TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L46398.2.1
(1263 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U42400.1|PRU42400 Pinus radiata putative MADS-box family... 166 2e-080
emb|Y09611.1|PRMADS1 P.resinosa mRNA for MADS-box protein 167 5e-080
gb|U76726.1|PRU76726 Pinus radiata MADS-box protein (PrMADS... 288 1e-078
gb|AW010398.1|AW010398 ST06D02 Pine TriplEx shoot tip libra... 267 1e-070
gb|BQ290846.1|BQ290846 NXRV050_D03_F NXRV (Nsf Xylem Root w... 261 8e-069
gb|U42399.1|PRU42399 Pinus radiata putative MADS-box family... 229 3e-059
gb|AF006210.1|AF006210 Pinus resinosa MADS box transcriptio... 215 5e-055
gb|AF023615.1|AF023615 Pinus radiata MADS box protein mRNA,... 214 1e-054
gb|CF665739.1|CF665739 RTCNT1_18_D05.b1_A029 Root control P... 134 4e-050
gb|DR060889.1|DR060889 RTNIT1_30_D12.g1_A029 Roots minus ni... 199 5e-050
gb|DR058453.1|DR058453 RTNIT1_11_H04.g1_A029 Roots minus ni... 195 6e-049
gb|CX650850.1|CX650850 COLD1_48_B09.g1_A029 Root cold Pinus... 192 6e-048
gb|U90345.1|PRU90345 Pinus radiata putative MADS box transc... 191 1e-047
gb|CO170901.1|CO170901 NDL1_17_E10.g1_A029 Needles control ... 190 1e-047
gb|DR012819.1|DR012819 HEAT1_15_E08.b1_A029 Root at 37 C fo... 190 1e-047
gb|BQ654531.1|BQ654531 NXRV081_H04_F NXRV (Nsf Xylem Root w... 164 2e-047
gb|DR167232.1|DR167232 RTPHOS1_17_B11.g1_A029 Roots minus p... 129 4e-047
gb|DR069454.1|DR069454 RTDK1_7_H04.b1_A029 Roots, dark Pinu... 188 7e-047
gb|U90346.1|PRU90346 Pinus radiata putative MADS box transc... 188 7e-047
gb|CO169756.1|CO169756 NDL1_9_A05.g1_A029 Needles control P... 184 9e-046
gb|CO364965.1|CO364965 RTK1_22_G09.g1_A029 Roots minus pota... 127 1e-045
gb|CO363306.1|CO363306 RTK1_8_H10.g1_A029 Roots minus potas... 183 2e-045
gb|BX252374.1|BX252374 BX252374 Pinus pinaster differenciat... 182 3e-045
gb|DR090702.1|DR090702 RTAL1_16_G11.g1_A029 Roots plus adde... 127 4e-045
gb|CO364847.1|CO364847 RTK1_22_D10.b1_A029 Roots minus pota... 114 6e-045
gb|CV031753.1|CV031753 RTNACL1_3_B05.g1_A029 Roots plus add... 114 6e-045
gb|DR058437.1|DR058437 RTNIT1_11_F11.g1_A029 Roots minus ni... 114 6e-045
gb|CF392697.1|CF392697 RTDR3_5_H09.g1_A022 Loblolly pine ro... 133 6e-045
gb|CF401468.1|CF401468 RTWW1_12_E09.g1_A015 Well-watered lo... 132 6e-045
gb|CX645838.1|CX645838 COLD1_5_D01.g1_A029 Root cold Pinus ... 182 6e-045
gb|DR177222.1|DR177222 RTMNUT1_3_H10.g1_A029 Roots minus mi... 182 6e-045
gb|CX650456.1|CX650456 COLD1_45_F12.g1_A029 Root cold Pinus... 133 2e-044
gb|DR079072.1|DR079072 RTFEPL1_8_G11.g1_A029 Roots plus add... 127 2e-044
gb|DR109660.1|DR109660 RTS1_3_G12.g1_A029 Roots minus sulfu... 112 2e-044
gb|CO201105.1|CO201105 RTCNT2_3_D12.g1_A029 Root control 2 ... 114 2e-044
gb|CX645252.1|CX645252 COLD1_1_H11.b1_A029 Root cold Pinus ... 112 7e-044
gb|CF670172.1|CF670172 RTCNT1_48_B11.g1_A029 Root control P... 114 7e-044
gb|U90344.1|PRU90344 Pinus radiata putative MADS box transc... 120 5e-043
gb|DR384822.1|DR384822 RTHG1_4_G03.g1_A029 Roots plus added... 120 5e-043
gb|CO197079.1|CO197079 GEO1_3_F06.g1_A029 Root gravitropism... 175 5e-043
gb|CF475501.1|CF475501 RTWW2_12_G12.g1_A021 Well-watered lo... 120 1e-042
gb|DR178004.1|DR178004 RTMNUT1_8_E05.g1_A029 Roots minus mi... 114 2e-042
gb|CO163263.1|CO163263 FLD1_40_B04.g1_A029 Root flooded Pin... 127 2e-042
gb|DR072089.1|DR072089 RTDK1_24_B10.b1_A029 Roots, dark Pin... 171 9e-042
gb|DR178023.1|DR178023 RTMNUT1_8_F12.g1_A029 Roots minus mi... 171 9e-042
gb|U90347.1|PRU90347 Pinus radiata putative MADS box transc... 171 1e-041
gb|CF476348.1|CF476348 RTWW2_22_G12.g1_A021 Well-watered lo... 111 2e-041
gb|CF394057.1|CF394057 RTDS2_3_D04.b1_A021 Drought-stressed... 114 2e-041
gb|CF477439.1|CF477439 RTWW3_7_F06.g1_A022 Well-watered lob... 133 3e-041
gb|CO367965.1|CO367965 RTK1_37_F12.g1_A029 Roots minus pota... 169 3e-041
gb|CO157702.1|CO157702 FLD1_1_B06.g1_A029 Root flooded Pinu... 168 6e-041
gb|DR090622.1|DR090622 RTAL1_16_G11.b1_A029 Roots plus adde... 108 6e-040
gb|CO175129.1|CO175129 NDL1_48_D06.g1_A029 Needles control ... 108 6e-040
gb|DR168055.1|DR168055 RTPHOS1_22_H02.g1_A029 Roots minus p... 165 8e-040
gb|CO365540.1|CO365540 RTK1_17_D10.g1_A029 Roots minus pota... 129 2e-039
gb|CO200411.1|CO200411 GEO2_7_G03.b1_A032 Root gravitropism... 114 4e-037
gb|CX713558.1|CX713558 RTPQ1_10_E02.g1_A032 Roots treated w... 127 5e-037
gb|DR051801.1|DR051801 RTBOR1_32_A11.g1_A029 Roots plus add... 112 1e-036
gb|DR051726.1|DR051726 RTBOR1_32_A11.b1_A029 Roots plus add... 112 1e-036
gb|AW010611.1|AW010611 ST08G08 Pine TriplEx shoot tip libra... 150 1e-035
gb|CV035951.1|CV035951 RTNACL1_43_D02.g1_A029 Roots plus ad... 101 5e-035
gb|DR112977.1|DR112977 RTS1_32_C04.b1_A029 Roots minus sulf... 134 1e-034
gb|BG318417.1|BG318417 NXPV_013_D07_F NXPV (Nsf Xylem Plani... 120 3e-034
gb|CO200495.1|CO200495 GEO2_7_G03.g1_A032 Root gravitropism... 114 5e-034
gb|BX249249.1|BX249249 BX249249 Pinus pinaster differenciat... 120 2e-033
gb|DR069761.1|DR069761 RTDK1_9_F10.b1_A029 Roots, dark Pinu... 99 2e-033
gb|DR742217.1|DR742217 RTCU1_2_C05.g1_A029 Roots plus added... 99 2e-033
gb|CX715901.1|CX715901 RTPQ1_37_G08.g1_A032 Roots treated w... 99 2e-033
gb|AL750172.1|AL750172 AL750172 AS Pinus pinaster cDNA clon... 101 3e-033
dbj|DD014347.1| Compositions and Methods for the Modificati... 108 4e-033
gb|CF668263.1|CF668263 RTCNT1_35_A03.g1_A029 Root control P... 114 4e-033
gb|DR177921.1|DR177921 RTMNUT1_8_E05.b1_A029 Roots minus mi... 86 6e-033
gb|CF394132.1|CF394132 RTDS2_3_D04.g1_A021 Drought-stressed... 86 6e-033
gb|DR098149.1|DR098149 STRR1_39_A06.g1_A033 Stem Response R... 99 6e-033
gb|CX713480.1|CX713480 RTPQ1_9_E04.g1_A032 Roots treated wi... 127 8e-033
gb|DR016118.1|DR016118 STRS1_7_G02.g1_A034 Shoot tip pitch ... 85 2e-032
gb|BX249866.1|BX249866 BX249866 Pinus pinaster differenciat... 96 2e-032
gb|DR169156.1|DR169156 RTPHOS1_30_A07.g1_A029 Roots minus p... 103 3e-032
gb|DR014329.1|DR014329 HEAT1_24_G07.g1_A029 Root at 37 C fo... 102 5e-032
gb|CF399403.1|CF399403 RTDS3_28_D02.g1_A022 Drought-stresse... 138 6e-032
gb|AF120097.1|AF120097 Pinus radiata DEF/GLO-like protein (... 103 7e-032
gb|CF388137.1|CF388137 RTDR2_1_D05.b1_A021 Loblolly pine ro... 138 8e-032
gb|CF389852.1|CF389852 RTDR2_11_B08.b1_A021 Loblolly pine r... 138 8e-032
gb|CF389963.1|CF389963 RTDR2_11_B08.g1_A021 Loblolly pine r... 138 8e-032
gb|CO161503.1|CO161503 FLD1_29_F09.b1_A029 Root flooded Pin... 138 8e-032
gb|CO161575.1|CO161575 FLD1_29_F09.g1_A029 Root flooded Pin... 138 8e-032
gb|CX713803.1|CX713803 RTPQ1_13_F12.b1_A032 Roots treated w... 138 8e-032
gb|DR013883.1|DR013883 HEAT1_22_D05.b1_A029 Root at 37 C fo... 138 8e-032
gb|AA556486.1|AA556486 341 Loblolly pine C Pinus taeda cDNA... 118 3e-031
gb|BQ695742.1|BQ695742 NXPV_032_B10_F NXPV (Nsf Xylem Plani... 103 5e-031
gb|CX650380.1|CX650380 COLD1_45_F12.b1_A029 Root cold Pinus... 84 1e-030
gb|DR072321.1|DR072321 RTDK1_25_B07.g1_A029 Roots, dark Pin... 133 3e-030
gb|BG040082.1|BG040082 NXSI_106_C09_F NXSI (Nsf Xylem Side ... 101 6e-030
gb|AW587800.1|AW587800 ST67B08 Pine TriplEx shoot tip libra... 131 9e-030
gb|CO201026.1|CO201026 RTCNT2_3_D12.b1_A029 Root control 2 ... 86 2e-029
gb|BG318835.1|BG318835 NXPV_020_D12_F NXPV (Nsf Xylem Plani... 127 2e-028
gb|BQ696809.1|BQ696809 NXPV_045_E02_F NXPV (Nsf Xylem Plani... 127 2e-028
gb|CV033324.1|CV033324 RTNACL1_33_G03.g1_A029 Roots plus ad... 127 2e-028
gb|AW290406.1|AW290406 NXNV019H03F Nsf Xylem Normal wood Ve... 124 1e-027
