TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010745.2.1
(805 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX712929.1|CX712929 RTPQ1_5_F12.g1_A032 Roots treated wi... 102 4e-039
gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA... 103 7e-039
gb|BX250956.1|BX250956 BX250956 Pinus pinaster differenciat... 101 6e-033
gb|DR014803.1|DR014803 HEAT1_51_E12.g1_A029 Root at 37 C fo... 100 5e-032
gb|AW042637.1|AW042637 ST24C01 Pine TriplEx shoot tip libra... 98 2e-030
gb|CO162371.1|CO162371 FLD1_34_H05.g1_A029 Root flooded Pin... 102 1e-029
gb|DR080921.1|DR080921 RTFEPL1_26_D08.b1_A029 Roots plus ad... 102 1e-029
gb|DR743165.1|DR743165 RTCU1_14_B08.b1_A029 Roots plus adde... 73 1e-028
gb|DR685831.1|DR685831 EST1075908 Normalized pine embryo li... 55 2e-028
gb|CF668848.1|CF668848 RTCNT1_39_C01.b1_A029 Root control P... 102 3e-028
gb|BX679902.1|BX679902 BX679902 RS Pinus pinaster cDNA clon... 101 7e-028
gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calc... 110 5e-027
gb|DR164307.1|DR164307 RTFE1_48_D09.b1_A029 Roots minus iro... 110 5e-027
gb|DR019596.1|DR019596 STRS1_31_D05.b1_A034 Shoot tip pitch... 110 5e-027
gb|DR052378.1|DR052378 RTCA1_4_F07.b1_A029 Roots minus calc... 110 5e-027
gb|DR019640.1|DR019640 STRS1_31_H11.b1_A034 Shoot tip pitch... 110 5e-027
gb|DR019670.1|DR019670 STRS1_31_D05.g1_A034 Shoot tip pitch... 110 5e-027
gb|DR055729.1|DR055729 RTCA1_25_C02.g1_A029 Roots minus cal... 110 5e-027
gb|CF477622.1|CF477622 RTWW3_9_B03.b1_A022 Well-watered lob... 110 5e-027
gb|CF390726.1|CF390726 RTDR2_17_D05.g1_A021 Loblolly pine r... 90 5e-027
gb|DR094103.1|DR094103 STRR1_12_B03.g1_A033 Stem Response R... 110 2e-026
gb|DR093835.1|DR093835 STRR1_10_E06.g1_A033 Stem Response R... 110 2e-026
gb|DR081506.1|DR081506 RTFEPL1_30_D11.b1_A029 Roots plus ad... 110 4e-026
gb|CO158951.1|CO158951 FLD1_10_G08.b1_A029 Root flooded Pin... 106 2e-025
gb|DR024579.1|DR024579 STRS1_66_A03.b1_A034 Shoot tip pitch... 111 5e-024
gb|DR013586.1|DR013586 HEAT1_20_F02.b1_A029 Root at 37 C fo... 110 1e-023
gb|CO199421.1|CO199421 GEO2_1_C06.b1_A032 Root gravitropism... 76 1e-023
gb|DR744663.1|DR744663 RTCU1_24_B09.b1_A029 Roots plus adde... 78 1e-022
gb|CX652294.1|CX652294 COLD1_58_E05.b1_A029 Root cold Pinus... 106 2e-022
gb|DR111231.1|DR111231 RTS1_16_F03.b1_A029 Roots minus sulf... 106 2e-022
gb|CO361958.1|CO361958 NDL2_8_E08.b1_A029 Needles control 2... 84 3e-022
gb|DR013536.1|DR013536 HEAT1_19_H11.g1_A029 Root at 37 C fo... 77 4e-022
gb|DR078735.1|DR078735 RTFEPL1_6_C01.g1_A029 Roots plus add... 90 1e-021
gb|DR078654.1|DR078654 RTFEPL1_6_C01.b1_A029 Roots plus add... 90 1e-021
gb|CF671905.1|CF671905 RTCNT1_60_C07.b1_A029 Root control P... 102 4e-021
gb|DR048711.1|DR048711 RTBOR1_10_E10.g1_A029 Roots plus add... 87 5e-021
gb|CO162287.1|CO162287 FLD1_34_H05.b1_A029 Root flooded Pin... 48 1e-020
>gb|CX712929.1|CX712929 RTPQ1_5_F12.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_5_F12_A032 5', mRNA sequence
Length = 836
Score = 102 bits (217), Expect(4) = 4e-039
Identities = 36/69 (52%), Positives = 56/69 (81%)
Frame = -2 / +3
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLY 226
S ++ +E ++DVRR + ++YL+ A++NG++VRGYFVW+LLDNFEWAFGY +++GLY
Sbjct: 390 SSSTLQENLNDVRRIRFHGDCLSYLTAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLY 569
Query: 225 HVDFDTQER 199
HVDF + ++
Sbjct: 570 HVDFISDQK 596
Score = 47.8 bits (98), Expect(4) = 4e-039
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -2 / +3
Query: 543 GVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
GV IG T + G F VP I+ ++YV Y + ITENGY + ++S
Sbjct: 246 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESEESS 395
Score = 35.9 bits (72), Expect(4) = 4e-039
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -2 / +3
Query: 762 ILGDYPGAMREILGSDLPTFTAEEKALL 679
+ GDYP MRE LGS LP+ ++E A L
Sbjct: 30 VFGDYPQEMRERLGSRLPSISSELSAKL 113
Score = 31.8 bits (63), Expect(4) = 4e-039
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2 / +3
Query: 699 AEEKALLLRYKADFIGLNHYTAIYA 625
+ E + LR D++G+NHYT +YA
Sbjct: 90 SSELSAKLRGSFDYMGINHYTTLYA 164
>gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA, complete cds
Length = 1909
Score = 103 bits (220), Expect(4) = 7e-039
Identities = 37/69 (53%), Positives = 56/69 (81%)
Frame = -2 / +3
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLY 226
S ++ +E ++DVRR + ++YLS A++NG++VRGYFVW+LLDNFEWAFGY +++GLY
