TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5532690.2.1
(863 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF477697.1|CF477697 RTWW3_9_A09.g1_A022 Well-watered lob... 88 1e-055
gb|DR071863.1|DR071863 RTDK1_22_C03.g1_A029 Roots, dark Pin... 116 2e-049
gb|DR684227.1|DR684227 EST1074304 Normalized pine embryo li... 152 2e-049
gb|DR024294.1|DR024294 STRS1_63_H04.g1_A034 Shoot tip pitch... 100 2e-035
gb|DR693859.1|DR693859 EST1083949 Normalized pine embryo li... 86 4e-035
gb|DR688670.1|DR688670 EST1078755 Normalized pine embryo li... 83 6e-035
gb|DT636223.1|DT636223 EST1151154 Normalized pine embryo li... 86 1e-032
gb|BG039277.1|BG039277 NXSI_097_C07_F NXSI (Nsf Xylem Side ... 85 2e-028
gb|DR182064.1|DR182064 RTMNUT1_42_E04.g1_A029 Roots minus m... 83 3e-028
gb|CF476337.1|CF476337 RTWW2_22_G05.g1_A021 Well-watered lo... 83 3e-028
gb|BF517426.1|BF517426 NXSI_021_E05_F NXSI (Nsf Xylem Side ... 83 3e-028
gb|DR683518.1|DR683518 EST1073594 Normalized pine embryo li... 83 5e-027
gb|DR071782.1|DR071782 RTDK1_22_C03.b1_A029 Roots, dark Pin... 102 1e-025
gb|CO198543.1|CO198543 GEO1_14_B03.g1_A029 Root gravitropis... 87 3e-023
gb|DR050062.1|DR050062 RTBOR1_21_C01.b1_A029 Roots plus add... 102 3e-021
gb|BE123648.1|BE123648 NXNV_150_D11_F Nsf Xylem Normal wood... 71 5e-021
>gb|CF477697.1|CF477697 RTWW3_9_A09.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_9_A09_A022 5', mRNA sequence
Length = 736
Score = 87.7 bits (185), Expect(4) = 1e-055
Identities = 28/44 (63%), Positives = 37/44 (84%)
Frame = -1 / +3
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESF 732
+P+I ILW+GYPG+ GG L +ILFG++NPGG+LP+TWYPE F
Sbjct: 12 NPKICGILWVGYPGQAGGDALADILFGQHNPGGRLPVTWYPEEF 143
Score = 76.7 bits (161), Expect(4) = 1e-055
Identities = 32/76 (42%), Positives = 46/76 (60%)
Frame = -1 / +3
Query: 413 VLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVEITVDPCKHMSAANPEGKRVLLLGA 234
VLL S ++ G P K+L+GF +VH AG V ++D CK MS + G + LLLG+
Sbjct: 459 VLLLFASPPAIQGTPQKRLMGFRKVHVGAGGTERVHFSIDVCKDMSIVDGNGVKQLLLGS 638
Query: 233 HVLTVGDEEFELSIEL 186
H+L VGD + L +E+
Sbjct: 639 HLLHVGDTKHTLRVEI 686
Score = 68.0 bits (142), Expect(4) = 1e-055
Identities = 27/56 (48%), Positives = 34/56 (60%)
Frame = -1 / +3
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVVXXXXXXXXXXXXXXXXSLAPKKITVSL 558
+PMT+MNMR DP+ GYPGRTYRFYTG+ V APK +++SL
Sbjct: 153 VPMTNMNMRPDPATGYPGRTYRFYTGNSVYPFGYGLSYTTFSHSLVCAPKLVSLSL 320
Score = 41.8 bits (85), Expect(4) = 1e-055
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -1 / +3
Query: 482 CEALVFSVHVAVSNHGSMDGSHAVLLFA 399
C+ L+F +H V N GS DG H +LLFA
Sbjct: 393 CQGLLFDLHAEVHNTGSRDGDHVLLLFA 476
>gb|DR071863.1|DR071863 RTDK1_22_C03.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_C03_A029 5', mRNA sequence
Length = 644
Score = 116 bits (247), Expect(2) = 2e-049
