029 5', mRNA sequence
Length = 848
Score = 158 bits (339), Expect(3) = 2e-084
Identities = 62/87 (71%), Positives = 75/87 (86%)
Frame = +1 / +3
Query: 568 EEFDYTELDEVTEYYPQFYHGVDKEGRPVYIELVGKVDANKLIQVTTLDRYVKYHVKEFE 747
E+FD+ EL EV +YYPQ +HGVDK GRPVYIE +GKVD KL+QVTT++RY+KYHV+EFE
Sbjct: 588 EDFDFKELHEVLKYYPQGHHGVDKAGRPVYIERIGKVDPIKLMQVTTIERYLKYHVQEFE 767
Query: 748 KCFQMKFPACTIAAKKHIDSSTTILDV 828
K +KFPAC+IAAK HIDS+TTILDV
Sbjct: 768 KTLNVKFPACSIAAKSHIDSTTTILDV 848
Score = 131 bits (281), Expect(3) = 2e-084
Identities = 49/71 (69%), Positives = 59/71 (83%)
Frame = +1 / +3
Query: 361 IKDIRDVKELQDVETFRQCLIDEDLLPPQHDDYHMMLRFLKARKFEVEKAKSMWSDMINW 540
IKD+RD +E V+ FRQ LI EDLLPP+HDDYHMMLRFLKARKF++EK K MW++M+ W
Sbjct: 378 IKDVRDAEEQAAVDNFRQALIAEDLLPPRHDDYHMMLRFLKARKFDIEKTKQMWAEMLRW 557
Query: 541 RKEFGVDKIEE 573
RKE+G D IEE
Sbjct: 558 RKEYGADTIEE 590
Score = 101 bits (215), Expect(4) = 3e-039
Identities = 51/74 (68%), Positives = 54/74 (72%)
Frame = -1 / -2
Query: 827 TSKIVVDESMCFLAAMVQAGNFIWKHFSNSLTWYFTYRSRVVTCISLFASTFPTNSMYTG 648
TSKIVV ESM AAM QAGN +K FSNS T YF Y S VVTCISL ST P S+ TG
Sbjct: 847 TSKIVVVESM*LFAAMEQAGNLTFKVFSNS*T*YFRYLSIVVTCISLIGSTLPILSI*TG 668
Query: 647 LPSLSTP**NCG*Y 606
LP+LSTP** CG*Y
Sbjct: 667 LPALSTP**PCG*Y 626
Score = 75.3 bits (158), Expect(3) = 1e-022
Identities = 36/86 (41%), Positives = 53/86 (61%)
Frame = -3 / -1
Query: 825 IQNSSGRIYVLFSSNGASWKFHLEALLKFFDMVFYIPI*GCHLY*LVCINFSY*FYVYRS 646
IQN G I V F SNG + ++++LLKF +M+ I + C+L+ IN + Y+ S
Sbjct: 845 IQNCCGGIDVTFCSNGTGRELNIQSLLKFLNMILQISLNSCNLHQFNRINLANSLYINWS 666
Query: 645 SLFIYSMIKLWVILCHFI*LGVVKFL 568
S IYSM+ LW++L +F+*L VK L
Sbjct: 665 SSLIYSMMTLWIVLENFM*LFEVKIL 588
Score = 66.6 bits (139), Expect(3) = 3e-028
Identities = 35/86 (40%), Positives = 46/86 (53%)
Frame = +3 / +2
Query: 570 GI*LHRVR*SDRVLPTILSWSR*RGKTCIHRISRKS*CKQANTSDNPRSVCKIPCQRI*E 749
G *L R *S +VL T SWSR* KT ++R + + * + N + ++ C I*E
Sbjct: 590 GF*LQRAT*SSQVLSTRSSWSR*GWKTSLYRENWQG*SD*TDAGYNY*EISEVSCSGI*E 769
Query: 750 VLPDEISSLHHCC*KAHRFVHYYFGC 827
+ L HCC K+HRF H FGC
Sbjct: 770 DFEC*VPCLFHCCKKSHRFHHNNFGC 847
Score = 64.8 bits (135), Expect(3) = 2e-084
Identities = 24/37 (64%), Positives = 30/37 (81%)
Frame = +1 / +3
Query: 148 MSGPLDRFARPCFEGFVHNDERKESRSDADNSEGDKK 258
MSGPLDRFARPCFEG DER+E +SD +NSE +++
Sbjct: 168 MSGPLDRFARPCFEGSSAQDERRERKSDVENSEDERR 278
Score = 53.3 bits (110), Expect(3) = 3e-028
Identities = 20/47 (42%), Positives = 33/47 (70%)
Frame = +1 / +3
Query: 202 NDERKESRSDADNSEGDKKTKIGSFKKKAINAGNKFRHSLRRRSKKK 342
++ R+ ++ + +KTKIG+ KKKAINA KFRHSL++R+ ++
Sbjct: 225 DERRERKSDVENSEDERRKTKIGALKKKAINASTKFRHSLKKRNPRR 365
Score = 50.6 bits (104), Expect(4) = 3e-039
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = -3 / -1
Query: 561 VDSEFLPPIDHV*PHTLSFLNFKFPCF*EP*HHXXXXXXXXXXXXIN*ALSECLNILKLF 382
+ + L P H+ PH L FLN KFPCF E HH N L++ +N
Sbjct: 578 ISTILLSPTKHLSPHLLRFLNVKFPCFQESQHHMIIIMSGRQQVFCNKCLTKVINGRLFL 399
Query: 381 NVPYVLDGI 355
++ Y+L+ I
Sbjct: 398 SISYILNYI 372
Score = 45.1 bits (92), Expect(3) = 3e-028
Identities = 22/43 (51%), Positives = 25/43 (58%)
Frame = +2 / +1
Query: 422 LMRICCHHSTMIIT*C*GS*KHGNLKLRKLRVCGQT*SIGGRN 550
L + CC MII *C* S*K GNL LRK CG +G R+
Sbjct: 439 LQKTCCLPDMMIII*C*DS*KQGNLTLRKRSKCGLRCFVGERS 567
Score = 44.1 bits (90), Expect(3) = 1e-022
Identities = 19/31 (61%), Positives = 22/31 (70%)
Frame = -1 / -2
Query: 554 PNSFLQLIMSDHILLAFSTSNFRAFRNLNIM 462
P SFLQ +S HI FS SNF AF+NLNI+
Sbjct: 571 PYSFLQRSISAHICFVFSMSNFLAFKNLNII 479
Score = 37.3 bits (75), Expect(4) = 3e-039
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -1 / -2
Query: 194 NPSKHGLANRSRGPDI 147
+PSKHGLAN SRGPDI
Sbjct: 214 DPSKHGLANLSRGPDI 167
Score = 33.6 bits (67), Expect(3) = 1e-022
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -3 / -1
