TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010496.2.1
(1046 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX255589.1|BX255589 BX255589 Pinus pinaster differenciat... 247 1e-078
gb|CF479877.1|CF479877 RTWW3_12_D09.g1_A022 Well-watered lo... 237 2e-077
gb|BV079723.1| Pp_Korrigan Pinus pinaster megagametophytes ... 146 9e-070
gb|DR119504.1|DR119504 RTMG1_23_E02.g1_A029 Roots minus mag... 201 8e-067
gb|DR096991.1|DR096991 STRR1_31_E11.g1_A033 Stem Response R... 245 1e-066
gb|DR078499.1|DR078499 RTFEPL1_5_C10.b1_A029 Roots plus add... 245 1e-066
gb|CF479037.1|CF479037 RTWW3_21_G11.g1_A022 Well-watered lo... 210 3e-065
gb|AW870019.1|AW870019 NXNV_123_B02_F Nsf Xylem Normal wood... 193 2e-064
gb|BX680640.1|BX680640 BX680640 RS Pinus pinaster cDNA clon... 232 3e-063
gb|CX652902.1|CX652902 COLD1_62_E09.b1_A029 Root cold Pinus... 227 3e-061
gb|BQ699769.1|BQ699769 NXRV128_G04_F NXRV (Nsf Xylem Root w... 232 5e-060
gb|BX679935.1|BX679935 BX679935 RS Pinus pinaster cDNA clon... 172 3e-058
gb|DR169132.1|DR169132 RTPHOS1_30_F09.b1_A029 Roots minus p... 216 6e-058
gb|BG625807.1|BG625807 NXPV_066_C10_F NXPV (Nsf Xylem Plani... 216 6e-058
gb|BQ698529.1|BQ698529 NXPV_071_A11_F NXPV (Nsf Xylem Plani... 216 6e-058
gb|DR744307.1|DR744307 RTCU1_21_D02.g1_A029 Roots plus adde... 197 3e-052
gb|CV032797.1|CV032797 RTNACL1_18_H11.b1_A029 Roots plus ad... 196 3e-049
gb|BQ654431.1|BQ654431 NXRV080_B12_F NXRV (Nsf Xylem Root w... 179 8e-047
gb|CX648273.1|CX648273 COLD1_27_D03.g1_A029 Root cold Pinus... 169 6e-044
gb|BF010621.1|BF010621 NXCI_087_A08_F NXCI (Nsf Xylem Compr... 175 6e-043
gb|DR096719.1|DR096719 STRR1_29_G07.g1_A033 Stem Response R... 163 3e-042
gb|CO172739.1|CO172739 NDL1_31_C08.g1_A029 Needles control ... 153 5e-039
gb|AW290720.1|AW290720 NXNV046B09F Nsf Xylem Normal wood Ve... 153 5e-039
gb|CD027383.1|CD027383 NXNV046B09 Nsf Xylem Normal wood Ver... 153 5e-039
gb|CO361699.1|CO361699 NDL2_6_B04.g1_A029 Needles control 2... 149 8e-038
gb|DR385816.1|DR385816 RTHG1_11_C03.b1_A029 Roots plus adde... 146 5e-037
gb|DR078575.1|DR078575 RTFEPL1_5_C10.g1_A029 Roots plus add... 131 1e-032
gb|CV033821.1|CV033821 RTNACL1_36_G06.g1_A029 Roots plus ad... 131 1e-032
gb|BE187088.1|BE187088 NXNV_155_C08_F Nsf Xylem Normal wood... 137 2e-031
gb|DR020418.1|DR020418 STRS1_36_G05.g1_A034 Shoot tip pitch... 127 3e-031
gb|DR051556.1|DR051556 RTBOR1_30_H04.g1_A029 Roots plus add... 127 3e-031
gb|DR164313.1|DR164313 RTFE1_48_E03.b1_A029 Roots minus iro... 125 1e-030
gb|CF667382.1|CF667382 RTCNT1_29_H05.g1_A029 Root control P... 125 1e-030
gb|DR167591.1|DR167591 RTPHOS1_19_F11.g1_A029 Roots minus p... 88 4e-030
gb|DR167508.1|DR167508 RTPHOS1_19_F11.b1_A029 Roots minus p... 88 6e-030
gb|AW985166.1|AW985166 NXNV_133_G09_F Nsf Xylem Normal wood... 75 3e-029
gb|BQ699374.1|BQ699374 NXRV126_H08_F NXRV (Nsf Xylem Root w... 85 1e-026
gb|BQ701766.1|BQ701766 NXSI_120_D02_F NXSI (Nsf Xylem Side ... 73 5e-026
gb|DR683407.1|DR683407 EST1073483 Normalized pine embryo li... 69 1e-025
gb|U76725.1|PRU76725 Pinus radiata endo-beta-1,4-glucanase ... 82 2e-025
gb|BX255006.1|BX255006 BX255006 Pinus pinaster differenciat... 105 1e-024
gb|DT631580.1|DT631580 EST1146511 Normalized pine embryo li... 68 5e-024
gb|DR683696.1|DR683696 EST1073772 Normalized pine embryo li... 68 5e-024
gb|CV035007.1|CV035007 RTNACL1_13_B12.b1_A029 Roots plus ad... 73 1e-023
gb|CO370530.1|CO370530 RTK1_68_B06.g1_A029 Roots minus pota... 78 1e-023
gb|BX678371.1|BX678371 BX678371 RS Pinus pinaster cDNA clon... 75 1e-023
gb|DR099221.1|DR099221 STRR1_54_B05.b1_A033 Stem Response R... 78 3e-023
gb|BX682244.2|BX682244 BX682244 Pinus pinaster differenciat... 99 8e-023
gb|U76756.1|PRU76756 Pinus radiata endo-beta-1,4-glucanase ... 79 1e-022
gb|DR072510.1|DR072510 RTDK1_26_F03.g1_A029 Roots, dark Pin... 78 2e-022
gb|DR695212.1|DR695212 EST1085305 Normalized pine embryo li... 72 2e-022
gb|CO368436.1|CO368436 RTK1_40_D07.g1_A029 Roots minus pota... 64 5e-022
gb|DR057721.1|DR057721 RTNIT1_7_A06.g1_A029 Roots minus nit... 77 5e-022
gb|CO365053.1|CO365053 RTK1_23_H06.b1_A029 Roots minus pota... 77 5e-022
gb|DR014982.1|DR014982 HEAT1_52_F11.g1_A029 Root at 37 C fo... 77 5e-022
gb|CO363825.1|CO363825 RTK1_12_B11.b1_A029 Roots minus pota... 77 5e-022
gb|CO365142.1|CO365142 RTK1_23_H06.g1_A029 Roots minus pota... 77 5e-022
gb|DR167697.1|DR167697 RTPHOS1_20_B02.g1_A029 Roots minus p... 77 5e-022
gb|CO172882.1|CO172882 NDL1_32_B09.g1_A029 Needles control ... 77 5e-022
gb|DR161469.1|DR161469 RTFE1_12_A09.b1_A029 Roots minus iro... 77 5e-022
gb|DR018974.1|DR018974 STRS1_27_C02.b1_A034 Shoot tip pitch... 77 5e-022
gb|DR018984.1|DR018984 STRS1_27_D02.b1_A034 Shoot tip pitch... 77 5e-022
gb|CO363908.1|CO363908 RTK1_12_B11.g1_A029 Roots minus pota... 77 5e-022
gb|CF663920.1|CF663920 RTCNT1_6_B08.b1_A029 Root control Pi... 77 5e-022
gb|DR167624.1|DR167624 RTPHOS1_20_B02.b1_A029 Roots minus p... 77 5e-022
gb|DR070193.1|DR070193 RTDK1_11_G12.g1_A029 Roots, dark Pin... 77 5e-022
gb|DR020253.1|DR020253 STRS1_35_D09.g1_A034 Shoot tip pitch... 77 5e-022
gb|DR161544.1|DR161544 RTFE1_12_A09.g1_A029 Roots minus iro... 77 5e-022
gb|CF668810.1|CF668810 RTCNT1_38_G04.g1_A029 Root control P... 77 5e-022
gb|DR101611.1|DR101611 STRR1_74_C04.g1_A033 Stem Response R... 77 5e-022
gb|DR099637.1|DR099637 STRR1_57_B05.b1_A033 Stem Response R... 77 9e-021
>gb|BX255589.1|BX255589 BX255589 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007E03 similar to ENDOGLUCANASE PRECURSOR,
mRNA sequence
Length = 693
Score = 247 bits (533), Expect(3) = 1e-078
Identities = 94/151 (62%), Positives = 114/151 (75%)
Frame = -3 / +3
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
+GG+ NHGR QPLQYV +FLAA+Y+DY+ A ++PGW CGPNF +T LR+FAR+QI
Sbjct: 132 RGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQI 311
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGG 388
NYILG NP KMSYVVG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN++ G
Sbjct: 312 NYILGKNPMKMSYVVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVG 491
Query: 387 AMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
AMV GPDK D F D R T +GNAG
Sbjct: 492 AMVAGPDKRDMFHDVRTNYNYTEPTLAGNAG 584
Score = 135 bits (289), Expect(3) = 2e-037
Identities = 67/137 (48%), Positives = 75/137 (54%)
Frame = +2 / -3
Query: 335 VLRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLL 514
++R S S LSGP TMAP LG LSRH PP+ Y G+DAPR CTC G L
Sbjct: 544 LVRTSWNISRLSGPATMAPTITLGLGLGLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WL 365
Query: 515 PNPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELAT 694
P PTT*LIF+G PR+* I* A SR V+ KFGPQ+QPG RK
Sbjct: 364 PYPTT*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAAVK*SL*TAARKAAFA 185
Query: 695 TYCSGCPLPWLKSAIPP 745
TYC G LPW PP
Sbjct: 184 TYCRGWGLPWFS*IKPP 134
Score = 57.4 bits (119), Expect(3) = 1e-078
Identities = 21/39 (53%), Positives = 25/39 (64%)
Frame = -2 / +3
Query: 859 MFLNPGYPYXXSLAGYHNATSLNMCMYFPGFAAFNFTXG 743
+FL+PGYPY L YHN T++ MC Y P F FN T G
Sbjct: 21 LFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRG 137
Score = 33.6 bits (67), Expect(3) = 2e-037
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +3 / -3
Query: 750 VKLKAAKPGKYMHMLRLVALW*PASXXSYG*PGLR 854
V LK K G+Y H+ LV L * SYG PGL+
Sbjct: 130 VLLKVRKTGRYEHITILVWL**LCKTSSYGYPGLK 26
Score = 29.0 bits (57), Expect(3) = 1e-078
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 630 IDKNTMFSAVPPMFP 674
Score = 25.8 bits (50), Expect(3) = 2e-037
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / -3
Query: 195 GTLCGTAENMVFLS 236
G + GTAEN+VFLS
Sbjct: 673 GNMGGTAENIVFLS 632