Sbjct: 1431 SSSTLQENLNDVRRIRFHGDCLSYLSAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLY 1610
Query: 225 HVDFDTQER 199
HVDF + ++
Sbjct: 1611 HVDFISDQK 1637
Score = 45.5 bits (93), Expect(4) = 7e-039
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -2 / +3
Query: 543 GVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
GV IG T + G F VP I+ ++YV Y + I ENGY + ++S
Sbjct: 1287 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIIAENGYPESEESS 1436
Score = 35.9 bits (72), Expect(4) = 7e-039
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -2 / +3
Query: 762 ILGDYPGAMREILGSDLPTFTAEEKALL 679
+ GDYP MRE LGS LP+ ++E A L
Sbjct: 1071 VFGDYPQEMRERLGSRLPSISSELSAKL 1154
Score = 31.8 bits (63), Expect(4) = 7e-039
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2 / +3
Query: 699 AEEKALLLRYKADFIGLNHYTAIYA 625
+ E + LR D++G+NHYT +YA
Sbjct: 1131 SSELSAKLRGSFDYMGINHYTTLYA 1205
>gb|BX250956.1|BX250956 BX250956 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP043D06, mRNA sequence
Length = 675
Score = 101 bits (215), Expect(3) = 6e-033
Identities = 36/69 (52%), Positives = 55/69 (79%)
Frame = -2 / +2
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLY 226
S ++ +E + DVRR + ++YL+ A++NG++VRGYFVW+LLDNFEWAFGY +++GLY
Sbjct: 275 SSSTLQENLSDVRRIRFHGDCLSYLTAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLY 454
Query: 225 HVDFDTQER 199
HVDF + ++
Sbjct: 455 HVDFISAQK 481
Score = 48.7 bits (100), Expect(3) = 6e-033
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = -2 / +2
Query: 543 GVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
GV IG TA+ G F VP I+ ++YV Y + ITENGY + ++S
Sbjct: 131 GVSIGERTAMDGLFVVPHGIQKIVEYVKEFYDNPIIIITENGYPESEESS 280
Score = 29.0 bits (57), Expect(3) = 6e-033
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -2 / +2
Query: 663 DFIGLNHYTAIYA 625
D++G+NHYT +YA
Sbjct: 11 DYMGINHYTTLYA 49
>gb|DR014803.1|DR014803 HEAT1_51_E12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_E12_A029 5', mRNA sequence
Length = 858
Score = 100 bits (213), Expect(3) = 5e-032
Identities = 35/64 (54%), Positives = 53/64 (82%)
Frame = -2 / -3
Query: 390 EELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFD 211
+E ++DVRR + ++YL+ A++NG++VRGYFVW+LLDNFEWAFGY +++GLYHVDF
Sbjct: 577 QENLNDVRRIRFHGDCLSYLTAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFI 398
Query: 210 TQER 199
+ ++
Sbjct: 397 SDQK 386
Score = 46.4 bits (95), Expect(3) = 5e-032
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -2 / -3
Query: 543 GVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
GV IG T + G F VP I+ ++YV Y + ITENGY + + S
Sbjct: 736 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESQEFS 587
Score = 29.0 bits (57), Expect(3) = 5e-032
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -2 / -3
Query: 663 DFIGLNHYTAIYA 625
D++G+NHYT +YA
Sbjct: 856 DYMGINHYTTLYA 818
>gb|AW042637.1|AW042637 ST24C01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST24C01, mRNA sequence
Length = 567
Score = 98.2 bits (208), Expect(3) = 2e-030
Identities = 35/64 (54%), Positives = 52/64 (81%)
Frame = -2 / +3
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLY 226
S ++ +E ++DVRR + ++YL+ A++NG++VRGYFVW+LLDNFEWAFGY +++GLY
Sbjct: 264 SSSTLQENLNDVRRIRFHGDCLSYLNAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLY 443
Query: 225 HVDF 214
HV F
Sbjct: 444 HVGF 455
Score = 47.8 bits (98), Expect(3) = 2e-030
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -2 / +3
Query: 543 GVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
GV IG T + G F VP I+ ++YV Y + ITENGY + ++S
Sbjct: 120 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESEESS 269
Score = 24.4 bits (47), Expect(3) = 2e-030
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -2 / +3
Query: 654 GLNHYTAIYA 625
G+NHYT +YA
Sbjct: 9 GINHYTTLYA 38
>gb|CO162371.1|CO162371 FLD1_34_H05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_H05_A029 5', mRNA sequence
Length = 738
Score = 102 bits (217), Expect(2) = 1e-029
Identities = 36/69 (52%), Positives = 56/69 (81%)
Frame = -2 / -3
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLY 226
S ++ +E ++DVRR + ++YL+ A++NG++VRGYFVW+LLDNFEWAFGY +++GLY
Sbjct: 580 SSSTLQENLNDVRRIRFHGDCLSYLNAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLY 401
Query: 225 HVDFDTQER 199
HVDF + ++
Sbjct: 400 HVDFISDQK 374
Score = 47.8 bits (98), Expect(2) = 1e-029
