TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5352090.2.1
(915 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR015097.1|DR015097 STRS1_1_B05.g1_A034 Shoot tip pitch ... 89 2e-038
gb|CF402055.1|CF402055 RTWW1_16_A10.g1_A015 Well-watered lo... 84 3e-038
gb|CF672703.1|CF672703 RTCNT1_73_H09.b1_A029 Root control P... 84 3e-038
gb|CF388364.1|CF388364 RTDR2_2_B10.g1_A021 Loblolly pine ro... 87 4e-038
gb|CO368510.1|CO368510 RTK1_41_C06.b1_A029 Roots minus pota... 77 1e-035
gb|AW437952.1|AW437952 ST78G04 Pine TriplEx shoot tip libra... 87 9e-031
gb|DR687398.1|DR687398 EST1077480 Normalized pine embryo li... 83 2e-028
gb|DT634194.1|DT634194 EST1149125 Normalized pine embryo li... 83 3e-028
gb|DT633915.1|DT633915 EST1148846 Normalized pine embryo li... 83 3e-028
gb|DR687613.1|DR687613 EST1077695 Normalized pine embryo li... 83 8e-028
gb|DT634300.1|DT634300 EST1149231 Normalized pine embryo li... 83 9e-028
gb|BE431370.1|BE431370 NXNV_181_D04_F Nsf Xylem Normal wood... 74 6e-026
gb|CO161684.1|CO161684 FLD1_30_B04.g1_A029 Root flooded Pin... 64 1e-025
gb|BQ699264.1|BQ699264 NXRV121_E06_F NXRV (Nsf Xylem Root w... 62 1e-025
gb|CO167423.1|CO167423 FLD1_68_H01.g1_A029 Root flooded Pin... 59 1e-024
gb|DR010807.1|DR010807 HEAT1_1_A04.g1_A029 Root at 37 C for... 60 8e-022
gb|CX715022.1|CX715022 RTPQ1_30_A01.b1_A032 Roots treated w... 88 4e-021
>gb|DR015097.1|DR015097 STRS1_1_B05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_1_B05_A034 5', mRNA sequence
Length = 853
Score = 88.6 bits (187), Expect(3) = 2e-038
Identities = 36/54 (66%), Positives = 43/54 (79%)
Frame = +3 / +2
Query: 258 APVPGDGATRSGPGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
AP P + P PS+V++ADPKPRLRWT +LHERFVDAV+QLGGP+KATPK
Sbjct: 5 APQPVLTGSSHYPCDPSVVVSADPKPRLRWTPELHERFVDAVSQLGGPDKATPK 166
Score = 67.0 bits (140), Expect(3) = 2e-038
Identities = 27/39 (69%), Positives = 33/39 (84%)
Frame = +2 / +2
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGS 520
++ K++LR MGVKGLTL+HLKSHLQKYRLGKQ +E S
Sbjct: 152 KATPKSVLREMGVKGLTLYHLKSHLQKYRLGKQPHREVS 268
Score = 64.8 bits (135), Expect(3) = 2e-022
Identities = 31/55 (56%), Positives = 34/55 (61%)
Frame = -3 / -2
Query: 418 FGVAFSGPPSWATASTKRSWRSAVHRSLGLGSAVSTRLGPPGPERVAPSPGTGAS 254
FGVA SGPPS TAST RSW S VH GLGSA +T LG G + G GA+
Sbjct: 165 FGVALSGPPS*LTASTNRSWSSGVHLRRGLGSAETTTLGSHG*WEEPVNTGCGAA 1
Score = 53.3 bits (110), Expect(3) = 2e-022
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = -1 / -2
Query: 513 SLPDCFPNLYF*RWLFK*KRVRPLTPIVLK 424
SL CFP+LYF*RWLFK RVRP TPI L+
Sbjct: 261 SLWGCFPSLYF*RWLFKWYRVRPFTPISLR 172
Score = 42.8 bits (87), Expect(3) = 2e-038
Identities = 16/24 (66%), Positives = 22/24 (91%)
Frame = +2 / +2
Query: 605 ESQEVKEALRAQMEVQRRLHEQVE 676
E+ ++ +ALRAQ+EVQRRLHEQ+E
Sbjct: 356 EAMQIADALRAQIEVQRRLHEQLE 427
Score = 25.4 bits (49), Expect(3) = 2e-022
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3 / -1
Query: 670 LFMQSSLDFHLRSQCFFNFLAFFHILGRNSRGH 572
L M+SSL+F+L SQ N F GH
Sbjct: 421 LLMESSLNFYLSSQSISNLHCFMIWCDAAIPGH 323
>gb|CF402055.1|CF402055 RTWW1_16_A10.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_16_A10_A015 5', mRNA sequence
Length = 700