>gb|CF479877.1|CF479877 RTWW3_12_D09.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_12_D09_A022 5', mRNA sequence
Length = 700
Score = 237 bits (511), Expect(2) = 2e-077
Identities = 88/136 (64%), Positives = 108/136 (79%)
Frame = -3 / +1
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
+GG+ NHGR QPLQYV +FLAA+Y+DY+ A ++PGW CGPNF +T LR+FAR+QI
Sbjct: 277 RGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQI 456
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGG 388
NYILG NP KMSY+VG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN++ G
Sbjct: 457 NYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVG 636
Query: 387 AMVGGPDKNDGFKDSR 340
AMV GPDK D F D R
Sbjct: 637 AMVAGPDKRDMFHDVR 684
Score = 132 bits (283), Expect(2) = 2e-034
Identities = 66/137 (48%), Positives = 74/137 (54%)
Frame = +2 / -3
Query: 335 VLRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLL 514
++R S S LSGP TMAP LG LSRH PP+ Y G+DAPR CTC G L
Sbjct: 689 LVRTSWNISRLSGPATMAPTITLGLGLGLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WL 510
Query: 515 PNPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELAT 694
P PT *LIF+G PR+* I* A SR V+ KFGPQ+QPG RK
Sbjct: 509 PYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAAVK*SL*TAARKAAFA 330
Query: 695 TYCSGCPLPWLKSAIPP 745
TYC G LPW PP
Sbjct: 329 TYCRGWGLPWFS*IKPP 279
Score = 73.9 bits (155), Expect(2) = 2e-077
Identities = 30/61 (49%), Positives = 35/61 (57%)
Frame = -2 / +1
Query: 925 DFXVFSWXXXLPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSLNMCMYFPGFAAFNFTX 746
D+ V SW L GAQ R+FL+PGYPY L YHN T++ MC Y P F FN T
Sbjct: 100 DYGVLSWDNKLAGAQVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTR 279
Query: 745 G 743
G
Sbjct: 280 G 282
Score = 34.5 bits (69), Expect(2) = 2e-034
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = +3 / -3
Query: 750 VKLKAAKPGKYMHMLRLVALW*PASXXSYG*PGLRNMXXXXXXXXXXXXXXXQLNT 917
V LK K G+Y H+ LV L * SYG PGL+ QL T
Sbjct: 275 VLLKVRKTGRYEHITILVWL**LCKTSSYGYPGLKKSLSLLKRTWAPASLLSQLKT 108
>gb|BV079723.1| Pp_Korrigan Pinus pinaster megagametophytes Pinus pinaster STS
genomic, sequence tagged site
Length = 937
Score = 146 bits (313), Expect(3) = 9e-070
Identities = 56/84 (66%), Positives = 64/84 (76%)
Frame = -3 / +3
Query: 573 QINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLL 394
QINYILG NP KMSYVVG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN++
Sbjct: 684 QINYILGKNPMKMSYVVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVI 863
Query: 393 GGAMVGGPDKNDGFKDSRNTSGRT 322
GAMV GPDK D F D R T
Sbjct: 864 VGAMVAGPDKRDMFHDVRTNYNYT 935
Score = 98.2 bits (208), Expect(3) = 9e-070
Identities = 35/59 (59%), Positives = 46/59 (77%)
Frame = -3 / +3
Query: 744 GGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
GG+ NHGR QPLQYV +FLAA+Y+DY+ A ++PGW CGPNF +T LR+FAR+Q+
Sbjct: 387 GGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQV 563
Score = 89.0 bits (188), Expect(3) = 1e-029
Identities = 43/79 (54%), Positives = 49/79 (62%)
Frame = +2 / -1
Query: 335 VLRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLL 514
++R S S LSGP TMAP LG LSRH PP+ Y G+DAPR CTC G L
Sbjct: 922 LVRTSWNISRLSGPATMAPTITLGLGLGLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WL 743
Query: 515 PNPTT*LIFLGLSPRM*LI 571
P PTT*LIF+G PR+* I
Sbjct: 742 PYPTT*LIFIGFLPRI*FI 686
Score = 59.3 bits (123), Expect(3) = 9e-070
Identities = 22/41 (53%), Positives = 26/41 (63%)
Frame = -2 / +2
Query: 859 MFLNPGYPYXXSLAGYHNATSLNMCMYFPGFAAFNFTXGRD 737
+FL+PGYPY L YHN T++ MC Y P F FN T G D
Sbjct: 179 LFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRGDD 301
Score = 51.0 bits (105), Expect(3) = 1e-029
Identities = 23/55 (41%), Positives = 25/55 (45%)
Frame = +2 / -1
Query: 581 ANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATTYCSGCPLPWLKSAIPP 745
A SR V+ KFGPQ+QPG RK TYC G LPW PP
Sbjct: 550 AKSRNVSVLKKFGPQFQPGISAAVK*SL*TAARKAAFATYCRGWGLPWFS*IKPP 386
Score = 33.6 bits (67), Expect(3) = 1e-029
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +3 / -2
Query: 750 VKLKAAKPGKYMHMLRLVALW*PASXXSYG*PGLR 854
V LK K G+Y H+ LV L * SYG PGL+
Sbjct: 288 VLLKVRKTGRYEHITILVWL**LCKTSSYGYPGLK 184
>gb|DR119504.1|DR119504 RTMG1_23_E02.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_23_E02_A029 5', mRNA sequence
Length = 805
Score = 201 bits (433), Expect(2) = 8e-067
Identities = 73/109 (66%), Positives = 89/109 (81%)
Frame = -3 / +2
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
+GG+ NHGR QPLQYV +FLAA+Y+DY+ A ++PGW CGPNF +T LR+FAR+QI
Sbjct: 479 RGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQI 658
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRD 421
NYILG NP KMSY+VG+GS YP+HVHHRGAS P N +KYSC GG+KWRD
Sbjct: 659 NYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRD 805
Score = 109 bits (232), Expect(2) = 1e-027
Identities = 52/108 (48%), Positives = 58/108 (53%)
Frame = +2 / -2
Query: 422 SRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLPNPTT*LIFLGLSPRM*LI*DLANSRRSL 601
SRH PP+ Y G+DAPR CTC G LP PT *LIF+G PR+* I* A SR
Sbjct: 804 SRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIFIGFLPRI*FI*VRAKSRNVS 625
Query: 602 VVMKFGPQYQPGTLTXXXXXXXXXXRKELATTYCSGCPLPWLKSAIPP 745
V+ KFGPQ+QPG RK TYC G LPW PP
Sbjct: 624 VLKKFGPQFQPGISAAVK*SL*TAARKAAFATYCRGWGLPWFS*IKPP 481
Score = 73.9 bits (155), Expect(2) = 8e-067
Identities = 30/61 (49%), Positives = 35/61 (57%)
Frame = -2 / +2
Query: 925 DFXVFSWXXXLPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSLNMCMYFPGFAAFNFTX 746
D+ V SW L GAQ R+FL+PGYPY L YHN T++ MC Y P F FN T
Sbjct: 302 DYGVLSWDNKLAGAQVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTR 481
Query: 745 G 743
G
Sbjct: 482 G 484
Score = 34.5 bits (69), Expect(2) = 1e-027
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = +3 / -2
Query: 750 VKLKAAKPGKYMHMLRLVALW*PASXXSYG*PGLRNMXXXXXXXXXXXXXXXQLNT 917
V LK K G+Y H+ LV L * SYG PGL+ QL T
Sbjct: 477 VLLKVRKTGRYEHITILVWL**LCKTSSYGYPGLKKSLSLLKRTWAPASLLSQLKT 310
>gb|DR096991.1|DR096991 STRR1_31_E11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_31_E11_A033 5', mRNA sequence
Length = 796
Score = 245 bits (530), Expect(2) = 1e-066
Identities = 93/151 (61%), Positives = 114/151 (75%)
Frame = -3 / +2
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
+GG+ NHGR QPLQYV +FLAA+Y+DY+ A ++PGW CGPNF +T LR+FAR+QI
Sbjct: 32 RGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQI 211
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGG 388
NYILG NP KMSY+VG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN++ G
Sbjct: 212 NYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVG 391
Query: 387 AMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
AMV GPDK D F D R T +GNAG
Sbjct: 392 AMVAGPDKRDMFHDVRTNYNYTEPTLAGNAG 484
Score = 130 bits (279), Expect(2) = 2e-031
Identities = 65/137 (47%), Positives = 73/137 (53%)
Frame = +2 / -2
Query: 335 VLRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLL 514
++R S S LSGP TMAP G LSRH PP+ Y G+DAPR CTC G L
Sbjct: 444 LVRTSWNISRLSGPATMAPTITFGLGLGLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WL 265
Query: 515 PNPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELAT 694
P PT *LIF+G PR+* I* A SR V+ KFGPQ+QPG RK
Sbjct: 264 PYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAAVK*SL*TAARKAAFA 85
Query: 695 TYCSGCPLPWLKSAIPP 745
TYC G LPW PP
Sbjct: 84 TYCRGWGLPWFS*IKPP 34
Score = 29.0 bits (57), Expect(2) = 1e-066
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +2
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 530 IDKNTMFSAVPPMFP 574
Score = 25.8 bits (50), Expect(2) = 2e-031
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / -2