gb|CD027064.1|CD027064 NXNV019H03 Nsf Xylem Normal wood Ver... 124 1e-027
gb|CF476374.1|CF476374 RTWW2_22_E12.g1_A021 Well-watered lo... 114 4e-027
gb|AL749789.1|AL749789 AL749789 AS Pinus pinaster cDNA clon... 121 1e-026
gb|U90348.1|PRU90348 Pinus radiata putative MADS box transc... 121 1e-026
gb|BG625803.1|BG625803 NXPV_066_C06_F NXPV (Nsf Xylem Plani... 120 2e-026
gb|AW226013.1|AW226013 ST76C10 Pine TriplEx shoot tip libra... 94 2e-026
gb|CF385094.1|CF385094 RTDR1_1_A12.g1_A015 Loblolly pine ro... 68 7e-026
gb|AW981881.1|AW981881 PC19G08 Pine TriplEx pollen cone lib... 117 1e-025
gb|CO170829.1|CO170829 NDL1_17_E10.b1_A029 Needles control ... 117 2e-025
gb|DR079733.1|DR079733 RTFEPL1_17_F02.b1_A029 Roots plus ad... 74 4e-025
gb|BE451798.1|BE451798 NXCI_002_D03_F NXCI (Nsf Xylem Compr... 116 4e-025
gb|BF517018.1|BF517018 NXSI_008_C03_F NXSI (Nsf Xylem Side ... 116 4e-025
gb|U90349.1|PRU90349 Pinus radiata putative MADS box transc... 116 4e-025
gb|CX646655.1|CX646655 COLD1_10_E03.g1_A029 Root cold Pinus... 85 1e-024
gb|CF671711.1|CF671711 RTCNT1_58_F11.g1_A029 Root control P... 66 1e-024
gb|DR167777.1|DR167777 RTPHOS1_21_A12.b1_A029 Roots minus p... 114 1e-024
gb|BF220652.1|BF220652 NXCI_151_A10_F NXCI (Nsf Xylem Compr... 112 4e-024
gb|CX650775.1|CX650775 COLD1_48_B09.b1_A029 Root cold Pinus... 112 6e-024
gb|DR081124.1|DR081124 RTFEPL1_27_C11.g1_A029 Roots plus ad... 112 6e-024
gb|AW754659.1|AW754659 PC04G10 Pine TriplEx pollen cone lib... 111 1e-023
gb|BE187247.1|BE187247 NXNV_76_C05_F Nsf Xylem Normal wood ... 110 2e-023
gb|BI643995.1|BI643995 NXPV_133_H06_F NXPV (Nsf Xylem Plani... 110 3e-023
gb|CO363222.1|CO363222 RTK1_8_H10.b1_A029 Roots minus potas... 109 5e-023
gb|CF398147.1|CF398147 RTDS3_21_G07.b1_A022 Drought-stresse... 69 1e-022
gb|CF388230.1|CF388230 RTDR2_1_D05.g1_A021 Loblolly pine ro... 107 2e-022
gb|BG039483.1|BG039483 NXSI_099_F04_F NXSI (Nsf Xylem Side ... 105 9e-022
gb|BM134188.1|BM134188 NXLV_017_H01_F NXLV (Nsf Xylem Late ... 105 9e-022
gb|CD028456.1|CD028456 NXSI_119_C03_F NXSI (Nsf Xylem Side ... 105 9e-022
gb|CF389480.1|CF389480 RTDR2_7_A07.g1_A021 Loblolly pine ro... 105 9e-022
gb|CF671036.1|CF671036 RTCNT1_54_F06.b1_A029 Root control P... 105 9e-022
gb|CF671146.1|CF671146 RTCNT1_55_C04.b1_A029 Root control P... 105 9e-022
gb|CV034382.1|CV034382 RTNACL1_40_C07.g1_A029 Roots plus ad... 105 9e-022
gb|CX650315.1|CX650315 COLD1_44_H01.g1_A029 Root cold Pinus... 105 9e-022
gb|DR112834.1|DR112834 RTS1_31_A11.b1_A029 Roots minus sulf... 105 9e-022
gb|DR742675.1|DR742675 RTCU1_5_F06.g2_A029 Roots plus added... 105 9e-022
gb|CX645319.1|CX645319 COLD1_1_H11.g1_A029 Root cold Pinus ... 86 1e-021
gb|BF186169.1|BF186169 NXCI_133_G11_F NXCI (Nsf Xylem Compr... 104 1e-021
gb|BF609658.1|BF609658 NXSI_047_G05_F NXSI (Nsf Xylem Side ... 104 1e-021
gb|CF386447.1|CF386447 RTDR1_14_B10.g1_A015 Loblolly pine r... 104 1e-021
gb|CO361066.1|CO361066 NDL2_2_B04.g1_A029 Needles control 2... 104 1e-021
gb|AA739846.1|AA739846 611 PtIFG2 Pinus taeda cDNA clone 89... 104 2e-021
gb|BF777427.1|BF777427 NXSI_071_E03_F NXSI (Nsf Xylem Side ... 104 2e-021
gb|BG318888.1|BG318888 NXPV_021_A10_F NXPV (Nsf Xylem Plani... 104 2e-021
gb|CF390951.1|CF390951 RTDR3_2_E09.g1_A022 Loblolly pine ro... 102 4e-021
gb|BQ655796.1|BQ655796 NXRV099_D04_F NXRV (Nsf Xylem Root w... 57 5e-021
gb|AI725123.1|AI725123 1022 PtIFG2 Pinus taeda cDNA clone 8... 102 6e-021
gb|AW985380.1|AW985380 NXNV_134_G01_F Nsf Xylem Normal wood... 101 8e-021
gb|BE644116.1|BE644116 NXCI_054_F11_F NXCI (Nsf Xylem Compr... 101 8e-021
gb|BF778396.1|BF778396 NXSI_082_G07_F NXSI (Nsf Xylem Side ... 101 8e-021
gb|CV033251.1|CV033251 RTNACL1_33_G03.b1_A029 Roots plus ad... 101 8e-021
gb|CX649779.1|CX649779 COLD1_41_A09.g1_A029 Root cold Pinus... 101 8e-021
>gb|U42400.1|PRU42400 Pinus radiata putative MADS-box family transcription factor
(PrMADS2) mRNA, complete cds
Length = 1064
Score = 166 bits (357), Expect(3) = 2e-080
Identities = 72/82 (87%), Positives = 74/82 (90%)
Frame = +1 / +2
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFS RGKLYEFGSA
Sbjct: 95 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 274
Query: 382 GVTKTLERYQHCCYNAQDSNNS 447
G+ KTLERYQ C Y QD+ S
Sbjct: 275 GMLKTLERYQKCSYVLQDATVS 340
Score = 140 bits (301), Expect(3) = 2e-080
Identities = 58/98 (59%), Positives = 77/98 (78%)
Frame = +1 / +2
Query: 457 ESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQV 636
E+Q+W+QE+ KL+A+ E LQR+QRHLLGEDLGPLS+KELQQLE+QLE AL+ R RKTQV
Sbjct: 347 EAQNWHQEVGKLKARVELLQRSQRHLLGEDLGPLSIKELQQLERQLEVALTHVRSRKTQV 526
Query: 637 MMEQVEELRRTERHLGEMNRQLKHKLEAEGCSNYTTLQ 750
M+E ++ELRR ER L E+N+ L+ KL+ + +Q
Sbjct: 527 MLEMMDELRRKERILQEVNKSLRKKLQEAEGQAFNAMQ 640
Score = 89.5 bits (189), Expect(3) = 6e-026
Identities = 41/70 (58%), Positives = 45/70 (64%)
Frame = -2 / -3
Query: 410 *YLSKVLVTPALPNS*SLPRPEKMMXXXXXXXXXXXXXAFLSRPLRRLEKVTWRLILFSI 231
*Y S+VL PALPNS*S P E ++ AF SRP RR E VTWRLILFSI
Sbjct: 303 *YRSRVLSIPALPNS*SFPLLENIISATSASHNTESSYAFFSRPFRRFENVTWRLILFSI 124
Query: 230 RFSSTRPLPM 201
RFSSTRP P+
Sbjct: 123 RFSSTRPRPI 94
Score = 45.5 bits (93), Expect(3) = 6e-026
Identities = 23/53 (43%), Positives = 26/53 (49%)
Frame = -2 / -3
Query: 635 TCVFLCLACDKAHXXXXXXXXXXFTLSGPRSSPSKCL*VRCKASNFALSFDIS 477
T VFL L C A L GPRSSP+KCL RCK+S A + S
Sbjct: 525 T*VFLDLTCVSATSS*RSSCCSSLILKGPRSSPNKCLCDRCKSSTLAFNLPTS 367
Score = 32.7 bits (65), Expect(3) = 2e-080
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1 / +2
Query: 832 SVAMDCEPTLQIGYPH 879
S A+DCEPTLQIGY +
Sbjct: 704 SNAVDCEPTLQIGYQY 751
Score = 27.2 bits (53), Expect(3) = 6e-026
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -2 / -3
Query: 872 YPICRVGSQSIA 837
YPIC VGSQS A
Sbjct: 744 YPICNVGSQSTA 709
>emb|Y09611.1|PRMADS1 P.resinosa mRNA for MADS-box protein
Length = 1073
Score = 167 bits (359), Expect(3) = 5e-080
Identities = 73/86 (84%), Positives = 76/86 (88%)
Frame = +1 / +1
Query: 190 EEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYE 369
+E MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFS RGKLYE
Sbjct: 64 KEERMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYE 243
Query: 370 FGSAGVTKTLERYQHCCYNAQDSNNS 447
FGSAG+ KTLERYQ C Y QD+ S
Sbjct: 244 FGSAGMLKTLERYQKCSYVLQDATVS 321
Score = 140 bits (301), Expect(3) = 5e-080
Identities = 58/98 (59%), Positives = 77/98 (78%)
Frame = +1 / +1
Query: 457 ESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQV 636
E+Q+W+QE+ KL+A+ E LQR+QRHLLGEDLGPLS+KELQQLE+QLE AL+ R RKTQV
Sbjct: 328 EAQNWHQEVGKLKARVELLQRSQRHLLGEDLGPLSIKELQQLERQLEVALTHVRSRKTQV 507
Query: 637 MMEQVEELRRTERHLGEMNRQLKHKLEAEGCSNYTTLQ 750
M+E ++ELRR ER L E+N+ L+ KL+ + +Q
Sbjct: 508 MLEMMDELRRKERILQEVNKSLRKKLQEAEGQAFNAMQ 621
Score = 83.5 bits (176), Expect(3) = 6e-024
Identities = 41/73 (56%), Positives = 46/73 (63%)
Frame = -2 / -1
Query: 410 *YLSKVLVTPALPNS*SLPRPEKMMXXXXXXXXXXXXXAFLSRPLRRLEKVTWRLILFSI 231
*Y S+VL PALPNS*S P E ++ AF SRP RR E VT RLILFSI
Sbjct: 284 *YRSRVLSIPALPNS*SFPLLENIISATSASHNTESSYAFFSRPFRRFENVT*RLILFSI 105
Query: 230 RFSSTRPLPMPTS 192
RFSSTRP P+ +S
Sbjct: 104 RFSSTRPRPILSS 66
Score = 45.1 bits (92), Expect(3) = 6e-024
Identities = 23/53 (43%), Positives = 26/53 (49%)
Frame = -2 / -1
Query: 635 TCVFLCLACDKAHXXXXXXXXXXFTLSGPRSSPSKCL*VRCKASNFALSFDIS 477
T VFL L C A L GPRSSP+KCL RCK+S A + S
Sbjct: 506 T*VFLDLTCVSATSS*RSSCCSSLILRGPRSSPNKCLCDRCKSSTLAFNLPTS 348
Score = 30.4 bits (60), Expect(3) = 5e-080
