TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9009927.2.1
(404 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX647457.1|CX647457 COLD1_16_B04.g1_A029 Root cold Pinus... 95 1e-038
gb|CO366297.1|CO366297 RTK1_27_B09.b1_A029 Roots minus pota... 91 2e-037
gb|DR167765.1|DR167765 RTPHOS1_20_H05.g1_A029 Roots minus p... 91 2e-037
gb|CO158547.1|CO158547 FLD1_7_D03.g1_A029 Root flooded Pinu... 93 3e-037
gb|CF671993.1|CF671993 RTCNT1_60_D02.g1_A029 Root control P... 91 5e-037
gb|CF391376.1|CF391376 RTDR3_1_G04.g1_A022 Loblolly pine ro... 92 9e-037
gb|AW011253.1|AW011253 ST18F02 Pine TriplEx shoot tip libra... 89 2e-035
gb|CO162972.1|CO162972 FLD1_38_D09.g1_A029 Root flooded Pin... 84 3e-035
gb|CF668816.1|CF668816 RTCNT1_38_G11.g1_A029 Root control P... 83 4e-034
gb|CF667292.1|CF667292 RTCNT1_29_G02.b1_A029 Root control P... 82 1e-033
gb|CO361899.1|CO361899 NDL2_7_G04.g1_A029 Needles control 2... 87 2e-033
gb|DT639133.1|DT639133 EST1154064 Normalized pine embryo li... 83 4e-033
gb|DR694940.1|DR694940 EST1085033 Normalized pine embryo li... 83 4e-033
gb|CX650454.1|CX650454 COLD1_45_F10.g1_A029 Root cold Pinus... 82 7e-033
gb|DR024153.1|DR024153 STRS1_62_E05.g1_A034 Shoot tip pitch... 82 7e-033
gb|CF387084.1|CF387084 RTDR1_10_E10.g1_A015 Loblolly pine r... 82 7e-033
gb|DR060728.1|DR060728 RTNIT1_29_D06.g1_A029 Roots minus ni... 82 7e-033
gb|CF388213.1|CF388213 RTDR2_1_B07.g1_A021 Loblolly pine ro... 82 7e-033
gb|DR111240.1|DR111240 RTS1_16_G05.b1_A029 Roots minus sulf... 82 7e-033
gb|BX681391.1|BX681391 BX681391 RS Pinus pinaster cDNA clon... 82 7e-033
gb|BX679906.1|BX679906 BX679906 RS Pinus pinaster cDNA clon... 80 1e-032
gb|CO200901.1|CO200901 RTCNT2_2_G06.b1_A029 Root control 2 ... 82 2e-032
gb|CO361315.1|CO361315 NDL2_4_D03.b1_A029 Needles control 2... 80 2e-032
gb|CO361397.1|CO361397 NDL2_4_D03.g1_A029 Needles control 2... 80 2e-032
gb|DR020720.1|DR020720 STRS1_38_G12.g1_A034 Shoot tip pitch... 85 2e-032
gb|CO198121.1|CO198121 GEO1_11_A02.g1_A029 Root gravitropis... 80 2e-032
gb|BF517838.1|BF517838 NXSI_027_G09_F NXSI (Nsf Xylem Side ... 79 3e-032
gb|DR110104.1|DR110104 RTS1_8_C03.g1_A029 Roots minus sulfu... 87 3e-032
gb|DR161095.1|DR161095 RTFE1_9_G03.g1_A029 Roots minus iron... 81 3e-032
gb|DR079932.1|DR079932 RTFEPL1_18_F11.g1_A029 Roots plus ad... 83 3e-032
gb|CF669490.1|CF669490 RTCNT1_44_A10.b1_A029 Root control P... 83 3e-032
gb|CN852309.1|CN852309 Pi148-1 Salicylate-treated slash pin... 81 4e-032
gb|DR163874.1|DR163874 RTFE1_45_A12.g1_A029 Roots minus iro... 83 5e-032
gb|CO201585.1|CO201585 RTCNT2_6_F07.g1_A029 Root control 2 ... 83 5e-032
gb|DR058733.1|DR058733 RTNIT1_13_C07.g1_A029 Roots minus ni... 82 5e-032
gb|AW065119.1|AW065119 ST39H05 Pine TriplEx shoot tip libra... 81 5e-032
gb|DR099337.1|DR099337 STRR1_54_G08.g1_A033 Stem Response R... 82 5e-032
gb|BQ701670.1|BQ701670 NXSI_118_C02_F NXSI (Nsf Xylem Side ... 84 6e-032
gb|DR694473.1|DR694473 EST1084565 Normalized pine embryo li... 85 6e-032
gb|DT638742.1|DT638742 EST1153673 Normalized pine embryo li... 85 6e-032
gb|DR052727.1|DR052727 RTCA1_6_B03.g1_A029 Roots minus calc... 82 6e-032
gb|DR685654.1|DR685654 EST1075731 Normalized pine embryo li... 85 6e-032
gb|DR161238.1|DR161238 RTFE1_10_D10.g1_A029 Roots minus iro... 82 6e-032
gb|DR014768.1|DR014768 HEAT1_51_B07.g1_A029 Root at 37 C fo... 84 8e-032
gb|DR014691.1|DR014691 HEAT1_51_B07.b1_A029 Root at 37 C fo... 84 8e-032
gb|CO367178.1|CO367178 RTK1_32_E03.g1_A029 Roots minus pota... 82 8e-032
gb|DR014928.1|DR014928 HEAT1_52_A11.g1_A029 Root at 37 C fo... 82 8e-032
gb|CO365658.1|CO365658 RTK1_18_A01.g1_A029 Roots minus pota... 82 8e-032
gb|DR117116.1|DR117116 RTMG1_4_G10.g1_A029 Roots minus magn... 81 8e-032
gb|DR011035.1|DR011035 HEAT1_3_A03.b1_A029 Root at 37 C for... 82 8e-032
gb|DR023090.1|DR023090 STRS1_55_A05.g1_A034 Shoot tip pitch... 82 8e-032
gb|CF667045.1|CF667045 RTCNT1_27_G11.g1_A029 Root control P... 84 8e-032
gb|DR017658.1|DR017658 STRS1_17_E03.g1_A034 Shoot tip pitch... 84 8e-032
gb|DR161451.1|DR161451 RTFE1_11_H03.g1_A029 Roots minus iro... 82 8e-032
gb|CF472757.1|CF472757 RTDS1_11_D09.g1_A015 Drought-stresse... 82 8e-032
gb|CF393225.1|CF393225 RTDR3_17_D12.g1_A022 Loblolly pine r... 82 8e-032
gb|DR081462.1|DR081462 RTFEPL1_29_G04.g1_A029 Roots plus ad... 79 1e-031
gb|DR059561.1|DR059561 RTNIT1_18_A02.g1_A029 Roots minus ni... 79 2e-031
gb|DR117421.1|DR117421 RTMG1_6_G12.g1_A029 Roots minus magn... 78 2e-031
gb|CX648418.1|CX648418 COLD1_28_B12.g1_A029 Root cold Pinus... 79 3e-031
gb|DR057958.1|DR057958 RTNIT1_8_G05.g1_A029 Roots minus nit... 79 3e-031
gb|DR384689.1|DR384689 RTHG1_3_H06.g1_A029 Roots plus added... 83 3e-031
gb|DR387764.1|DR387764 RTHG1_24_A11.b1_A029 Roots plus adde... 79 3e-031
gb|CF401736.1|CF401736 RTWW1_14_C05.g1_A015 Well-watered lo... 79 3e-031
gb|DR387774.1|DR387774 RTHG1_24_B11.b1_A029 Roots plus adde... 79 3e-031
gb|CF388652.1|CF388652 RTDR2_4_A10.g1_A021 Loblolly pine ro... 79 3e-031
gb|CF402623.1|CF402623 RTWW1_21_B11.g1_A015 Well-watered lo... 79 3e-031
gb|CF400460.1|CF400460 RTWW1_5_H12.g1_A015 Well-watered lob... 79 3e-031
gb|CF389081.1|CF389081 RTDR2_13_A10.g1_A021 Loblolly pine r... 79 3e-031
gb|DR384384.1|DR384384 RTHG1_1_H06.g1_A029 Roots plus added... 83 3e-031
gb|CV034082.1|CV034082 RTNACL1_38_B11.g1_A029 Roots plus ad... 79 3e-031
gb|DR178268.1|DR178268 RTMNUT1_10_C01.g1_A029 Roots minus m... 79 3e-031