Query: 195 GTLCGTAENMVFLS 236
G + GTAEN+VFLS
Sbjct: 573 GNMGGTAENIVFLS 532
>gb|DR078499.1|DR078499 RTFEPL1_5_C10.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C10_A029 3', mRNA sequence
Length = 779
Score = 245 bits (530), Expect(2) = 1e-066
Identities = 93/151 (61%), Positives = 114/151 (75%)
Frame = -3 / -2
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
+GG+ NHGR QPLQYV +FLAA+Y+DY+ A ++PGW CGPNF +T LR+FAR+QI
Sbjct: 763 RGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQI 584
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGG 388
NYILG NP KMSY+VG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN++ G
Sbjct: 583 NYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVG 404
Query: 387 AMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
AMV GPDK D F D R T +GNAG
Sbjct: 403 AMVAGPDKRDMFHDVRTNYNYTEPTLAGNAG 311
Score = 132 bits (283), Expect(2) = 6e-032
Identities = 66/137 (48%), Positives = 74/137 (54%)
Frame = +2 / +3
Query: 335 VLRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLL 514
++R S S LSGP TMAP LG LSRH PP+ Y G+DAPR CTC G L
Sbjct: 351 LVRTSWNISRLSGPATMAPTITLGLGLGLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WL 530
Query: 515 PNPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELAT 694
P PT *LIF+G PR+* I* A SR V+ KFGPQ+QPG RK
Sbjct: 531 PYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAAVK*SL*TAARKAAFA 710
Query: 695 TYCSGCPLPWLKSAIPP 745
TYC G LPW PP
Sbjct: 711 TYCRGWGLPWFS*IKPP 761
Score = 29.0 bits (57), Expect(2) = 1e-066
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / -2
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 265 IDKNTMFSAVPPMFP 221
Score = 25.8 bits (50), Expect(2) = 6e-032
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / +3
Query: 195 GTLCGTAENMVFLS 236
G + GTAEN+VFLS
Sbjct: 222 GNMGGTAENIVFLS 263
>gb|CF479037.1|CF479037 RTWW3_21_G11.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_G11_A022 5', mRNA sequence
Length = 699
Score = 210 bits (454), Expect(2) = 3e-065
Identities = 76/118 (64%), Positives = 96/118 (81%)
Frame = -3 / +2
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
+GG+ NHGR QPLQYV +FLAA+Y+DY+ A ++PGW CGPNF +T LR+FAR+QI
Sbjct: 344 RGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQI 523
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLL 394
NYILG NP KMSY+VG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN++
Sbjct: 524 NYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVI 697
Score = 112 bits (240), Expect(2) = 2e-028
Identities = 55/115 (47%), Positives = 61/115 (53%)
Frame = +2 / -1
Query: 401 LGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLPNPTT*LIFLGLSPRM*LI*DL 580
LG LSRH PP+ Y G+DAPR CTC G LP PT *LIF+G PR+* I*
Sbjct: 690 LGLGLGLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIFIGFLPRI*FI*VR 511
Query: 581 ANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATTYCSGCPLPWLKSAIPP 745
A SR V+ KFGPQ+QPG RK TYC G LPW PP
Sbjct: 510 AKSRNVSVLKKFGPQFQPGISAAVK*SL*TAARKAAFATYCRGWGLPWFS*IKPP 346
Score = 58.8 bits (122), Expect(2) = 3e-065
Identities = 24/48 (50%), Positives = 28/48 (58%)
Frame = -2 / +2
Query: 886 AQXXXXXXRMFLNPGYPYXXSLAGYHNATSLNMCMYFPGFAAFNFTXG 743
AQ R+FL+PGYPY L YHN T++ MC Y P F FN T G
Sbjct: 206 AQVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRG 349
Score = 33.6 bits (67), Expect(2) = 2e-028
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +3 / -1
Query: 750 VKLKAAKPGKYMHMLRLVALW*PASXXSYG*PGLR 854
V LK K G+Y H+ LV L * SYG PGL+
Sbjct: 342 VLLKVRKTGRYEHITILVWL**LCKTSSYGYPGLK 238
>gb|AW870019.1|AW870019 NXNV_123_B02_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_123_B02 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 569
Score = 193 bits (415), Expect(2) = 2e-064
Identities = 72/118 (61%), Positives = 91/118 (77%)
Frame = -3 / +3
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
+GG+ NHGR QPLQYV +FLAA+Y+DY+ A ++PGW CGPNF +T LR+FAR+QI
Sbjct: 198 RGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQI 377
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLL 394
NYILG NP KMSY+VG+GS YP+HVHHRGAS P N +KYS +K RDS +PN++
Sbjct: 378 NYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSXXXXWKXRDSXXXNPNVI 551
Score = 97.7 bits (207), Expect(2) = 3e-024
Identities = 47/98 (47%), Positives = 52/98 (53%)
Frame = +2 / -2
Query: 452 YLTPLCGVDAPRWCTCRGYLLPNPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQ 631
Y G+DAPR CTC G LP PT *LIF+G PR+* I* A SR V+ KFGPQ+Q
Sbjct: 493 YFILFFGMDAPR*CTCLG*WLPYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQ 314
Query: 632 PGTLTXXXXXXXXXXRKELATTYCSGCPLPWLKSAIPP 745
PG RK TYC G LPW PP
Sbjct: 313 PGISAAVK*SL*TAARKAAFATYCRGWGLPWFS*IKPP 200
Score = 73.9 bits (155), Expect(2) = 2e-064
Identities = 30/61 (49%), Positives = 35/61 (57%)
Frame = -2 / +3
Query: 925 DFXVFSWXXXLPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSLNMCMYFPGFAAFNFTX 746
D+ V SW L GAQ R+FL+PGYPY L YHN T++ MC Y P F FN T
Sbjct: 21 DYGVLSWDNKLAGAQVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTR 200
Query: 745 G 743
G
Sbjct: 201 G 203
Score = 34.5 bits (69), Expect(2) = 3e-024
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = +3 / -2
Query: 750 VKLKAAKPGKYMHMLRLVALW*PASXXSYG*PGLRNMXXXXXXXXXXXXXXXQLNT 917
V LK K G+Y H+ LV L * SYG PGL+ QL T
Sbjct: 196 VLLKVRKTGRYEHITILVWL**LCKTSSYGYPGLKKSLSLLKRTWAPASLLSQLKT 29
>gb|BX680640.1|BX680640 BX680640 RS Pinus pinaster cDNA clone RS46D05, mRNA sequence
Length = 578
Score = 232 bits (500), Expect(2) = 3e-063
Identities = 89/141 (63%), Positives = 107/141 (75%)
Frame = -3 / +3
Query: 717 RGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQINYILGDNPKK 538
R QPLQYV +FLAA+Y+DY+ A ++PGW CGPNF +T LR+FAR+QINYILG NP K
Sbjct: 3 RPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMK 182
Query: 537 MSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKND 358
MSYVVG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN++ GAMV GPDK D
Sbjct: 183 MSYVVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRD 362
Query: 357 GFKDSRNTSGRTSRRWSGNAG 295
F D R T +GNAG
Sbjct: 363 MFHDVRTNYNYTEPTLAGNAG 425
Score = 124 bits (265), Expect(2) = 7e-030
Identities = 62/125 (49%), Positives = 70/125 (56%)
Frame = +2 / -2
Query: 335 VLRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLL 514
++R S S LSGP TMAP LG LSRH PP+ Y G+DAPR CTC G L
Sbjct: 385 LVRTSWNISRLSGPATMAPTITLGLGLGLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WL 206
Query: 515 PNPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELAT 694
P PTT*LIF+G PR+* I* A SR V+ KFGPQ+QPG RK
Sbjct: 205 PYPTT*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAAVK*SL*TAARKAAFA 26
Query: 695 TYCSG 709
TYC G
Sbjct: 25 TYCRG 11
Score = 31.3 bits (62), Expect(2) = 3e-063
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -2 / +3
Query: 238 VDKNTMFSAVPHNVPRRAATT 176
+DKNTMFSAVP P TT
Sbjct: 471 IDKNTMFSAVPAMFPSPPPTT 533
Score = 27.2 bits (53), Expect(2) = 7e-030
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / -2
Query: 195 GTLCGTAENMVFLS 236
G + GTAEN+VFLS
Sbjct: 514 GNMAGTAENIVFLS 473
>gb|CX652902.1|CX652902 COLD1_62_E09.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_E09_A029 3', mRNA sequence
Length = 717
Score = 227 bits (490), Expect(2) = 3e-061
Identities = 86/141 (60%), Positives = 106/141 (75%)
Frame = -3 / -2
Query: 717 RGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQINYILGDNPKK 538
+ PLQYV +FLAA+Y+DY+ A ++PGW CGPNF +T LR+FAR+QINYILG NP K
Sbjct: 695 KAPPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMK 516
Query: 537 MSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKND 358
MSY+VG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN++ GAMV GPDK D