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -2 / -3
Query: 543 GVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
GV IG T + G F VP I+ ++YV Y + ITENGY + ++S
Sbjct: 724 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESEESS 575
>gb|DR080921.1|DR080921 RTFEPL1_26_D08.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_26_D08_A029 3', mRNA sequence
Length = 707
Score = 102 bits (217), Expect(2) = 1e-029
Identities = 36/69 (52%), Positives = 56/69 (81%)
Frame = -2 / +2
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLY 226
S ++ +E ++DVRR + ++YL+ A++NG++VRGYFVW+LLDNFEWAFGY +++GLY
Sbjct: 233 SSSTLQENLNDVRRIRFHGDCLSYLNAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLY 412
Query: 225 HVDFDTQER 199
HVDF + ++
Sbjct: 413 HVDFISDQK 439
Score = 47.8 bits (98), Expect(2) = 1e-029
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -2 / +2
Query: 543 GVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
GV IG T + G F VP I+ ++YV Y + ITENGY + ++S
Sbjct: 89 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESEESS 238
>gb|DR743165.1|DR743165 RTCU1_14_B08.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_14_B08_A029 3', mRNA sequence
Length = 761
Score = 73.0 bits (153), Expect(4) = 1e-028
Identities = 28/59 (47%), Positives = 42/59 (71%)
Frame = -2 / +2
Query: 387 ELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFD 211
E ++D R + Q + Y+ A+RNG++VRGYF+WTLLD+FE GY +GL++VDF+
Sbjct: 380 EALNDQFRMDLHQDVLQYVLAAIRNGSDVRGYFIWTLLDDFEVLDGYTRSFGLHYVDFN 556
Score = 42.3 bits (86), Expect(4) = 1e-028
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = -2 / +2
Query: 762 ILGDYPGAMREILGSDLPTFTAEE 691
+ GDYPG+MR I+GS LP+FT E+
Sbjct: 8 VSGDYPGSMRNIVGSRLPSFTKEQ 79
Score = 35.9 bits (72), Expect(4) = 1e-028
Identities = 11/42 (26%), Positives = 27/42 (64%)
Frame = -2 / +2
Query: 519 ALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
+ +G VP++++ A++Y+ R P+ + ENG+ + +++S
Sbjct: 242 SFSGMPVVPQSMQAALEYIEDRSHNIPIIVYENGFSEHNNSS 367
Score = 30.9 bits (61), Expect(4) = 1e-028
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2 / +2
Query: 696 EEKALLLRYKADFIGLNHYTAIYARDCLR 610
+E+ L+ DFIG+NHY IY D R
Sbjct: 71 KEQTQKLQGSLDFIGVNHYFTIYCFDVPR 157
>gb|DR685831.1|DR685831 EST1075908 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB853 3' end, mRNA sequence
Length = 526
Score = 55.1 bits (114), Expect(5) = 2e-028
Identities = 18/25 (72%), Positives = 23/25 (92%)
Frame = -2 / +3
Query: 312 GANVRGYFVWTLLDNFEWAFGYRLK 238
G++VRGYFVW+LLD FEWAFGY ++
Sbjct: 450 GSDVRGYFVWSLLDKFEWAFGYTIR 524
Score = 47.8 bits (98), Expect(5) = 2e-028
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -2 / +2
Query: 543 GVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
GV IG T + G F VP I+ ++YV Y + ITENGY + ++S
Sbjct: 212 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESEESS 361
Score = 34.5 bits (69), Expect(5) = 2e-028
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -2 / +1
Query: 756 GDYPGAMREILGSDLPTFTAEEKALL 679
GDYP MRE LGS LP+ ++E A L
Sbjct: 1 GDYPQEMRERLGSRLPSISSELSAKL 78
Score = 31.8 bits (63), Expect(5) = 2e-028
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2 / +1
Query: 699 AEEKALLLRYKADFIGLNHYTAIYA 625
+ E + LR D++G+NHYT +YA
Sbjct: 55 SSELSAKLRGSFDYMGINHYTTLYA 129
Score = 29.0 bits (57), Expect(5) = 2e-028
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = -2 / +2
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNG 310
S ++ +E ++DVRR + ++YL+ A++NG
Sbjct: 356 SSSTLQENLNDVRRIRFHGDCLSYLNAAIKNG 451
>gb|CF668848.1|CF668848 RTCNT1_39_C01.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_39_C01_A029 3', mRNA sequence
Length = 737
Score = 102 bits (217), Expect(2) = 3e-028
Identities = 36/69 (52%), Positives = 56/69 (81%)
Frame = -2 / +1
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLY 226
S ++ +E ++DVRR + ++YL+ A++NG++VRGYFVW+LLDNFEWAFGY +++GLY
Sbjct: 136 SSSTLQENLNDVRRIRFHGDCLSYLNAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLY 315
Query: 225 HVDFDTQER 199
HVDF + ++
Sbjct: 316 HVDFISDQK 342
Score = 43.2 bits (88), Expect(2) = 3e-028
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = -2 / +1
Query: 534 IGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
IG T + G F VP I+ ++YV Y + ITENGY + ++S
Sbjct: 1 IGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESEESS 141
>gb|BX679902.1|BX679902 BX679902 RS Pinus pinaster cDNA clone RS35H05, mRNA sequence