Score = 83.5 bits (176), Expect(3) = 3e-038
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +3 / +3
Query: 297 GGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
G +LVLT DPKPRLRWT +LH+RFVDAV QLGGP+KATPK
Sbjct: 168 GDAALVLTTDPKPRLRWTVELHDRFVDAVNQLGGPDKATPK 290
Score = 68.0 bits (142), Expect(3) = 3e-023
Identities = 30/42 (71%), Positives = 31/42 (73%)
Frame = -3 / -1
Query: 421 IFGVAFSGPPSWATASTKRSWRSAVHRSLGLGSAVSTRLGPP 296
+FGVA SGPPS TASTKRS S VHRSLGLGS V TR P
Sbjct: 292 VFGVALSGPPS*LTASTKRSCSSTVHRSLGLGSVVRTRAASP 167
Score = 64.3 bits (134), Expect(3) = 3e-038
Identities = 25/37 (67%), Positives = 31/37 (83%)
Frame = +2 / +3
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKE 514
++ K I++ MGVKGLTL+HLKSHLQK+RLGKQ KE
Sbjct: 276 KATPKTIMKVMGVKGLTLYHLKSHLQKFRLGKQPHKE 386
Score = 49.6 bits (102), Expect(3) = 3e-038
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = +2 / +3
Query: 539 SYLLDAQSGMSVSPRVPAQDMKESQEVKEALRAQMEVQRRLHEQVE 676
S L + + S R+ Q+M E + EALR QMEVQRRLHE +E
Sbjct: 417 SRLSEGHGASTSSSRMMGQEMNEGFHISEALRMQMEVQRRLHEHLE 554
Score = 43.7 bits (89), Expect(3) = 3e-023
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = -1 / -1
Query: 675 STCSCSLLWTSICALSASLTSWLSFISWAGTLGDTLI 565
S CSCSLL TSIC LSAS SFISW L D ++
Sbjct: 553 SRCSCSLL*TSICILSASDMWKPSFISWPIILEDEVL 443
Score = 35.0 bits (70), Expect(3) = 3e-023
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = -1 / -1
Query: 513 SLPDCFPNLYF*RWLFK*KRVRPLTPIVLKI 421
SL CFP+L F*R L + RV PLTPI I
Sbjct: 385 SL*GCFPSLNF*R*LLRW*RVSPLTPITFII 293
>gb|CF672703.1|CF672703 RTCNT1_73_H09.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_73_H09_A029 3', mRNA sequence
Length = 612
Score = 83.5 bits (176), Expect(3) = 3e-038
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +3 / -2
Query: 297 GGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
G +LVLT DPKPRLRWT +LH+RFVDAV QLGGP+KATPK
Sbjct: 533 GDAALVLTTDPKPRLRWTVELHDRFVDAVNQLGGPDKATPK 411
Score = 68.0 bits (142), Expect(3) = 3e-023
Identities = 30/42 (71%), Positives = 31/42 (73%)
Frame = -3 / +1
Query: 421 IFGVAFSGPPSWATASTKRSWRSAVHRSLGLGSAVSTRLGPP 296
+FGVA SGPPS TASTKRS S VHRSLGLGS V TR P
Sbjct: 409 VFGVALSGPPS*LTASTKRSCSSTVHRSLGLGSVVRTRAASP 534
Score = 64.3 bits (134), Expect(3) = 3e-038
Identities = 25/37 (67%), Positives = 31/37 (83%)
Frame = +2 / -2
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKE 514
++ K I++ MGVKGLTL+HLKSHLQK+RLGKQ KE
Sbjct: 425 KATPKTIMKVMGVKGLTLYHLKSHLQKFRLGKQPHKE 315
Score = 49.6 bits (102), Expect(3) = 3e-038
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = +2 / -2
Query: 539 SYLLDAQSGMSVSPRVPAQDMKESQEVKEALRAQMEVQRRLHEQVE 676
S L + + S R+ Q+M E + EALR QMEVQRRLHE +E
Sbjct: 284 SRLSEGHGASTSSSRMMGQEMNEGFHISEALRMQMEVQRRLHEHLE 147
Score = 43.7 bits (89), Expect(3) = 3e-023
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = -1 / +1
Query: 675 STCSCSLLWTSICALSASLTSWLSFISWAGTLGDTLI 565
S CSCSLL TSIC LSAS SFISW L D ++
Sbjct: 148 SRCSCSLL*TSICILSASDMWKPSFISWPIILEDEVL 258
Score = 35.0 bits (70), Expect(3) = 3e-023
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = -1 / +1
Query: 513 SLPDCFPNLYF*RWLFK*KRVRPLTPIVLKI 421
SL CFP+L F*R L + RV PLTPI I