Sbjct: 515 MSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRD 336
Query: 357 GFKDSRNTSGRTSRRWSGNAG 295
F D R T +GNAG
Sbjct: 335 MFHDVRTNYNYTEPTLAGNAG 273
Score = 121 bits (259), Expect(2) = 1e-028
Identities = 61/125 (48%), Positives = 69/125 (55%)
Frame = +2 / +1
Query: 335 VLRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLL 514
++R S S LSGP TMAP LG LSRH PP+ Y G+DAPR CTC G L
Sbjct: 313 LVRTSWNISRLSGPATMAPTITLGLGLGLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WL 492
Query: 515 PNPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELAT 694
P PT *LIF+G PR+* I* A SR V+ KFGPQ+QPG RK
Sbjct: 493 PYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAAVK*SL*TAARKAAFA 672
Query: 695 TYCSG 709
TYC G
Sbjct: 673 TYCRG 687
Score = 29.0 bits (57), Expect(2) = 3e-061
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / -2
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 227 IDKNTMFSAVPPMFP 183
Score = 25.8 bits (50), Expect(2) = 1e-028
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / +1
Query: 195 GTLCGTAENMVFLS 236
G + GTAEN+VFLS
Sbjct: 184 GNMGGTAENIVFLS 225
>gb|BQ699769.1|BQ699769 NXRV128_G04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV128_G04 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 512
Score = 232 bits (500), Expect = 5e-060
Identities = 86/134 (64%), Positives = 105/134 (78%)
Frame = -3 / +2
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
+GG+ NHGR QPLQYV +FLAA+Y+DY+ A ++PGW CGPNF +T LR+FAR+QI
Sbjct: 38 RGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQI 217
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGG 388
NYILG NP KMSY+VG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN + G
Sbjct: 218 NYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNXIVG 397
Query: 387 AMVGGPDKNDGFKD 346
A V GPDK D F D
Sbjct: 398 AXVAGPDKRDMFHD 439
Score = 127 bits (272), Expect = 1e-028
Identities = 63/129 (48%), Positives = 69/129 (53%)
Frame = +2 / -3
Query: 359 SFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLPNPTT*LI 538
S LSGP T AP LG LSRH PP+ Y G+DAPR CTC G LP PT *LI
Sbjct: 426 SRLSGPATXAPTIXLGLGLGLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LI 247
Query: 539 FLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATTYCSGCPL 718
F+G PR+* I* A SR V+ KFGPQ+QPG RK TYC G L
Sbjct: 246 FIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAAVK*SL*TAARKAAFATYCRGWGL 67
Query: 719 PWLKSAIPP 745
PW PP
Sbjct: 66 PWFS*IKPP 40
>gb|BX679935.1|BX679935 BX679935 RS Pinus pinaster cDNA clone RS36F1, mRNA sequence
Length = 620
Score = 172 bits (370), Expect(2) = 3e-058
Identities = 64/95 (67%), Positives = 77/95 (81%)
Frame = -3 / +1
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
+GG+ NHGR QPLQYV +FLAA+Y+DY+ A ++PGW CGPNF +T LR+FAR+QI
Sbjct: 331 RGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQI 510
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHN 463
NYILG NP KMSYVVG+GS YP+HVHHRGAS P N
Sbjct: 511 NYILGKNPMKMSYVVGYGSHYPKHVHHRGASIPKN 615
Score = 100 bits (212), Expect(2) = 7e-025
Identities = 47/92 (51%), Positives = 52/92 (56%)
Frame = +2 / -1
Query: 470 GVDAPRWCTCRGYLLPNPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLTX 649
G+DAPR CTC G LP PTT*LIF+G PR+* I* A SR V+ KFGPQ+QPG
Sbjct: 608 GMDAPR*CTCLG*WLPYPTT*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPGISAA 429
Query: 650 XXXXXXXXXRKELATTYCSGCPLPWLKSAIPP 745
RK TYC G LPW PP
Sbjct: 428 VK*SL*TAARKAAFATYCRGWGLPWFS*IKPP 333
Score = 73.9 bits (155), Expect(2) = 3e-058
Identities = 30/61 (49%), Positives = 35/61 (57%)
Frame = -2 / +1
Query: 925 DFXVFSWXXXLPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSLNMCMYFPGFAAFNFTX 746
D+ V SW L GAQ R+FL+PGYPY L YHN T++ MC Y P F FN T
Sbjct: 154 DYGVLSWDNKLAGAQVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTR 333
Query: 745 G 743
G
Sbjct: 334 G 336
Score = 34.5 bits (69), Expect(2) = 7e-025
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = +3 / -1
Query: 750 VKLKAAKPGKYMHMLRLVALW*PASXXSYG*PGLRNMXXXXXXXXXXXXXXXQLNT 917
V LK K G+Y H+ LV L * SYG PGL+ QL T
Sbjct: 329 VLLKVRKTGRYEHITILVWL**LCKTSSYGYPGLKKSLSLLKRTWAPASLLSQLKT 162
>gb|DR169132.1|DR169132 RTPHOS1_30_F09.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_30_F09_A029 3', mRNA sequence
Length = 765
Score = 216 bits (466), Expect(2) = 6e-058
Identities = 81/130 (62%), Positives = 100/130 (76%)
Frame = -3 / -2
Query: 684 SFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKY 505
+FLAA+Y+DY+ A ++PGW CGPNF +T LR+FAR+QINYILG NP KMSY+VG+GS Y
Sbjct: 758 AFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHY 579
Query: 504 PRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGR 325
P+HVHHRGAS P N +KYSC GG+KWRDS + +PN++ GAMV GPDK D F D R
Sbjct: 578 PKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNY 399
Query: 324 TSRRWSGNAG 295
T +GNAG
Sbjct: 398 TEPTLAGNAG 369
Score = 113 bits (241), Expect(2) = 3e-026
Identities = 55/101 (54%), Positives = 63/101 (62%)
Frame = +2 / +1
Query: 335 VLRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLL 514
++R S S LSGP TMAP LG LSRH PP+ Y G+DAPR CTC G L
Sbjct: 409 LVRTSWNISRLSGPATMAPTITLGLGLGLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WL 588
Query: 515 PNPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPG 637
P PT *LIF+G PR+* I* A SR V+ KFGPQ+QPG
Sbjct: 589 PYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPG 711
Score = 29.0 bits (57), Expect(2) = 6e-058
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / -2
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 323 IDKNTMFSAVPPMFP 279
Score = 25.8 bits (50), Expect(2) = 3e-026
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / +1
Query: 195 GTLCGTAENMVFLS 236
G + GTAEN+VFLS
Sbjct: 280 GNMGGTAENIVFLS 321
>gb|BG625807.1|BG625807 NXPV_066_C10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_066_C10 5' similar to Arabidopsis
thaliana sequence At5g49720 cellulase homolog OR16pep
precursor (pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 520
Score = 216 bits (466), Expect(2) = 6e-058
Identities = 81/130 (62%), Positives = 100/130 (76%)
Frame = -3 / +2
Query: 684 SFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKY 505
+FLAA+Y+DY+ A ++PGW CGPNF +T LR+FAR+QINYILG NP KMSY+VG+GS Y
Sbjct: 11 AFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHY 190
Query: 504 PRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGR 325
P+HVHHRGAS P N +KYSC GG+KWRDS + +PN++ GAMV GPDK D F D R
Sbjct: 191 PKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNY 370
Query: 324 TSRRWSGNAG 295
T +GNAG
Sbjct: 371 TEPTLAGNAG 400
Score = 113 bits (241), Expect(2) = 3e-026
Identities = 55/101 (54%), Positives = 63/101 (62%)
Frame = +2 / -2
Query: 335 VLRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLL 514
++R S S LSGP TMAP LG LSRH PP+ Y G+DAPR CTC G L
Sbjct: 360 LVRTSWNISRLSGPATMAPTITLGLGLGLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WL 181
Query: 515 PNPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPG 637
P PT *LIF+G PR+* I* A SR V+ KFGPQ+QPG
Sbjct: 180 PYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPG 58
Score = 29.0 bits (57), Expect(2) = 6e-058
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +2
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 446 IDKNTMFSAVPPMFP 490
Score = 25.8 bits (50), Expect(2) = 3e-026
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / -2
Query: 195 GTLCGTAENMVFLS 236
G + GTAEN+VFLS
Sbjct: 489 GNMGGTAENIVFLS 448
>gb|BQ698529.1|BQ698529 NXPV_071_A11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_071_A11 5' similar to Arabidopsis
thaliana sequence At5g49720 cellulase homolog OR16pep