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1 / +1
Query: 832 SVAMDCEPTLQIGYPH 879
S A+DCEPTLQ GY +
Sbjct: 685 SNAVDCEPTLQTGYQY 732
Score = 26.7 bits (52), Expect(3) = 6e-024
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2 / -1
Query: 872 YPICRVGSQSIA 837
YP+C VGSQS A
Sbjct: 725 YPVCNVGSQSTA 690
>gb|U76726.1|PRU76726 Pinus radiata MADS-box protein (PrMADS3) mRNA, complete cds
Length = 1130
Score = 288 bits (623), Expect(3) = 1e-078
Identities = 122/171 (71%), Positives = 146/171 (85%)
Frame = +1 / +1
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRGRV+L+RIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFS RGKLYEF S+
Sbjct: 1 MGRGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFASS 180
Query: 382 GVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLS 561
+ KTLERY+ C Y QD+ + E+Q+W+QE++KL+ K E LQR+QRHLLGEDLGPL+
Sbjct: 181 SMNKTLERYEKCSYAMQDTTGVSDREAQNWHQEVTKLKGKVELLQRSQRHLLGEDLGPLN 360
Query: 562 VKELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKL 714
VKELQQLE+QLE AL+ R RKTQVM++Q+EELR+ ER L E+N+ L+ KL
Sbjct: 361 VKELQQLERQLEVALTHLRSRKTQVMLDQIEELRQRERLLHEVNKSLQKKL 513
Score = 66.6 bits (139), Expect(2) = 9e-022
Identities = 34/68 (50%), Positives = 36/68 (52%)
Frame = -2 / -1
Query: 407 YLSKVLVTPALPNS*SLPRPEKMMXXXXXXXXXXXXXAFLSRPLRRLEKVTWRLILFSIR 228
YLS VL L NS*S P EK++ AF S P RR E VT R ILFSIR
Sbjct: 206 YLSNVLFMLELANS*SFPLVEKIISATSASHSTDSSYAFFSSPFRRFENVTCRFILFSIR 27
Query: 227 FSSTRPLP 204
S TRP P
Sbjct: 26 LS*TRPRP 3
Score = 57.9 bits (120), Expect(2) = 9e-022
Identities = 25/56 (44%), Positives = 31/56 (55%)
Frame = -2 / -1
Query: 635 TCVFLCLACDKAHXXXXXXXXXXFTLSGPRSSPSKCL*VRCKASNFALSFDISWYQ 468
TCVFL L C +A T +GPRSSP+KCL RC++S +F SW Q
Sbjct: 434 TCVFLDLRCVRATSS*RSSCCSSLTFNGPRSSPNKCLCDRCRSSTLPFNFVTSWCQ 267
Score = 29.9 bits (59), Expect(3) = 1e-078
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1 / +1
Query: 841 MDCEPTLQIGY 873
+DCEPTLQIGY
Sbjct: 664 VDCEPTLQIGY 696
Score = 21.7 bits (41), Expect(3) = 1e-078
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +2 / +2
Query: 794 MTAPPIKCIRLPTQLLWTVNP 856
M + + I++ +WTVNP
Sbjct: 617 MLSHTLNKIQIQASTMWTVNP 679
>gb|AW010398.1|AW010398 ST06D02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST06D02, mRNA sequence
Length = 647
Score = 267 bits (577), Expect = 1e-070
Identities = 112/163 (68%), Positives = 137/163 (84%)
Frame = +1 / +3
Query: 193 EVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEF 372
++ MGRGRV+L+RIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFS RGKLYEF
Sbjct: 15 DLAMGRGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEF 194
Query: 373 GSAGVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLG 552
S+ + KTLERY+ C Y QD+ + E+Q+W+QE++KL+ K E LQR+QRHLLGEDLG
Sbjct: 195 ASSSMNKTLERYEKCSYAMQDTTGVSDREAQNWHQEVTKLKGKVELLQRSQRHLLGEDLG 374
Query: 553 PLSVKELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHL 681
PL+VKELQ+LE+QLE AL+ + RKT VM++ +EEL + ER L
Sbjct: 375 PLNVKELQRLERQLEGALTHLKSRKTXVMLDXIEELXQXERXL 503
Score = 69.8 bits (146), Expect(2) = 7e-023
Identities = 36/72 (50%), Positives = 39/72 (54%)
Frame = -2 / -2
Query: 407 YLSKVLVTPALPNS*SLPRPEKMMXXXXXXXXXXXXXAFLSRPLRRLEKVTWRLILFSIR 228
YLS VL L NS*S P EK++ AF S P RRLE VT R ILFSIR
Sbjct: 229 YLSNVLFMLELANS*SFPLVEKIISATSASHSTDSSYAFFSSPFRRLENVTCRFILFSIR 50
Query: 227 FSSTRPLPMPTS 192
S TRP P+ S
Sbjct: 49 LS*TRPRPIARS 14
Score = 58.3 bits (121), Expect(2) = 7e-023
Identities = 25/56 (44%), Positives = 31/56 (55%)
Frame = -2 / -2
Query: 635 TCVFLCLACDKAHXXXXXXXXXXFTLSGPRSSPSKCL*VRCKASNFALSFDISWYQ 468
TCVFL L C +A T +GPRSSP+KCL RC++S +F SW Q
Sbjct: 457 TCVFLDLRCVRAPSS*RSSRCSSLTFNGPRSSPNKCLCDRCRSSTLPFNFVTSWCQ 290
>gb|BQ290846.1|BQ290846 NXRV050_D03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV050_D03 5' similar to Arabidopsis thaliana
sequence At5g15800 transcription factor (AGL2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 546
Score = 261 bits (564), Expect = 8e-069
Identities = 110/157 (70%), Positives = 131/157 (83%)
Frame = +1 / +1
Query: 193 EVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEF 372
++ MGRGRV+L+RIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFS RGKLYEF
Sbjct: 76 DLAMGRGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEF 255
Query: 373 GSAGVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLG 552
S+ + KTLERY+ C Y QD+ + E+Q+W+QE++KL+ K E LQR+QRHLLGEDLG
Sbjct: 256 ASSSMNKTLERYEKCSYAMQDTTGVSDREAQNWHQEVTKLKGKVELLQRSQRHLLGEDLG 435
Query: 553 PLSVKELQQLEKQLECALSQARQRKTQVMMEQVEELR 663
PL+VKELQQLE+QLE AL+ R RKT M++ EE R
Sbjct: 436 PLNVKELQQLERQLEVALTHLRSRKTXXMLDXXEEXR 546
Score = 69.8 bits (146), Expect(2) = 8e-021
Identities = 36/72 (50%), Positives = 39/72 (54%)
Frame = -2 / -2
Query: 407 YLSKVLVTPALPNS*SLPRPEKMMXXXXXXXXXXXXXAFLSRPLRRLEKVTWRLILFSIR 228
YLS VL L NS*S P EK++ AF S P RRLE VT R ILFSIR
Sbjct: 290 YLSNVLFMLELANS*SFPLVEKIISATSASHSTDSSYAFFSSPFRRLENVTCRFILFSIR 111
Query: 227 FSSTRPLPMPTS 192
S TRP P+ S
Sbjct: 110 LS*TRPRPIARS 75
Score = 51.5 bits (106), Expect(2) = 8e-021
Identities = 23/54 (42%), Positives = 29/54 (53%)
Frame = -2 / -2
Query: 629 VFLCLACDKAHXXXXXXXXXXFTLSGPRSSPSKCL*VRCKASNFALSFDISWYQ 468
VFL L C +A T +GPRSSP+KCL RC++S +F SW Q
Sbjct: 512 VFLDLRCVRATSS*RSSCCSSLTFNGPRSSPNKCLCDRCRSSTLPFNFVTSWCQ 351
>gb|U42399.1|PRU42399 Pinus radiata putative MADS-box family transcription factor
(PrMADS1) mRNA, complete cds
Length = 1007
Score = 229 bits (495), Expect = 3e-059
Identities = 104/172 (60%), Positives = 127/172 (73%)
Frame = +1 / +3
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRG+VELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS RGKLYEF S+
Sbjct: 21 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 200
Query: 382 GVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLS 561
C N +++E Q+ YQ+ +L+A+ E LQR+QR+LLGE+LGPL+
Sbjct: 201 SSMMKTIEKYQKCSYGSLETNCSINEMQNSYQDYLELKARVEVLQRSQRNLLGEELGPLN 380
Query: 562 VKELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKLE 717
KEL+QLE QLE +L Q R KTQ M +Q+ L+ E+ L E NR+L+ KLE
Sbjct: 381 SKELEQLEHQLENSLKQIRSAKTQFMFDQLAHLQHKEQMLVEANRELRKKLE 536
>gb|AF006210.1|AF006210 Pinus resinosa MADS box transcription factor mRNA, complete cds
Length = 1726
Score = 215 bits (464), Expect = 5e-055
Identities = 90/171 (52%), Positives = 123/171 (71%)
Frame = +1 / +1
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRG++E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYEF +
Sbjct: 475 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEFANH 654
Query: 382 GVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLS 561
V +T+ERY+ C + + S SQ W QE KLR + E LQ RHL+G+ L L+
Sbjct: 655 SVKRTIERYKKTCVDNNHGGAISESNSQYWQQEAGKLRQQIEILQNANRHLMGDGLTALN 834
Query: 562 VKELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKL 714
+KEL+QLE +LE +S+ R +K ++++E+++ ++R E L + N L+ K+
Sbjct: 835 IKELKQLEVRLEKGISRVRSKKNEMLLEEIDIMQRREHILIQENEILRSKI 987
>gb|AF023615.1|AF023615 Pinus radiata MADS box protein mRNA, complete cds
Length = 922
Score = 214 bits (461), Expect = 1e-054
Identities = 89/171 (52%), Positives = 123/171 (71%)
Frame = +1 / +2
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRG++E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYEF +
Sbjct: 14 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEFANH 193
Query: 382 GVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLS 561
V +T+ERY+ C + + S SQ W QE KLR + + LQ RHL+G+ L L+
Sbjct: 194 SVKRTIERYKKTCVDNNHGGAISESNSQYWQQEAGKLRQQIDILQNANRHLMGDGLTALN 373