Query: 246 F*VVCIRSALFPFIVMYKPFKAWPSKSVERA*H 148
F ++ IR L PFI+ + K PSKSVER H
Sbjct: 266 FRILHIRFPLSPFILSRRSLKTRPSKSVERTRH 168
Score = 30.9 bits (61), Expect(4) = 3e-039
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -1 / -2
Query: 296 ALIAFFLKDPILVFL 252
ALIAFFL+ PILVFL
Sbjct: 319 ALIAFFLRAPILVFL 275
>gb|DR054338.1|DR054338 RTCA1_16_E11.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_16_E11_A029 5', mRNA sequence
Length = 627
Score = 284 bits (615), Expect(2) = 3e-081
Identities = 113/150 (75%), Positives = 132/150 (88%)
Frame = +1 / +2
Query: 661 ELVGKVDANKLIQVTTLDRYVKYHVKEFEKCFQMKFPACTIAAKKHIDSSTTILDVQGVG 840
E +GKVD KL+QVTT++RY+KYHV+EFEK +KFPAC+IAAK HIDS+TTILDVQGVG
Sbjct: 2 ERIGKVDPIKLMQVTTIERYLKYHVQEFEKTLNVKFPACSIAAKSHIDSTTTILDVQGVG 181
Query: 841 FKNFSKSARELITRLQKIDSDNYPETLCRMYIINAGQGFKMLWSTIKSFLDPKTASKIHV 1020
KNF+KSARELI R+QKID DNYPETLC+M+IINAG GF++LW+TIKSFLDPKT +KIHV
Sbjct: 182 LKNFNKSARELILRIQKIDGDNYPETLCQMFIINAGAGFRLLWNTIKSFLDPKTTAKIHV 361
Query: 1021 LGNKYQHKLLEIIDECELPEFLGGKCNCIE 1110
LGNKYQ KLLE+ID +LPEFLGG C C E
Sbjct: 362 LGNKYQSKLLEVIDASQLPEFLGGNCVCPE 451
Score = 170 bits (366), Expect(2) = 5e-044
Identities = 86/142 (60%), Positives = 95/142 (66%)
Frame = -1 / -1
Query: 1094 LPPRNXXXXXXXXXXSNLC*YLFPRTWILEAVFGSRNDFIVLHNILKPWPALIIYIRHSV 915
LPP+N +L *YLFP T I VFGSR FIV H+ LKP PAL++ I H+V
Sbjct: 435 LPPKNSGNWLASMTSKSLL*YLFPSTCIFAVVFGSRKLFIVFHSNLKPAPALMMNI*HNV 256
Query: 914 SG*LSLSIFCNRVINSLADFEKFLKPTPCTSKIVVDESMCFLAAMVQAGNFIWKHFSNSL 735
SG*LS SIF R I+SLAD KFL+PTP TSKIVV ESM AAM QAGN +K FSNS
Sbjct: 255 SG*LSPSIF*IRNISSLADLLKFLRPTPWTSKIVVVESM*LFAAMEQAGNLTFKVFSNS* 76
Query: 734 TWYFTYRSRVVTCISLFASTFP 669
T YF Y S VVTCISL ST P
Sbjct: 75 T*YFRYLSIVVTCISLIGSTLP 10
Score = 118 bits (253), Expect(2) = 2e-026
Identities = 61/147 (41%), Positives = 84/147 (57%)
Frame = -3 / -3
Query: 1110 FNTIAFATKKFWQFTLVNYFEQLMLILIPKNMDLGSSFWIEE*FYCAP*HLEALASINYI 931
F T AT+KF Q +N F +L LILI K M L S WI+E FY P* + I+
Sbjct: 451 FRTYTVATQKFRQLACINDF*ELALILISKYMYLCSCLWIKETFYSVP*QSKTSTCIDDE 272
Query: 930 HPAQCLWVVITVDLL*SCD*FSGRFREVLETHALHIQNSSGRIYVLFSSNGASWKFHLEA 751
H QCL +V+ V+ L + FS R E+L+TH L IQN G I V F SNG + ++++
Sbjct: 271 HLTQCLRIVVPVNFLNT*YKFSCRLIEILKTHTLDIQNCCGGIDVTFCSNGTGRELNIQS 92
Query: 750 LLKFFDMVFYIPI*GCHLY*LVCINFS 670
LLKF +M+ I + C+L+ IN +
Sbjct: 91 LLKFLNMILQISLNSCNLHQFNRINLA 11
Score = 40.0 bits (81), Expect(2) = 3e-081
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +1 / +2
Query: 1111 GCQRSDKGPWKDPNIIKRV 1167
GC SDKGPWKDP I+K V
Sbjct: 458 GCLASDKGPWKDPEIMKLV 514
Score = 29.5 bits (58), Expect(2) = 5e-044
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1 / -1
Query: 1166 TLFIMLGSFQGPLSDLWQPSIQLH 1095
T FI+ GSF GPLSD P H
Sbjct: 513 TNFIISGSFHGPLSDARHPPSSGH 442
Score = 22.6 bits (43), Expect(2) = 2e-026
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3 / -3
Query: 1161 LYYVGILPRTFVRSLA 1114
L+Y+ ILPR+ VR A
Sbjct: 508 LHYLWILPRSLVRCKA 461
>gb|DT632438.1|DT632438 EST1147369 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFK03 3' end, mRNA sequence
Length = 855
Score = 129 bits (276), Expect(3) = 6e-064
Identities = 48/71 (67%), Positives = 59/71 (83%)
Frame = +1 / +3
Query: 361 IKDIRDVKELQDVETFRQCLIDEDLLPPQHDDYHMMLRFLKARKFEVEKAKSMWSDMINW 540
IKD+R+ +E V+ FRQ LI EDLLPP+HDDYHMMLRFLKARKF++EK K MW++M+ W
Sbjct: 489 IKDVRNAEEQAAVDNFRQALIAEDLLPPRHDDYHMMLRFLKARKFDIEKTKQMWAEMLRW 668
Query: 541 RKEFGVDKIEE 573
RKE+G D IEE
Sbjct: 669 RKEYGADTIEE 701
Score = 91.3 bits (193), Expect(3) = 6e-064
Identities = 35/52 (67%), Positives = 44/52 (84%)
Frame = +1 / +3
Query: 568 EEFDYTELDEVTEYYPQFYHGVDKEGRPVYIELVGKVDANKLIQVTTLDRYV 723
E+FD+ EL EV +YYPQ +HGVDK GRPVYIE +GKVD KL+QVTT++RY+
Sbjct: 699 EDFDFKELHEVLKYYPQGHHGVDKAGRPVYIERIGKVDPIKLMQVTTIERYL 854
Score = 64.8 bits (135), Expect(3) = 6e-064