Identities = 42/59 (71%), Positives = 48/59 (81%)
Frame = -1 / +3
Query: 815 GGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSRGYPGRTYRFYTGDVV 639
GGQ L EI+FG+YNPGG+LP+TWYP+ F IPMTDMNMR + GYPGRTYRFYTG V
Sbjct: 12 GGQALAEIIFGDYNPGGRLPVTWYPQDFVKIPMTDMNMRPNHHTGYPGRTYRFYTGKKV 188
Score = 102 bits (218), Expect(2) = 2e-049
Identities = 39/97 (40%), Positives = 58/97 (59%)
Frame = -1 / +3
Query: 482 CEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVEI 303
C L F + V NH +MDG HAVLL+++S ++ G P KQL+GF VH +++
Sbjct: 339 CRKLKFRCSILVRNHDNMDGRHAVLLYSKSPATHKGAPQKQLIGFRSVHVPGKQTTNITF 518
Query: 302 TVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSI 192
V PC H S G+R+L +G+H L VGD ++ +S+
Sbjct: 519 VVKPCDHFSTVEENGQRLLAIGSHSLLVGDTQYSVSL 629
Score = 84.5 bits (178), Expect(2) = 2e-024
Identities = 43/84 (51%), Positives = 49/84 (58%)
Frame = +1 / -2
Query: 565 TVIFFGAKEMLYEYLE*LKPYPKPYTTSPV*NRYVLPG*PREGSALMFISVMGIAVKDSG 744
++ +E YEY E*L P PK T PV*N YV PG*P MF+SV+GI K G
Sbjct: 262 SIFLMVVEENSYEYAE*LSP*PKSNTFFPV*NLYVRPG*PV**FGRMFMSVIGIFTKS*G 83
Query: 745 YQVIGSFPPGLYSPKRISGRTCPP 816
Y V G+ PPGL SPK IS PP
Sbjct: 82 YHVTGNLPPGL*SPKIISASA*PP 11
Score = 48.3 bits (99), Expect(2) = 2e-024
Identities = 30/79 (37%), Positives = 33/79 (41%)
Frame = +1 / -2
Query: 217 PTVRTWAPNRSTLLPSGLAALICLQGSTVISTLDALPAAVWTRSKPTSCFIGKPGTLDFD 396
PT R W P +L P L QG T L T P SCF G P + D
Sbjct: 604 PTNREWEPIAKSLCPFSSTVLK*SQGLTTNVILVVCLPGT*TLRNPISCFCGAPLWVAGD 425
Query: 397 LANRRTA*LPSMLP*FETA 453
L TA LPSML F T+
Sbjct: 424 LEYNNTACLPSMLSWFRTS 368
>gb|DR684227.1|DR684227 EST1074304 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAQ30 3' end, mRNA sequence
Length = 902
Score = 152 bits (326), Expect(3) = 2e-049
Identities = 53/75 (70%), Positives = 65/75 (86%)
Frame = -1 / +3
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
DP+IA ILW+GYPGE GGQ L E++FG+YNPGG+LP+TWYP++F IPM M+MR +PSR
Sbjct: 276 DPKIAGILWVGYPGEAGGQALAEVIFGDYNPGGRLPMTWYPQAFIKIPMNTMDMRPNPSR 455
Query: 683 GYPGRTYRFYTGDVV 639
GYPGRTYRFYTG+ V
Sbjct: 456 GYPGRTYRFYTGETV 500
Score = 94.5 bits (200), Expect(2) = 9e-021
Identities = 47/87 (54%), Positives = 54/87 (62%)
Frame = +1 / -2
Query: 601 EYLE*LKPYPKPYTTSPV*NRYVLPG*PREGSALMFISVMGIAVKDSGYQVIGSFPPGLY 780
E +E*L P P T SPV*NRYV PG P EG M + MGI +K GY VIG+ PPGL
Sbjct: 538 E*VE*LNP*PNSNTVSPV*NRYVRPGYPLEGLGRMSMVFMGIFMKA*GYHVIGNRPPGL* 359
Query: 781 SPKRISGRTCPPTSPGYPSQRMLAIRG 861
SPK S PP SPG P+ ++ AI G
Sbjct: 358 SPKITSASAWPPASPG*PTHKIPAILG 278
Score = 59.3 bits (123), Expect(3) = 2e-049
Identities = 22/59 (37%), Positives = 36/59 (61%)
Frame = -1 / +1
Query: 437 GSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVEITVDPCKHMSAANPE 261
G DGSH VL F ++ ++ P KQL+GF+RV+ +G++S V+ + PC +S +
Sbjct: 724 GPWDGSHVVLFFVKTPATHE*VPKKQLIGFQRVYVESGTSSEVKFLISPCDDLSTVTED 900