Length = 578
Score = 101 bits (216), Expect(2) = 7e-028
Identities = 36/69 (52%), Positives = 55/69 (79%)
Frame = -2 / +2
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLY 226
S ++ +E + DVRR + ++YL+ A++NG++VRGYFVW+LLDNFEWAFGY +++GLY
Sbjct: 134 SSSTLQENLSDVRRIRFHGDCLSYLTAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLY 313
Query: 225 HVDFDTQER 199
HVDF + ++
Sbjct: 314 HVDFISDQK 340
Score = 42.3 bits (86), Expect(2) = 7e-028
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = -2 / +2
Query: 531 GGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
G TA+ G F VP I+ ++YV Y + ITENGY + ++S
Sbjct: 2 GERTAMDGLFVVPHGIQKIVEYVKEFYDNPIIIITENGYPESEESS 139
>gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F07_A029 5', mRNA sequence
Length = 932
Score = 110 bits (235), Expect(2) = 5e-027
Identities = 48/129 (37%), Positives = 71/129 (55%)
Frame = -2 / +1
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV IG + VP + A+ YV Y + ++ENG + + ++D
Sbjct: 487 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLPAGLNDTI 666
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R NY + Y+ L A+ +GANV GYF W+LLDNFEW GY ++G+ +VDF T +R +M
Sbjct: 667 RVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTTLKRYPKM 846
Query: 186 SARWYQGFL 160
SA W+ L
Sbjct: 847 SAYWFSKLL 873
Score = 30.9 bits (61), Expect(2) = 5e-027
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -2 / +1
Query: 696 EEKALLLRYKADFIGLNHYTAIYARDCLRSPCNLGSYE 583
+E++ +++ D++G+N YTA Y D + N+ Y+
Sbjct: 340 KEQSQMVKGSIDYLGVNQYTAYYMYDPKQPKQNVTDYQ 453
>gb|DR164307.1|DR164307 RTFE1_48_D09.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_48_D09_A029 3', mRNA sequence
Length = 868
Score = 110 bits (235), Expect(2) = 5e-027
Identities = 48/129 (37%), Positives = 71/129 (55%)
Frame = -2 / +3
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV IG + VP + A+ YV Y + ++ENG + + ++D
Sbjct: 357 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLPAGLNDTI 536
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R NY + Y+ L A+ +GANV GYF W+LLDNFEW GY ++G+ +VDF T +R +M
Sbjct: 537 RVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTTLKRYPKM 716
Query: 186 SARWYQGFL 160
SA W+ L
Sbjct: 717 SAYWFSKLL 743
Score = 30.9 bits (61), Expect(2) = 5e-027
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -2 / +3
Query: 696 EEKALLLRYKADFIGLNHYTAIYARDCLRSPCNLGSYE 583
+E++ +++ D++G+N YTA Y D + N+ Y+
Sbjct: 210 KEQSQMVKGSIDYLGVNQYTAYYMYDPKQPKQNVTDYQ 323
>gb|DR019596.1|DR019596 STRS1_31_D05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_D05_A034 3', mRNA sequence
Length = 865
Score = 110 bits (235), Expect(2) = 5e-027
Identities = 48/129 (37%), Positives = 71/129 (55%)
Frame = -2 / -1
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV IG + VP + A+ YV Y + ++ENG + + ++D
Sbjct: 514 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLPAGLNDTI 335
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R NY + Y+ L A+ +GANV GYF W+LLDNFEW GY ++G+ +VDF T +R +M
Sbjct: 334 RVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTTLKRYPKM 155
Query: 186 SARWYQGFL 160
SA W+ L
Sbjct: 154 SAYWFSKLL 128
Score = 30.9 bits (61), Expect(2) = 5e-027
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -2 / -1
Query: 696 EEKALLLRYKADFIGLNHYTAIYARDCLRSPCNLGSYE 583
+E++ +++ D++G+N YTA Y D + N+ Y+
Sbjct: 661 KEQSQMVKGSIDYLGVNQYTAYYMYDPKQPKQNVTDYQ 548
>gb|DR052378.1|DR052378 RTCA1_4_F07.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F07_A029 3', mRNA sequence
Length = 865
Score = 110 bits (235), Expect(2) = 5e-027
Identities = 48/129 (37%), Positives = 71/129 (55%)
Frame = -2 / +1
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV IG + VP + A+ YV Y + ++ENG + + ++D
Sbjct: 346 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLPAGLNDTI 525
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R NY + Y+ L A+ +GANV GYF W+LLDNFEW GY ++G+ +VDF T +R +M
Sbjct: 526 RVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTTLKRYPKM 705
Query: 186 SARWYQGFL 160
SA W+ L
Sbjct: 706 SAYWFSKLL 732
Score = 30.9 bits (61), Expect(2) = 5e-027
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -2 / +1
Query: 696 EEKALLLRYKADFIGLNHYTAIYARDCLRSPCNLGSYE 583
+E++ +++ D++G+N YTA Y D + N+ Y+
Sbjct: 199 KEQSQMVKGSIDYLGVNQYTAYYMYDPKQPKQNVTDYQ 312
>gb|DR019640.1|DR019640 STRS1_31_H11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_H11_A034 3', mRNA sequence
Length = 794