Sbjct: 316 SL*GCFPSLNF*R*LLRW*RVSPLTPITFII 408
>gb|CF388364.1|CF388364 RTDR2_2_B10.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_2_B10_A021 5', mRNA
sequence
Length = 732
Score = 87.2 bits (184), Expect(3) = 4e-038
Identities = 33/42 (78%), Positives = 39/42 (92%)
Frame = +3 / +2
Query: 294 PGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
P PS+V++ADPKPRLRWT +LHERFVDAV+QLGGP+KATPK
Sbjct: 176 PCDPSVVVSADPKPRLRWTPELHERFVDAVSQLGGPDKATPK 301
Score = 67.0 bits (140), Expect(3) = 4e-038
Identities = 27/39 (69%), Positives = 33/39 (84%)
Frame = +2 / +2
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGS 520
++ K++LR MGVKGLTL+HLKSHLQKYRLGKQ +E S
Sbjct: 287 KATPKSVLREMGVKGLTLYHLKSHLQKYRLGKQPHREVS 403
Score = 62.9 bits (131), Expect(3) = 8e-022
Identities = 28/42 (66%), Positives = 29/42 (69%)
Frame = -3 / -1
Query: 418 FGVAFSGPPSWATASTKRSWRSAVHRSLGLGSAVSTRLGPPG 293
FGVA SGPPS TAST RSW S VH GLGSA +T LG G
Sbjct: 300 FGVALSGPPS*LTASTNRSWSSGVHLRRGLGSAETTTLGSHG 175
Score = 53.3 bits (110), Expect(3) = 8e-022
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = -1 / -1
Query: 513 SLPDCFPNLYF*RWLFK*KRVRPLTPIVLK 424
SL CFP+LYF*RWLFK RVRP TPI L+
Sbjct: 396 SLWGCFPSLYF*RWLFKWYRVRPFTPISLR 307
Score = 42.8 bits (87), Expect(3) = 4e-038
Identities = 16/24 (66%), Positives = 22/24 (91%)
Frame = +2 / +2
Query: 605 ESQEVKEALRAQMEVQRRLHEQVE 676
E+ ++ +ALRAQ+EVQRRLHEQ+E
Sbjct: 491 EAMQIADALRAQIEVQRRLHEQLE 562
Score = 25.4 bits (49), Expect(3) = 8e-022
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3 / -3
Query: 670 LFMQSSLDFHLRSQCFFNFLAFFHILGRNSRGH 572
L M+SSL+F+L SQ N F GH
Sbjct: 556 LLMESSLNFYLSSQSISNLHCFMIWCDAAIPGH 458
>gb|CO368510.1|CO368510 RTK1_41_C06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_41_C06_A029 3', mRNA sequence
Length = 865
Score = 77.1 bits (162), Expect(3) = 1e-035
Identities = 28/37 (75%), Positives = 34/37 (91%)
Frame = +3 / -2
Query: 309 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
+V++ DPKPRL+WT +LHERFVDAV QLGGP+KATPK
Sbjct: 696 VVVSTDPKPRLKWTPELHERFVDAVTQLGGPDKATPK 586
Score = 69.8 bits (146), Expect(3) = 1e-035
Identities = 27/42 (64%), Positives = 35/42 (83%)
Frame = +2 / -2
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQS 529
++ K++LR MGVKGLTL+HLKSHLQKYRLGKQ+ KE + +
Sbjct: 600 KATPKSVLRVMGVKGLTLYHLKSHLQKYRLGKQTCKESNSDT 475
Score = 41.8 bits (85), Expect(3) = 1e-035
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +2 / -2
Query: 596 DMKESQEVKEALRAQMEVQRRLHEQVE 676
+ KE + EAL AQ+EVQ+RLHEQ+E
Sbjct: 402 NQKEGMHITEALNAQVEVQKRLHEQLE 322
>gb|AW437952.1|AW437952 ST78G04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST78G04, mRNA sequence
Length = 349
Score = 87.2 bits (184), Expect(2) = 9e-031
Identities = 33/42 (78%), Positives = 39/42 (92%)
Frame = +3 / +1
Query: 294 PGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
P PS+V++ADPKPRLRWT +LHERFVDAV+QLGGP+KATPK
Sbjct: 67 PCDPSVVVSADPKPRLRWTPELHERFVDAVSQLGGPDKATPK 192
Score = 67.0 bits (140), Expect(2) = 9e-031
Identities = 27/39 (69%), Positives = 33/39 (84%)
Frame = +2 / +1
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGS 520
++ K++LR MGVKGLTL+HLKSHLQKYRLGKQ +E S