Score = 28.6 bits (56), Expect(2) = 9e-021
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +1 / -1
Query: 259 PSGLAALICLQGSTVISTLDALPAAVWTRSKPTSCFIGKPGTLDFDLANRRTA*LPSMLP 438
PS + L G T +P + TR KP +CF G + L T *LPS P
Sbjct: 902 PSSVTVLRSSHGLIRNLTSLDVPDST*TR*KPINCFFGTHS*VAGVLTKNNTT*LPSHGP 723
Score = 27.6 bits (54), Expect(3) = 2e-049
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1 / +3
Query: 527 RRDGLDFVKTEDIASCEALVFSVHVAVSNHGSM 429
R + + + + +CE F++ V V NHG M
Sbjct: 633 RENASNLIYVDAYTACEKAKFNLQVLVHNHGPM 731
>gb|DR024294.1|DR024294 STRS1_63_H04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_63_H04_A034 5', mRNA sequence
Length = 841
Score = 100 bits (213), Expect(2) = 2e-035
Identities = 40/97 (41%), Positives = 59/97 (60%)
Frame = -1 / -1
Query: 482 CEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVEI 303
C L F+ + V N+ M+GSHA+LL++RS ++ G P KQL+GF VH + V
Sbjct: 580 CRKLTFTSSIFVRNNDVMNGSHALLLYSRSPATHKGAPQKQLIGFRSVHVPGKQTAKVTF 401
Query: 302 TVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSI 192
V PC H+S G+RVL +G+H L VGD ++ +S+
Sbjct: 400 EVKPCDHLSTVKENGERVLTIGSHSLIVGDTQYPVSL 290
Score = 71.6 bits (150), Expect(2) = 2e-035
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = -1 / -1
Query: 749 WYPESFTAIPMTDMNMRADPSRGYPGRTYRFYTGDVV 639
WYP+ F IPMTDMNMR + GYPGRTYRFYTG V
Sbjct: 841 WYPQDFVKIPMTDMNMRPNHDTGYPGRTYRFYTGKKV 731
>gb|DR693859.1|DR693859 EST1083949 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE512 3' end, mRNA sequence
Length = 776
Score = 85.8 bits (181), Expect(3) = 4e-035
Identities = 26/43 (60%), Positives = 37/43 (86%)
Frame = -1 / +2
Query: 857 RIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFT 729
+I+ ILW+GYPG+ GG + +++FGEYNPGG+LP+TWYPE F+
Sbjct: 179 KISGILWVGYPGQAGGAAIADVIFGEYNPGGRLPVTWYPEEFS 307
Score = 57.9 bits (120), Expect(3) = 4e-035
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -1 / +2
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVV 639
+ MT+M MRADP+ GYPGRTYRFYTG V
Sbjct: 314 VNMTNMTMRADPATGYPGRTYRFYTGQTV 400
Score = 46.9 bits (96), Expect(3) = 4e-035
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = -1 / +2
Query: 482 CEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAA 327
C+ + V V V+N G+ DGSH + LF+ + S+ P KQL+ F+ V+ A
Sbjct: 551 CDNMSLQVDVDVNNIGNRDGSHVLFLFSTAPSNNVDAPNKQLIDFKNVYVEA 706
>gb|DR688670.1|DR688670 EST1078755 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC913 3' end, mRNA sequence
Length = 898
Score = 83.1 bits (175), Expect(4) = 6e-035
Identities = 25/44 (56%), Positives = 36/44 (81%)
Frame = -1 / +3
Query: 857 RIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTA 726
+I+ ILW+GYPG+ GG + +++FG YNPGG+LP+TWYP+ F A
Sbjct: 189 KISGILWVGYPGQAGGAAIADVIFGAYNPGGRLPVTWYPQDFAA 320
Score = 62.5 bits (130), Expect(4) = 6e-035