Identities = 24/37 (64%), Positives = 30/37 (81%)
Frame = +1 / +3
Query: 148 MSGPLDRFARPCFEGFVHNDERKESRSDADNSEGDKK 258
MSGPLDRFARPCFEG DER+E +SD +NSE +++
Sbjct: 279 MSGPLDRFARPCFEGSSAQDERRERKSDVENSEDERR 389
Score = 57.4 bits (119), Expect(4) = 2e-025
Identities = 27/38 (71%), Positives = 29/38 (76%)
Frame = -1 / -3
Query: 719 YRSRVVTCISLFASTFPTNSMYTGLPSLSTP**NCG*Y 606
Y S VVTCISL ST P S+ TGLP+LSTP** CG*Y
Sbjct: 850 YLSIVVTCISLIGSTLPILSI*TGLPALSTP**PCG*Y 737
Score = 50.6 bits (104), Expect(4) = 2e-025
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = -3 / -2
Query: 561 VDSEFLPPIDHV*PHTLSFLNFKFPCF*EP*HHXXXXXXXXXXXXIN*ALSECLNILKLF 382
+ + L P H+ PH L FLN KFPCF E HH N L++ +N
Sbjct: 689 ISTILLSPTKHLSPHLLRFLNVKFPCFQESQHHMIIIMSGRQQVFCNKCLTKVINGRLFL 510
Query: 381 NVPYVLDGI 355
++ Y+L+ I
Sbjct: 509 SISYILNYI 483
Score = 37.3 bits (75), Expect(4) = 2e-025
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -1 / -3
Query: 194 NPSKHGLANRSRGPDI 147
+PSKHGLAN SRGPDI
Sbjct: 325 DPSKHGLANLSRGPDI 278
Score = 27.2 bits (53), Expect(4) = 2e-025
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -1 / -3
Query: 296 ALIAFFLKDPILVFL 252
ALIAFFL+ ILVFL
Sbjct: 430 ALIAFFLRATILVFL 386
>gb|CF395793.1|CF395793 RTDS2_17_D11.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_17_D11_A021 5', mRNA sequence
Length = 773
Score = 243 bits (526), Expect = 3e-063
Identities = 98/193 (50%), Positives = 129/193 (66%)
Frame = +1 / +1
Query: 568 EEFDYTELDEVTEYYPQFYHGVDKEGRPVYIELVGKVDANKLIQVTTLDRYVKYHVKEFE 747
E F + E V E YP F+H +DK GRPVYIE +G++ +L++VTTLDR ++YHVKE+E
Sbjct: 19 ETFQFPERKRVKELYPHFHHKMDKFGRPVYIERLGQLQLEELLKVTTLDRMLQYHVKEWE 198
Query: 748 KCFQMKFPACTIAAKKHIDSSTTILDVQGVGFKNFSKSARELITRLQKIDSDNYPETLCR 927
KFPAC+ A + I+ S TILD++GV K+ SK R I ++ K+D D YPE L +
Sbjct: 199 ILIDWKFPACSRKAGRTINQSLTILDLKGVSVKHMSKQVRHFIQKISKMDQDYYPEYLGK 378
Query: 928 MYIINAGQGFKMLWSTIKSFLDPKTASKIHVLGNKYQHKLLEIIDECELPEFLGGKCNCI 1107
M I+N+ FK +WS IK +LD +T KI V G+ Y HKLLE++D LPEFLGG C C
Sbjct: 379 MIIVNSPTTFKAIWSIIKPWLDKRTQKKIEVHGSNYAHKLLELVDAENLPEFLGGSCKCP 558
Query: 1108 EGCQRSDKGPWKD 1146
GC+ SD GPW D
Sbjct: 559 GGCENSDAGPWND 597
>gb|DR685702.1|DR685702 EST1075779 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB689 3' end, mRNA sequence
Length = 865
Score = 243 bits (526), Expect = 3e-063
Identities = 98/193 (50%), Positives = 129/193 (66%)
Frame = +1 / +1
Query: 568 EEFDYTELDEVTEYYPQFYHGVDKEGRPVYIELVGKVDANKLIQVTTLDRYVKYHVKEFE 747
E F + E V E YP F+H +DK GRPVYIE +G++ +L++VTTLDR ++YHVKE+E
Sbjct: 232 ETFQFPERKRVKELYPHFHHKIDKFGRPVYIERLGQLQLEELLKVTTLDRMLQYHVKEWE 411
Query: 748 KCFQMKFPACTIAAKKHIDSSTTILDVQGVGFKNFSKSARELITRLQKIDSDNYPETLCR 927
KFPAC+ A + I+ S TILD++GV K+ SK R I ++ K+D D YPE L +
Sbjct: 412 ILIDWKFPACSRKAGRTINQSLTILDLKGVSVKHMSKQVRHFIQKILKMDQDYYPEYLGK 591
Query: 928 MYIINAGQGFKMLWSTIKSFLDPKTASKIHVLGNKYQHKLLEIIDECELPEFLGGKCNCI 1107
M I+N+ FK +WS IK +LD +T KI V G+ Y HKLLE++D LPEFLGG C C
Sbjct: 592 MIIVNSPTTFKAIWSIIKPWLDKRTQKKIEVHGSNYAHKLLELVDAENLPEFLGGSCKCP 771
Query: 1108 EGCQRSDKGPWKD 1146
GC+ SD GPW D
Sbjct: 772 GGCENSDAGPWND 810
>gb|DR684555.1|DR684555 EST1074632 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAU07 3' end, mRNA sequence
Length = 801
Score = 131 bits (281), Expect(4) = 1e-061
Identities = 49/71 (69%), Positives = 59/71 (83%)
Frame = +1 / +1
Query: 361 IKDIRDVKELQDVETFRQCLIDEDLLPPQHDDYHMMLRFLKARKFEVEKAKSMWSDMINW 540
IKD+RD +E V+ FRQ LI EDLLPP+HDDYHMMLRFLKARKF++EK K MW++M+ W
Sbjct: 427 IKDVRDAEEQAAVDNFRQALIAEDLLPPRHDDYHMMLRFLKARKFDIEKTKQMWAEMLRW 606
Query: 541 RKEFGVDKIEE 573
RKE+G D IEE
Sbjct: 607 RKEYGADTIEE 639
Score = 62.9 bits (131), Expect(4) = 1e-061
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +1 / +1
Query: 568 EEFDYTELDEVTEYYPQFYHGVDKEGRPVYIELVGKV 678
E+FD+ EL EV +YYPQ +HGVDK GRPVYIE + ++
Sbjct: 637 EDFDFKELHEVLKYYPQGHHGVDKAGRPVYIERLARL 747