Sbjct: 178 KATPKSVLREMGVKGLTLYHLKSHLQKYRLGKQPHREVS 294
>gb|DR687398.1|DR687398 EST1077480 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABR96 3' end, mRNA sequence
Length = 694
Score = 82.6 bits (174), Expect(3) = 2e-028
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = +3 / +1
Query: 294 PGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
P LVL+ DPKPRLRWTA+LHERFVDAV +LGGP+KATPK
Sbjct: 205 PTETGLVLSTDPKPRLRWTAELHERFVDAVTKLGGPDKATPK 330
Score = 59.3 bits (123), Expect(3) = 2e-028
Identities = 24/37 (64%), Positives = 29/37 (78%)
Frame = +2 / +1
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKE 514
++ K + MGV+GLTL+HLKSHLQKYRLGKQ KE
Sbjct: 316 KATPKAVRTRMGVEGLTLYHLKSHLQKYRLGKQPHKE 426
Score = 26.3 bits (51), Expect(3) = 2e-028
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +3 / +2
Query: 639 RWKSKEDCMNKW 674
+W+ +EDC N W
Sbjct: 596 KWRYREDCTNSW 631
>gb|DT634194.1|DT634194 EST1149125 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG331 3' end, mRNA sequence
Length = 921
Score = 82.6 bits (174), Expect(3) = 3e-028
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = +3 / +3
Query: 294 PGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
P LVL+ DPKPRLRWTA+LHERFVDAV +LGGP+KATPK
Sbjct: 213 PTETGLVLSTDPKPRLRWTAELHERFVDAVTKLGGPDKATPK 338
Score = 59.3 bits (123), Expect(3) = 3e-028
Identities = 24/37 (64%), Positives = 29/37 (78%)
Frame = +2 / +3
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKE 514
++ K + MGV+GLTL+HLKSHLQKYRLGKQ KE
Sbjct: 324 KATPKAVRTRMGVEGLTLYHLKSHLQKYRLGKQPHKE 434
Score = 26.3 bits (51), Expect(3) = 3e-028
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +3 / +1
Query: 639 RWKSKEDCMNKW 674
+W+ +EDC N W
Sbjct: 604 KWRYREDCTNSW 639
>gb|DT633915.1|DT633915 EST1148846 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG017 3' end, mRNA sequence
Length = 930
Score = 82.6 bits (174), Expect(3) = 3e-028
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = +3 / +3
Query: 294 PGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
P LVL+ DPKPRLRWTA+LHERFVDAV +LGGP+KATPK
Sbjct: 213 PTETGLVLSTDPKPRLRWTAELHERFVDAVTKLGGPDKATPK 338
Score = 59.3 bits (123), Expect(3) = 3e-028
Identities = 24/37 (64%), Positives = 29/37 (78%)
Frame = +2 / +3
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKE 514
++ K + MGV+GLTL+HLKSHLQKYRLGKQ KE
Sbjct: 324 KATPKAVRTRMGVEGLTLYHLKSHLQKYRLGKQPHKE 434
Score = 26.3 bits (51), Expect(3) = 3e-028
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +3 / +1
Query: 639 RWKSKEDCMNKW 674
+W+ +EDC N W
Sbjct: 604 KWRYREDCTNSW 639
>gb|DR687613.1|DR687613 EST1077695 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABU53 3' end, mRNA sequence
Length = 739
Score = 82.6 bits (174), Expect(3) = 8e-028
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = +3 / +1
Query: 294 PGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
P LVL+ DPKPRLRWTA+LHERFVDAV +LGGP+KATPK
Sbjct: 205 PTETGLVLSTDPKPRLRWTAELHERFVDAVTKLGGPDKATPK 330
Score = 59.3 bits (123), Expect(3) = 8e-028
Identities = 24/37 (64%), Positives = 29/37 (78%)
Frame = +2 / +1
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKE 514
++ K + MGV+GLTL+HLKSHLQKYRLGKQ KE