precursor (pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 518
Score = 216 bits (466), Expect(2) = 6e-058
Identities = 81/130 (62%), Positives = 100/130 (76%)
Frame = -3 / +2
Query: 684 SFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKY 505
+FLAA+Y+DY+ A ++PGW CGPNF +T LR+FAR+QINYILG NP KMSY+VG+GS Y
Sbjct: 11 AFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHY 190
Query: 504 PRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGR 325
P+HVHHRGAS P N +KYSC GG+KWRDS + +PN++ GAMV GPDK D F D R
Sbjct: 191 PKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNY 370
Query: 324 TSRRWSGNAG 295
T +GNAG
Sbjct: 371 TEPTLAGNAG 400
Score = 113 bits (241), Expect(2) = 3e-026
Identities = 55/101 (54%), Positives = 63/101 (62%)
Frame = +2 / -3
Query: 335 VLRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLL 514
++R S S LSGP TMAP LG LSRH PP+ Y G+DAPR CTC G L
Sbjct: 360 LVRTSWNISRLSGPATMAPTITLGLGLGLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WL 181
Query: 515 PNPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPG 637
P PT *LIF+G PR+* I* A SR V+ KFGPQ+QPG
Sbjct: 180 PYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPG 58
Score = 29.0 bits (57), Expect(2) = 6e-058
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +2
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 446 IDKNTMFSAVPPMFP 490
Score = 25.8 bits (50), Expect(2) = 3e-026
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / -3
Query: 195 GTLCGTAENMVFLS 236
G + GTAEN+VFLS
Sbjct: 489 GNMGGTAENIVFLS 448
>gb|DR744307.1|DR744307 RTCU1_21_D02.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_D02_A029 5', mRNA sequence
Length = 871
Score = 197 bits (425), Expect(2) = 3e-052
Identities = 74/120 (61%), Positives = 90/120 (75%)
Frame = -3 / +1
Query: 654 MEAVNVPGWYCGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGAS 475
+ A ++PGW CGPNF +T LR+FAR+QINYILG NP KMSY+VG+GS YP+HVHHRGAS
Sbjct: 1 LTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGAS 180
Query: 474 TPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
P N +KYSC GG+KWRDS + +PN++ GAMV GPDK D F D R T +GNAG
Sbjct: 181 IPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAG 360
Score = 113 bits (241), Expect(2) = 3e-026
Identities = 55/101 (54%), Positives = 63/101 (62%)
Frame = +2 / -3
Query: 335 VLRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLL 514
++R S S LSGP TMAP LG LSRH PP+ Y G+DAPR CTC G L
Sbjct: 320 LVRTSWNISRLSGPATMAPTITLGLGLGLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WL 141
Query: 515 PNPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPG 637
P PT *LIF+G PR+* I* A SR V+ KFGPQ+QPG
Sbjct: 140 PYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGPQFQPG 18
Score = 29.0 bits (57), Expect(2) = 3e-052
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +1
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 406 IDKNTMFSAVPPMFP 450
Score = 25.8 bits (50), Expect(2) = 3e-026
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / -3
Query: 195 GTLCGTAENMVFLS 236
G + GTAEN+VFLS
Sbjct: 449 GNMGGTAENIVFLS 408
>gb|CV032797.1|CV032797 RTNACL1_18_H11.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_18_H11_A029 3', mRNA sequence
Length = 764
Score = 196 bits (422), Expect = 3e-049
Identities = 74/130 (56%), Positives = 92/130 (70%)
Frame = -3 / +3
Query: 642 NVPGWYCGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHN 463
N+PGWYCGP + LR+FA +QINYILG NP MSYVVG+G++YP+HVHHR AS P N
Sbjct: 3 NIPGWYCGPTYFDRQTLRDFATTQINYILGKNPLGMSYVVGYGNRYPKHVHHRAASIPQN 182
Query: 462 GVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAGXXXX 283
GVKY+CT G+KWRDS +P++L GAMVGGPDK D F D+RN +T +GNAG
Sbjct: 183 GVKYTCTSGFKWRDSPNPNPHVLTGAMVGGPDKFDRFNDARNNYNQTEPTIAGNAGLVAA 362
Query: 282 XXXLTSSGRG 253
L++ G
Sbjct: 363 LIALSNGDNG 392
Score = 117 bits (250), Expect = 1e-025
Identities = 58/101 (57%), Positives = 67/101 (66%)
Frame = +2 / -2
Query: 335 VLRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLL 514
+LR SLK S LSGPPT+AP S G F LSRHL P VH Y TP G++A R CTC G L
Sbjct: 310 LLRASLKRSNLSGPPTIAPVSTCGLGFGLSRHLKPLVHVYFTPF*GIEAAR*CTCFG*RL 131
Query: 515 PNPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPG 637
P PTT*L+ G P++* I* +A SRR + GPQYQPG
Sbjct: 130 P*PTT*LMPRGFFPKI*FI*VVAKSRRVCLSK*VGPQYQPG 8
>gb|BQ654431.1|BQ654431 NXRV080_B12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV080_B12 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 561
Score = 179 bits (385), Expect(2) = 8e-047
Identities = 69/109 (63%), Positives = 82/109 (75%)
Frame = -3 / +3
Query: 621 GPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCT 442
GPNF +T LR+FAR+QINYILG NP KMSY+VG+GS YP+HVHHRGAS P N +KYSC
Sbjct: 3 GPNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCK 182
Query: 441 GGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
GG+KWRDS + +PN++ GAMV GPDK D F D R T +GNAG
Sbjct: 183 GGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAG 329
Score = 101 bits (215), Expect(2) = 1e-022
Identities = 51/96 (53%), Positives = 58/96 (60%)
Frame = +2 / -3
Query: 335 VLRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLL 514
++R S S LSGP TMAP LG LSRH PP+ Y G+DAPR CTC G L
Sbjct: 289 LVRTSWNISRLSGPATMAPTITLGLGLGLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WL 110
Query: 515 PNPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGP 622
P PT *LIF+G PR+* I* A SR V+ KFGP
Sbjct: 109 PYPTR*LIFIGFLPRI*FI*VRAKSRNVSVLKKFGP 2
Score = 29.0 bits (57), Expect(2) = 8e-047
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 375 IDKNTMFSAVPPMFP 419
Score = 25.8 bits (50), Expect(2) = 1e-022
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / -3
Query: 195 GTLCGTAENMVFLS 236
G + GTAEN+VFLS
Sbjct: 418 GNMGGTAENIVFLS 377
>gb|CX648273.1|CX648273 COLD1_27_D03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_27_D03_A029 5', mRNA sequence
Length = 830
Score = 169 bits (364), Expect(2) = 6e-044
Identities = 66/106 (62%), Positives = 78/106 (73%)
Frame = -3 / +2
Query: 612 FMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGY 433
F T LR+FAR+QINYILG NP KMSY+VG+GS YP+HVHHRGAS P N +KYSC GG+
Sbjct: 2 FFRTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGW 181
Query: 432 KWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
KWRDS + +PN++ GAMV GPDK D F D R T +GNAG
Sbjct: 182 KWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAG 319
Score = 29.0 bits (57), Expect(2) = 6e-044
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +2
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 365 IDKNTMFSAVPPMFP 409
>gb|BF010621.1|BF010621 NXCI_087_A08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_087_A08 5' similar to Arabidopsis
thaliana sequence At5g49720 cellulase homolog OR16pep
precursor (pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 388
Score = 175 bits (376), Expect = 6e-043
Identities = 67/110 (60%), Positives = 80/110 (72%)
Frame = -3 / +2
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSC 445
CGPNF +T LR+FAR+QINYILG NP KMSY+VG+GS YP+HVHHRGAS P N +KYSC
Sbjct: 2 CGPNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSC 181
Query: 444 TGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
GG+KWRDS + +PN++ MV GPDK D F D R T + NAG
Sbjct: 182 KGGWKWRDSPRPNPNVIVXXMVAGPDKRDMFHDVRTNYNYTEPTLAXNAG 331
>gb|DR096719.1|DR096719 STRR1_29_G07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_29_G07_A033 5', mRNA sequence
Length = 747
Score = 163 bits (351), Expect(2) = 3e-042
Identities = 63/99 (63%), Positives = 75/99 (75%)
Frame = -3 / +3
Query: 591 REFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKK 412