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = -1 / +3
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVV 639
IPMT+MNMR DP+ GYPGRTYRFYTG V
Sbjct: 324 IPMTNMNMRPDPATGYPGRTYRFYTGKTV 410
Score = 35.4 bits (71), Expect(4) = 6e-035
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1 / +3
Query: 482 CEALVFSVHVAVSNHGSMDGSHAVLLFARSKS 387
C+ L VHV VSN G +G H + LF+ S
Sbjct: 561 CQNLFLEVHVEVSNVGRREGGHVLFLFSSPPS 656
Score = 27.6 bits (54), Expect(4) = 6e-035
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -1 / +2
Query: 281 MSAANPEGKRVLLLGAHVLTVGDEEFELSIE 189
+S + G R L +G+H+L +GD + +S++
Sbjct: 758 LSIVDKTGTRKLPVGSHLLHIGDIQHSVSLQ 850
>gb|DT636223.1|DT636223 EST1151154 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGP35 3' end, mRNA sequence
Length = 684
Score = 85.8 bits (181), Expect(3) = 1e-032
Identities = 26/43 (60%), Positives = 37/43 (86%)
Frame = -1 / +2
Query: 857 RIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFT 729
+I+ ILW+GYPG+ GG + +++FGEYNPGG+LP+TWYPE F+
Sbjct: 179 KISGILWVGYPGQAGGAAIADVIFGEYNPGGRLPVTWYPEEFS 307
Score = 57.9 bits (120), Expect(3) = 1e-032
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -1 / +2
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVV 639
+ MT+M MRADP+ GYPGRTYRFYTG V
Sbjct: 314 VNMTNMTMRADPAAGYPGRTYRFYTGQTV 400
Score = 37.7 bits (76), Expect(3) = 1e-032
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -1 / +2
Query: 482 CEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLV 354
C+ + V V V+N G+ DG H + LF+ + S+ P KQL+
Sbjct: 551 CDNMSLQVDVDVNNIGNRDGRHVLFLFSTAPSNNVDAPNKQLI 679
>gb|BG039277.1|BG039277 NXSI_097_C07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_097_C07 5' similar to Arabidopsis thaliana
sequence At5g64570 beta-xylosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 340
Score = 84.9 bits (179), Expect(2) = 2e-028
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = -1 / +1
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESF 732
+P+I ILW+GYPG+ GG L +ILFG++NP G+LP+TWYPE F
Sbjct: 37 NPKICGILWVGYPGQAGGDALADILFGQHNPSGRLPVTWYPEEF 168
Score = 61.1 bits (127), Expect(2) = 2e-028
Identities = 21/27 (77%), Positives = 25/27 (92%)
Frame = -1 / +1
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGD 645
+PMT+MNMR DP+ GYPGRTYRFYTG+
Sbjct: 178 VPMTNMNMRPDPATGYPGRTYRFYTGN 258
>gb|DR182064.1|DR182064 RTMNUT1_42_E04.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_42_E04_A029 5', mRNA sequence
Length = 839
Score = 83.1 bits (175), Expect(2) = 3e-028
Identities = 25/44 (56%), Positives = 36/44 (81%)
Frame = -1 / +1
Query: 857 RIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTA 726
+I+ ILW+GYPG+ GG + +++FG YNPGG+LP+TWYP+ F A
Sbjct: 514 KISGILWVGYPGQAGGAAIADVIFGAYNPGGRLPVTWYPQDFAA 645
Score = 62.5 bits (130), Expect(2) = 3e-028
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = -1 / +1