gb|DR098778.1|DR098778 STRR1_47_G01.g1_A033 Stem Response R... 79 3e-031
gb|DR111427.1|DR111427 RTS1_17_F02.g1_A029 Roots minus sulf... 79 3e-031
gb|DR168212.1|DR168212 RTPHOS1_23_H12.g1_A029 Roots minus p... 79 3e-031
gb|CF397272.1|CF397272 RTDS3_2_C01.g1_A022 Drought-stressed... 79 4e-031
gb|CF395899.1|CF395899 RTDS2_19_G06.g1_A021 Drought-stresse... 79 4e-031
gb|BX680288.1|BX680288 BX680288 RS Pinus pinaster cDNA clon... 78 4e-031
gb|CF394327.1|CF394327 RTDS2_4_B08.g1_A021 Drought-stressed... 82 5e-031
gb|CF667523.1|CF667523 RTCNT1_30_H07.g1_A029 Root control P... 77 6e-031
gb|CF391408.1|CF391408 RTDR3_1_E10.g1_A022 Loblolly pine ro... 82 8e-031
gb|CF395727.1|CF395727 RTDS2_16_B07.g1_A021 Drought-stresse... 78 8e-031
gb|CF397637.1|CF397637 RTDS3_4_A07.g1_A022 Drought-stressed... 80 8e-031
gb|CF477905.1|CF477905 RTWW3_13_C03.g1_A022 Well-watered lo... 76 1e-030
gb|DR744198.1|DR744198 RTCU1_20_G08.g1_A029 Roots plus adde... 78 1e-030
gb|CF399612.1|CF399612 RTDS3_26_H01.g1_A022 Drought-stresse... 79 1e-030
gb|DR111301.1|DR111301 RTS1_16_F03.g1_A029 Roots minus sulf... 81 1e-030
gb|DR164052.1|DR164052 RTFE1_46_B11.g1_A029 Roots minus iro... 79 2e-030
gb|CO368386.1|CO368386 RTK1_40_G08.b1_A029 Roots minus pota... 76 3e-030
gb|CX646616.1|CX646616 COLD1_10_A05.g1_A029 Root cold Pinus... 76 3e-030
gb|BX784172.1|BX784172 BX784172 Pinus pinaster differenciat... 80 3e-030
gb|AY356372.1| Pinus taeda R2R3-MYB transcription factor (M... 76 4e-030
gb|DT638995.1|DT638995 EST1153926 Normalized pine embryo li... 76 4e-030
gb|DR694707.1|DR694707 EST1084799 Normalized pine embryo li... 76 4e-030
gb|DR071883.1|DR071883 RTDK1_22_E02.g1_A029 Roots, dark Pin... 76 4e-030
gb|CO163969.1|CO163969 FLD1_45_A11.b1_A029 Root flooded Pin... 82 5e-030
gb|DR167401.1|DR167401 RTPHOS1_18_C09.g1_A029 Roots minus p... 75 5e-030
gb|DR051127.1|DR051127 RTBOR1_27_G08.g1_A029 Roots plus add... 76 5e-030
gb|CF470618.1|CF470618 RTDS1_13_H10.g1_A015 Drought-stresse... 79 5e-030
gb|DR015783.1|DR015783 STRS1_5_D02.g1_A034 Shoot tip pitch ... 78 7e-030
gb|DR683171.1|DR683171 EST1073247 Normalized pine embryo li... 79 7e-030
gb|DT631296.1|DT631296 EST1146227 Normalized pine embryo li... 79 7e-030
gb|DR050898.1|DR050898 RTBOR1_26_H05.b1_A029 Roots plus add... 75 7e-030
gb|DR683172.1|DR683172 EST1073248 Normalized pine embryo li... 79 7e-030
gb|CF396041.1|CF396041 RTDS2_20_C12.g1_A021 Drought-stresse... 79 7e-030
gb|DR015700.1|DR015700 STRS1_5_D02.b1_A034 Shoot tip pitch ... 78 9e-030
gb|AY356371.1| Pinus taeda R2R3-MYB transcription factor (M... 77 2e-029
gb|DR683147.1|DR683147 EST1073223 Normalized pine embryo li... 77 2e-029
gb|DT631233.1|DT631233 EST1146164 Normalized pine embryo li... 77 2e-029
gb|BE520012.1|BE520012 NXCI_028_B03_F NXCI (Nsf Xylem Compr... 74 2e-029
gb|CO164542.1|CO164542 FLD1_48_E08.g1_A029 Root flooded Pin... 83 3e-029
gb|CO362169.1|CO362169 RTK1_1_F07.g1_A029 Roots minus potas... 75 3e-029
gb|CO176256.1|CO176256 NDL1_60_G12.g1_A029 Needles control ... 76 3e-029
gb|CF475091.1|CF475091 RTWW2_5_F10.g1_A021 Well-watered lob... 90 4e-029
gb|CO170303.1|CO170303 NDL1_13_D05.b1_A029 Needles control ... 75 5e-029
gb|AW064634.1|AW064634 ST33H05 Pine TriplEx shoot tip libra... 78 5e-029
gb|CO162411.1|CO162411 FLD1_35_D02.b1_A029 Root flooded Pin... 75 8e-029
gb|BQ634727.1|BQ634727 NXRV072_E09_F NXRV (Nsf Xylem Root w... 75 2e-028
gb|DR094442.1|DR094442 STRR1_14_D03.g1_A033 Stem Response R... 74 3e-028
gb|DR069928.1|DR069928 RTDK1_10_F06.b1_A029 Roots, dark Pin... 74 3e-028
gb|CF391868.1|CF391868 RTDR3_10_B04.g1_A022 Loblolly pine r... 74 3e-028
gb|DR072123.1|DR072123 RTDK1_24_F01.b1_A029 Roots, dark Pin... 74 3e-028
gb|AW065064.1|AW065064 ST39B10 Pine TriplEx shoot tip libra... 82 3e-028
gb|CF385274.1|CF385274 RTDR1_2_D01.g1_A015 Loblolly pine ro... 75 4e-028
gb|CO172303.1|CO172303 NDL1_28_G10.g1_A029 Needles control ... 76 1e-027
gb|CV034623.1|CV034623 RTNACL1_10_A11.g1_A029 Roots plus ad... 71 1e-027
gb|DR386238.1|DR386238 RTHG1_13_G03.g1_A029 Roots plus adde... 72 1e-027
gb|BQ290999.1|BQ290999 NXRV054_D07_F NXRV (Nsf Xylem Root w... 75 2e-027
gb|DR179654.1|DR179654 RTMNUT1_23_B05.g2_A029 Roots minus m... 75 6e-027
gb|DR015810.1|DR015810 STRS1_5_F07.g1_A034 Shoot tip pitch ... 72 9e-027
gb|DR167893.1|DR167893 RTPHOS1_21_G02.g1_A029 Roots minus p... 84 9e-027
gb|CF401126.1|CF401126 RTWW1_10_H02.b1_A015 Well-watered lo... 78 9e-027
gb|DT633531.1|DT633531 EST1148462 Normalized pine embryo li... 71 2e-026
gb|DR686108.1|DR686108 EST1076186 Normalized pine embryo li... 71 2e-026
gb|DR744906.1|DR744906 RTCU1_25_E06.g1_A029 Roots plus adde... 71 2e-026
gb|DR055413.1|DR055413 RTCA1_23_C03.g2_A029 Roots minus cal... 79 5e-026
gb|CO361388.1|CO361388 NDL2_4_C06.g1_A029 Needles control 2... 78 6e-026
gb|CF396536.1|CF396536 RTDS2_22_H07.g1_A021 Drought-stresse... 70 8e-026
gb|CF396247.1|CF396247 RTDS2_15_B11.g1_A021 Drought-stresse... 73 1e-025
gb|CO368639.1|CO368639 RTK1_41_H02.g1_A029 Roots minus pota... 67 4e-025
gb|DR101609.1|DR101609 STRR1_74_C02.g1_A033 Stem Response R... 71 8e-025
gb|DR020641.1|DR020641 STRS1_38_G12.b1_A034 Shoot tip pitch... 73 2e-024
gb|CF663690.1|CF663690 RTCNT1_4_C02.g1_A029 Root control Pi... 66 4e-024
gb|BX678005.1|BX678005 BX678005 RN Pinus pinaster cDNA clon... 87 5e-024
gb|DR111182.1|DR111182 RTS1_16_A02.b1_A029 Roots minus sulf... 65 5e-024