Score = 61.1 bits (127), Expect(4) = 1e-061
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +1 / +1
Query: 148 MSGPLDRFARPCFEGFVHNDERKESRSDADNSEGDKK 258
MSGPLDRFARPCFE DER+E +SD +NSE +++
Sbjct: 217 MSGPLDRFARPCFERSSAQDERRERKSDVENSEDERR 327
Score = 50.6 bits (104), Expect(5) = 2e-024
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = -3 / -1
Query: 561 VDSEFLPPIDHV*PHTLSFLNFKFPCF*EP*HHXXXXXXXXXXXXIN*ALSECLNILKLF 382
+ + L P H+ PH L FLN KFPCF E HH N L++ +N
Sbjct: 627 ISTILLSPTKHLSPHLLRFLNVKFPCFQESQHHMIIIMSGRQQVFCNKCLTKVINGRLFL 448
Query: 381 NVPYVLDGI 355
++ Y+L+ I
Sbjct: 447 SISYILNYI 421
Score = 40.0 bits (81), Expect(4) = 1e-061
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +1 / +3
Query: 667 VGKVDANKLIQVTTLDRYVKYH 732
+GKVD KL+ VTT++RY+KYH
Sbjct: 735 IGKVDPIKLMHVTTIERYLKYH 800
Score = 36.3 bits (73), Expect(5) = 2e-024
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = -3 / -1
Query: 660 YVYRSSLFIYSMIKLWVILCHFI*LGVVKFL 568
Y+ SS IYSM+ LW++L +F+*L VK L
Sbjct: 729 YINWSSSLIYSMMTLWIVLENFM*LFEVKIL 637
Score = 34.1 bits (68), Expect(5) = 2e-024
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = -1 / -3
Query: 728 YFTYRSRVVTCISLFASTFP 669
YF Y S VVTCISL ST P
Sbjct: 796 YFRYLSIVVTCISLIGSTLP 737
Score = 33.6 bits (67), Expect(5) = 2e-024
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -3 / -1
Query: 246 F*VVCIRSALFPFIVMYKPFKAWPSKSVERA*H 148
F ++ IR L PFI+ + K PSKSVER H
Sbjct: 315 FRILHIRFPLSPFILSRRSLKTRPSKSVERTRH 217
Score = 30.9 bits (61), Expect(5) = 2e-024
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -1 / -2
Query: 296 ALIAFFLKDPILVFL 252
ALIAFFL+ PILVFL
Sbjct: 368 ALIAFFLRAPILVFL 324
>gb|CX646597.1|CX646597 COLD1_10_G07.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_10_G07_A029 3', mRNA sequence
Length = 861
Score = 237 bits (512), Expect = 2e-061
Identities = 95/183 (51%), Positives = 125/183 (68%)
Frame = +1 / +3
Query: 598 VTEYYPQFYHGVDKEGRPVYIELVGKVDANKLIQVTTLDRYVKYHVKEFEKCFQMKFPAC 777
V E YP F+H +DK GRPVYIE +G++ +L++VTTLDR ++YHVKE+E KFPAC
Sbjct: 12 VKELYPHFHHKMDKFGRPVYIERLGQLQLEELLKVTTLDRMLQYHVKEWEILIDWKFPAC 191
Query: 778 TIAAKKHIDSSTTILDVQGVGFKNFSKSARELITRLQKIDSDNYPETLCRMYIINAGQGF 957
+ A + I+ S TILD++GV K+ SK R I ++ K+D D YPE L +M I+N+ F
Sbjct: 192 SRKAGRTINQSLTILDLKGVSVKHMSKQVRHFIQKISKMDQDYYPEYLGKMIIVNSPTTF 371
Query: 958 KMLWSTIKSFLDPKTASKIHVLGNKYQHKLLEIIDECELPEFLGGKCNCIEGCQRSDKGP 1137
K +WS IK +LD +T KI V G+ Y HKLLE++D LPEFLGG C C GC+ SD GP
Sbjct: 372 KAIWSIIKPWLDKRTQKKIEVHGSNYAHKLLELVDAENLPEFLGGSCKCPGGCENSDAGP 551
Query: 1138 WKD 1146
W D
Sbjct: 552 WND 560
>gb|CO158879.1|CO158879 FLD1_9_H04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_9_H04_A029 5', mRNA sequence
Length = 765
Score = 228 bits (493), Expect = 1e-058
Identities = 91/176 (51%), Positives = 121/176 (68%)
Frame = +1 / -2
Query: 619 FYHGVDKEGRPVYIELVGKVDANKLIQVTTLDRYVKYHVKEFEKCFQMKFPACTIAAKKH 798
F+H +DK GRPVYIE +G++ +L++VTTLDR ++YHVKE+E KFPAC+ A +
Sbjct: 761 FHHKIDKFGRPVYIERLGQLQLEELLKVTTLDRMLQYHVKEWEILIDWKFPACSRKAGRT 582
Query: 799 IDSSTTILDVQGVGFKNFSKSARELITRLQKIDSDNYPETLCRMYIINAGQGFKMLWSTI 978
I+ S TILD++GV K+ SK R I ++ K+D D YPE L +M I+N+ FK +WS I
Sbjct: 581 INQSLTILDLKGVSVKHMSKQVRHFIQKISKMDQDYYPEYLGKMIIVNSPTTFKAIWSII 402
Query: 979 KSFLDPKTASKIHVLGNKYQHKLLEIIDECELPEFLGGKCNCIEGCQRSDKGPWKD 1146
K +LD +T KI V G+ Y HKLLE++D LPEFLGG C C GC+ SD GPW D
Sbjct: 401 KPWLDKRTQKKIEVHGSNYAHKLLELVDAENLPEFLGGSCKCPGGCENSDAGPWND 234
>gb|DT632176.1|DT632176 EST1147107 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFH28 3' end, mRNA sequence
Length = 772
Score = 131 bits (281), Expect(3) = 2e-058
Identities = 49/71 (69%), Positives = 59/71 (83%)
Frame = +1 / +3
Query: 361 IKDIRDVKELQDVETFRQCLIDEDLLPPQHDDYHMMLRFLKARKFEVEKAKSMWSDMINW 540
IKD+RD +E V+ FRQ LI EDLLPP+HDDYHMMLRFLKARKF++EK K MW++M+ W