Query: 562 VKELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKL 714
+KEL+QLE +LE +S+ R +K ++++E+++ ++R E L + N L+ K+
Sbjct: 374 IKELKQLEVRLEKGISRVRSKKNEMLLEEIDIMQRREHILIQENEILRSKI 526
>gb|CF665739.1|CF665739 RTCNT1_18_D05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_18_D05_A029 3', mRNA sequence
Length = 665
Score = 134 bits (288), Expect(2) = 4e-050
Identities = 59/90 (65%), Positives = 72/90 (80%)
Frame = +1 / -1
Query: 142 GRPGS*QKRASSDLGSEEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCD 321
G+ GS ++R S+ MGRGRV+L++IENKINRQVTFSKRRNGL KKA ELS+LCD
Sbjct: 551 GKRGSERERESTCSRKGLFEMGRGRVQLRKIENKINRQVTFSKRRNGLKKKAAELSILCD 372
Query: 322 AEVALIIFSGRGKLYEFGSAGVTKTLERYQ 411
AEVALI+FS RGKLYEF S+ + K L+RY+
Sbjct: 371 AEVALIVFSNRGKLYEFASSSMEKILQRYR 282
Score = 84.9 bits (179), Expect(2) = 4e-050
Identities = 38/81 (46%), Positives = 54/81 (66%)
Frame = +1 / -2
Query: 460 SQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQVM 639
+Q E ++L+ KFE+LQR RHLLGED+ L++KELQQLE+QL+ L Q K Q M
Sbjct: 244 TQDSNMEFTQLKEKFESLQRCNRHLLGEDVDGLTMKELQQLEQQLQGGLHQVISXKNQFM 65
Query: 640 MEQVEELRRTERHLGEMNRQL 702
+ +EEL++ E+ L N+ L
Sbjct: 64 FDMIEELQKKEQLLEGENKSL 2
>gb|DR060889.1|DR060889 RTNIT1_30_D12.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_30_D12_A029 5', mRNA sequence
Length = 796
Score = 199 bits (428), Expect = 5e-050
Identities = 82/169 (48%), Positives = 122/169 (72%)
Frame = +1 / +3
Query: 208 RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGV 387
RG+ ++KRIEN +RQVTFSKRRNGLLKKAYELSVLCDAEVAL++FS RGKLYEF + +
Sbjct: 54 RGKTQMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALMVFSPRGKLYEFANPSM 233
Query: 388 TKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVK 567
K LERY+ C ++ ++ + + ++ +E++ + + E L+RTQR +LGE+L ++K
Sbjct: 234 QKMLERYEKCSEGSKTTSIAKEEDPKALKREIANMEERIEILERTQRKMLGEELASCALK 413
Query: 568 ELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKL 714
+L QLE Q+E L R RK+++++ Q+E+L+R ER E N L+ ++
Sbjct: 414 DLNQLESQVERGLRNIRARKSEILVTQIEQLQRKERMFSEENNFLRKRI 560
>gb|DR058453.1|DR058453 RTNIT1_11_H04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_11_H04_A029 5', mRNA sequence
Length = 843
Score = 195 bits (420), Expect = 6e-049
Identities = 81/120 (67%), Positives = 100/120 (83%)
Frame = +1 / -2
Query: 307 SVLCDAEVALIIFSGRGKLYEFGSAGVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMS 486
SVLCDAEVALIIFS RGKLYEF S+ + KTLERY+ C Y QD+ + E+Q+W+QE++
Sbjct: 842 SVLCDAEVALIIFSTRGKLYEFASSSMNKTLERYEKCSYAMQDTTGVSDREAQNWHQEVT 663
Query: 487 KLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQVMMEQVEELRR 666
KL+ K E LQR+QRHLLGEDLGPL+VKELQQLE+QLE AL+ R RKTQVM++Q+EELR+
Sbjct: 662 KLKGKVELLQRSQRHLLGEDLGPLNVKELQQLERQLEVALTHLRSRKTQVMLDQIEELRQ 483
>gb|CX650850.1|CX650850 COLD1_48_B09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_48_B09_A029 5', mRNA sequence
Length = 814
Score = 192 bits (413), Expect = 6e-048
Identities = 80/171 (46%), Positives = 120/171 (70%)
Frame = +1 / +1
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRGR L++IE+ +RQVTFSKRRNGLLKKAYELSVLCD E+ LI+ S RGK++EF S
Sbjct: 82 MGRGRTRLRKIESATSRQVTFSKRRNGLLKKAYELSVLCDVELGLIVLSPRGKVHEFSST 261
Query: 382 GVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLS 561
V K LERY+ C ++ ++ + + ++ +E++ + + E L+RTQR +LGE+L +
Sbjct: 262 CVQKMLERYEKCSEGSKTTSIAKEEDPKALKREIANMEERIEILERTQRKMLGEELASCA 441
Query: 562 VKELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKL 714
+K+L QLE Q+E L R RK+++++ Q+E+L+R ER E N L+ ++
Sbjct: 442 LKDLNQLESQVERGLRNIRARKSEILVTQIEQLQRKERMFSEENNFLRKRI 594
>gb|U90345.1|PRU90345 Pinus radiata putative MADS box transcription factor PrMADS4 mRNA,
complete cds
Length = 1051
Score = 191 bits (411), Expect = 1e-047
Identities = 79/175 (45%), Positives = 123/175 (70%)
Frame = +1 / +3
Query: 190 EEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYE 369
+E MGRGR+ L++IE+ +RQVTFSKR+NGLLKKAYELSVLCD E+ LI+ S RGK++E
Sbjct: 168 KERRMGRGRIRLRKIESATSRQVTFSKRKNGLLKKAYELSVLCDVELGLIVLSPRGKVHE 347
Query: 370 FGSAGVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDL 549
F S + K LERY+ C ++ ++ + + ++ +E++ + + E L+RTQR +LGE+L
Sbjct: 348 FSSTCMQKMLERYEKCSEGSKTTSIAKEEDPKALKREIANMEERIEILERTQRKMLGEEL 527
Query: 550 GPLSVKELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKL 714
++K+L QLE Q+E L R RK+++++ Q+E+L+R ER E N L+ ++
Sbjct: 528 ASCALKDLNQLESQVERGLRNIRARKSEILVTQIEQLQRKERMFSEENNFLRKRI 692
>gb|CO170901.1|CO170901 NDL1_17_E10.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_17_E10_A029 5', mRNA sequence
Length = 699
Score = 190 bits (410), Expect = 1e-047
Identities = 79/171 (46%), Positives = 120/171 (70%)
Frame = +1 / +3
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRGR L++IE+ +RQVTFSKRRNGLLKKAYELSVLCD E+ LI+ S RGK++EF S
Sbjct: 147 MGRGRTRLRKIESATSRQVTFSKRRNGLLKKAYELSVLCDVELGLIVLSPRGKVHEFSST 326
Query: 382 GVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLS 561
+ K LERY+ C ++ ++ + + ++ +E++ + + E L+RTQR +LGE+L +
Sbjct: 327 CMQKMLERYEKCSEGSKTTSIAKEEDPKALKREIANMEERIEILERTQRKMLGEELASCA 506
Query: 562 VKELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKL 714
+K+L QLE Q+E L R RK+++++ Q+E+L+R ER E N L+ ++
Sbjct: 507 LKDLNQLESQVERGLRNIRARKSEILVTQIEQLQRKERMFSEENNFLRKRI 659
>gb|DR012819.1|DR012819 HEAT1_15_E08.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_15_E08_A029 3', mRNA sequence
Length = 734
Score = 190 bits (410), Expect = 1e-047
Identities = 79/171 (46%), Positives = 120/171 (70%)
Frame = +1 / -1
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRGR L++IE+ +RQVTFSKRRNGLLKKAYELSVLCD E+ LI+ S RGK++EF S
Sbjct: 695 MGRGRTRLRKIESATSRQVTFSKRRNGLLKKAYELSVLCDVELGLIVLSPRGKVHEFSST 516
Query: 382 GVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLS 561
+ K LERY+ C ++ ++ + + ++ +E++ + + E L+RTQR +LGE+L +
Sbjct: 515 CMQKMLERYEKCSEGSKTTSIAKEEDPKALKREIANMEERIEILERTQRKMLGEELASCA 336
Query: 562 VKELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKL 714
+K+L QLE Q+E L R RK+++++ Q+E+L+R ER E N L+ ++
Sbjct: 335 LKDLNQLESQVERGLRNIRARKSEILVTQIEQLQRKERMFSEENNFLRKRI 183
>gb|BQ654531.1|BQ654531 NXRV081_H04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV081_H04 5' similar to Arabidopsis thaliana
sequence At5g15800 transcription factor (AGL2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 436
Score = 164 bits (352), Expect(2) = 2e-047
Identities = 68/93 (73%), Positives = 79/93 (84%)
Frame = +1 / +2
Query: 193 EVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEF 372
++ MGRGRV+L+RIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFS RGKLYEF
Sbjct: 53 DLAMGRGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEF 232
Query: 373 GSAGVTKTLERYQHCCYNAQDSNNSALSESQSW 471
S+ + KTLERY+ C Y QD+ + E+Q+W
Sbjct: 233 ASSSMNKTLERYEKCSYAMQDTTGVSDREAQNW 331
Score = 46.4 bits (95), Expect(2) = 2e-047
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +1 / +3
Query: 475 QEMSKLRAKFEALQRTQRHLLGEDLGPLSV 564
QE++KL+ K E LQR+Q HLLGE L PL+V
Sbjct: 336 QEVTKLKGKVELLQRSQTHLLGEXLXPLNV 425
>gb|DR167232.1|DR167232 RTPHOS1_17_B11.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_17_B11_A029 5', mRNA sequence
Length = 798
Score = 129 bits (277), Expect(2) = 4e-047
Identities = 53/70 (75%), Positives = 63/70 (90%)
Frame = +1 / +1
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRGRV+L+RIENKI+RQVTFSKRRNGL+KKA ELS+LCDAEV LI+FS + KLYEF S+
Sbjct: 157 MGRGRVQLRRIENKISRQVTFSKRRNGLMKKAAELSILCDAEVGLIVFSNKDKLYEFASS 336
Query: 382 GVTKTLERYQ 411
+TK LERY+
Sbjct: 337 SMTKILERYR 366