gb|CV035967.1|CV035967 RTNACL1_43_E10.g1_A029 Roots plus ad... 67 9e-024
gb|DT633408.1|DT633408 EST1148339 Normalized pine embryo li... 66 1e-023
gb|DR686505.1|DR686505 EST1076583 Normalized pine embryo li... 66 1e-023
gb|DR384837.1|DR384837 RTHG1_4_H08.g1_A029 Roots plus added... 64 4e-023
gb|CV033497.1|CV033497 RTNACL1_34_H05.g1_A029 Roots plus ad... 64 4e-023
gb|DR089238.1|DR089238 RTAL1_7_A05.g1_A029 Roots plus added... 64 4e-023
gb|CO173370.1|CO173370 NDL1_35_F03.g1_A029 Needles control ... 71 8e-023
gb|DR746217.1|DR746217 RTCU1_35_B06.g1_A029 Roots plus adde... 68 9e-023
gb|CO173249.1|CO173249 NDL1_35_A08.b1_A029 Needles control ... 74 1e-022
>gb|CX647457.1|CX647457 COLD1_16_B04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_16_B04_A029 5', mRNA sequence
Length = 748
Score = 95.5 bits (202), Expect(2) = 1e-038
Identities = 33/44 (75%), Positives = 38/44 (86%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YI++HG GNWRSVP+N GL RC KSCRLRWTNYLRP I+RG F+
Sbjct: 40 YIEQHGLGNWRSVPVNAGLQRCGKSCRLRWTNYLRPDIKRGKFS 171
Score = 83.5 bits (176), Expect(2) = 1e-038
Identities = 30/45 (66%), Positives = 39/45 (86%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 275
EE I+ L +LLGNRW+ IA++LP+RTDN+IKNYWNTHL+K+L K
Sbjct: 178 EEQTIIQLHALLGNRWSTIATHLPKRTDNEIKNYWNTHLRKRLLK 312
>gb|CO366297.1|CO366297 RTK1_27_B09.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_B09_A029 3', mRNA sequence
Length = 904
Score = 91.3 bits (193), Expect(2) = 2e-037
Identities = 32/44 (72%), Positives = 37/44 (84%)
Frame = +1 / -1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YI +HG GNWR++P GLMRC KSCRLRWTNYLRP I+RGNF+
Sbjct: 838 YINKHGHGNWRALPKQAGLMRCGKSCRLRWTNYLRPDIKRGNFS 707
Score = 84.0 bits (177), Expect(2) = 2e-037
Identities = 31/43 (72%), Positives = 37/43 (86%)
Frame = +3 / -1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
EE I+HL +LGNRW+AIAS+LP RTDN+IKN WNTHLKK+L
Sbjct: 700 EEQTIIHLHQILGNRWSAIASHLPGRTDNEIKNVWNTHLKKRL 572
>gb|DR167765.1|DR167765 RTPHOS1_20_H05.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_20_H05_A029 5', mRNA sequence
Length = 806
Score = 91.3 bits (193), Expect(2) = 2e-037
Identities = 32/44 (72%), Positives = 37/44 (84%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YI +HG GNWR++P GLMRC KSCRLRWTNYLRP I+RGNF+
Sbjct: 44 YINKHGHGNWRALPKQAGLMRCGKSCRLRWTNYLRPDIKRGNFS 175
Score = 84.0 bits (177), Expect(2) = 2e-037
Identities = 31/43 (72%), Positives = 37/43 (86%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
EE I+HL +LGNRW+AIAS+LP RTDN+IKN WNTHLKK+L
Sbjct: 182 EEQTIIHLHQILGNRWSAIASHLPGRTDNEIKNVWNTHLKKRL 310
>gb|CO158547.1|CO158547 FLD1_7_D03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_7_D03_A029 5', mRNA sequence
Length = 693
Score = 92.7 bits (196), Expect(2) = 3e-037
Identities = 32/45 (71%), Positives = 38/45 (84%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTP 135
YI +HG GNWR++P GL+RC KSCRLRWTNYLRP I+RGNF+P
Sbjct: 123 YITKHGHGNWRALPKQAGLLRCGKSCRLRWTNYLRPDIKRGNFSP 257
Score = 81.7 bits (172), Expect(2) = 3e-037
Identities = 31/48 (64%), Positives = 38/48 (79%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQQA 284
EE I+ L L+GNRW+ IASYLP RTDN+IKN WNTHLKK+L + +A
Sbjct: 261 EEDQIIKLHELIGNRWSTIASYLPGRTDNEIKNVWNTHLKKRLARMKA 404
>gb|CF671993.1|CF671993 RTCNT1_60_D02.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_60_D02_A029 5', mRNA sequence
Length = 557
Score = 91.3 bits (193), Expect(2) = 5e-037
Identities = 31/45 (68%), Positives = 38/45 (84%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTP 135
YI +HG GNWR++P GL+RC KSCRLRWTNYL+P I+RGNF+P
Sbjct: 101 YITKHGHGNWRALPKQAGLLRCGKSCRLRWTNYLKPDIKRGNFSP 235
Score = 81.7 bits (172), Expect(2) = 5e-037
Identities = 31/48 (64%), Positives = 38/48 (79%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQQA 284
EE I+ L L+GNRW+ IASYLP RTDN+IKN WNTHLKK+L + +A
Sbjct: 239 EEDQIIKLHELIGNRWSTIASYLPGRTDNEIKNVWNTHLKKRLARMKA 382
>gb|CF391376.1|CF391376 RTDR3_1_G04.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_G04_A022 5', mRNA
sequence
Length = 480
Score = 91.8 bits (194), Expect(2) = 9e-037
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTP 135
YIQEHG G+WR++P GL+RC KSCRLRWTNYLRP I+RG F P
Sbjct: 180 YIQEHGHGSWRALPQKAGLLRCGKSCRLRWTNYLRPDIKRGKFNP 314
Score = 80.3 bits (169), Expect(2) = 9e-037
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
EE I+ L +LLGNRW+ I + LP+RTDN+IKNYWNTHLKK+L
Sbjct: 318 EEQTIIQLHALLGNRWSTITTQLPKRTDNEIKNYWNTHLKKRL 446
>gb|AW011253.1|AW011253 ST18F02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST18F02, mRNA sequence
Length = 578
Score = 88.6 bits (187), Expect(2) = 2e-035
Identities = 31/45 (68%), Positives = 36/45 (80%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTP 135
YIQ HG G+WRS+P GL RC KSCRLRW NYLRP ++RGNF+P
Sbjct: 98 YIQAHGEGSWRSLPKAAGLQRCGKSCRLRWINYLRPDLKRGNFSP 232
Score = 79.0 bits (166), Expect(2) = 2e-035
Identities = 28/43 (65%), Positives = 37/43 (86%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ II+ L S+LGN+W+ IAS LP RTDN+IKNYWNTH+K+K+
Sbjct: 236 EDEIIIKLHSMLGNKWSLIASKLPGRTDNEIKNYWNTHIKRKM 364
>gb|CO162972.1|CO162972 FLD1_38_D09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_38_D09_A029 5', mRNA sequence
Length = 842
Score = 84.5 bits (178), Expect(2) = 3e-035
Identities = 29/44 (65%), Positives = 40/44 (90%)
Frame = +3 / +1
Query: 138 HEEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