Score = 110 bits (235), Expect(2) = 5e-027
Identities = 48/129 (37%), Positives = 71/129 (55%)
Frame = -2 / +2
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV IG + VP + A+ YV Y + ++ENG + + ++D
Sbjct: 275 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLPAGLNDTI 454
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R NY + Y+ L A+ +GANV GYF W+LLDNFEW GY ++G+ +VDF T +R +M
Sbjct: 455 RVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTTLKRYPKM 634
Query: 186 SARWYQGFL 160
SA W+ L
Sbjct: 635 SAYWFSKLL 661
Score = 30.9 bits (61), Expect(2) = 5e-027
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -2 / +2
Query: 696 EEKALLLRYKADFIGLNHYTAIYARDCLRSPCNLGSYE 583
+E++ +++ D++G+N YTA Y D + N+ Y+
Sbjct: 128 KEQSQMVKGSIDYLGVNQYTAYYMYDPKQPKQNVTDYQ 241
>gb|DR019670.1|DR019670 STRS1_31_D05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_D05_A034 5', mRNA sequence
Length = 756
Score = 110 bits (235), Expect(2) = 5e-027
Identities = 48/129 (37%), Positives = 71/129 (55%)
Frame = -2 / -1
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV IG + VP + A+ YV Y + ++ENG + + ++D
Sbjct: 486 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLPAGLNDTI 307
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R NY + Y+ L A+ +GANV GYF W+LLDNFEW GY ++G+ +VDF T +R +M
Sbjct: 306 RVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTTLKRYPKM 127
Query: 186 SARWYQGFL 160
SA W+ L
Sbjct: 126 SAYWFSKLL 100
Score = 30.9 bits (61), Expect(2) = 5e-027
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -2 / -1
Query: 696 EEKALLLRYKADFIGLNHYTAIYARDCLRSPCNLGSYE 583
+E++ +++ D++G+N YTA Y D + N+ Y+
Sbjct: 633 KEQSQMVKGSIDYLGVNQYTAYYMYDPKQPKQNVTDYQ 520
>gb|DR055729.1|DR055729 RTCA1_25_C02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_25_C02_A029 5', mRNA sequence
Length = 687
Score = 110 bits (235), Expect(2) = 5e-027
Identities = 48/129 (37%), Positives = 71/129 (55%)
Frame = -2 / -3
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV IG + VP + A+ YV Y + ++ENG + + ++D
Sbjct: 487 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLPAGLNDTI 308
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R NY + Y+ L A+ +GANV GYF W+LLDNFEW GY ++G+ +VDF T +R +M
Sbjct: 307 RVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTTLKRYPKM 128
Query: 186 SARWYQGFL 160
SA W+ L
Sbjct: 127 SAYWFSKLL 101
Score = 30.9 bits (61), Expect(2) = 5e-027
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -2 / -3
Query: 696 EEKALLLRYKADFIGLNHYTAIYARDCLRSPCNLGSYE 583
+E++ +++ D++G+N YTA Y D + N+ Y+
Sbjct: 634 KEQSQMVKGSIDYLGVNQYTAYYMYDPKQPKQNVTDYQ 521
>gb|CF477622.1|CF477622 RTWW3_9_B03.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_9_B03_A022 3', mRNA sequence
Length = 667
Score = 110 bits (235), Expect(2) = 5e-027
Identities = 48/129 (37%), Positives = 71/129 (55%)
Frame = -2 / +1
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV IG + VP + A+ YV Y + ++ENG + + ++D
Sbjct: 148 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLPAGLNDTI 327
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R NY + Y+ L A+ +GANV GYF W+LLDNFEW GY ++G+ +VDF T +R +M
Sbjct: 328 RVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTTLKRYPKM 507
Query: 186 SARWYQGFL 160
SA W+ L
Sbjct: 508 SAYWFSKLL 534
Score = 30.9 bits (61), Expect(2) = 5e-027
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -2 / +1
Query: 696 EEKALLLRYKADFIGLNHYTAIYARDCLRSPCNLGSYE 583
+E++ +++ D++G+N YTA Y D + N+ Y+
Sbjct: 1 KEQSQMVKGSIDYLGVNQYTAYYMYDPKQPKQNVTDYQ 114
>gb|CF390726.1|CF390726 RTDR2_17_D05.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_17_D05_A021 5', mRNA
sequence
Length = 796
Score = 89.5 bits (189), Expect(3) = 5e-027
Identities = 32/60 (53%), Positives = 46/60 (76%)
Frame = -2 / +2
Query: 390 EELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFD 211
EE + D RR Y +++YL +A+R GA+VRGY VW+LLDNFEWA GY ++GLY++D++
Sbjct: 317 EEALHDSRRVEYHSQHLSYLLEAIREGADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYN 496
Score = 47.3 bits (97), Expect(3) = 5e-027
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -2 / +2
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
+GV +G D ++ F P + I Y RY P+YITE GY + + +
Sbjct: 155 NGVYLGSDEGVSAFRSYPAGLRDVINYTKHRYNNPPIYITETGYADFDNGT 307
Score = 22.1 bits (42), Expect(3) = 5e-027
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2 / +2
Query: 699 AEEKALLLRYKADFIGLNHYT 637
+ E+A L+ DF+G N+Y+