Score = 79.9 bits (168), Expect(2) = 4e-047
Identities = 36/75 (48%), Positives = 51/75 (68%)
Frame = +1 / +1
Query: 478 EMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQVMMEQVEE 657
E++ L+ + + LQR++RHLLGEDL L +LQ LE+QLE AL + KTQ M+ +EE
Sbjct: 421 ELTHLKEEVDRLQRSRRHLLGEDLHQLGATDLQHLEQQLEEALQKVTLTKTQFMLHLIEE 600
Query: 658 LRRTERHLGEMNRQL 702
LRR E+ L +N+ L
Sbjct: 601 LRRKEQLLEGINKSL 645
>gb|DR069454.1|DR069454 RTDK1_7_H04.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_7_H04_A029 3', mRNA sequence
Length = 871
Score = 188 bits (405), Expect = 7e-047
Identities = 78/171 (45%), Positives = 119/171 (69%)
Frame = +1 / +2
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRGR L++IE+ +RQVTFSKRRNGLLKKAYE SVLCD E+ LI+ S RGK++EF S
Sbjct: 5 MGRGRTRLRKIESATSRQVTFSKRRNGLLKKAYEXSVLCDVELGLIVLSPRGKVHEFSST 184
Query: 382 GVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLS 561
+ K LERY+ C ++ ++ + + ++ +E++ + + E L+RTQR +LGE+L +
Sbjct: 185 CMQKMLERYEKCSEGSKTTSIAKEEDPKALKREIANMEERIEILERTQRKMLGEELASCA 364
Query: 562 VKELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKL 714
+K+L QLE Q+E L R RK+++++ Q+E+L+R ER E N L+ ++
Sbjct: 365 LKDLNQLESQVERGLRNIRARKSEILVTQIEQLQRKERMFSEENNFLRKRI 517
>gb|U90346.1|PRU90346 Pinus radiata putative MADS box transcription factor PrMADS5 mRNA,
complete cds
Length = 1301
Score = 188 bits (405), Expect = 7e-047
Identities = 85/176 (48%), Positives = 112/176 (63%)
Frame = +1 / +1
Query: 184 GSEEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKL 363
G E M RG+ ++KRIEN +RQVT SKRRNGLLKKAYELSVLCDAEV LI+FS GKL
Sbjct: 151 GKERRRMVRGKTQMKRIENATSRQVTLSKRRNGLLKKAYELSVLCDAEVGLIVFSPSGKL 330
Query: 364 YEFGSAGVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGE 543
YEF S + K LE+Y+ C S ++ + Q QE+ + + LQ TQR +LGE
Sbjct: 331 YEFASTSMQKLLEKYEICSQECGTSESNKKQDPQCLKQEIENMEKRVRILQSTQRKMLGE 510
Query: 544 DLGPLSVKELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHK 711
L S+KEL QLE Q+E L+ R KT+V+++++E+L++ E E L K
Sbjct: 511 GLALCSIKELNQLEGQVERGLNHVRATKTKVLLDEIEKLKQKEHVFREEKALLHKK 678
>gb|CO169756.1|CO169756 NDL1_9_A05.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_9_A05_A029 5', mRNA sequence
Length = 753
Score = 184 bits (397), Expect = 9e-046
Identities = 81/164 (49%), Positives = 113/164 (68%)
Frame = +1 / +3
Query: 190 EEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYE 369
E M RG+ +++RIEN +RQVTFSKRRNGLLKKAYELSVLCDAEVALI+FS RGK++E
Sbjct: 261 ERTRMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSPRGKVHE 440
Query: 370 FGSAGVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDL 549
F S + + L++YQ + S+ + +Q E++++ + L+ QR +LGEDL
Sbjct: 441 FASPSMQRVLDKYQKYSQESGISDRTKEKNTQHLKGEIAQMEERVNILESAQRKMLGEDL 620
Query: 550 GPLSVKELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHL 681
S+KEL QLE Q E L++ R RKT+++M+Q E+L+ ER L
Sbjct: 621 ASCSMKELNQLESQAERGLNRIRARKTEILMDQREQLKSKERML 752
>gb|CO364965.1|CO364965 RTK1_22_G09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_G09_A029 5', mRNA sequence
Length = 833
Score = 127 bits (272), Expect(2) = 1e-045
Identities = 53/70 (75%), Positives = 61/70 (87%)
Frame = +1 / +3
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
M RG+ ++KRIEN +RQVTFSKRRNGLLKKAYELSVLCDAEV LI+FS RGKLYEFGS+
Sbjct: 177 MVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSS 356
Query: 382 GVTKTLERYQ 411
+ K +ERYQ
Sbjct: 357 SMQKIVERYQ 386
Score = 77.1 bits (162), Expect(2) = 1e-045
Identities = 34/84 (40%), Positives = 51/84 (60%)
Frame = +1 / +3
Query: 460 SQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQVM 639
+QS +E++ + L+ TQR +LGE L SVKEL LE Q E LS R R+T+++
Sbjct: 435 TQSLKREIANMEETIRLLESTQRKMLGEGLASCSVKELNNLESQAERGLSHIRSRRTEIL 614
Query: 640 MEQVEELRRTERHLGEMNRQLKHK 711
Q+++L++ ER L E N L+ K
Sbjct: 615 KNQIDQLKKKERVLSEENAFLRKK 686
>gb|CO363306.1|CO363306 RTK1_8_H10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_8_H10_A029 5', mRNA sequence
Length = 771
Score = 183 bits (394), Expect = 2e-045
Identities = 76/160 (47%), Positives = 114/160 (71%)
Frame = +1 / +3
Query: 235 ENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGVTKTLERYQH 414
EN +RQVTFSKRRNGLLKKAYELSVLCDAEVAL++FS RGKLY+F + + K LERY+
Sbjct: 6 ENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALMVFSPRGKLYDFANPSMQKMLERYEK 185
Query: 415 CCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQL 594
C ++ ++ + + ++ +E++ + + E L+RTQR +LGE+L ++K+L QLE Q+
Sbjct: 186 CSEGSKTTSIAKEEDPKALKREIANMEERIEILERTQRKMLGEELASCALKDLNQLESQV 365
Query: 595 ECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKL 714
E L R RK+++++ Q+E+L+R ER E N L+ ++
Sbjct: 366 ERGLRNIRARKSEILVTQIEQLQRKERMFSEENNFLRKRI 485
>gb|BX252374.1|BX252374 BX252374 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP063E09 similar to AGAMOUS LIKE MADS BOX
PROTEIN, mRNA sequence
Length = 674
Score = 182 bits (393), Expect = 3e-045
Identities = 84/170 (49%), Positives = 114/170 (67%)
Frame = +1 / +3
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
M RG+ ++K+IEN +RQVTFSKRRNGLLKKAYELSVLCDAEV LI+FS RGKLYEF S
Sbjct: 138 MVRGKTQMKKIENVTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFSSR 317
Query: 382 GVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLS 561
+ K LERYQ +N + + Q +E++ + K L+ TQR +LGEDL S
Sbjct: 318 CMQKMLERYQKYSEEFDINNTTKEHDIQDIKRELADKKEKISILELTQRKMLGEDLESCS 497
Query: 562 VKELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHK 711
+KEL QLE Q + L R R T+++++++++L+ ER + E N L+ K
Sbjct: 498 MKELNQLESQADRGLKHIRARLTKMLVDEIDQLKWKERIVTEENLFLRKK 647
>gb|DR090702.1|DR090702 RTAL1_16_G11.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_16_G11_A029 5', mRNA sequence
Length = 808
Score = 127 bits (272), Expect(2) = 4e-045
Identities = 53/70 (75%), Positives = 61/70 (87%)
Frame = +1 / +3
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
M RG+ ++KRIEN +RQVTFSKRRNGLLKKAYELSVLCDAEV LI+FS RGKLYEFGS+
Sbjct: 249 MVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSS 428
Query: 382 GVTKTLERYQ 411
+ K +ERYQ
Sbjct: 429 SMQKIVERYQ 458
Score = 75.3 bits (158), Expect(2) = 4e-045
Identities = 33/82 (40%), Positives = 50/82 (60%)
Frame = +1 / +3
Query: 460 SQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQVM 639
+QS +E++ + L+ TQR +LGE L SVKEL LE Q E LS R R+T+++
Sbjct: 507 TQSLKREIANMEETIRLLESTQRKMLGEGLASCSVKELNNLESQAERGLSHIRSRRTEIL 686
Query: 640 MEQVEELRRTERHLGEMNRQLK 705
Q+++L++ ER L E N L+
Sbjct: 687 KNQIDQLKKKERVLSEENAFLR 752
>gb|CO364847.1|CO364847 RTK1_22_D10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_D10_A029 3', mRNA sequence
Length = 867
Score = 114 bits (243), Expect(2) = 6e-045
Identities = 44/60 (73%), Positives = 55/60 (91%)
Frame = +1 / -2
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRG++E+K+IEN ++RQVTF KRR GL+KKAYELSVLCDA+VALI+FS RGKLYE G++
Sbjct: 647 MGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTS 468
Score = 88.1 bits (186), Expect(2) = 6e-045
Identities = 39/107 (36%), Positives = 65/107 (60%)
Frame = +1 / -2
Query: 397 LERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQ 576
LERYQ C A+ N S + + QE++ L+ + + L+ T R+L+GE LG +S +EL
Sbjct: 434 LERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELN 255
Query: 577 QLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKLE 717
QLE +L+ ++Q R +K ++M++++ L+ E L N L+ KLE
Sbjct: 254 QLESRLQRGINQVRAKKHELMLDEIRALQSKEHTLRINNMMLQEKLE 114
>gb|CV031753.1|CV031753 RTNACL1_3_B05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_3_B05_A029 5', mRNA sequence