HE+ +I+HL ++LGNRW+AIAS+LP RTDN+IKN+WNT LK++L
Sbjct: 232 HEDIVIIHLHAILGNRWSAIASHLPGRTDNEIKNHWNTRLKRQL 363
Score = 83.1 bits (175), Expect(2) = 3e-035
Identities = 30/44 (68%), Positives = 34/44 (77%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
Y+Q HG WRS+P GL RC KSCRLRWTNYLRP I+RGNF+
Sbjct: 97 YLQHHGRTKWRSLPKLAGLSRCGKSCRLRWTNYLRPDIKRGNFS 228
>gb|CF668816.1|CF668816 RTCNT1_38_G11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_38_G11_A029 5', mRNA sequence
Length = 814
Score = 82.6 bits (174), Expect(2) = 4e-034
Identities = 31/48 (64%), Positives = 37/48 (77%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQQA 284
EE +I+ L LLGNRW+ IA LP RTDN+IKNYWNTHL KKL Q++
Sbjct: 224 EEELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLSSQES 367
Score = 81.3 bits (171), Expect(2) = 4e-034
Identities = 28/45 (62%), Positives = 33/45 (73%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTP 135
Y++ HG G WR++P GL RC KSCRLRW NYLRP I+RGN P
Sbjct: 86 YVRIHGDGGWRNLPEKAGLKRCGKSCRLRWLNYLRPDIKRGNICP 220
>gb|CF667292.1|CF667292 RTCNT1_29_G02.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_29_G02_A029 3', mRNA sequence
Length = 681
Score = 82.2 bits (173), Expect(2) = 1e-033
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = +1 / -2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YI+ HG G WR++P N GLMR +KSCR+RW NYLRPGI+RGN +
Sbjct: 566 YIRIHGDGGWRNLPQNAGLMRRAKSCRIRWLNYLRPGIKRGNIS 435
Score = 79.9 bits (168), Expect(2) = 1e-033
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = +3 / -2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLK 272
EE +I+ + LLGNRW+ IA LP RTDN+IKNYWNTHL+KKL+
Sbjct: 428 EEELIIRMHRLLGNRWSLIAGRLPGRTDNEIKNYWNTHLRKKLR 297
>gb|CO361899.1|CO361899 NDL2_7_G04.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_7_G04_A029 5', mRNA sequence
Length = 871
Score = 87.2 bits (184), Expect(2) = 2e-033
Identities = 32/44 (72%), Positives = 34/44 (77%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YIQ HG GNWRS+P GL RC KSCRLRW NYLRP I+RGN T
Sbjct: 84 YIQTHGEGNWRSLPKKAGLRRCGKSCRLRWLNYLRPCIKRGNIT 215
Score = 74.4 bits (156), Expect(2) = 2e-033
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
EE +I+ + +LLGNRW+ IA +P RTDN+IKNYWNT+L KKL
Sbjct: 222 EEELIIRMHALLGNRWSIIAGRVPGRTDNEIKNYWNTNLSKKL 350
>gb|DT639133.1|DT639133 EST1154064 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHN42 3' end, mRNA sequence
Length = 857
Score = 82.6 bits (174), Expect(2) = 4e-033
Identities = 29/45 (64%), Positives = 34/45 (75%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTP 135
YI+ HG G WR++P GL RC KSCRLRW NYLRP I+RGN +P
Sbjct: 183 YIRIHGDGGWRNMPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISP 317
Score = 78.0 bits (164), Expect(2) = 4e-033
Identities = 29/43 (67%), Positives = 34/43 (79%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
EE +I+ L LLGNRW+ IA LP RTDN+IKNYWNTH+ KKL
Sbjct: 321 EEELIIRLHHLLGNRWSLIAGRLPGRTDNEIKNYWNTHMSKKL 449
>gb|DR694940.1|DR694940 EST1085033 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEI64 3' end, mRNA sequence
Length = 848
Score = 82.6 bits (174), Expect(2) = 4e-033
Identities = 29/45 (64%), Positives = 34/45 (75%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTP 135
YI+ HG G WR++P GL RC KSCRLRW NYLRP I+RGN +P
Sbjct: 175 YIRIHGDGGWRNMPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISP 309
Score = 78.0 bits (164), Expect(2) = 4e-033
Identities = 29/43 (67%), Positives = 34/43 (79%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
EE +I+ L LLGNRW+ IA LP RTDN+IKNYWNTH+ KKL
Sbjct: 313 EEELIIRLHHLLGNRWSLIAGRLPGRTDNEIKNYWNTHMSKKL 441
>gb|CX650454.1|CX650454 COLD1_45_F10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_45_F10_A029 5', mRNA sequence
Length = 826
Score = 81.7 bits (172), Expect(2) = 7e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I+ HG G WRS+P GLMRC KSCRLRW NYLRP ++RGNF+
Sbjct: 124 HIRTHGEGCWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRGNFS 255
Score = 78.0 bits (164), Expect(2) = 7e-033
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SLLGN+W+ IA LP RTDN+IKNYWNTH+K+KL
Sbjct: 262 EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 390
>gb|DR024153.1|DR024153 STRS1_62_E05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_E05_A034 5', mRNA sequence
Length = 791
Score = 81.7 bits (172), Expect(2) = 7e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I+ HG G WRS+P GLMRC KSCRLRW NYLRP ++RGNF+
Sbjct: 119 HIRTHGEGCWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRGNFS 250
Score = 78.0 bits (164), Expect(2) = 7e-033
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SLLGN+W+ IA LP RTDN+IKNYWNTH+K+KL
Sbjct: 257 EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 385
>gb|CF387084.1|CF387084 RTDR1_10_E10.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_10_E10_A015 5', mRNA
sequence
Length = 733
Score = 81.7 bits (172), Expect(2) = 7e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I+ HG G WRS+P GLMRC KSCRLRW NYLRP ++RGNF+
Sbjct: 93 HIRTHGEGCWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRGNFS 224
Score = 78.0 bits (164), Expect(2) = 7e-033
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SLLGN+W+ IA LP RTDN+IKNYWNTH+K+KL
Sbjct: 231 EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 359
>gb|DR060728.1|DR060728 RTNIT1_29_D06.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_29_D06_A029 5', mRNA sequence
Length = 726