Sbjct: 316 KATPKAVRTRMGVEGLTLYHLKSHLQKYRLGKQPHKE 426
Score = 24.0 bits (46), Expect(3) = 8e-028
Identities = 5/12 (41%), Positives = 9/12 (75%)
Frame = +3 / +2
Query: 639 RWKSKEDCMNKW 674
+W+ +EDC + W
Sbjct: 596 KWRYREDCTDSW 631
>gb|DT634300.1|DT634300 EST1149231 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG449 3' end, mRNA sequence
Length = 776
Score = 82.6 bits (174), Expect(3) = 9e-028
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = +3 / +3
Query: 294 PGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
P LVL+ DPKPRLRWTA+LHERFVDAV +LGGP+KATPK
Sbjct: 213 PTETGLVLSTDPKPRLRWTAELHERFVDAVTKLGGPDKATPK 338
Score = 59.3 bits (123), Expect(3) = 9e-028
Identities = 24/37 (64%), Positives = 29/37 (78%)
Frame = +2 / +3
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKE 514
++ K + MGV+GLTL+HLKSHLQKYRLGKQ KE
Sbjct: 324 KATPKAVRTRMGVEGLTLYHLKSHLQKYRLGKQPHKE 434
Score = 24.0 bits (46), Expect(3) = 9e-028
Identities = 5/12 (41%), Positives = 9/12 (75%)
Frame = +3 / +1
Query: 639 RWKSKEDCMNKW 674
+W+ +EDC + W
Sbjct: 604 KWRYREDCTDSW 639
>gb|BE431370.1|BE431370 NXNV_181_D04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_181_D04 5' similar to Arabidopsis thaliana
sequence At3g24120 transfactor like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 361
Score = 73.9 bits (155), Expect(3) = 6e-026
Identities = 33/56 (58%), Positives = 39/56 (69%)
Frame = +2 / +1
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEGSEQSKDASYLLDAQSGMS 571
++ K I+R MGVKGLTL+HLKSHLQKYRLGKQ KE S+QS + L G S
Sbjct: 49 KATPKTIMRAMGVKGLTLYHLKSHLQKYRLGKQPFKEFSDQSNKDASCLTDGQGAS 216
Score = 49.6 bits (102), Expect(3) = 6e-026
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = +3 / +1
Query: 357 LHERFVDAVAQLGGPEKATPK 419
LHERFVDAV QLGGP+KATPK
Sbjct: 1 LHERFVDAVTQLGGPDKATPK 63
Score = 32.2 bits (64), Expect(3) = 6e-026
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2 / +1
Query: 575 SPRVPAQDMKESQEVKEALRAQMEVQRRLHEQVE 676
S ++ D+ ES + LRAQMEVQ EQ+E
Sbjct: 226 SSKMINXDVNESXXITXXLRAQMEVQXSXXEQLE 327
>gb|CO161684.1|CO161684 FLD1_30_B04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_30_B04_A029 5', mRNA sequence
Length = 885
Score = 64.3 bits (134), Expect(3) = 1e-025
Identities = 25/37 (67%), Positives = 31/37 (83%)
Frame = +2 / +2
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGKQSGKE 514
++ K I++ MGVKGLTL+HLKSHLQK+RLGKQ KE
Sbjct: 41 KATPKTIMKVMGVKGLTLYHLKSHLQKFRLGKQPHKE 151
Score = 49.6 bits (102), Expect(3) = 1e-025
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = +2 / +2
Query: 539 SYLLDAQSGMSVSPRVPAQDMKESQEVKEALRAQMEVQRRLHEQVE 676
S L + + S R+ Q+M E + EALR QMEVQRRLHE +E
Sbjct: 182 SRLSEGHGASTSSSRMMGQEMNEGFHISEALRMQMEVQRRLHEHLE 319
Score = 40.9 bits (83), Expect(3) = 1e-025
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3 / +2
Query: 366 RFVDAVAQLGGPEKATPK 419
RFVDAV QLGGP+KATPK
Sbjct: 2 RFVDAVNQLGGPDKATPK 55
>gb|BQ699264.1|BQ699264 NXRV121_E06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV121_E06 5' similar to Arabidopsis thaliana
sequence At2g01060 transfactor-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 557
Score = 61.6 bits (128), Expect(3) = 1e-025
Identities = 22/28 (78%), Positives = 26/28 (92%)