Length = 851
Score = 114 bits (243), Expect(2) = 6e-045
Identities = 44/60 (73%), Positives = 55/60 (91%)
Frame = +1 / +2
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRG++E+K+IEN ++RQVTF KRR GL+KKAYELSVLCDA+VALI+FS RGKLYE G++
Sbjct: 179 MGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTS 358
Score = 88.1 bits (186), Expect(2) = 6e-045
Identities = 39/107 (36%), Positives = 65/107 (60%)
Frame = +1 / +2
Query: 397 LERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQ 576
LERYQ C A+ N S + + QE++ L+ + + L+ T R+L+GE LG +S +EL
Sbjct: 392 LERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELN 571
Query: 577 QLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKLE 717
QLE +L+ ++Q R +K ++M++++ L+ E L N L+ KLE
Sbjct: 572 QLESRLQRGINQVRAKKHELMLDEIRALQSKEHTLRINNMMLQEKLE 712
>gb|DR058437.1|DR058437 RTNIT1_11_F11.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_11_F11_A029 5', mRNA sequence
Length = 795
Score = 114 bits (243), Expect(2) = 6e-045
Identities = 44/60 (73%), Positives = 55/60 (91%)
Frame = +1 / +3
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRG++E+K+IEN ++RQVTF KRR GL+KKAYELSVLCDA+VALI+FS RGKLYE G++
Sbjct: 201 MGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTS 380
Score = 88.1 bits (186), Expect(2) = 6e-045
Identities = 39/107 (36%), Positives = 65/107 (60%)
Frame = +1 / +3
Query: 397 LERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQ 576
LERYQ C A+ N S + + QE++ L+ + + L+ T R+L+GE LG +S +EL
Sbjct: 411 LERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELN 590
Query: 577 QLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKLE 717
QLE +L+ ++Q R +K ++M++++ L+ E L N L+ KLE
Sbjct: 591 QLESRLQRGINQVRAKKHELMLDEIRALQSKEHTLRINNMMLQEKLE 731
>gb|CF392697.1|CF392697 RTDR3_5_H09.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_5_H09_A022 5', mRNA
sequence
Length = 727
Score = 133 bits (286), Expect(2) = 6e-045
Identities = 55/70 (78%), Positives = 64/70 (91%)
Frame = +1 / +2
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRG V+L+RIENKINRQVTFSKRRNGL+KKA ELS+LCDAEVALI+FS +GKLYEF S+
Sbjct: 281 MGRGPVQLRRIENKINRQVTFSKRRNGLIKKASELSILCDAEVALIVFSNKGKLYEFSSS 460
Query: 382 GVTKTLERYQ 411
+TK LERY+
Sbjct: 461 SMTKILERYR 490
Score = 68.4 bits (143), Expect(2) = 6e-045
Identities = 30/61 (49%), Positives = 42/61 (68%)
Frame = +1 / +2
Query: 478 EMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQVMMEQVEE 657
E++ L+ + + LQR++RHLLGEDL L +LQ LE+QLE AL + KTQ M+ +EE
Sbjct: 545 ELTHLKEEVDRLQRSRRHLLGEDLHQLGATDLQHLEQQLEEALQKVTLTKTQFMLHLIEE 724
Query: 658 L 660
L
Sbjct: 725 L 727
>gb|CF401468.1|CF401468 RTWW1_12_E09.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_12_E09_A015 5', mRNA sequence
Length = 811
Score = 132 bits (282), Expect(3) = 6e-045
Identities = 54/78 (69%), Positives = 66/78 (84%)
Frame = +1 / +3
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRGRV+L+ IENKINRQVTFSKRR+GL+KKA ELS+LCDAEVA+I+FS GKLYEF S+
Sbjct: 33 MGRGRVQLRMIENKINRQVTFSKRRSGLMKKASELSILCDAEVAMIVFSSTGKLYEFSSS 212
Query: 382 GVTKTLERYQHCCYNAQD 435
+TK LER++ C +D
Sbjct: 213 SMTKILERHRKCSTLVED 266
Score = 67.5 bits (141), Expect(3) = 6e-045
Identities = 29/52 (55%), Positives = 40/52 (76%)
Frame = +1 / +3
Query: 478 EMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQ 633
E+++L+ K + LQR +RH++GEDL LSVKELQQLE+QLE L Q + +K Q
Sbjct: 297 ELTELKRKTDNLQRWRRHVMGEDLDQLSVKELQQLEQQLEEGLKQVKLKKEQ 452
Score = 26.3 bits (51), Expect(3) = 6e-045
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1 / +3
Query: 829 HSVAMDCEPTLQIGYP 876
H ++ CEPTL IG P
Sbjct: 588 HVLSRHCEPTLHIGCP 635
>gb|CX645838.1|CX645838 COLD1_5_D01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_5_D01_A029 5', mRNA sequence
Length = 705
Score = 182 bits (391), Expect = 6e-045
Identities = 84/176 (47%), Positives = 112/176 (63%)
Frame = +1 / +2
Query: 184 GSEEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKL 363
G E M RG+ ++KRIEN +RQVT SKRRNGLLKKAYELSVLCDAEV LI+FS GKL
Sbjct: 149 GKERRRMVRGKTQMKRIENPTSRQVTLSKRRNGLLKKAYELSVLCDAEVGLIVFSPSGKL 328
Query: 364 YEFGSAGVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGE 543
YEF S + K LE+Y+ S ++ + Q QE+ + + LQ TQR + GE
Sbjct: 329 YEFASTSMQKLLEKYEIGSQECGTSESNKKQDPQCLKQEIENMEKRVRILQSTQRKMSGE 508
Query: 544 DLGPLSVKELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHK 711
L S+KEL QLE Q+E L++ R KT+V+++++E+L++ E L E L K
Sbjct: 509 GLALCSIKELNQLEGQVERGLNRVRATKTKVLVDEIEKLKQKEHVLREEKALLHKK 676
>gb|DR177222.1|DR177222 RTMNUT1_3_H10.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_3_H10_A029 5', mRNA sequence
Length = 770
Score = 182 bits (391), Expect = 6e-045
Identities = 84/176 (47%), Positives = 112/176 (63%)
Frame = +1 / +3
Query: 184 GSEEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKL 363
G E M RG+ ++KRIEN +RQVT SKRRNGLLKKAYELSVLCDAEV LI+FS GKL
Sbjct: 162 GKERRRMVRGKTQMKRIENPTSRQVTLSKRRNGLLKKAYELSVLCDAEVGLIVFSPSGKL 341
Query: 364 YEFGSAGVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGE 543
YEF S + K LE+Y+ S ++ + Q QE+ + + LQ TQR + GE
Sbjct: 342 YEFASTSMQKLLEKYEIGSQECGTSESNKKQDPQCLKQEIENMEKRVRILQSTQRKMSGE 521
Query: 544 DLGPLSVKELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHK 711
L S+KEL QLE Q+E L++ R KT+V+++++E+L++ E L E L K
Sbjct: 522 GLALCSIKELNQLEGQVERGLNRVRATKTKVLVDEIEKLKQKEHVLREEKALLHKK 689
>gb|CX650456.1|CX650456 COLD1_45_F12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_45_F12_A029 5', mRNA sequence
Length = 852
Score = 133 bits (284), Expect(2) = 2e-044
Identities = 58/98 (59%), Positives = 73/98 (74%)
Frame = +1 / +1
Query: 142 GRPGS*QKRASSDLGSEEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCD 321
G G ++R S+ MGRGRV+L+ IENKINRQVTFSKRR GL+KKA ELS+LCD
Sbjct: 229 GE*GPERERESASSVKCPFKMGRGRVQLRMIENKINRQVTFSKRRTGLMKKASELSILCD 408
Query: 322 AEVALIIFSGRGKLYEFGSAGVTKTLERYQHCCYNAQD 435
AEVA+I+FS RGKLY+F S+ +TK LER++ C +D
Sbjct: 409 AEVAVIVFSNRGKLYQFSSSSMTKILERHRKCSTLVED 522
Score = 67.5 bits (141), Expect(2) = 2e-044
Identities = 29/52 (55%), Positives = 40/52 (76%)
Frame = +1 / +1
Query: 478 EMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQ 633
E+++L+ K + LQR +RH++GEDL LSVKELQQLE+QLE L Q + +K Q
Sbjct: 553 ELTELKRKTDNLQRWRRHVMGEDLDQLSVKELQQLEQQLEEGLKQVKLKKEQ 708
>gb|DR079072.1|DR079072 RTFEPL1_8_G11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_8_G11_A029 5', mRNA sequence
Length = 829
Score = 127 bits (272), Expect(2) = 2e-044
Identities = 53/70 (75%), Positives = 61/70 (87%)
Frame = +1 / +2
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
M RG+ ++KRIEN +RQVTFSKRRNGLLKKAYELSVLCDAEV LI+FS RGKLYEFGS+
Sbjct: 146 MVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSS 325
Query: 382 GVTKTLERYQ 411
+ K +ERYQ
Sbjct: 326 SMQKIVERYQ 355
Score = 73.0 bits (153), Expect(2) = 2e-044
Identities = 33/84 (39%), Positives = 50/84 (59%)
Frame = +1 / +2
Query: 460 SQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQVM 639
+QS++ ++ + L+ TQR +LGE L SVKEL LE Q E LS R R+T++
Sbjct: 404 TQSFFFLIANMEETILFLESTQRKMLGEGLASCSVKELNNLESQAERGLSHIRSRRTEIF 583
Query: 640 MEQVEELRRTERHLGEMNRQLKHK 711
Q+++L++ ER L E N L+ K
Sbjct: 584 KNQIDQLKKKERMLSEENAFLRKK 655
>gb|DR109660.1|DR109660 RTS1_3_G12.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_G12_A029 5', mRNA sequence
Length = 826
Score = 112 bits (239), Expect(2) = 2e-044
Identities = 44/58 (75%), Positives = 53/58 (91%)
Frame = +1 / +3
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFG 375
MGRG++E+K+IEN ++RQVTF KRR GL+KKA+ELSVLCDAEVALI+FS RGKLYE G