Score = 81.7 bits (172), Expect(2) = 7e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I+ HG G WRS+P GLMRC KSCRLRW NYLRP ++RGNF+
Sbjct: 107 HIRTHGEGCWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRGNFS 238
Score = 78.0 bits (164), Expect(2) = 7e-033
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SLLGN+W+ IA LP RTDN+IKNYWNTH+K+KL
Sbjct: 245 EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 373
>gb|CF388213.1|CF388213 RTDR2_1_B07.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_1_B07_A021 5', mRNA
sequence
Length = 712
Score = 81.7 bits (172), Expect(2) = 7e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I+ HG G WRS+P GLMRC KSCRLRW NYLRP ++RGNF+
Sbjct: 135 HIRTHGEGCWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRGNFS 266
Score = 78.0 bits (164), Expect(2) = 7e-033
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SLLGN+W+ IA LP RTDN+IKNYWNTH+K+KL
Sbjct: 273 EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 401
>gb|DR111240.1|DR111240 RTS1_16_G05.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_G05_A029 3', mRNA sequence
Length = 625
Score = 81.7 bits (172), Expect(2) = 7e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / -3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I+ HG G WRS+P GLMRC KSCRLRW NYLRP ++RGNF+
Sbjct: 557 HIRTHGEGCWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRGNFS 426
Score = 78.0 bits (164), Expect(2) = 7e-033
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3 / -3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SLLGN+W+ IA LP RTDN+IKNYWNTH+K+KL
Sbjct: 419 EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 291
>gb|BX681391.1|BX681391 BX681391 RS Pinus pinaster cDNA clone RS58C06, mRNA sequence
Length = 605
Score = 81.7 bits (172), Expect(2) = 7e-033
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I+ HG G WRS+P GLMRC KSCRLRW NYLRP ++RGNF+
Sbjct: 81 HIRTHGEGCWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRGNFS 212
Score = 78.0 bits (164), Expect(2) = 7e-033
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SLLGN+W+ IA LP RTDN+IKNYWNTH+K+KL
Sbjct: 219 EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 347
>gb|BX679906.1|BX679906 BX679906 RS Pinus pinaster cDNA clone RS36A06, mRNA sequence
Length = 448
Score = 80.3 bits (169), Expect(2) = 1e-032
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I+ HG G+WRS+P GL+RC KSCRLRW NYLRP ++RG+F+
Sbjct: 118 HIEAHGEGSWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGSFS 249
Score = 77.6 bits (163), Expect(2) = 1e-032
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SLLGN+W+ IA LP RTDN+IKNYWNTH+K+KL
Sbjct: 256 EDDLIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHMKRKL 384
>gb|CO200901.1|CO200901 RTCNT2_2_G06.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_2_G06_A029 3', mRNA sequence
Length = 863
Score = 82.2 bits (173), Expect(2) = 2e-032
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / -3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I+ HG G WRS+P GL+RC KSCRLRW NYLRP I+RGNF+
Sbjct: 744 HIRAHGEGCWRSLPTAAGLLRCGKSCRLRWINYLRPDIKRGNFS 613
Score = 76.2 bits (160), Expect(2) = 2e-032
Identities = 26/43 (60%), Positives = 37/43 (86%)
Frame = +3 / -3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SL+GN+W+ IA+ LP RTDN+IKNYWN+H+K+KL
Sbjct: 606 EDELIIQLHSLIGNKWSLIAAKLPGRTDNEIKNYWNSHIKRKL 478
>gb|CO361315.1|CO361315 NDL2_4_D03.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_4_D03_A029 3', mRNA sequence
Length = 894
Score = 80.3 bits (169), Expect(2) = 2e-032
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I+ HG G+WRS+P GL+RC KSCRLRW NYLRP ++RG+F+
Sbjct: 41 HIEAHGEGSWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGSFS 172
Score = 77.6 bits (163), Expect(2) = 2e-032
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SLLGN+W+ IA LP RTDN+IKNYWNTH+K+KL
Sbjct: 179 EDDLIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHMKRKL 307
>gb|CO361397.1|CO361397 NDL2_4_D03.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_4_D03_A029 5', mRNA sequence
Length = 804
Score = 80.3 bits (169), Expect(2) = 2e-032
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I+ HG G+WRS+P GL+RC KSCRLRW NYLRP ++RG+F+
Sbjct: 47 HIEAHGEGSWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGSFS 178
Score = 77.6 bits (163), Expect(2) = 2e-032
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SLLGN+W+ IA LP RTDN+IKNYWNTH+K+KL
Sbjct: 185 EDDLIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHMKRKL 313
>gb|DR020720.1|DR020720 STRS1_38_G12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_38_G12_A034 5', mRNA sequence
Length = 688
Score = 84.9 bits (179), Expect(2) = 2e-032
Identities = 30/45 (66%), Positives = 35/45 (77%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTP 135
YI+ HG G WR++P GL RC KSCRLRWTNYLRP I+RGN +P
Sbjct: 99 YIRLHGNGGWRNLPQKAGLKRCGKSCRLRWTNYLRPDIKRGNISP 233
Score = 73.0 bits (153), Expect(2) = 2e-032
Identities = 28/42 (66%), Positives = 33/42 (78%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK 266
EE +IV ++ LLGNRW+ IA LP RTDN+IKNYWNT L KK
Sbjct: 237 EEDLIVRMRRLLGNRWSLIAGRLPGRTDNEIKNYWNTRLSKK 362
>gb|CO198121.1|CO198121 GEO1_11_A02.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_11_A02_A029 5', mRNA sequence
Length = 667
Score = 80.3 bits (169), Expect(2) = 2e-032
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I+ HG G+WRS+P GL+RC KSCRLRW NYLRP ++RG+F+