R+FAR+QINYILG NP KMSY+VG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS +
Sbjct: 3 RDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPR 182
Query: 411 ADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
+PN++ GAMV GPDK D F D R T +GNAG
Sbjct: 183 PNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAG 299
Score = 29.0 bits (57), Expect(2) = 3e-042
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 345 IDKNTMFSAVPPMFP 389
>gb|CO172739.1|CO172739 NDL1_31_C08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_31_C08_A029 5', mRNA sequence
Length = 816
Score = 153 bits (328), Expect(2) = 5e-039
Identities = 59/93 (63%), Positives = 69/93 (74%)
Frame = -3 / +3
Query: 573 QINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLL 394
QINYILG NP KMSY+VG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN++
Sbjct: 3 QINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVI 182
Query: 393 GGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
GAMV GPDK D F D R T +GNAG
Sbjct: 183 VGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAG 281
Score = 29.0 bits (57), Expect(2) = 5e-039
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 327 IDKNTMFSAVPPMFP 371
>gb|AW290720.1|AW290720 NXNV046B09F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV046B09 5', mRNA sequence
Length = 450
Score = 153 bits (328), Expect(2) = 5e-039
Identities = 59/93 (63%), Positives = 69/93 (74%)
Frame = -3 / +3
Query: 573 QINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLL 394
QINYILG NP KMSY+VG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN++
Sbjct: 3 QINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVI 182
Query: 393 GGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
GAMV GPDK D F D R T +GNAG
Sbjct: 183 VGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAG 281
Score = 29.0 bits (57), Expect(2) = 5e-039
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 327 IDKNTMFSAVPPMFP 371
>gb|CD027383.1|CD027383 NXNV046B09 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV046B09 5' similar to Arabidopsis thaliana sequence
At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 450
Score = 153 bits (328), Expect(2) = 5e-039
Identities = 59/93 (63%), Positives = 69/93 (74%)
Frame = -3 / +3
Query: 573 QINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLL 394
QINYILG NP KMSY+VG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN++
Sbjct: 3 QINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVI 182
Query: 393 GGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
GAMV GPDK D F D R T +GNAG
Sbjct: 183 VGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAG 281
Score = 29.0 bits (57), Expect(2) = 5e-039
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 327 IDKNTMFSAVPPMFP 371
>gb|CO361699.1|CO361699 NDL2_6_B04.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_B04_A029 5', mRNA sequence
Length = 818
Score = 149 bits (319), Expect(2) = 8e-038
Identities = 57/91 (62%), Positives = 67/91 (73%)
Frame = -3 / +1
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGG 388
NYILG NP KMSY+VG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN++ G
Sbjct: 10 NYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVG 189
Query: 387 AMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
AMV GPDK D F D R T +GNAG
Sbjct: 190 AMVAGPDKRDMFHDVRTNYNYTEPTLAGNAG 282
Score = 29.0 bits (57), Expect(2) = 8e-038
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +1
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 328 IDKNTMFSAVPPMFP 372
>gb|DR385816.1|DR385816 RTHG1_11_C03.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_11_C03_A029 3', mRNA sequence
Length = 754
Score = 146 bits (313), Expect(2) = 5e-037
Identities = 56/90 (62%), Positives = 66/90 (73%)
Frame = -3 / -3
Query: 564 YILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGA 385
YILG NP KMSY+VG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN++ GA
Sbjct: 752 YILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGA 573
Query: 384 MVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
MV GPDK D F D R T +GNAG
Sbjct: 572 MVAGPDKRDMFHDVRTNYNYTEPTLAGNAG 483
Score = 29.0 bits (57), Expect(2) = 5e-037
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / -3
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 437 IDKNTMFSAVPPMFP 393
>gb|DR078575.1|DR078575 RTFEPL1_5_C10.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C10_A029 5', mRNA sequence
Length = 837
Score = 131 bits (281), Expect(2) = 1e-032
Identities = 50/82 (60%), Positives = 60/82 (73%)
Frame = -3 / -3
Query: 540 KMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKN 361
KMSY+VG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN++ GAMV GPDK
Sbjct: 835 KMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKR 656
Query: 360 DGFKDSRNTSGRTSRRWSGNAG 295
D F D R T +GNAG
Sbjct: 655 DMFHDVRTNYNYTEPTLAGNAG 590
Score = 29.0 bits (57), Expect(2) = 1e-032
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / -3
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 544 IDKNTMFSAVPPMFP 500
>gb|CV033821.1|CV033821 RTNACL1_36_G06.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_36_G06_A029 5', mRNA sequence
Length = 711
Score = 131 bits (281), Expect(2) = 1e-032
Identities = 50/82 (60%), Positives = 60/82 (73%)
Frame = -3 / +3
Query: 540 KMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKN 361
KMSY+VG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN++ GAMV GPDK
Sbjct: 9 KMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKR 188
Query: 360 DGFKDSRNTSGRTSRRWSGNAG 295
D F D R T +GNAG
Sbjct: 189 DMFHDVRTNYNYTEPTLAGNAG 254
Score = 29.0 bits (57), Expect(2) = 1e-032
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 300 IDKNTMFSAVPPMFP 344
>gb|BE187088.1|BE187088 NXNV_155_C08_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_155_C08 5' similar to Arabidopsis thaliana
sequence At4g24260 endo-1,4-beta-glucanase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 233
Score = 137 bits (293), Expect = 2e-031
Identities = 51/77 (66%), Positives = 62/77 (80%)
Frame = -3 / +3
Query: 708 PLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQINYILGDNPKKMSY 529
PLQYV +FLAA+Y+DY+ A +PGW CGPNF +T LR+FAR+QINYIL NP KMSY
Sbjct: 3 PLQYVANAAFLAAVYSDYLTAAXIPGWNCGPNFFSTETLRDFARTQINYILXKNPMKMSY 182
Query: 528 VVGFGSKYPRHVHHRGA 478
+VG+GS YP+ VHHRGA
Sbjct: 183 LVGYGSHYPKXVHHRGA 233
>gb|DR020418.1|DR020418 STRS1_36_G05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_36_G05_A034 5', mRNA sequence
Length = 735
Score = 127 bits (271), Expect(2) = 3e-031
Identities = 48/80 (60%), Positives = 58/80 (72%)
Frame = -3 / +3
Query: 534 SYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDG 355
SY+VG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN++ GAMV GPDK D
Sbjct: 3 SYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDM 182
Query: 354 FKDSRNTSGRTSRRWSGNAG 295
F D R T +GNAG
Sbjct: 183 FHDVRTNYNYTEPTLAGNAG 242
Score = 29.0 bits (57), Expect(2) = 3e-031
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 288 IDKNTMFSAVPPMFP 332
>gb|DR051556.1|DR051556 RTBOR1_30_H04.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_30_H04_A029 5', mRNA sequence
Length = 591
Score = 127 bits (271), Expect(2) = 3e-031
Identities = 48/80 (60%), Positives = 58/80 (72%)
Frame = -3 / +2
Query: 534 SYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDG 355
SY+VG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN++ GAMV GPDK D
Sbjct: 2 SYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDM 181
Query: 354 FKDSRNTSGRTSRRWSGNAG 295
F D R T +GNAG
Sbjct: 182 FHDVRTNYNYTEPTLAGNAG 241
Score = 29.0 bits (57), Expect(2) = 3e-031