Sbjct: 186 MGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAHELSVLCDAEVALIVFSSRGKLYELG 359
Score = 88.1 bits (186), Expect(2) = 2e-044
Identities = 39/107 (36%), Positives = 65/107 (60%)
Frame = +1 / +3
Query: 397 LERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQ 576
LERYQ C A+ N S + + QE++ L+ + + L+ T R+L+GE LG +S +EL
Sbjct: 399 LERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELN 578
Query: 577 QLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKLE 717
QLE +L+ ++Q R +K ++M++++ L+ E L N L+ KLE
Sbjct: 579 QLESRLQRGINQVRAKKHELMLDEIRALQSKEHTLRINNMMLQEKLE 719
>gb|CO201105.1|CO201105 RTCNT2_3_D12.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_3_D12_A029 5', mRNA sequence
Length = 758
Score = 114 bits (243), Expect(2) = 2e-044
Identities = 44/60 (73%), Positives = 55/60 (91%)
Frame = +1 / +1
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRG++E+K+IEN ++RQVTF KRR GL+KKAYELSVLCDA+VALI+FS RGKLYE G++
Sbjct: 193 MGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTS 372
Score = 86.3 bits (182), Expect(2) = 2e-044
Identities = 38/107 (35%), Positives = 65/107 (60%)
Frame = +1 / +1
Query: 397 LERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQ 576
LERYQ C A+ N S + + QE++ L+ + + L+ T R+L+GE LG +S +EL
Sbjct: 406 LERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELT 585
Query: 577 QLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKLE 717
QLE +L+ ++Q R +K ++M++++ L+ E L N L+ +LE
Sbjct: 586 QLESRLQRGINQVRAKKHELMLDEIRALQSKEHTLRINNMMLQERLE 726
>gb|CX645252.1|CX645252 COLD1_1_H11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_1_H11_A029 3', mRNA sequence
Length = 793
Score = 112 bits (239), Expect(2) = 7e-044
Identities = 44/58 (75%), Positives = 53/58 (91%)
Frame = +1 / -3
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFG 375
MGRG++E+K+IEN ++RQVTF KRR GL+KKA+ELSVLCDAEVALI+FS RGKLYE G
Sbjct: 614 MGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAHELSVLCDAEVALIVFSSRGKLYELG 441
Score = 86.3 bits (182), Expect(2) = 7e-044
Identities = 38/107 (35%), Positives = 65/107 (60%)
Frame = +1 / -3
Query: 397 LERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQ 576
LERYQ C A+ N S + + QE++ L+ + + L+ T R+L+GE LG +S +EL
Sbjct: 404 LERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELT 225
Query: 577 QLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKLE 717
QLE +L+ ++Q R +K ++M++++ L+ E L N L+ +LE
Sbjct: 224 QLESRLQRGINQVRAKKHELMLDEIRALQSKEHTLRINNMMLQERLE 84
>gb|CF670172.1|CF670172 RTCNT1_48_B11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_B11_A029 5', mRNA sequence
Length = 788
Score = 114 bits (243), Expect(2) = 7e-044
Identities = 45/68 (66%), Positives = 57/68 (83%)
Frame = +1 / +2
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRG++++K+IEN ++RQVTF KRR GL+KKAYELSVLCDAEVALI+FSG GKLYE G++
Sbjct: 44 MGRGKIQIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDAEVALIVFSGGGKLYELGTS 223
Query: 382 GVTKTLER 405
+ R
Sbjct: 224 NSNRNSMR 247
Score = 84.5 bits (178), Expect(2) = 7e-044
Identities = 37/107 (34%), Positives = 65/107 (60%)
Frame = +1 / +2
Query: 397 LERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQ 576
LERYQ C A+ N S + + QE++ L+ + + L+ T R+L+G+ LG +S +EL
Sbjct: 254 LERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGKGLGSVSFEELT 433
Query: 577 QLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKLE 717
QLE +L+ ++Q R +K ++M++++ L+ E L N L+ +LE
Sbjct: 434 QLESRLQRGINQVRAKKHELMLDEIRALQSKEHTLRINNMMLQERLE 574
>gb|U90344.1|PRU90344 Pinus radiata putative MADS box transcription factor PrMADS9 mRNA,
complete cds
Length = 1038
Score = 120 bits (257), Expect(2) = 5e-043
Identities = 51/70 (72%), Positives = 59/70 (84%)
Frame = +1 / +2
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
M RG+ ++KRIEN +RQVTFSKRRNGLLKKAYELSVLCDAEV LIIFS RGKLYEF S
Sbjct: 119 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLYEFASP 298
Query: 382 GVTKTLERYQ 411
+ + LE+Y+
Sbjct: 299 SMEEILEKYK 328
Score = 75.3 bits (158), Expect(2) = 5e-043
Identities = 36/95 (37%), Positives = 54/95 (56%)
Frame = +1 / +2
Query: 427 AQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECAL 606
AQ + S+ Q+++ + + L+ TQR +LGE L S+ EL +LE Q E L
Sbjct: 353 AQTTKEQDTQYSKHSKQKLANMEEQIRILESTQRKMLGEGLESCSMAELNKLESQAERGL 532
Query: 607 SQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHK 711
S R RKT+++++Q+E L+R ER L E N L K
Sbjct: 533 SHIRARKTEILVDQIECLKRKERLLSEENALLSRK 637
>gb|DR384822.1|DR384822 RTHG1_4_G03.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_G03_A029 5', mRNA sequence
Length = 668
Score = 120 bits (257), Expect(2) = 5e-043
Identities = 51/70 (72%), Positives = 59/70 (84%)
Frame = +1 / +2
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
M RG+ ++KRIEN +RQVTFSKRRNGLLKKAYELSVLCDAEV LIIFS RGKLYEF S
Sbjct: 119 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLYEFASP 298
Query: 382 GVTKTLERYQ 411
+ + LE+Y+
Sbjct: 299 SMEEILEKYK 328
Score = 75.3 bits (158), Expect(2) = 5e-043
Identities = 36/95 (37%), Positives = 54/95 (56%)
Frame = +1 / +2
Query: 427 AQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECAL 606
AQ + S+ Q+++ + + L+ TQR +LGE L S+ EL +LE Q E L
Sbjct: 353 AQTTKEQDTQYSKHSKQKLANMEEQIRILESTQRKMLGEGLESCSMTELNKLESQAERGL 532
Query: 607 SQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHK 711
S R RKT+++++Q+E L+R ER L E N L K
Sbjct: 533 SHIRARKTEILVDQIECLKRKERLLSEENALLSRK 637
>gb|CO197079.1|CO197079 GEO1_3_F06.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_3_F06_A029 5', mRNA sequence
Length = 692
Score = 175 bits (377), Expect = 5e-043
Identities = 72/156 (46%), Positives = 111/156 (71%)
Frame = +1 / +1
Query: 190 EEVGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYE 369
+E MGRGR+ L++IE+ +RQVTFSKRRNGLLKKAYELSVLCD E+ LI+ S RGK++E
Sbjct: 223 KERRMGRGRIRLRKIESATSRQVTFSKRRNGLLKKAYELSVLCDVELGLIVLSPRGKVHE 402
Query: 370 FGSAGVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDL 549
F S + K LERY+ C ++ ++ + + ++ +E++ + + E L+RTQR +LGE+L
Sbjct: 403 FSSTCMQKMLERYEKCSEGSKTTSIAKEEDPKALKREIANMEERIEILERTQRKMLGEEL 582
Query: 550 GPLSVKELQQLEKQLECALSQARQRKTQVMMEQVEE 657
++ +L QLE Q+E L R RK+++++ Q+E+
Sbjct: 583 ASCALNDLNQLESQVERCLRNIRARKSEILVTQIEQ 690
>gb|CF475501.1|CF475501 RTWW2_12_G12.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_12_G12_A021 5', mRNA sequence
Length = 779
Score = 120 bits (257), Expect(2) = 1e-042
Identities = 51/70 (72%), Positives = 59/70 (84%)
Frame = +1 / +2
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
M RG+ ++KRIEN +RQVTFSKRRNGLLKKAYELSVLCDAEV LIIFS RGKLYEF S
Sbjct: 68 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLYEFASP 247
Query: 382 GVTKTLERYQ 411
+ + LE+Y+
Sbjct: 248 SMEEILEKYK 277
Score = 73.9 bits (155), Expect(2) = 1e-042
Identities = 35/95 (36%), Positives = 54/95 (56%)
Frame = +1 / +2
Query: 427 AQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECAL 606
AQ + S+ ++++ + + L+ TQR +LGE L S+ EL +LE Q E L
Sbjct: 302 AQTTKEQDTQYSKHSKEKLANMEEQIRILESTQRKMLGEGLESCSMTELNKLESQAERGL 481
Query: 607 SQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHK 711
S R RKT+++++Q+E L+R ER L E N L K
Sbjct: 482 SHIRARKTEILVDQIECLKRKERLLSEENALLSRK 586
>gb|DR178004.1|DR178004 RTMNUT1_8_E05.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_8_E05_A029 5', mRNA sequence
Length = 779
Score = 114 bits (243), Expect(2) = 2e-042
Identities = 44/60 (73%), Positives = 55/60 (91%)
Frame = +1 / +1
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRG++E+K+IEN ++RQVTF KRR GL+KKAYELSVLCDA+VALI+FS RGKLYE G++