Sbjct: 54 HIEAHGEGSWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGSFS 185
Score = 77.6 bits (163), Expect(2) = 2e-032
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SLLGN+W+ IA LP RTDN+IKNYWNTH+K+KL
Sbjct: 192 EDDLIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHMKRKL 320
>gb|BF517838.1|BF517838 NXSI_027_G09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_027_G09 5' similar to Arabidopsis thaliana
sequence At4g38620 putative transcription factor (MYB4)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 494
Score = 78.5 bits (165), Expect(2) = 3e-032
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SLLGN+W+ IA LP RTDN+IKNYWNTH+K+KL
Sbjct: 312 EDELIIKLHSLLGNKWSLIAXXLPGRTDNEIKNYWNTHIKRKL 440
Score = 78.5 bits (165), Expect(2) = 3e-032
Identities = 28/42 (66%), Positives = 33/42 (78%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGN 126
+I+ HG G WRS+P GLMRC KSCRLRW NYLRP ++RGN
Sbjct: 174 HIRTHGEGCWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRGN 299
>gb|DR110104.1|DR110104 RTS1_8_C03.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_8_C03_A029 5', mRNA sequence
Length = 538
Score = 87.2 bits (184), Expect(2) = 3e-032
Identities = 32/44 (72%), Positives = 34/44 (77%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YIQ HG GNWRS+P GL RC KSCRLRW NYLRP I+RGN T
Sbjct: 278 YIQTHGEGNWRSLPKKAGLRRCGKSCRLRWLNYLRPCIKRGNIT 409
Score = 69.8 bits (146), Expect(2) = 3e-032
Identities = 24/41 (58%), Positives = 33/41 (80%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 263
EE +I+ + +LLGNRW+ IA +P RTDN++KNYWNT+L K
Sbjct: 416 EEELIIRMHALLGNRWSIIAGRVPGRTDNEVKNYWNTNLSK 538
>gb|DR161095.1|DR161095 RTFE1_9_G03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_9_G03_A029 5', mRNA sequence
Length = 760
Score = 81.3 bits (171), Expect(2) = 3e-032
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I+ HG G WRS+P GL+RC KSCRLRW NYLRP I+RGNF+
Sbjct: 131 HIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDIKRGNFS 262
Score = 76.2 bits (160), Expect(2) = 3e-032
Identities = 26/43 (60%), Positives = 37/43 (86%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SL+GN+W+ IA+ LP RTDN+IKNYWN+H+K+KL
Sbjct: 269 EDELIIQLHSLIGNKWSLIAAKLPGRTDNEIKNYWNSHIKRKL 397
>gb|DR079932.1|DR079932 RTFEPL1_18_F11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_18_F11_A029 5', mRNA sequence
Length = 689
Score = 83.1 bits (175), Expect(2) = 3e-032
Identities = 29/44 (65%), Positives = 34/44 (77%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YIQ HG G W S+P GL+RC KSCRLRW NYLRP ++RGNF+
Sbjct: 42 YIQAHGEGGWNSLPKAAGLLRCGKSCRLRWMNYLRPQLKRGNFS 173
Score = 74.4 bits (156), Expect(2) = 3e-032
Identities = 27/43 (62%), Positives = 36/43 (83%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L +LLGN+W+ IA LP RTDN+IKNYWN+HLK+KL
Sbjct: 180 EDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRKL 308
>gb|CF669490.1|CF669490 RTCNT1_44_A10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_44_A10_A029 3', mRNA sequence
Length = 655
Score = 83.1 bits (175), Expect(2) = 3e-032
Identities = 29/44 (65%), Positives = 34/44 (77%)
Frame = +1 / -2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YIQ HG G W S+P GL+RC KSCRLRW NYLRP ++RGNF+
Sbjct: 570 YIQTHGEGGWNSLPKAAGLLRCGKSCRLRWMNYLRPQLKRGNFS 439
Score = 74.4 bits (156), Expect(2) = 3e-032
Identities = 27/43 (62%), Positives = 36/43 (83%)
Frame = +3 / -2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L +LLGN+W+ IA LP RTDN+IKNYWN+HLK+KL
Sbjct: 432 EDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRKL 304
>gb|CN852309.1|CN852309 Pi148-1 Salicylate-treated slash pine seedlings Pinus elliottii
cDNA, mRNA sequence
Length = 270
Score = 81.3 bits (171), Expect(2) = 4e-032
Identities = 28/44 (63%), Positives = 35/44 (79%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I+ HG G WRS+P GL+RC KSCRLRW NYLRP ++RG+FT
Sbjct: 7 HIRAHGEGGWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGSFT 138
Score = 74.4 bits (156), Expect(2) = 4e-032
Identities = 26/42 (61%), Positives = 34/42 (80%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK 266
E+ +I+ L S +GN+W+ IA LP RTDN+IKNYWNTH+KKK
Sbjct: 145 EDELIIKLHSFVGNKWSLIAGRLPGRTDNEIKNYWNTHIKKK 270
>gb|DR163874.1|DR163874 RTFE1_45_A12.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_45_A12_A029 5', mRNA sequence
Length = 896
Score = 83.1 bits (175), Expect(2) = 5e-032
Identities = 29/44 (65%), Positives = 34/44 (77%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YIQ HG G WR +P GL+RC KSCRLRW NYLRP ++RGNF+
Sbjct: 41 YIQAHGEGGWRYLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFS 172
Score = 73.9 bits (155), Expect(2) = 5e-032
Identities = 26/43 (60%), Positives = 36/43 (83%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SLLGN+W+ IA+ + RTDN+IKNYWNTH+K+KL
Sbjct: 179 EDELIIKLHSLLGNKWSLIAARMAGRTDNEIKNYWNTHIKRKL 307
>gb|CO201585.1|CO201585 RTCNT2_6_F07.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_6_F07_A029 5', mRNA sequence
Length = 859
Score = 83.1 bits (175), Expect(2) = 5e-032
Identities = 29/44 (65%), Positives = 34/44 (77%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YIQ HG G WR +P GL+RC KSCRLRW NYLRP ++RGNF+
Sbjct: 12 YIQAHGEGGWRYLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFS 143
Score = 73.9 bits (155), Expect(2) = 5e-032
Identities = 26/43 (60%), Positives = 36/43 (83%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L SLLGN+W+ IA+ + RTDN+IKNYWNTH+K+KL