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +2
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 287 IDKNTMFSAVPPMFP 331
>gb|DR164313.1|DR164313 RTFE1_48_E03.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_48_E03_A029 3', mRNA sequence
Length = 839
Score = 125 bits (267), Expect(2) = 1e-030
Identities = 47/79 (59%), Positives = 57/79 (72%)
Frame = -3 / +2
Query: 531 YVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGF 352
Y+VG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN++ GAMV GPDK D F
Sbjct: 2 YLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMF 181
Query: 351 KDSRNTSGRTSRRWSGNAG 295
D R T +GNAG
Sbjct: 182 HDVRTNYNYTEPTLAGNAG 238
Score = 29.0 bits (57), Expect(2) = 1e-030
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +2
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 284 IDKNTMFSAVPPMFP 328
>gb|CF667382.1|CF667382 RTCNT1_29_H05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_29_H05_A029 5', mRNA sequence
Length = 772
Score = 125 bits (267), Expect(2) = 1e-030
Identities = 47/79 (59%), Positives = 57/79 (72%)
Frame = -3 / +1
Query: 531 YVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGF 352
Y+VG+GS YP+HVHHRGAS P N +KYSC GG+KWRDS + +PN++ GAMV GPDK D F
Sbjct: 1 YLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMF 180
Query: 351 KDSRNTSGRTSRRWSGNAG 295
D R T +GNAG
Sbjct: 181 HDVRTNYNYTEPTLAGNAG 237
Score = 29.0 bits (57), Expect(2) = 1e-030
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +1
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 283 IDKNTMFSAVPPMFP 327
>gb|DR167591.1|DR167591 RTPHOS1_19_F11.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_19_F11_A029 5', mRNA sequence
Length = 829
Score = 87.7 bits (185), Expect(3) = 4e-030
Identities = 32/46 (69%), Positives = 39/46 (84%)
Frame = -3 / -3
Query: 606 TTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
T DLR+FA SQ++YILG+NP +MSY+VGFG YP+HVHHRGAS P
Sbjct: 596 TPQDLRKFAFSQVDYILGENPMRMSYLVGFGDNYPKHVHHRGASIP 459
Score = 55.1 bits (114), Expect(3) = 4e-030
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = -3 / -3
Query: 453 YSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRN 337
Y C GY W +SK +PN+ GA+VGGP +ND F D R+
Sbjct: 440 YDCNSGYVWFNSKSPNPNVATGALVGGPFQNDSFIDIRS 324
Score = 27.2 bits (53), Expect(3) = 4e-030
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3 / -3
Query: 705 LQYVVANSFLAALYADYMEAVNVPGWYCG 619
+Q+ V ++ LA +Y+DY+ V CG
Sbjct: 698 IQHSVNSALLALIYSDYLLTSRVENMKCG 612
>gb|DR167508.1|DR167508 RTPHOS1_19_F11.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_19_F11_A029 3', mRNA sequence
Length = 802
Score = 87.7 bits (185), Expect(3) = 6e-030
Identities = 32/46 (69%), Positives = 39/46 (84%)
Frame = -3 / -3
Query: 606 TTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
T DLR+FA SQ++YILG+NP +MSY+VGFG YP+HVHHRGAS P
Sbjct: 272 TPQDLRKFAFSQVDYILGENPMRMSYLVGFGDNYPKHVHHRGASIP 135
Score = 54.7 bits (113), Expect(3) = 6e-030
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = -3 / -3
Query: 453 YSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSR 340
Y C GY W +SK +PN+ GA+VGGP +ND F D R
Sbjct: 116 YDCNSGYVWFNSKSPNPNVATGALVGGPFQNDSFIDIR 3
Score = 27.2 bits (53), Expect(3) = 6e-030
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3 / -3
Query: 705 LQYVVANSFLAALYADYMEAVNVPGWYCG 619
+Q+ V ++ LA +Y+DY+ V CG
Sbjct: 374 IQHSVNSALLALIYSDYLLTSRVENMKCG 288
>gb|AW985166.1|AW985166 NXNV_133_G09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_133_G09 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 455
Score = 74.8 bits (157), Expect(2) = 3e-029
Identities = 26/44 (59%), Positives = 32/44 (72%)
Frame = -3 / +1
Query: 741 GMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNF 610
G+ NHG PL YVV +FLAALY+DY+ A N+PGWYCGP +
Sbjct: 286 GLIQLNHGNPXPLXYVVNAAFLAALYSDYLAAANIPGWYCGPTY 417
Score = 74.4 bits (156), Expect(2) = 3e-029
Identities = 29/56 (51%), Positives = 35/56 (62%)
Frame = -2 / +1
Query: 916 VFSWXXXLPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSLNMCMYFPGFAAFNFT 749
VFSW LPGAQ RMFL+PGYPY L YHN T++ +C Y P + +FN T
Sbjct: 112 VFSWDNKLPGAQILLTRLRMFLDPGYPYENLLDSYHNQTTILLCSYLPNYKSFNRT 279
>gb|BQ699374.1|BQ699374 NXRV126_H08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV126_H08 5' similar to Arabidopsis thaliana
sequence At1g19940 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 548
Score = 85.4 bits (180), Expect(2) = 1e-026
Identities = 31/46 (67%), Positives = 39/46 (84%)
Frame = -3 / +2
Query: 606 TTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
T DLR+FA SQ++YILG+NP +MSY+VGFG+ YP+HVHH GAS P
Sbjct: 188 TPQDLRKFAFSQVDYILGENPMRMSYLVGFGNNYPKHVHHXGASIP 325
Score = 55.1 bits (114), Expect(2) = 1e-026
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = -3 / +2
Query: 453 YSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRN 337
Y C GY W +SK +PN+ GA+VGGP +ND F D R+
Sbjct: 344 YDCNSGYVWFNSKSPNPNVATGALVGGPFQNDSFIDIRS 460
>gb|BQ701766.1|BQ701766 NXSI_120_D02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_120_D02 5' similar to Arabidopsis thaliana
sequence At1g64390 endo-beta-1,4-glucanase, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 542
Score = 72.5 bits (152), Expect(3) = 5e-026
Identities = 27/50 (54%), Positives = 37/50 (74%)
Frame = -3 / +1
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGAS 475
C + ++L FA+SQI+YILGDNP+ SY+VG+GS YP+ VHHR +S
Sbjct: 193 CPGGAVQPSELLSFAQSQIDYILGDNPRATSYMVGYGSNYPQQVHHRASS 342
Score = 55.6 bits (115), Expect(3) = 5e-026
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -3 / +1
Query: 429 WRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNA 298
W S +DPN+L GA+VGGPD+ND F D RN +T NA
Sbjct: 400 WYSSXXSDPNVLHGALVGGPDQNDNFADERNNYEQTEPATYNNA 531
Score = 28.1 bits (55), Expect(3) = 5e-026
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -3 / +1
Query: 705 LQYVVANSFLAALYADYMEAVN 640
+Q+V + SFL ++Y+DY+ A +
Sbjct: 115 IQFVTSASFLLSVYSDYLTATH 180
>gb|DR683407.1|DR683407 EST1073483 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAG79 3' end, mRNA sequence
Length = 702
Score = 69.3 bits (145), Expect(3) = 1e-025
Identities = 26/50 (52%), Positives = 36/50 (72%)
Frame = -3 / +3
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGAS 475
C + ++L A+SQI+YILGDNP+ SY+VG+GS YP+ VHHR +S
Sbjct: 93 CPGGAVQPSELVSLAQSQIDYILGDNPRATSYMVGYGSNYPQQVHHRASS 242
Score = 57.9 bits (120), Expect(3) = 1e-025
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = -3 / +3
Query: 429 WRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNA 298
W SK +DPN+L GA+VGGPD+ND F D RN +T NA
Sbjct: 300 WYSSKGSDPNVLHGALVGGPDQNDNFADERNNYEQTEPATYNNA 431
Score = 27.6 bits (54), Expect(3) = 1e-025
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3 / +3
Query: 705 LQYVVANSFLAALYADYMEAVN 640
+Q+V + SFL +Y+DY+ A +
Sbjct: 15 IQFVTSASFLLTVYSDYLTATH 80
>gb|U76725.1|PRU76725 Pinus radiata endo-beta-1,4-glucanase (PrCel1) mRNA, complete cds
Length = 1928
Score = 81.7 bits (172), Expect(3) = 2e-025
Identities = 30/55 (54%), Positives = 38/55 (69%)
Frame = -3 / +2
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNG 460
CG + LR A+ Q++YILGDNP KMSY+VG+GS YP +HHRG+S P G
Sbjct: 1202 CGSMTFSPKRLRTIAKRQVDYILGDNPLKMSYMVGYGSHYPERIHHRGSSLPSKG 1366
Score = 46.0 bits (94), Expect(3) = 2e-025
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = -3 / +2
Query: 447 CTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRN 337
C G++ S +PN+L GA+VGGPD D F D RN
Sbjct: 1388 CNAGFQSLYSNAPNPNILVGAVVGGPDSMDRFPDDRN 1498
Score = 26.7 bits (52), Expect(3) = 2e-025
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3 / +2
Query: 705 LQYVVANSFLAALYADYMEA 646