Sbjct: 435 IKDVRDAEEQAAVDNFRQALIAEDLLPPRHDDYHMMLRFLKARKFDIEKTKQMWAEMLRW 614
Query: 541 RKEFGVDKIEE 573
RKE+G D IEE
Sbjct: 615 RKEYGADTIEE 647
Score = 74.4 bits (156), Expect(3) = 2e-058
Identities = 29/42 (69%), Positives = 34/42 (80%)
Frame = +1 / +3
Query: 568 EEFDYTELDEVTEYYPQFYHGVDKEGRPVYIELVGKVDANKL 693
E+FD+ EL EV +YYPQ +HGVDK GRPVYIE +GKVD KL
Sbjct: 645 EDFDFKELHEVLKYYPQGHHGVDKAGRPVYIERIGKVDPIKL 770
Score = 61.1 bits (127), Expect(3) = 2e-058
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +1 / +3
Query: 148 MSGPLDRFARPCFEGFVHNDERKESRSDADNSEGDKK 258
MSGPLDRFARPCFE DER+E +SD +NSE +++
Sbjct: 225 MSGPLDRFARPCFERSSAQDERRERKSDVENSEDERR 335
Score = 50.6 bits (104), Expect(4) = 1e-021
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = -3 / -3
Query: 561 VDSEFLPPIDHV*PHTLSFLNFKFPCF*EP*HHXXXXXXXXXXXXIN*ALSECLNILKLF 382
+ + L P H+ PH L FLN KFPCF E HH N L++ +N
Sbjct: 635 ISTILLSPTKHLSPHLLRFLNVKFPCFQESQHHMIIIMSGRQQVFCNKCLTKVINGRLFL 456
Query: 381 NVPYVLDGI 355
++ Y+L+ I
Sbjct: 455 SISYILNYI 429
Score = 44.6 bits (91), Expect(4) = 1e-021
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = -1 / -1
Query: 695 ISLFASTFPTNSMYTGLPSLSTP**NCG*Y 606
ISL ST P S+ TGLP+LSTP** CG*Y
Sbjct: 772 ISLIGSTLPILSI*TGLPALSTP**PCG*Y 683
Score = 33.6 bits (67), Expect(4) = 1e-021
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -3 / -3
Query: 246 F*VVCIRSALFPFIVMYKPFKAWPSKSVERA*H 148
F ++ IR L PFI+ + K PSKSVER H
Sbjct: 323 FRILHIRFPLSPFILSRRSLKTRPSKSVERTRH 225
Score = 30.9 bits (61), Expect(4) = 1e-021
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -1 / -1
Query: 296 ALIAFFLKDPILVFL 252
ALIAFFL+ PILVFL
Sbjct: 376 ALIAFFLRAPILVFL 332
>gb|DR159966.1|DR159966 RTFE1_2_G03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_2_G03_A029 5', mRNA sequence
Length = 785
Score = 227 bits (491), Expect = 2e-058
Identities = 91/176 (51%), Positives = 121/176 (68%)
Frame = +1 / -2
Query: 619 FYHGVDKEGRPVYIELVGKVDANKLIQVTTLDRYVKYHVKEFEKCFQMKFPACTIAAKKH 798
F+H +DK GRPVYIE +G++ +L++VTTLDR ++YHVKE+E KFPAC+ A +
Sbjct: 784 FHHKMDKFGRPVYIERLGQLQLEELLKVTTLDRMLQYHVKEWEILIDWKFPACSRKAGRT 605
Query: 799 IDSSTTILDVQGVGFKNFSKSARELITRLQKIDSDNYPETLCRMYIINAGQGFKMLWSTI 978
I+ S TILD++GV K+ SK R I ++ K+D D YPE L +M I+N+ FK +WS I
Sbjct: 604 INQSLTILDLKGVSVKHMSKQVRHFIQKISKMDQDYYPEYLGKMIIVNSPTTFKAIWSII 425
Query: 979 KSFLDPKTASKIHVLGNKYQHKLLEIIDECELPEFLGGKCNCIEGCQRSDKGPWKD 1146
K +LD +T KI V G+ Y HKLLE++D LPEFLGG C C GC+ SD GPW D
Sbjct: 424 KPWLDKRTQKKIEVHGSNYAHKLLELVDAENLPEFLGGSCKCPGGCENSDAGPWND 257
>gb|DT636373.1|DT636373 EST1151304 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGR10 3' end, mRNA sequence
Length = 809
Score = 185 bits (398), Expect(2) = 2e-051
Identities = 73/95 (76%), Positives = 83/95 (87%)
Frame = +1 / +3
Query: 826 VQGVGFKNFSKSARELITRLQKIDSDNYPETLCRMYIINAGQGFKMLWSTIKSFLDPKTA 1005
VQGVG KNF+KSARELI R+QKID DNYPETLC+M+IINAG GF++LW+TIKSFLDPKT
Sbjct: 9 VQGVGLKNFNKSARELILRIQKIDGDNYPETLCQMFIINAGAGFRLLWNTIKSFLDPKTT 188
Query: 1006 SKIHVLGNKYQHKLLEIIDECELPEFLGGKCNCIE 1110
+KIHVLGNKYQ KLLE+ID +LPEFL G C C E
Sbjct: 189 AKIHVLGNKYQSKLLEVIDASQLPEFLSGNCVCPE 293
Score = 104 bits (222), Expect(2) = 2e-024
Identities = 51/90 (56%), Positives = 59/90 (65%)
Frame = -1 / -2
Query: 1094 LPPRNXXXXXXXXXXSNLC*YLFPRTWILEAVFGSRNDFIVLHNILKPWPALIIYIRHSV 915
LP +N +L *YLFP T I VFGSR FIV H+ LKP PAL++ I H+V
Sbjct: 277 LPLKNSGNWLASMTSKSLL*YLFPSTCIFAVVFGSRKLFIVFHSNLKPAPALMMNI*HNV 98
Query: 914 SG*LSLSIFCNRVINSLADFEKFLKPTPCT 825
SG*LS SIFC R I+SLAD KFL+PTP T
Sbjct: 97 SG*LSPSIFCIRNISSLADLLKFLRPTPWT 8
Score = 40.0 bits (81), Expect(2) = 2e-051
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +1 / +3
Query: 1111 GCQRSDKGPWKDPNIIKRV 1167
GC SDKGPWKDP I+K V
Sbjct: 300 GCLASDKGPWKDPEIMKLV 356
Score = 29.5 bits (58), Expect(2) = 2e-024