Sbjct: 150 EDELIIKLHSLLGNKWSLIAARMAGRTDNEIKNYWNTHIKRKL 278
>gb|DR058733.1|DR058733 RTNIT1_13_C07.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_13_C07_A029 5', mRNA sequence
Length = 592
Score = 81.7 bits (172), Expect(2) = 5e-032
Identities = 29/45 (64%), Positives = 34/45 (75%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTP 135
YI+ HG G WRS+P GL RC KSCRLRW NYLRP I+RG+ +P
Sbjct: 113 YIRIHGDGGWRSLPKKAGLKRCGKSCRLRWLNYLRPDIKRGDISP 247
Score = 75.3 bits (158), Expect(2) = 5e-032
Identities = 29/43 (67%), Positives = 33/43 (76%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
EE +I+ L LLGNRW+ IA LP RTDN+IKNYWNT L KKL
Sbjct: 251 EEELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTRLSKKL 379
>gb|AW065119.1|AW065119 ST39H05 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST39H05, mRNA sequence
Length = 586
Score = 81.3 bits (171), Expect(2) = 5e-032
Identities = 29/45 (64%), Positives = 34/45 (75%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFTP 135
YI+ HG G WRS+P GL RC KSCRLRW NYLRP I+RG+ +P
Sbjct: 156 YIRIHGDGGWRSLPKKAGLKRCGKSCRLRWLNYLRPDIKRGDVSP 290
Score = 75.3 bits (158), Expect(2) = 5e-032
Identities = 29/43 (67%), Positives = 33/43 (76%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
EE +I+ L LLGNRW+ IA LP RTDN+IKNYWNT L KKL
Sbjct: 294 EEELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTRLSKKL 422
>gb|DR099337.1|DR099337 STRR1_54_G08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_54_G08_A033 5', mRNA sequence
Length = 499
Score = 81.7 bits (172), Expect(2) = 5e-032
Identities = 29/44 (65%), Positives = 34/44 (77%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YIQ HG G WRS+P GL+RC KSCRLRW NYLRP ++RG F+
Sbjct: 72 YIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGGFS 203
Score = 74.4 bits (156), Expect(2) = 5e-032
Identities = 27/43 (62%), Positives = 36/43 (83%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L +LLGN+W+ IA LP RTDN+IKNYWN+HLK+KL
Sbjct: 210 EDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRKL 338
>gb|BQ701670.1|BQ701670 NXSI_118_C02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_118_C02 5' similar to Arabidopsis thaliana
sequence At4g38620 putative transcription factor (MYB4)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 549
Score = 83.5 bits (176), Expect(2) = 6e-032
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+IQ HG G WRS+P GL+RC KSCRLRW NYLRP ++RGNF+
Sbjct: 107 HIQAHGEGGWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFS 238
Score = 72.5 bits (152), Expect(2) = 6e-032
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ S LGN+W+ IA LP RTDN+IKN+WNTH+KKKL
Sbjct: 245 EDELIIKFHSRLGNKWSLIARILPGRTDNEIKNHWNTHIKKKL 373
>gb|DR694473.1|DR694473 EST1084565 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC94 3' end, mRNA sequence
Length = 822
Score = 84.9 bits (179), Expect(2) = 6e-032
Identities = 31/45 (68%), Positives = 39/45 (86%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 275
EE +I+ L S LGNRW+ IA++LP RTDN+IKNYWNTH+KKKLK+
Sbjct: 300 EEQLIIDLHSQLGNRWSKIAAHLPGRTDNEIKNYWNTHIKKKLKR 434
Score = 71.6 bits (150), Expect(2) = 6e-032
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRG 123
+I HG WR+VP GL+RC KSCRLRWTNYLRP ++RG
Sbjct: 162 FILNHGHCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRG 284
>gb|DT638742.1|DT638742 EST1153673 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHI92 3' end, mRNA sequence
Length = 822
Score = 84.9 bits (179), Expect(2) = 6e-032
Identities = 31/45 (68%), Positives = 39/45 (86%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 275
EE +I+ L S LGNRW+ IA++LP RTDN+IKNYWNTH+KKKLK+
Sbjct: 308 EEQLIIDLHSQLGNRWSKIAAHLPGRTDNEIKNYWNTHIKKKLKR 442
Score = 71.6 bits (150), Expect(2) = 6e-032
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRG 123
+I HG WR+VP GL+RC KSCRLRWTNYLRP ++RG
Sbjct: 170 FILNHGHCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRG 292
>gb|DR052727.1|DR052727 RTCA1_6_B03.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_6_B03_A029 5', mRNA sequence
Length = 801
Score = 81.7 bits (172), Expect(2) = 6e-032
Identities = 28/44 (63%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I+ HG G WRS+P GLMRC KSC+LRW NYLRP ++RGNF+
Sbjct: 14 HIRAHGEGGWRSLPKAAGLMRCGKSCKLRWINYLRPDLKRGNFS 145
Score = 74.8 bits (157), Expect(2) = 6e-032
Identities = 27/43 (62%), Positives = 36/43 (83%)
Frame = +3 / +2
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L+SLLGN+W+ IA L RTDN+IKNYWNTH+K+KL
Sbjct: 152 EDELIIKLRSLLGNKWSLIAGRLSWRTDNEIKNYWNTHIKRKL 280
>gb|DR685654.1|DR685654 EST1075731 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB633 3' end, mRNA sequence
Length = 786
Score = 84.9 bits (179), Expect(2) = 6e-032
Identities = 31/45 (68%), Positives = 39/45 (86%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 275
EE +I+ L S LGNRW+ IA++LP RTDN+IKNYWNTH+KKKLK+
Sbjct: 247 EEQLIIDLHSQLGNRWSKIAAHLPGRTDNEIKNYWNTHIKKKLKR 381
Score = 71.6 bits (150), Expect(2) = 6e-032
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRG 123
+I HG WR+VP GL+RC KSCRLRWTNYLRP ++RG
Sbjct: 109 FILNHGHCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRG 231
>gb|DR161238.1|DR161238 RTFE1_10_D10.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_D10_A029 5', mRNA sequence
Length = 766
Score = 81.7 bits (172), Expect(2) = 6e-032
Identities = 28/44 (63%), Positives = 36/44 (81%)