LQYV ++SFL YA Y+ +
Sbjct: 1124 LQYVTSSSFLLFTYAKYLSS 1183
>gb|BX255006.1|BX255006 BX255006 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP109B04 similar to ENDOGLUCANASE PRECURSOR,
mRNA sequence
Length = 510
Score = 105 bits (223), Expect(2) = 1e-024
Identities = 40/69 (57%), Positives = 48/69 (69%)
Frame = -3 / +2
Query: 501 RHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRT 322
+HVHHRGAS P N +KYSC GG+KWRDS + +PN++ GAMV GPDK D F D R T
Sbjct: 2 KHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYT 181
Query: 321 SRRWSGNAG 295
+GNAG
Sbjct: 182 EPTLAGNAG 208
Score = 29.0 bits (57), Expect(2) = 1e-024
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +2
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 254 IDKNTMFSAVPPMFP 298
>gb|DT631580.1|DT631580 EST1146511 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFA34 3' end, mRNA sequence
Length = 854
Score = 68.0 bits (142), Expect(3) = 5e-024
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = -3 / +3
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGAS 475
C + + L A+SQI+YILGDNP+ SY+VG+GS YP+ VHHR +S
Sbjct: 255 CPGGAVQPSKLVSLAQSQIDYILGDNPRATSYMVGYGSNYPQQVHHRASS 404
Score = 57.9 bits (120), Expect(3) = 5e-024
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = -3 / +3
Query: 429 WRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNA 298
W SK +DPN+L GA+VGGPD+ND F D RN +T NA
Sbjct: 462 WYSSKGSDPNVLHGALVGGPDQNDNFADERNNYEQTEPATYNNA 593
Score = 23.5 bits (45), Expect(3) = 5e-024
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3 / +3
Query: 705 LQYVVANSFLAALYADYMEAVN 640
+Q+V + SFL +Y+D + A +
Sbjct: 177 IQFVTSASFLLTVYSDCLTATH 242
>gb|DR683696.1|DR683696 EST1073772 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAK25 3' end, mRNA sequence
Length = 848
Score = 68.0 bits (142), Expect(3) = 5e-024
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = -3 / +1
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGAS 475
C + + L A+SQI+YILGDNP+ SY+VG+GS YP+ VHHR +S
Sbjct: 247 CPGGAVQPSKLVSLAQSQIDYILGDNPRATSYMVGYGSNYPQQVHHRASS 396
Score = 57.9 bits (120), Expect(3) = 5e-024
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = -3 / +1
Query: 429 WRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNA 298
W SK +DPN+L GA+VGGPD+ND F D RN +T NA
Sbjct: 454 WYSSKGSDPNVLHGALVGGPDQNDNFADERNNYEQTEPATYNNA 585
Score = 23.5 bits (45), Expect(3) = 5e-024
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3 / +1
Query: 705 LQYVVANSFLAALYADYMEAVN 640
+Q+V + SFL +Y+D + A +
Sbjct: 169 IQFVTSASFLLTVYSDCLTATH 234
>gb|CV035007.1|CV035007 RTNACL1_13_B12.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_B12_A029 3', mRNA sequence
Length = 879
Score = 72.5 bits (152), Expect(2) = 1e-023
Identities = 27/50 (54%), Positives = 37/50 (74%)
Frame = -3 / -1
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGAS 475
C + ++L FA+SQI+YILGDNP+ SY+VG+GS YP+ VHHR +S
Sbjct: 801 CPGGAVQPSELLSFAQSQIDYILGDNPRATSYMVGYGSNYPQQVHHRASS 652
Score = 57.9 bits (120), Expect(2) = 1e-023
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = -3 / -1
Query: 429 WRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNA 298
W SK +DPN+L GA+VGGPD+ND F D RN +T NA
Sbjct: 594 WYSSKGSDPNVLHGALVGGPDQNDNFADERNNYEQTEPATYNNA 463
>gb|CO370530.1|CO370530 RTK1_68_B06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_68_B06_A029 5', mRNA sequence
Length = 708
Score = 77.6 bits (163), Expect(2) = 1e-023
Identities = 28/52 (53%), Positives = 37/52 (71%)
Frame = -3 / -2
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
CG T +R A+ Q++YILGDNP MSY+VG+GSK+P +HHRG+S P
Sbjct: 662 CGNIIATPTRIRTLAKRQVDYILGDNPLGMSYMVGYGSKFPERIHHRGSSLP 507
Score = 52.8 bits (109), Expect(2) = 1e-023
Identities = 21/40 (52%), Positives = 26/40 (65%)
Frame = -3 / -2
Query: 456 KYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRN 337
K SC G++ S +PN+L GA+VGGPD ND F D RN
Sbjct: 485 KISCNDGFQSLYSNGPNPNILVGAVVGGPDNNDRFSDERN 366
>gb|BX678371.1|BX678371 BX678371 RS Pinus pinaster cDNA clone RS08C02, mRNA sequence
Length = 570
Score = 75.3 bits (158), Expect(2) = 1e-023
Identities = 27/40 (67%), Positives = 34/40 (85%)
Frame = -3 / +2
Query: 588 EFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
+FA SQ++YILG+NP +MSY+VGFG YP+ VHHRGAS P
Sbjct: 2 KFAFSQVDYILGENPMRMSYLVGFGDNYPKQVHHRGASIP 121
Score = 55.1 bits (114), Expect(2) = 1e-023
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = -3 / +2
Query: 453 YSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRN 337
Y C GY W +SK +PN+ GA+VGGP +ND F D R+
Sbjct: 140 YDCNSGYVWFNSKSPNPNVATGALVGGPFQNDSFIDIRS 256
>gb|DR099221.1|DR099221 STRR1_54_B05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_54_B05_A033 3', mRNA sequence
Length = 670
Score = 78.0 bits (164), Expect(2) = 3e-023
Identities = 27/52 (51%), Positives = 39/52 (75%)
Frame = -3 / +1
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
CG +T +R A+ Q++YILGDNP +SY+VG+G+K+P H+HHRG+S P
Sbjct: 97 CGGVTVTPTRIRTLAKRQVDYILGDNPLGISYMVGYGAKFPEHIHHRGSSLP 252
Score = 51.0 bits (105), Expect(2) = 3e-023
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = -3 / +1
Query: 456 KYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRN 337
K SC G++ S +PN+L GA+VGGPD +D F D RN
Sbjct: 274 KISCNDGFEAFHSNAPNPNILVGAVVGGPDNSDHFPDDRN 393
>gb|BX682244.2|BX682244 BX682244 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 114A07 similar to Endoglucanase, mRNA
sequence
Length = 370
Score = 98.7 bits (209), Expect(2) = 8e-023
Identities = 38/66 (57%), Positives = 45/66 (68%)
Frame = -3 / +1
Query: 492 HHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRR 313
HHRGAS P N +KYSC GG+KWRDS + +PN++ GAMV GPDK D F D R T
Sbjct: 1 HHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPT 180
Query: 312 WSGNAG 295
+GNAG
Sbjct: 181 LAGNAG 198
Score = 29.0 bits (57), Expect(2) = 8e-023
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +1
Query: 238 VDKNTMFSAVPHNVP 194
+DKNTMFSAVP P
Sbjct: 244 IDKNTMFSAVPPMFP 288
>gb|U76756.1|PRU76756 Pinus radiata endo-beta-1,4-glucanase (PrCel2) mRNA, complete cds
Length = 1950
Score = 79.0 bits (166), Expect(2) = 1e-022
Identities = 27/52 (51%), Positives = 39/52 (75%)
Frame = -3 / +3
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
CG +T +R A+ Q++YILGDNP +MSY+VG+G+K+P +HHRG+S P
Sbjct: 1203 CGNMVVTPTRIRTLAKRQVDYILGDNPLRMSYMVGYGAKFPERIHHRGSSLP 1358
Score = 47.8 bits (98), Expect(2) = 1e-022
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = -3 / +3
Query: 447 CTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRN 337
C G++ S +PN L GA+VGGPD ND F D RN
Sbjct: 1389 CNDGFQSLYSNAPNPNRLVGAVVGGPDNNDHFSDERN 1499
>gb|DR072510.1|DR072510 RTDK1_26_F03.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_26_F03_A029 5', mRNA sequence
Length = 655
Score = 77.6 bits (163), Expect(2) = 2e-022
Identities = 27/52 (51%), Positives = 41/52 (78%)
Frame = -3 / -1
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
CG +T + LR A+ Q++YILGDNP K+SY+VG+G ++P+++HHRG+S P
Sbjct: 571 CGSIQVTPSRLRTAAKRQVDYILGDNPLKLSYMVGYGPRFPQYIHHRGSSLP 416
Score = 48.7 bits (100), Expect(2) = 2e-022
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -3 / -1
Query: 450 SCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSR 340
+C GG ++ SK +PNLL GA+VGGPD D + D+R
Sbjct: 388 TCKGGSQFFFSKNPNPNLLVGAVVGGPDSQDQYPDNR 278
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 388,639,047
Number of Sequences: 355925
Number of extensions: 4708669
Number of successful extensions: 29371
Number of sequences better than 1.0e-020: 88
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 15800707400
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)