Sbjct: 2 SSEEAKDLKGSFDFLGFNYYS 64
>gb|DR094103.1|DR094103 STRR1_12_B03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_B03_A033 5', mRNA sequence
Length = 864
Score = 110 bits (235), Expect(2) = 2e-026
Identities = 48/129 (37%), Positives = 71/129 (55%)
Frame = -2 / -1
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV IG + VP + A+ YV Y + ++ENG + + ++D
Sbjct: 462 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLPAGLNDTI 283
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R NY + Y+ L A+ +GANV GYF W+LLDNFEW GY ++G+ +VDF T +R +M
Sbjct: 282 RVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTTLKRYPKM 103
Query: 186 SARWYQGFL 160
SA W+ L
Sbjct: 102 SAYWFSKLL 76
Score = 29.0 bits (57), Expect(2) = 2e-026
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = -2 / -1
Query: 696 EEKALLLRYKADFIGLNHYTAIYARDCLRSPCNLGSYE 583
++++ +++ D++G+N YTA Y D + N+ Y+
Sbjct: 609 KKQSQMVKGSIDYLGVNQYTAYYMYDPKQPKQNVTDYQ 496
>gb|DR093835.1|DR093835 STRR1_10_E06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_10_E06_A033 5', mRNA sequence
Length = 788
Score = 110 bits (235), Expect(2) = 2e-026
Identities = 48/129 (37%), Positives = 71/129 (55%)
Frame = -2 / -1
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV IG + VP + A+ YV Y + ++ENG + + ++D
Sbjct: 503 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLPAGLNDTI 324
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R NY + Y+ L A+ +GANV GYF W+LLDNFEW GY ++G+ +VDF T +R +M
Sbjct: 323 RVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTTLKRYPKM 144
Query: 186 SARWYQGFL 160
SA W+ L
Sbjct: 143 SAYWFSKLL 117
Score = 29.0 bits (57), Expect(2) = 2e-026
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = -2 / -1
Query: 696 EEKALLLRYKADFIGLNHYTAIYARDCLRSPCNLGSYE 583
++++ +++ D++G+N YTA Y D + N+ Y+
Sbjct: 650 KKQSQMVKGSIDYLGVNQYTAYYMYDPKQPKQNVTDYQ 537
>gb|DR081506.1|DR081506 RTFEPL1_30_D11.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_30_D11_A029 3', mRNA sequence
Length = 761
Score = 110 bits (235), Expect(2) = 4e-026
Identities = 48/129 (37%), Positives = 71/129 (55%)
Frame = -2 / +2
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV IG + VP + A+ YV Y + ++ENG + + ++D
Sbjct: 122 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLPAGLNDTI 301
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R NY + Y+ L A+ +GANV GYF W+LLDNFEW GY ++G+ +VDF T +R +M
Sbjct: 302 RVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTTLKRYPKM 481
Query: 186 SARWYQGFL 160
SA W+ L
Sbjct: 482 SAYWFSKLL 508
Score = 27.6 bits (54), Expect(2) = 4e-026
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2 / +2
Query: 663 DFIGLNHYTAIYARDCLRSPCNLGSYE 583
D++G+N YTA Y D + N+ Y+
Sbjct: 8 DYLGVNQYTAYYMYDPKQPKQNVTDYQ 88
>gb|CO158951.1|CO158951 FLD1_10_G08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_G08_A029 3', mRNA sequence
Length = 716
Score = 106 bits (226), Expect(2) = 2e-025
Identities = 38/73 (52%), Positives = 52/73 (71%)
Frame = -2 / -1
Query: 375 DVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERT 196
D R N++ Y+ + KA+RNGAN+RGYF W+ LDNFEWAFGY ++GL HVD+ T +RT
Sbjct: 326 DTTRINFIHDYLVEIHKAMRNGANLRGYFYWSFLDNFEWAFGYSKRFGLIHVDYRTHKRT 147
Query: 195 XRMSARWYQGFLT 157
+ SA W+ +T
Sbjct: 146 PKASAYWFCTVMT 108
Score = 31.8 bits (63), Expect(2) = 2e-025
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -2 / -1
Query: 681 LLRYKADFIGLNHYTAIYA 625
LL+ +DF GLNHY++ YA
Sbjct: 680 LLKNSSDFFGLNHYSSSYA 624
>gb|DR024579.1|DR024579 STRS1_66_A03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_A03_A034 3', mRNA sequence
Length = 605
Score = 111 bits (238), Expect = 5e-024
Identities = 48/129 (37%), Positives = 72/129 (55%)
Frame = -2 / +2
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV IG + VP + A+ YV Y + ++ENG + + ++D
Sbjct: 80 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLPAGLNDTI 259
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R NY + Y+ L A+ +GANV GYF W+LLDNFEW GY ++G+ +VDF T++R +M
Sbjct: 260 RVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTTRKRYPKM 439
Query: 186 SARWYQGFL 160
SA W+ L
Sbjct: 440 SAYWFSKLL 466
>gb|DR013586.1|DR013586 HEAT1_20_F02.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_F02_A029 3', mRNA sequence
Length = 740
Score = 110 bits (235), Expect = 1e-023
Identities = 48/129 (37%), Positives = 71/129 (55%)
Frame = -2 / +1
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV IG + VP + A+ YV Y + ++ENG + + ++D