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1 / -2
Query: 1166 TLFIMLGSFQGPLSDLWQPSIQLH 1095
T FI+ GSF GPLSD P H
Sbjct: 355 TNFIISGSFHGPLSDARHPPSSGH 284
>gb|DR690821.1|DR690821 EST1080907 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACZ70 3' end, mRNA sequence
Length = 801
Score = 185 bits (398), Expect(2) = 2e-051
Identities = 73/95 (76%), Positives = 83/95 (87%)
Frame = +1 / +1
Query: 826 VQGVGFKNFSKSARELITRLQKIDSDNYPETLCRMYIINAGQGFKMLWSTIKSFLDPKTA 1005
VQGVG KNF+KSARELI R+QKID DNYPETLC+M+IINAG GF++LW+TIKSFLDPKT
Sbjct: 1 VQGVGLKNFNKSARELILRIQKIDGDNYPETLCQMFIINAGAGFRLLWNTIKSFLDPKTT 180
Query: 1006 SKIHVLGNKYQHKLLEIIDECELPEFLGGKCNCIE 1110
+KIHVLGNKYQ KLLE+ID +LPEFL G C C E
Sbjct: 181 AKIHVLGNKYQSKLLEVIDASQLPEFLSGNCVCPE 285
Score = 103 bits (219), Expect(2) = 6e-024
Identities = 50/88 (56%), Positives = 58/88 (65%)
Frame = -1 / -2
Query: 1094 LPPRNXXXXXXXXXXSNLC*YLFPRTWILEAVFGSRNDFIVLHNILKPWPALIIYIRHSV 915
LP +N +L *YLFP T I VFGSR FIV H+ LKP PAL++ I H+V
Sbjct: 269 LPLKNSGNWLASMTSKSLL*YLFPSTCIFAVVFGSRKLFIVFHSNLKPAPALMMNI*HNV 90
Query: 914 SG*LSLSIFCNRVINSLADFEKFLKPTP 831
SG*LS SIFC R I+SLAD KFL+PTP
Sbjct: 89 SG*LSPSIFCIRNISSLADLLKFLRPTP 6
Score = 40.0 bits (81), Expect(2) = 2e-051
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +1 / +1
Query: 1111 GCQRSDKGPWKDPNIIKRV 1167
GC SDKGPWKDP I+K V
Sbjct: 292 GCLASDKGPWKDPEIMKLV 348
Score = 29.5 bits (58), Expect(2) = 6e-024
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1 / -2
Query: 1166 TLFIMLGSFQGPLSDLWQPSIQLH 1095
T FI+ GSF GPLSD P H
Sbjct: 347 TNFIISGSFHGPLSDARHPPSSGH 276
>gb|DT635547.1|DT635547 EST1150478 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGI03 3' end, mRNA sequence
Length = 746
Score = 131 bits (281), Expect(3) = 5e-047
Identities = 49/71 (69%), Positives = 59/71 (83%)
Frame = +1 / +1
Query: 361 IKDIRDVKELQDVETFRQCLIDEDLLPPQHDDYHMMLRFLKARKFEVEKAKSMWSDMINW 540
IKD+RD +E V+ FRQ LI EDLLPP+HDDYHMMLRFLKARKF++EK K MW++M+ W
Sbjct: 484 IKDVRDAEEQAAVDNFRQALIAEDLLPPRHDDYHMMLRFLKARKFDIEKTKQMWAEMLRW 663
Query: 541 RKEFGVDKIEE 573
RKE+G D IEE
Sbjct: 664 RKEYGADTIEE 696
Score = 64.8 bits (135), Expect(3) = 5e-047
Identities = 24/37 (64%), Positives = 30/37 (81%)
Frame = +1 / +1
Query: 148 MSGPLDRFARPCFEGFVHNDERKESRSDADNSEGDKK 258
MSGPLDRFARPCFEG DER+E +SD +NSE +++
Sbjct: 274 MSGPLDRFARPCFEGSSAQDERRERKSDVENSEDERR 384
Score = 32.2 bits (64), Expect(3) = 5e-047
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1 / +1
Query: 568 EEFDYTELDEVTEYYPQ 618
E+FD+ EL EV +YYPQ
Sbjct: 694 EDFDFKELHEVLKYYPQ 744
>gb|DR685003.1|DR685003 EST1075080 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAZ05 3' end, mRNA sequence
Length = 743
Score = 129 bits (276), Expect(3) = 2e-046
Identities = 48/71 (67%), Positives = 59/71 (83%)
Frame = +1 / +1
Query: 361 IKDIRDVKELQDVETFRQCLIDEDLLPPQHDDYHMMLRFLKARKFEVEKAKSMWSDMINW 540
IKD+R+ +E V+ FRQ LI EDLLPP+HDDYHMMLRFLKARKF++EK K MW++M+ W
Sbjct: 481 IKDVRNAEEQAAVDNFRQALIAEDLLPPRHDDYHMMLRFLKARKFDIEKTKQMWAEMLRW 660
Query: 541 RKEFGVDKIEE 573
RKE+G D IEE
Sbjct: 661 RKEYGADTIEE 693
Score = 64.8 bits (135), Expect(3) = 2e-046
Identities = 24/37 (64%), Positives = 30/37 (81%)
Frame = +1 / +1
Query: 148 MSGPLDRFARPCFEGFVHNDERKESRSDADNSEGDKK 258
MSGPLDRFARPCFEG DER+E +SD +NSE +++
Sbjct: 271 MSGPLDRFARPCFEGSSAQDERRERKSDVENSEDERR 381
Score = 32.2 bits (64), Expect(3) = 2e-046
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1 / +1
Query: 568 EEFDYTELDEVTEYYPQ 618
E+FD+ EL EV +YYPQ
Sbjct: 691 EDFDFKELHEVLKYYPQ 741
>gb|AI812357.1|AI812357 1D3 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 564
Score = 170 bits (365), Expect = 5e-041
Identities = 70/145 (48%), Positives = 97/145 (66%)
Frame = +1 / +3
Query: 568 EEFDYTELDEVTEYYPQFYHGVDKEGRPVYIELVGKVDANKLIQVTTLDRYVKYHVKEFE 747
E F + E V E YP F+H +DK GRPVYIE +G++ +L++VTTLDR ++YHVKE+E