Sbjct: 265 MGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTS 444
Score = 79.9 bits (168), Expect(2) = 2e-042
Identities = 34/95 (35%), Positives = 59/95 (62%)
Frame = +1 / +1
Query: 397 LERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQ 576
LERYQ C A+ N S + + QE++ L+ + + L+ T R+L+GE LG +S +EL
Sbjct: 478 LERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELT 657
Query: 577 QLEKQLECALSQARQRKTQVMMEQVEELRRTERHL 681
QLE +L+ ++Q R +K ++M++++ L+ E L
Sbjct: 658 QLESRLQRGINQVRAKKHELMLDEIRALQSKEHTL 762
>gb|CO163263.1|CO163263 FLD1_40_B04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_B04_A029 5', mRNA sequence
Length = 841
Score = 127 bits (272), Expect(2) = 2e-042
Identities = 53/70 (75%), Positives = 61/70 (87%)
Frame = +1 / +2
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
M RG+ ++KRIEN +RQVTFSKRRNGLLKKAYELSVLCDAEV LI+FS RGKLYEFGS+
Sbjct: 44 MVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSS 223
Query: 382 GVTKTLERYQ 411
+ K +ERYQ
Sbjct: 224 SMQKIVERYQ 253
Score = 66.1 bits (138), Expect(2) = 2e-042
Identities = 27/71 (38%), Positives = 44/71 (61%)
Frame = +1 / +2
Query: 460 SQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQVM 639
+QS +E++ + L+ TQR +LGE L SVKEL LE Q E LS R R+T+++
Sbjct: 302 TQSLKREIANMEETIRLLESTQRKMLGEGLASCSVKELNNLESQAERGLSHIRSRRTEIL 481
Query: 640 MEQVEELRRTE 672
Q+++L++ +
Sbjct: 482 KNQIDQLKKKD 514
>gb|DR072089.1|DR072089 RTDK1_24_B10.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_24_B10_A029 3', mRNA sequence
Length = 768
Score = 171 bits (368), Expect = 9e-042
Identities = 72/155 (46%), Positives = 111/155 (71%)
Frame = +1 / -3
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
M RG+ ++K+IEN +RQVTFSKRRNGLLKKA+ELSVLCDAEV LI+FS RGKLYEF
Sbjct: 646 MARGKTQMKKIENVTSRQVTFSKRRNGLLKKAFELSVLCDAEVGLIVFSPRGKLYEFSRP 467
Query: 382 GVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLS 561
+ K L++Y+ + +N + ++Q +E++ + K L+ T+R +LG++L S
Sbjct: 466 CMGKLLQKYEKNSRESGINNAAKEKDTQHSKREIANMEEKIRILESTERKMLGQNLASCS 287
Query: 562 VKELQQLEKQLECALSQARQRKTQVMMEQVEELRR 666
+EL QL+ Q+E L++ R+RK +++M+++E+L+R
Sbjct: 286 DEELSQLQSQVERGLNRIRRRKNELLMDRIEQLKR 182
>gb|DR178023.1|DR178023 RTMNUT1_8_F12.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_8_F12_A029 5', mRNA sequence
Length = 811
Score = 171 bits (368), Expect = 9e-042
Identities = 72/155 (46%), Positives = 111/155 (71%)
Frame = +1 / +1
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
M RG+ ++K+IEN +RQVTFSKRRNGLLKKA+ELSVLCDAEV LI+FS RGKLYEF
Sbjct: 139 MARGKTQMKKIENVTSRQVTFSKRRNGLLKKAFELSVLCDAEVGLIVFSPRGKLYEFSRP 318
Query: 382 GVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLS 561
+ K L++Y+ + +N + ++Q +E++ + K L+ T+R +LG++L S
Sbjct: 319 CMGKLLQKYEKNSRESGINNAAKEKDTQHSKREIANMEEKIRILESTERKMLGQNLASCS 498
Query: 562 VKELQQLEKQLECALSQARQRKTQVMMEQVEELRR 666
+EL QL+ Q+E L++ R+RK +++M+++E+L+R
Sbjct: 499 DEELSQLQSQVERGLNRIRRRKNELLMDRIEQLKR 603
>gb|U90347.1|PRU90347 Pinus radiata putative MADS box transcription factor PrMADS6 mRNA,
complete cds
Length = 993
Score = 171 bits (367), Expect = 1e-041
Identities = 71/170 (41%), Positives = 115/170 (67%)
Frame = +1 / +3
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
M RG+ ++++IE+ +RQVTFSKRRNGLLKKAYE+SVLCDA++ LI+FS RGK+YEF S
Sbjct: 75 MARGKTQMRKIESATSRQVTFSKRRNGLLKKAYEMSVLCDAQLGLIVFSPRGKVYEFSST 254
Query: 382 GVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLS 561
+ K L RY++ ++ ++ + + Q ++++ + + E L+ R +LG++L +
Sbjct: 255 CMQKMLARYENFSEGSKATSTAKEQDVQGLKRQIANMEERIEILESMHRKMLGDELASCA 434
Query: 562 VKELQQLEKQLECALSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHK 711
+K+L +LE Q+E L R RKT++++ ++E+L+R E L E N L K
Sbjct: 435 LKDLNELESQVERGLRNVRARKTEILVTEIEQLQRKEWILSEENAFLGKK 584
>gb|CF476348.1|CF476348 RTWW2_22_G12.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_22_G12_A021 5', mRNA sequence
Length = 757
Score = 111 bits (237), Expect(2) = 2e-041
Identities = 46/71 (64%), Positives = 56/71 (78%)
Frame = +1 / +2
Query: 199 GMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGS 378
GMGRG+V ++RIEN +RQVTFSKRRNGLLKKA EL VLCDAEV +IIFS GK YE +
Sbjct: 254 GMGRGKVVVRRIENSTSRQVTFSKRRNGLLKKARELGVLCDAEVGVIIFSNTGKRYELAT 433
Query: 379 AGVTKTLERYQ 411
+ + +ERY+
Sbjct: 434 SSMKSIIERYE 466
Score = 79.0 bits (166), Expect(2) = 2e-041
Identities = 33/75 (44%), Positives = 51/75 (68%)
Frame = +1 / +2
Query: 469 WYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQVMMEQ 648
W +E+ +++ +F+ LQ RHLLGE+L LSVK+L LE+ LE L + R RK +++ ++
Sbjct: 527 WRKEVMQMKEEFKRLQDQNRHLLGEELSALSVKDLHHLEQVLELTLQRVRDRKDKILNDE 706
Query: 649 VEELRRTERHLGEMN 693
+EEL + ER L E N
Sbjct: 707 LEELSQKERCLYEEN 751
>gb|CF394057.1|CF394057 RTDS2_3_D04.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_3_D04_A021 3', mRNA sequence
Length = 611
Score = 114 bits (243), Expect(2) = 2e-041
Identities = 44/60 (73%), Positives = 55/60 (91%)
Frame = +1 / -3
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRG++E+K+IEN ++RQVTF KRR GL+KKAYELSVLCDA+VALI+FS RGKLYE G++
Sbjct: 477 MGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTS 298
Score = 76.2 bits (160), Expect(2) = 2e-041
Identities = 32/89 (35%), Positives = 56/89 (62%)
Frame = +1 / -3
Query: 397 LERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQ 576
LERYQ C A+ N S + + QE++ L+ + + L+ T R+L+GE LG +S +EL
Sbjct: 267 LERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELT 88
Query: 577 QLEKQLECALSQARQRKTQVMMEQVEELR 663
QLE +L ++Q R +K ++M++++ L+
Sbjct: 87 QLESRLXRGINQVRAKKHELMLDEIRALQ 1
>gb|CF477439.1|CF477439 RTWW3_7_F06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_7_F06_A022 5', mRNA sequence
Length = 758
Score = 133 bits (286), Expect(2) = 3e-041
Identities = 55/70 (78%), Positives = 64/70 (91%)
Frame = +1 / +2
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRG V+L+RIENKINRQVTFSKRRNGL+KKA ELS+LCDAEVALI+FS +GKLYEF S+
Sbjct: 146 MGRGPVQLRRIENKINRQVTFSKRRNGLIKKASELSILCDAEVALIVFSNKGKLYEFSSS 325
Query: 382 GVTKTLERYQ 411
+TK LERY+
Sbjct: 326 SMTKILERYR 355
Score = 56.1 bits (116), Expect(2) = 3e-041
Identities = 25/53 (47%), Positives = 35/53 (66%)
Frame = +1 / +2
Query: 478 EMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQV 636
E++ L+ + + LQR++RHLLGEDL L +LQ LE+QLE AL + K V
Sbjct: 410 ELTHLKEEVDRLQRSRRHLLGEDLHQLGATDLQHLEQQLEEALQKVTLTKVSV 568
>gb|CO367965.1|CO367965 RTK1_37_F12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_37_F12_A029 5', mRNA sequence
Length = 852
Score = 169 bits (364), Expect = 3e-041
Identities = 71/155 (45%), Positives = 111/155 (71%)
Frame = +1 / +1
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
M RG+ ++K+IEN +RQVTFSKRRNGLLKKA+ELSVLCDAEV LI+FS RGKLYEF
Sbjct: 145 MARGKTQMKKIENVTSRQVTFSKRRNGLLKKAFELSVLCDAEVGLIVFSPRGKLYEFSRP 324
Query: 382 GVTKTLERYQHCCYNAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLS 561
+ K L++Y+ + +N + ++Q +E++ + K L+ T+R +LG++L S
Sbjct: 325 CMGKLLQKYEKNSRESGINNAAKEKDTQHSKREIANMEEKIRILESTERKMLGQNLASCS 504
Query: 562 VKELQQLEKQLECALSQARQRKTQVMMEQVEELRR 666
+EL QL+ Q+E L++ ++RK +++M+++E+L+R
Sbjct: 505 DEELSQLQSQVERGLNRIQRRKNELLMDRIEQLKR 609
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 665,891,771
Number of Sequences: 355925
Number of extensions: 10083931
Number of successful extensions: 48028
Number of sequences better than 1.0e-020: 193
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 19473320970
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)