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVV 639
IPMT+MNMR DP+ GYPGRTYRFYTG V
Sbjct: 649 IPMTNMNMRPDPATGYPGRTYRFYTGKTV 735
>gb|CF476337.1|CF476337 RTWW2_22_G05.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_22_G05_A021 5', mRNA sequence
Length = 671
Score = 83.1 bits (175), Expect(2) = 3e-028
Identities = 25/44 (56%), Positives = 36/44 (81%)
Frame = -1 / +3
Query: 857 RIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTA 726
+I+ ILW+GYPG+ GG + +++FG YNPGG+LP+TWYP+ F A
Sbjct: 366 KISGILWVGYPGQAGGAAIADVIFGAYNPGGRLPVTWYPQDFAA 497
Score = 62.5 bits (130), Expect(2) = 3e-028
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = -1 / +3
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVV 639
IPMT+MNMR DP+ GYPGRTYRFYTG V
Sbjct: 501 IPMTNMNMRPDPATGYPGRTYRFYTGKTV 587
>gb|BF517426.1|BF517426 NXSI_021_E05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_021_E05 5' similar to Arabidopsis thaliana
sequence At5g64570 beta-xylosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 501
Score = 83.1 bits (175), Expect(2) = 3e-028
Identities = 25/44 (56%), Positives = 36/44 (81%)
Frame = -1 / +2
Query: 857 RIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTA 726
+I+ ILW+GYPG+ GG + +++FG YNPGG+LP+TWYP+ F A
Sbjct: 89 KISGILWVGYPGQAGGAAIADVIFGAYNPGGRLPVTWYPQDFAA 220
Score = 62.5 bits (130), Expect(2) = 3e-028
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = -1 / +2
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVV 639
IPMT+MNMR DP+ GYPGRTYRFYTG V
Sbjct: 224 IPMTNMNMRPDPATGYPGRTYRFYTGKTV 310
>gb|DR683518.1|DR683518 EST1073594 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAI16 3' end, mRNA sequence
Length = 804
Score = 83.1 bits (175), Expect(2) = 5e-027
Identities = 25/44 (56%), Positives = 36/44 (81%)
Frame = -1 / +1
Query: 857 RIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTA 726
+I+ ILW+GYPG+ GG + +++FG YNPGG+LP+TWYP+ F A
Sbjct: 505 KISGILWVGYPGQAGGAAIADVIFGAYNPGGRLPVTWYPQDFAA 636
Score = 58.3 bits (121), Expect(2) = 5e-027
Identities = 22/29 (75%), Positives = 24/29 (82%)
Frame = -1 / +1
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVV 639
IPMT+M MR DP+ GYPGRTYRFYTG V
Sbjct: 640 IPMTNMIMRPDPATGYPGRTYRFYTGKTV 726
>gb|DR071782.1|DR071782 RTDK1_22_C03.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_C03_A029 3', mRNA sequence
Length = 769
Score = 102 bits (218), Expect(2) = 1e-025
Identities = 39/97 (40%), Positives = 58/97 (59%)
Frame = -1 / +2
Query: 482 CEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVEI 303
C L F + V NH +MDG HAVLL+++S ++ G P KQL+GF VH +++
Sbjct: 203 CRKLKFRCSILVRNHDNMDGRHAVLLYSKSPATHKGAPQKQLIGFRSVHVPGKQTTNITF 382
Query: 302 TVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSI 192
V PC H S G+R+L +G+H L VGD ++ +S+
Sbjct: 383 VVKPCDHFSTVEENGQRLLAIGSHSLIVGDTQYSVSL 493