Sbjct: 123 ETFQFPERKRVKELYPHFHHKMDKFGRPVYIERLGQLQLEELLKVTTLDRMLQYHVKEWE 302
Query: 748 KCFQMKFPACTIAAKKHIDSSTTILDVQGVGFKNFSKSARELITRLQKIDSDNYPETLCR 927
KFPAC+ A + I+ S TILD++GV K+ SK R I ++ K+D D YPE L +
Sbjct: 303 ILIDWKFPACSRKAGRTINQSLTILDLKGVSVKHMSKQVRHFIQKISKMDQDYYPEYLGK 482
Query: 928 MYIINAGQGFKMLWSTIKSFLDPKT 1002
M I+N+ FK +WS IK +LD +T
Sbjct: 483 MIIVNSPTTFKAIWSIIKPWLDKRT 557
>gb|CF386312.1|CF386312 RTDR1_13_B08.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_13_B08_A015 5', mRNA
sequence
Length = 754
Score = 101 bits (216), Expect(3) = 7e-040
Identities = 42/98 (42%), Positives = 60/98 (61%)
Frame = +1 / +2
Query: 559 DKIEEFDYTELDEVTEYYPQFYHGVDKEGRPVYIELVGKVDANKLIQVTTLDRYVKYHVK 738
D + FD+ E V EYYPQ+YH DK+GRP+YIE +G ++ L + TT +R +K V
Sbjct: 323 DIVANFDFAEKALVDEYYPQYYHKTDKDGRPIYIERLGLLNIEGLYKATTPERQLKRLVW 502
Query: 739 EFEKCFQMKFPACTIAAKKHIDSSTTILDVQGVGFKNF 852
E+EK + PAC+ A +++S TILD+ V NF
Sbjct: 503 EYEKFINERLPACSKAVGHPVETSCTILDLHNVSLANF 616
Score = 55.6 bits (115), Expect(3) = 7e-040
Identities = 26/63 (41%), Positives = 37/63 (58%)
Frame = +1 / +2
Query: 379 VKELQDVETFRQCLIDEDLLPPQHDDYHMMLRFLKARKFEVEKAKSMWSDMINWRKEFGV 558
V + Q ++ ++ L +E + D +LRFL+ARKF+V KAK M WRKEFGV
Sbjct: 140 VPQQQALDALKKQLKEEGHFVEERMDDATLLRFLRARKFDVAKAKDMLVSAEQWRKEFGV 319
Query: 559 DKI 567
+ I
Sbjct: 320 EDI 328
Score = 46.9 bits (96), Expect(3) = 7e-040
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1 / +2
Query: 865 RELITRLQKIDSDNYPETLCRMYIINAGQGFKMLWSTIKSFLD 993
++ + + I D YPE + + YIINA F M+W IK +LD
Sbjct: 626 KDYVMKASSIGQDRYPECMGKFYIINAPWAFSMVWGIIKPWLD 754
>gb|AW226272.1|AW226272 ST80D10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST80D10, mRNA sequence
Length = 285
Score = 165 bits (354), Expect = 2e-039
Identities = 66/91 (72%), Positives = 78/91 (85%)
Frame = +1 / +1
Query: 595 EVTEYYPQFYHGVDKEGRPVYIELVGKVDANKLIQVTTLDRYVKYHVKEFEKCFQMKFPA 774
EV +YYPQ +HGVDK GRPVYIE +GKVD KL+QVTT++RY+KYHV+EF K +KFPA
Sbjct: 1 EVLKYYPQGHHGVDKAGRPVYIERIGKVDPIKLMQVTTIERYLKYHVQEFXKTLNVKFPA 180
Query: 775 CTIAAKKHIDSSTTILDVQGVGFKNFSKSAR 867
C+IAAK HIDS+TTIL VQGVG KNF+KSAR
Sbjct: 181 CSIAAKSHIDSTTTILXVQGVGLKNFNKSAR 273
Score = 116 bits (248), Expect = 6e-025
Identities = 58/90 (64%), Positives = 62/90 (68%)
Frame = -1 / -2
Query: 875 INSLADFEKFLKPTPCTSKIVVDESMCFLAAMVQAGNFIWKHFSNSLTWYFTYRSRVVTC 696
I LAD KFL+PTP T KIVV ESM AAM QAGN +K NS T YF Y S VVTC
Sbjct: 281 IXXLADLLKFLRPTPWTXKIVVVESM*LFAAMEQAGNLTFKVXXNS*T*YFRYLSIVVTC 102
Query: 695 ISLFASTFPTNSMYTGLPSLSTP**NCG*Y 606
ISL ST P S+ TGLP+LSTP** CG*Y
Sbjct: 101 ISLIGSTLPILSI*TGLPALSTP**PCG*Y 12
>gb|CX646677.1|CX646677 COLD1_10_G07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_10_G07_A029 5', mRNA sequence
Length = 835
Score = 162 bits (348), Expect = 1e-038
Identities = 67/142 (47%), Positives = 94/142 (66%)
Frame = +1 / +3
Query: 568 EEFDYTELDEVTEYYPQFYHGVDKEGRPVYIELVGKVDANKLIQVTTLDRYVKYHVKEFE 747
E F + E V E YP F+H +DK GRPVYIE +G++ +L++VTTLDR ++YHVKE+E
Sbjct: 405 ETFQFPERKRVKELYPHFHHKMDKFGRPVYIERLGQLQLEELLKVTTLDRMLQYHVKEWE 584
Query: 748 KCFQMKFPACTIAAKKHIDSSTTILDVQGVGFKNFSKSARELITRLQKIDSDNYPETLCR 927
KFPAC+ A + I+ S TILD++GV K+ SK R I ++ K+D D YPE L +
Sbjct: 585 ILIDWKFPACSRKAGRTINQSLTILDLKGVSVKHMSKQVRHFIQKISKMDQDYYPEYLGK 764
Query: 928 MYIINAGQGFKMLWSTIKSFLD 993
M I+N+ + +WS IK +LD
Sbjct: 765 MIIVNSPTTXQAIWSIIKPWLD 830
>gb|BX784084.1|BX784084 BX784084 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 128G11 similar to
Phosphatidylinositol/phosphatidylcholine transfer
protein, mRNA sequence
Length = 606
Score = 145 bits (312), Expect = 1e-033
Identities = 60/126 (47%), Positives = 84/126 (66%)
Frame = +1 / +1
Query: 568 EEFDYTELDEVTEYYPQFYHGVDKEGRPVYIELVGKVDANKLIQVTTLDRYVKYHVKEFE 747
E F + E V E YP F+H +DK GRPVYIE +G++ ++L++VTTLDR ++YHVKE+E