Sbjct: 82 NGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLPAGLNDTI 261
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRM 187
R NY + Y+ L A+ +GANV GYF W+LLDNFEW GY ++G+ +VDF T +R +M
Sbjct: 262 RVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTTLKRYPKM 441
Query: 186 SARWYQGFL 160
SA W+ L
Sbjct: 442 SAYWFSKLL 468
>gb|CO199421.1|CO199421 GEO2_1_C06.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_1_C06_A032 3', mRNA sequence
Length = 870
Score = 76.2 bits (160), Expect(3) = 1e-023
Identities = 24/59 (40%), Positives = 43/59 (72%)
Frame = -2 / +3
Query: 390 EELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDF 214
+ ++D R Y ++++L ++++ GA+VRGY W+L+D+FEW+ GY ++GLYHVD+
Sbjct: 354 QRALNDSGRLKYHSEHLSHLLQSIKEGADVRGYIAWSLMDSFEWSSGYNYRFGLYHVDY 530
Score = 47.8 bits (98), Expect(3) = 1e-023
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -2 / +3
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
+GV IG D ++ F P + I Y RY P+YITE GY + + +
Sbjct: 192 NGVYIGSDEGVSDFRSYPAGLRDVINYTKHRYNNPPIYITETGYADFDNGT 344
Score = 23.5 bits (45), Expect(3) = 1e-023
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2 / +3
Query: 693 EKALLLRYKADFIGLNHYTAIY 628
++A L+ DF+G N+YT Y
Sbjct: 45 KEAKELKGSFDFLGYNYYTTQY 110
>gb|DR744663.1|DR744663 RTCU1_24_B09.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_B09_A029 3', mRNA sequence
Length = 727
Score = 77.6 bits (163), Expect(2) = 1e-022
Identities = 24/59 (40%), Positives = 44/59 (74%)
Frame = -2 / +1
Query: 390 EELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDF 214
+ ++D R Y ++++L ++++ GA+VRGY +W+L+D+FEW+ GY ++GLYHVD+
Sbjct: 268 QRALNDSGRLKYHSEHLSHLLQSIKEGADVRGYIIWSLMDSFEWSSGYNYRFGLYHVDY 444
Score = 49.2 bits (101), Expect(2) = 1e-022
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -2 / +1
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
+GV IG D ++ F P + I Y+ RY P+YITE GY + + +
Sbjct: 106 NGVYIGSDEGVSDFRSYPAGLRDVINYIKHRYNNPPIYITETGYADFDNGT 258
>gb|CX652294.1|CX652294 COLD1_58_E05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_58_E05_A029 3', mRNA sequence
Length = 502
Score = 106 bits (227), Expect = 2e-022
Identities = 44/113 (38%), Positives = 65/113 (57%)
Frame = -2 / +3
Query: 498 VPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSKAL 319
VP + A+ YV Y + ++ENG + + ++D R NY + Y+ L A+
Sbjct: 33 VPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLPAGLNDTIRVNYYKSYLQNLINAV 212
Query: 318 RNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
+GANV GYF W+LLDNFEW GY ++G+ +VDF T +R +MSA W+ L
Sbjct: 213 NDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTTLKRYPKMSAYWFSKLL 371
>gb|DR111231.1|DR111231 RTS1_16_F03.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_F03_A029 3', mRNA sequence
Length = 628
Score = 106 bits (227), Expect = 2e-022
Identities = 44/113 (38%), Positives = 65/113 (57%)
Frame = -2 / +3
Query: 498 VPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSKAL 319
VP + A+ YV Y + ++ENG + + ++D R NY + Y+ L A+
Sbjct: 18 VPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLPAGLNDTIRVNYYKSYLQNLINAV 197
Query: 318 RNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
+GANV GYF W+LLDNFEW GY ++G+ +VDF T +R +MSA W+ L
Sbjct: 198 NDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTTLKRYPKMSAYWFSKLL 356
>gb|CO361958.1|CO361958 NDL2_8_E08.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E08_A029 3', mRNA sequence
Length = 786
Score = 84.0 bits (177), Expect(2) = 3e-022
Identities = 29/59 (49%), Positives = 45/59 (76%)
Frame = -2 / +2
Query: 390 EELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDF 214
E+ ++D RR Y +++ L +A+ GA++RGY VW+LLDNFEW+FGY ++GLY+VD+
Sbjct: 272 EQALNDSRRVMYHSEHLSELLEAISEGADIRGYLVWSLLDNFEWSFGYTYRFGLYYVDY 448
Score = 41.4 bits (84), Expect(2) = 3e-022
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2 / +2
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSD 400
DGV IG ++ + P ++ I Y RY +Y+TE GY + D
Sbjct: 110 DGVYIGSVEGVSTYRSYPAGLKDIINYTKHRYNNPTIYVTETGYVDFDD 256
>gb|DR013536.1|DR013536 HEAT1_19_H11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_19_H11_A029 5', mRNA sequence
Length = 729
Score = 77.1 bits (162), Expect(2) = 4e-022
Identities = 24/59 (40%), Positives = 43/59 (72%)
Frame = -2 / -2
Query: 390 EELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDF 214
+ ++D R Y ++++L + ++ GA+VRGY +W+L+D+FEW+ GY ++GLYHVD+
