TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9196052.2.1
(771 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR048963.1|DR048963 RTBOR1_12_H05.b1_A029 Roots plus add... 68 1e-010
gb|BX680213.1|BX680213 BX680213 RS Pinus pinaster cDNA clon... 32 4.4
gb|CX645259.1|CX645259 COLD1_1_A11.g1_A029 Root cold Pinus ... 32 4.4
gb|DR119768.1|DR119768 RTMG1_25_H11.b1_A029 Roots minus mag... 32 4.4
gb|DR093009.1|DR093009 STRR1_5_A12.g1_A033 Stem Response Re... 32 6.0
gb|BE662385.1|BE662385 ST62/ST62F04 Pine TriplEx shoot tip ... 31 8.3
>gb|DR048963.1|DR048963 RTBOR1_12_H05.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_12_H05_A029 3', mRNA sequence
Length = 828
Score = 67.5 bits (141), Expect = 1e-010
Identities = 28/48 (58%), Positives = 40/48 (83%)
Frame = -1 / -3
Query: 639 TKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLLR* 496
+K+L ETC+YI+SLHREVDDLS++L++L+A+ + S A +I SLLR*
Sbjct: 454 SKVLLETCNYIRSLHREVDDLSEKLAELLANTEDGSAQAALIMSLLR* 311
>gb|BX680213.1|BX680213 BX680213 RS Pinus pinaster cDNA clone RS40F01, mRNA sequence
Length = 584
Score = 32.2 bits (64), Expect = 4.4
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -1 / +3
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLM 553
+NEL +L++LLP++ + S ++ YI L R++ LS + +L+
Sbjct: 207 LNELYGKLRSLLPNSTFNMKKKVSNPAIVCGILKYIPQLRRQIKILSRQRDELL 368
>gb|CX645259.1|CX645259 COLD1_1_A11.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_1_A11_A029 5', mRNA sequence
Length = 838
Score = 32.2 bits (64), Expect = 4.4
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -1 / +2
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLM 553
+NEL +L++LLP++ + S ++ YI L R++ LS + +L+
Sbjct: 281 LNELYGKLRSLLPNSTFNMKKKVSNPAIVCGILKYIPQLRRQIKILSRQRDELL 442
>gb|DR119768.1|DR119768 RTMG1_25_H11.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_25_H11_A029 3', mRNA sequence
Length = 664
Score = 32.2 bits (64), Expect = 4.4
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -1 / -3
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLM 553
+NEL +L++LLP++ + S ++ YI L R++ LS + +L+
Sbjct: 446 LNELYGKLRSLLPNSTFNMKKKVSNPAIVCGILKYIPQLRRQIKILSRQRDELL 285
>gb|DR093009.1|DR093009 STRR1_5_A12.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_5_A12_A033 5', mRNA sequence
Length = 535
Score = 31.8 bits (63), Expect = 6.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1 / -3
Query: 367 RQCAEIWRWREAGRRPWMERDSARAD 444
R+C + RWR + RR W R R D
Sbjct: 278 RRCRRLHRWRNSRRRGWRHRHWRRGD 201
>gb|BE662385.1|BE662385 ST62/ST62F04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST62/ST62F04, mRNA sequence
Length = 281
Score = 31.3 bits (62), Expect = 8.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2 / -3
Query: 263 LLTRAA*PKYGFSLSSTLGCLFPCYTPSSLAPFP 162
LLT + P YG + SS +F C PS L P P
Sbjct: 147 LLTLSDRPTYGXATSSISFAIFFCNLPSLLLPLP 46
Database: Pinus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:25 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 280,248,369
Number of Sequences: 355925
Number of extensions: 3251052
Number of successful extensions: 30209
Number of sequences better than 10.0: 7
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10999199580
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)