Frame = +1 / +3
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I+ HG G+WRS+P GL+RC KSCRLRW NYLRP ++RG+FT
Sbjct: 102 HIRAHGEGSWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGSFT 233
Score = 74.8 bits (157), Expect(2) = 6e-032
Identities = 26/43 (60%), Positives = 35/43 (81%)
Frame = +3 / +3
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L S +GN+W+ IA LP RTDN+IKNYWNTH+K+KL
Sbjct: 240 EDELIIKLHSFVGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 368
>gb|DR014768.1|DR014768 HEAT1_51_B07.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_B07_A029 5', mRNA sequence
Length = 928
Score = 83.5 bits (176), Expect(2) = 8e-032
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+IQ HG G WRS+P GL+RC KSCRLRW NYLRP ++RGNF+
Sbjct: 118 HIQAHGEGGWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFS 249
Score = 72.5 bits (152), Expect(2) = 8e-032
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ S LGN+W+ IA LP RTDN+IKN+WNTH+KKKL
Sbjct: 256 EDELIIKFHSRLGNKWSLIARILPGRTDNEIKNHWNTHIKKKL 384
>gb|DR014691.1|DR014691 HEAT1_51_B07.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_B07_A029 3', mRNA sequence
Length = 906
Score = 83.5 bits (176), Expect(2) = 8e-032
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+IQ HG G WRS+P GL+RC KSCRLRW NYLRP ++RGNF+
Sbjct: 67 HIQAHGEGGWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFS 198
Score = 72.5 bits (152), Expect(2) = 8e-032
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ S LGN+W+ IA LP RTDN+IKN+WNTH+KKKL
Sbjct: 205 EDELIIKFHSRLGNKWSLIARILPGRTDNEIKNHWNTHIKKKL 333
>gb|CO367178.1|CO367178 RTK1_32_E03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_E03_A029 5', mRNA sequence
Length = 873
Score = 81.7 bits (172), Expect(2) = 8e-032
Identities = 29/44 (65%), Positives = 34/44 (77%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YIQ HG G WRS+P GL+RC KSCRLRW NYLRP ++RG F+
Sbjct: 97 YIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGGFS 228
Score = 74.4 bits (156), Expect(2) = 8e-032
Identities = 27/43 (62%), Positives = 36/43 (83%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L +LLGN+W+ IA LP RTDN+IKNYWN+HLK+KL
Sbjct: 235 EDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRKL 363
>gb|DR014928.1|DR014928 HEAT1_52_A11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_52_A11_A029 5', mRNA sequence
Length = 854
Score = 81.7 bits (172), Expect(2) = 8e-032
Identities = 29/44 (65%), Positives = 34/44 (77%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YIQ HG G WRS+P GL+RC KSCRLRW NYLRP ++RG F+
Sbjct: 46 YIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGGFS 177
Score = 74.4 bits (156), Expect(2) = 8e-032
Identities = 27/43 (62%), Positives = 36/43 (83%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L +LLGN+W+ IA LP RTDN+IKNYWN+HLK+KL
Sbjct: 184 EDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRKL 312
>gb|CO365658.1|CO365658 RTK1_18_A01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_18_A01_A029 5', mRNA sequence
Length = 812
Score = 81.7 bits (172), Expect(2) = 8e-032
Identities = 29/44 (65%), Positives = 34/44 (77%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YIQ HG G WRS+P GL+RC KSCRLRW NYLRP ++RG F+
Sbjct: 43 YIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGGFS 174
Score = 74.4 bits (156), Expect(2) = 8e-032
Identities = 27/43 (62%), Positives = 36/43 (83%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L +LLGN+W+ IA LP RTDN+IKNYWN+HLK+KL
Sbjct: 181 EDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRKL 309
>gb|DR117116.1|DR117116 RTMG1_4_G10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_4_G10_A029 5', mRNA sequence
Length = 805
Score = 81.3 bits (171), Expect(2) = 8e-032
Identities = 28/44 (63%), Positives = 35/44 (79%)
Frame = +1 / +1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
+I+ HG G WRS+P GL+RC KSCRLRW NYLRP ++RG+FT
Sbjct: 103 HIRAHGEGGWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGSFT 234
Score = 74.8 bits (157), Expect(2) = 8e-032
Identities = 26/43 (60%), Positives = 35/43 (81%)
Frame = +3 / +1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L S +GN+W+ IA LP RTDN+IKNYWNTH+K+KL
Sbjct: 241 EDELIIKLHSFVGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 369
>gb|DR011035.1|DR011035 HEAT1_3_A03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_3_A03_A029 3', mRNA sequence
Length = 790
Score = 81.7 bits (172), Expect(2) = 8e-032
Identities = 29/44 (65%), Positives = 34/44 (77%)
Frame = +1 / -1
Query: 1 YIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIRRGNFT 132
YIQ HG G WRS+P GL+RC KSCRLRW NYLRP ++RG F+
Sbjct: 700 YIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGGFS 569
Score = 74.4 bits (156), Expect(2) = 8e-032
Identities = 27/43 (62%), Positives = 36/43 (83%)
Frame = +3 / -1
Query: 141 EEAIIVHLQSLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 269
E+ +I+ L +LLGN+W+ IA LP RTDN+IKNYWN+HLK+KL
Sbjct: 562 EDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRKL 434
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 124,639,944
Number of Sequences: 355925
Number of extensions: 1214478
Number of successful extensions: 41625
Number of sequences better than 1.0e-020: 173
length of database: 72,425,745
effective HSP length: 50
effective length of database: 54,629,495
effective search space used: 4588877580
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)