Sbjct: 467 QRALNDSGRLKYHSEHLSHLLQGIKEGADVRGYIIWSLMDSFEWSSGYNYRFGLYHVDY 291
Score = 47.8 bits (98), Expect(2) = 4e-022
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -2 / -2
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
+GV IG D ++ F P + I Y RY P+YITE GY + + +
Sbjct: 629 NGVYIGSDEGVSDFRSYPAGLRGVINYTKHRYNNPPIYITETGYADFDNGT 477
>gb|DR078735.1|DR078735 RTFEPL1_6_C01.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_6_C01_A029 5', mRNA sequence
Length = 770
Score = 89.5 bits (189), Expect(2) = 1e-021
Identities = 32/60 (53%), Positives = 46/60 (76%)
Frame = -2 / +3
Query: 390 EELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFD 211
EE + D RR Y +++YL +A+R GA+VRGY VW+LLDNFEWA GY ++GLY++D++
Sbjct: 111 EEALHDSRRVEYHSQHLSYLLEAIREGADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYN 290
Score = 33.6 bits (67), Expect(2) = 1e-021
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2 / +3
Query: 474 IQYVNGRYKGTPVYITENGYXQWSDAS 394
I Y RY P+YITE GY + + +
Sbjct: 21 INYTKHRYNNPPIYITETGYADFDNGT 101
>gb|DR078654.1|DR078654 RTFEPL1_6_C01.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_6_C01_A029 3', mRNA sequence
Length = 734
Score = 89.5 bits (189), Expect(2) = 1e-021
Identities = 32/60 (53%), Positives = 46/60 (76%)
Frame = -2 / +3
Query: 390 EELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFD 211
EE + D RR Y +++YL +A+R GA+VRGY VW+LLDNFEWA GY ++GLY++D++
Sbjct: 105 EEALHDSRRVEYHSQHLSYLLEAIREGADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYN 284
Score = 33.6 bits (67), Expect(2) = 1e-021
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2 / +3
Query: 474 IQYVNGRYKGTPVYITENGYXQWSDAS 394
I Y RY P+YITE GY + + +
Sbjct: 15 INYTKHRYNNPPIYITETGYADFDNGT 95
>gb|CF671905.1|CF671905 RTCNT1_60_C07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_60_C07_A029 3', mRNA sequence
Length = 612
Score = 102 bits (217), Expect = 4e-021
Identities = 36/69 (52%), Positives = 56/69 (81%)
Frame = -2 / +2
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLY 226
S ++ +E ++DVRR + ++YL+ A++NG++VRGYFVW+LLDNFEWAFGY +++GLY
Sbjct: 32 SSSTLQENLNDVRRIRFHGDCLSYLTAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLY 211
Query: 225 HVDFDTQER 199
HVDF + ++
Sbjct: 212 HVDFISDQK 238
>gb|DR048711.1|DR048711 RTBOR1_10_E10.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_10_E10_A029 5', mRNA sequence
Length = 667
Score = 87.2 bits (184), Expect(2) = 5e-021
Identities = 29/59 (49%), Positives = 45/59 (76%)
Frame = -2 / +3
Query: 390 EELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDF 214
++ ++D +R NY +GY+ L++A+R GA+VRGYF W+L+DNFEW GY ++GL VD+
Sbjct: 165 DQALNDTKRVNYFKGYLKALAEAIREGADVRGYFAWSLIDNFEWGQGYTKRFGLVFVDY 341
Score = 34.1 bits (68), Expect(2) = 5e-021
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2 / +3
Query: 543 GVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENG 418
G IG A + VP ++++ RY P+Y+TENG
Sbjct: 6 GNTIGERAASEWLYIVPWGFRKVLKWLTERYNRPPIYVTENG 131
>gb|CO162287.1|CO162287 FLD1_34_H05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_H05_A029 3', mRNA sequence
Length = 718
Score = 47.8 bits (98), Expect(4) = 1e-020
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -2 / -3
Query: 543 GVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
GV IG T + G F VP I+ ++YV Y + ITENGY + ++S
Sbjct: 260 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESEESS 111
Score = 39.1 bits (79), Expect(4) = 1e-020
Identities = 14/31 (45%), Positives = 24/31 (77%)
Frame = -2 / -2
Query: 381 IDDVRRKNYLQGYITYLSKALRNGANVRGYF 289
++DVRR + ++YL+ A++NG++VRGYF
Sbjct: 93 LNDVRRIRFHGDCLSYLNAAIKNGSDVRGYF 1
Score = 35.9 bits (72), Expect(4) = 1e-020
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -2 / -3
Query: 762 ILGDYPGAMREILGSDLPTFTAEEKALL 679
+ GDYP MRE LGS LP+ ++E A L
Sbjct: 476 VFGDYPQEMRERLGSRLPSISSELSAKL 393
Score = 31.8 bits (63), Expect(4) = 1e-020
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2 / -3
Query: 699 AEEKALLLRYKADFIGLNHYTAIYA 625
+ E + LR D++G+NHYT +YA
Sbjct: 416 SSELSAKLRGSFDYMGINHYTTLYA 342
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 357,304,917
Number of Sequences: 355925
Number of extensions: 4248579
Number of successful extensions: 29867
Number of sequences better than 1.0e-020: 42
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 11592293675
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)