Score = 36.3 bits (73), Expect(2) = 1e-025
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -1 / +2
Query: 683 GYPGRTYRFYTGDVV 639
GYPGRTYRFYTG V
Sbjct: 8 GYPGRTYRFYTGKKV 52
>gb|CO198543.1|CO198543 GEO1_14_B03.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_14_B03_A029 5', mRNA sequence
Length = 635
Score = 86.8 bits (183), Expect(3) = 3e-023
Identities = 32/47 (68%), Positives = 36/47 (76%)
Frame = -1 / +1
Query: 779 YNPGGKLPITWYPESFTAIPMTDMNMRADPSRGYPGRTYRFYTGDVV 639
Y GG+LP+TWYP+ F IPMTDMNMR + GYPGRTYRFYTG V
Sbjct: 172 YCLGGRLPVTWYPQDFVKIPMTDMNMRPNHHTGYPGRTYRFYTGKKV 312
Score = 31.8 bits (63), Expect(3) = 3e-023
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1 / +1
Query: 425 GSHAVLLFARSKSSVPGFPIKQLVGFERVH 336
G LL+++S + G P KQL+GF VH
Sbjct: 523 GGMQXLLYSKSPCTHKGAPQKQLIGFRSVH 612
Score = 30.9 bits (61), Expect(3) = 3e-023
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1 / +3
Query: 482 CEALVFSVHVAVSNHGSMDGSHAVLL 405
C L F + V NH +MDG HA ++
Sbjct: 465 CRKLKFRCSILVRNHDNMDGRHAXVV 542
>gb|DR050062.1|DR050062 RTBOR1_21_C01.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_21_C01_A029 3', mRNA sequence
Length = 804
Score = 102 bits (218), Expect = 3e-021
Identities = 39/97 (40%), Positives = 58/97 (59%)
Frame = -1 / +3
Query: 482 CEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVEI 303
C L F + V NH +MDG HAVLL+++S ++ G P KQL+GF VH +++
Sbjct: 123 CRKLKFRCSILVRNHDNMDGRHAVLLYSKSPATHKGAPQKQLIGFRSVHVPGKQTTNITF 302
Query: 302 TVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSI 192
V PC H S G+R+L +G+H L VGD ++ +S+
Sbjct: 303 VVKPCDHFSTVEENGQRLLAIGSHSLIVGDTQYSVSL 413
>gb|BE123648.1|BE123648 NXNV_150_D11_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_150_D11 5' similar to Arabidopsis thaliana
sequence At5g64570 beta-xylosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 246
Score = 70.7 bits (148), Expect(3) = 5e-021
Identities = 22/36 (61%), Positives = 29/36 (80%)
Frame = -1 / +1
Query: 833 GYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTA 726
GYPGE GG L +I++G +NPGG+LP+TWYP+ F A
Sbjct: 1 GYPGEAGGDALADIIYGHHNPGGRLPVTWYPQDFVA 108
Score = 49.2 bits (101), Expect(3) = 5e-021
Identities = 19/28 (67%), Positives = 20/28 (71%)
Frame = -1 / +1
Query: 722 PMTDMNMRADPSRGYPGRTYRFYTGDVV 639
PMT+MNMR D GYP TYRFYTG V
Sbjct: 115 PMTNMNMRPDLXTGYPXXTYRFYTGRTV 198
Score = 18.0 bits (33), Expect(3) = 5e-021
Identities = 4/5 (80%), Positives = 5/5 (100%)
Frame = -3 / +3
Query: 639 VWLWI 625
+WLWI
Sbjct: 204 IWLWI 218
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 504,285,778
Number of Sequences: 355925
Number of extensions: 8166174
Number of successful extensions: 58573
Number of sequences better than 1.0e-020: 19
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 12670646575
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)