Sbjct: 223 ETFQFPERKRVKELYPHFHHKIDKFGRPVYIERLGQLQLDELLKVTTLDRMLQYHVKEWE 402
Query: 748 KCFQMKFPACTIAAKKHIDSSTTILDVQGVGFKNFSKSARELITRLQKIDSDNYPETLCR 927
KFPAC+ A + I+ S TILD+ GV K+ SK R I ++ +D D YPE L +
Sbjct: 403 ILIDWKFPACSRKAGRTINQSLTILDLXGVTVKHMSKQVRHFIQKISXMDQDYYPEYLGK 582
Query: 928 MYIINA 945
M I+N+
Sbjct: 583 MIIVNS 600
>gb|CF396931.1|CF396931 RTDS2_25_H03.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_25_H03_A021 3', mRNA sequence
Length = 699
Score = 138 bits (295), Expect = 2e-031
Identities = 54/104 (51%), Positives = 68/104 (65%)
Frame = +1 / +3
Query: 835 VGFKNFSKSARELITRLQKIDSDNYPETLCRMYIINAGQGFKMLWSTIKSFLDPKTASKI 1014
V K+ SK R LI ++ K+D D YPE L +M I+N+ FK +WS IK +LD +T KI
Sbjct: 3 VSVKHMSKQVRHLIQKISKMDQDYYPEYLGKMIIVNSPTTFKAIWSIIKPWLDKRTQKKI 182
Query: 1015 HVLGNKYQHKLLEIIDECELPEFLGGKCNCIEGCQRSDKGPWKD 1146
V G+ Y HKLLE++D LPEFLGG C C GC+ SD GPW D
Sbjct: 183 EVHGSNYAHKLLELVDAENLPEFLGGSCKCPGGCENSDAGPWND 314
>gb|BE123664.1|BE123664 NXNV_151_A06_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_151_A06 5' similar to Arabidopsis thaliana sequence
At2g18180 putative
phosphatidylinositol/phophatidylcholine transfer protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 209
Score = 124 bits (266), Expect = 2e-027
Identities = 48/68 (70%), Positives = 56/68 (82%)
Frame = +1 / +1
Query: 901 DNYPETLCRMYIINAGQGFKMLWSTIKSFLDPKTASKIHVLGNKYQHKLLEIIDECELPE 1080
DNYPETLC+M+IINAG GF++LW+TIKSFLDPKT +KIHVLGNKYQ KL +ID + E
Sbjct: 1 DNYPETLCQMFIINAGAGFRLLWNTIKSFLDPKTTAKIHVLGNKYQXKLXXVIDASQXXE 180
Query: 1081 FLGGKCNC 1104
FLGG C
Sbjct: 181 FLGGNXVC 204
>gb|CF475651.1|CF475651 RTWW2_11_E08.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda
cDNA clone RTWW2_11_E08_A021 5', mRNA sequence
Length = 740
Score = 115 bits (245), Expect = 2e-024
Identities = 49/95 (51%), Positives = 71/95 (74%)
Frame = +1 / +3
Query: 1735 YTEKDVLSSMLRRLGELEGRVQVLETKPSEMPFEKEELLNAAVRRVDALEAELISTKKAL 1914
+T KDVL S+L+RL ELE +V + KP +MP EKEELLNAA R+ ALE EL +TKKAL
Sbjct: 354 FTAKDVLPSVLKRLQELEDKVNEVSAKPPQMPEEKEELLNAATSRIHALETELEATKKAL 533
Query: 1915 YDALMRQDELLAYIDRQELIKFRKKKFCF*DLTME 2019
+AL +Q+EL+ +++ + ++FRK++FC+* + E
Sbjct: 534 KEALAKQEELIESMEKMKELQFRKRRFCW*SIFSE 638
>gb|DR742577.1|DR742577 RTCU1_5_D08.b2_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_5_D08_A029 3', mRNA sequence
Length = 799
Score = 114 bits (243), Expect = 3e-024
Identities = 49/95 (51%), Positives = 71/95 (74%)
Frame = +1 / +3
Query: 1735 YTEKDVLSSMLRRLGELEGRVQVLETKPSEMPFEKEELLNAAVRRVDALEAELISTKKAL 1914
+T KDVL S+L+RL ELE +V + KP +MP EKEELLNAA R+ ALE EL +TKKAL
Sbjct: 156 FTAKDVLPSVLKRLQELEDKVNEVSAKPPQMPEEKEELLNAATCRIHALETELEATKKAL 335
Query: 1915 YDALMRQDELLAYIDRQELIKFRKKKFCF*DLTME 2019
+AL +Q+EL+ +++ + ++FRK++FC+* + E
Sbjct: 336 KEALAKQEELIESMEKMKELQFRKRRFCW*SIFSE 440
>gb|DR097746.1|DR097746 STRR1_36_E12.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_36_E12_A033 5', mRNA sequence
Length = 748
Score = 111 bits (237), Expect = 2e-023
Identities = 47/95 (49%), Positives = 70/95 (73%)
Frame = +1 / +1
Query: 1735 YTEKDVLSSMLRRLGELEGRVQVLETKPSEMPFEKEELLNAAVRRVDALEAELISTKKAL 1914
+T KDVL S+L+RL ELE +V + KP +MP +KEELLNAA R+ ALE EL +T KAL
Sbjct: 112 FTAKDVLPSVLKRLQELEDKVNEVSAKPPQMPEQKEELLNAATSRIHALETELEATNKAL 291
Query: 1915 YDALMRQDELLAYIDRQELIKFRKKKFCF*DLTME 2019
+AL +Q+EL+ +++ + ++FRK++FC+* + E
Sbjct: 292 KEALAKQEELIESMEKMKELQFRKRRFCW*SIFSE 396
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,212,523,054
Number of Sequences: 355925
Number of extensions: 18446560
Number of successful extensions: 86547
Number of sequences better than 1.0e-020: 28
length of database: 72,425,745
effective HSP length: 55
effective length of database: 52,849,870
effective search space used: 38580405100
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)