Frame = +3 / +2
Query: 336 RLRWTADLHERFVDAVAQLGGPEKATPK 419
RLRWT DLH+RFVDAV +LGGP++ATPK
Sbjct: 8 RLRWTPDLHQRFVDAVTELGGPDRATPK 91
Score = 54.2 bits (112), Expect(3) = 1e-025
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +2 / +2
Query: 416 KNILRTMGVKGLTLFHLKSHLQKYRLGK 499
K +LR MGV GLT++H+KSHLQKYRL K
Sbjct: 89 KGVLRVMGVTGLTIYHVKSHLQKYRLSK 172
Score = 39.1 bits (79), Expect(3) = 1e-025
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = +2 / +2
Query: 614 EVKEALRAQMEVQRRLHEQVE 676
++ EAL+ QMEVQ+RLHEQ+E
Sbjct: 263 QISEALQMQMEVQKRLHEQIE 325
>gb|CO167423.1|CO167423 FLD1_68_H01.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_68_H01_A029 5', mRNA sequence
Length = 857
Score = 58.8 bits (122), Expect(3) = 1e-024
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +3 / +2
Query: 330 KPRLRWTADLHERFVDAVAQLGGPEKATPK 419
KPRLRWT +LHERF++AV +L G EKATPK
Sbjct: 215 KPRLRWTPELHERFIEAVKKLHGAEKATPK 304
Score = 50.1 bits (103), Expect(3) = 1e-024
Identities = 17/32 (53%), Positives = 26/32 (81%)
Frame = +2 / +2
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGK 499
++ K +L+ M V+GLT++H+KSHLQKYR+ K
Sbjct: 290 KATPKGVLKLMNVEGLTIYHVKSHLQKYRIAK 385
Score = 42.3 bits (86), Expect(3) = 1e-024
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +2 / +2
Query: 596 DMKESQEVKEALRAQMEVQRRLHEQVE 676
D+K ++ EALR QME+Q++LHEQ+E
Sbjct: 479 DLKAGMQITEALRLQMEMQKKLHEQLE 559
>gb|DR010807.1|DR010807 HEAT1_1_A04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_1_A04_A029 5', mRNA sequence
Length = 757
Score = 60.2 bits (125), Expect(3) = 8e-022
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +3 / +2
Query: 330 KPRLRWTADLHERFVDAVAQLGGPEKATPK 419
K RLRWT DLHERFV+AV QLGG ++ATPK
Sbjct: 143 KQRLRWTPDLHERFVNAVTQLGGADRATPK 232
Score = 43.7 bits (89), Expect(3) = 8e-022
Identities = 15/28 (53%), Positives = 23/28 (82%)
Frame = +2 / +2
Query: 416 KNILRTMGVKGLTLFHLKSHLQKYRLGK 499
K +LR MG++ LT++ +KSHLQK+RL +
Sbjct: 230 KGVLRMMGIQWLTIYQVKSHLQKFRLAR 313
Score = 37.7 bits (76), Expect(3) = 8e-022
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +2 / +2
Query: 596 DMKESQEVKEALRAQMEVQRRLHEQVE 676
D + ++ +AL+ QMEVQ RLHEQ+E
Sbjct: 386 DARSGLQITDALKMQMEVQTRLHEQLE 466
>gb|CX715022.1|CX715022 RTPQ1_30_A01.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_30_A01_A032 3', mRNA sequence
Length = 408
Score = 88.1 bits (186), Expect(2) = 4e-021
Identities = 34/42 (80%), Positives = 36/42 (85%)
Frame = +3 / -1
Query: 294 PGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPK 419
PG LVLT DPKPRLRWT +LHERFVDAV QLGGP+KATPK
Sbjct: 171 PGDACLVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPK 46
Score = 33.6 bits (67), Expect(2) = 4e-021
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2 / -1
Query: 404 ESNTKNILRTMGVKGLTLFH 463
++ K I+R MGVKGLTL+H
Sbjct: 60 KATPKTIMRAMGVKGLTLYH 1
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 423,260,756
Number of Sequences: 355925
Number of extensions: 5768146
Number of successful extensions: 47230
Number of sequences better than 1.0e-020: 20
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 13443991720
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)