TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3871923.2.1
(1030 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR694004.1|DR694004 EST1084094 Normalized pine embryo li... 315 8e-088
gb|CF667687.1|CF667687 RTCNT1_31_H09.g1_A029 Root control P... 315 3e-085
gb|DT633478.1|DT633478 EST1148409 Normalized pine embryo li... 303 3e-084
gb|DR686433.1|DR686433 EST1076511 Normalized pine embryo li... 297 2e-082
gb|CF672023.1|CF672023 RTCNT1_60_G07.g1_A029 Root control P... 249 7e-069
gb|BF220713.1|BF220713 NXCI_149_F10_F NXCI (Nsf Xylem Compr... 132 4e-030
>gb|DR694004.1|DR694004 EST1084094 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE690 3' end, mRNA sequence
Length = 760
Score = 315 bits (682), Expect(2) = 8e-088
Identities = 122/200 (61%), Positives = 157/200 (78%)
Frame = +2 / +3
Query: 92 CIGTIYLDVGTKYTSILARAACSAFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVA 271
CIGTIY +VGT Y +ILAR +C+++V GF+TFMSIGGFPSFVE+MKVFQRERLNGHYGV
Sbjct: 159 CIGTIYYNVGTDYNAILARGSCASYVSGFMTFMSIGGFPSFVEDMKVFQRERLNGHYGVL 338
Query: 272 AFVISNTISATPFLILICFLSGTICYFMVRLHPGFEHYIFFVLNLYASVTVVESLMMAIA 451
AFVI+NT+S+ P+L L+ +SGTI Y+MV+LHPGF HY++FVLNL++ + VVESLMM +A
Sbjct: 339 AFVIANTLSSMPYLALVATISGTITYYMVKLHPGFTHYLYFVLNLFSCMAVVESLMMTVA 518
Query: 452 SVIPNFLMXXXXXXXXXXXFMLVSGYFRLPYDIPKPFWRYPMQYISFHYWALQGQCQNDM 631
+++PNFLM +MLV+G+FR D+PKP WRYPM YISF+ WALQGQ +ND+
Sbjct: 519 TLVPNFLMGIITGAGILGIYMLVAGFFRFLKDLPKPVWRYPMSYISFNSWALQGQYKNDL 698
Query: 632 KGLAVDNQDPDQPKIPGDFI 691
G+ Q PKI G++I
Sbjct: 699 LGIDFKPQTEGMPKISGEYI 758
Score = 135 bits (289), Expect(2) = 2e-039
Identities = 70/130 (53%), Positives = 82/130 (63%)
Frame = -2 / -1
Query: 471 RKFGMTLAIAIIKLSTTVTLAYRFKTKKM*CSKPGWRRTMK*HMVPDKKHIRIRNGVAEM 292
+K G +A IIKLSTT RF TK * PG TM * +VPD R G+ +
Sbjct: 538 KKLGTKVATVIIKLSTTAMQEKRFSTKYK**VNPGCSFTM**VIVPDIVATSARYGIEDS 359
Query: 291 VLLMTNAATP*CPFSRSRWKTFISSTNEGNPPMDMNVTNPKTNAEQAALARMDVYLVPTS 112
VL MT A+TP*CPF+ SR KTFISST EGNPPMDMNV NP+T Q LA++ + VPT
Sbjct: 358 VLAMTKASTP*CPFNLSR*KTFISSTKEGNPPMDMNVMNPET*DAQEPLAKIAL*SVPTL 179
Query: 111 R*IVPMQTVT 82
+VPMQ VT
Sbjct: 178 *YMVPMQIVT 149
Score = 80.8 bits (170), Expect(2) = 5e-028
Identities = 33/72 (45%), Positives = 50/72 (69%)
Frame = -1 / -3
Query: 628 VVLALALQCPVVEADVLHGVSPKGLRDVVWKSEVARDQHEYSLNPGPYDDTHEEIWNDTG 449
VVL LALQCP VEA++ HG++P ++ K++ + +QH YS N DD+H+EI + G
Sbjct: 695 VVLVLALQCPRVEANI*HGIAPNWFGEIFQKTKKSSNQHVYSQNSCSCDDSHQEIGHQGG 516
Query: 448 NRHHQALDHRNA 413
+ HHQAL++ +A
Sbjct: 515 HCHHQALNNGHA 480
Score = 79.4 bits (167), Expect(2) = 4e-029
Identities = 32/66 (48%), Positives = 41/66 (62%)
Frame = +1 / +2
Query: 430 ELDDGDCQCHSKFPHGYHHRGRDSGNIHAGLWLLQTSIRHPEALLEIPHAVHQLPLLGTA 609
ELDD ++F G HHR R+SGNIHAG W+ S R P+ L + H ++ L LLG A
Sbjct: 497 ELDDDSGHLGAQFLDGNHHRSRNSGNIHAGCWIFSFSERSPQTSLALSHVIY*LQLLGIA 676
Query: 610 GPVPER 627
GP+ ER
Sbjct: 677 GPIQER 694
Score = 69.3 bits (145), Expect(2) = 4e-029
Identities = 32/89 (35%), Positives = 46/89 (51%)
Frame = +1 / +2
Query: 142 GQGCLLRVRLWVRYVHVHWRIPFVR*RNEGLPAGTAERALRCRGVCHQQHHLSHAVPDSD 321
GQ L + W+ +HVHWRIPF EG A E LR CH QH + +A+ +
Sbjct: 209 GQRFLCVLCFWIHDIHVHWRIPFFCGGYEGFSA*KVEWTLRSACFCHCQHAVFNAISGTC 388
Query: 322 MLLVGNHMLLHGAPPSWLRALHLLRLEPV 408
+ ++ LLHG SW+ +L + EP+
Sbjct: 389 RNNIRDNHLLHGETASWIYSLFIFCAEPL 475
Score = 67.0 bits (140), Expect(2) = 5e-028
Identities = 27/67 (40%), Positives = 46/67 (68%)
Frame = -1 / -3
Query: 289 VADDKRRDTVVPVQPFPLEDLHFFNERRESSNGHERNEPKDERGAGSPGQDGCVFGADVQ 110
V +DK + +VV +QPF L++LH ++RRESSNGHE +E ++ G+ GQ+ + ++V
Sbjct: 356 VGNDKSKHSVVSIQPFTLKNLHILHKRRESSNGHECHESRNIGRTGTSGQNSIIISSNVV 177
Query: 109 VDRADAN 89
V ++A+
Sbjct: 176 VYGSNAD 156
Score = 47.8 bits (98), Expect(2) = 2e-039
Identities = 21/41 (51%), Positives = 25/41 (60%)
Frame = -2 / -1
Query: 636 PFMSFWHWPCSAQ*WKLMYCMGYLQKGFGMSYGSLK*PETS 514
P SF +WPC+AQ KL+Y MG Q G G S+ K P TS
Sbjct: 703 PSKSFLYWPCNAQELKLIYDMG*RQTGLGRSFRKRKNPATS 581
Score = 29.9 bits (59), Expect(2) = 8e-088
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1 / +3
Query: 7 TLTXRSFINMSRDFG 51
TLT RSF+NM+RD G
Sbjct: 72 TLTKRSFVNMTRDVG 116
>gb|CF667687.1|CF667687 RTCNT1_31_H09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_31_H09_A029 5', mRNA sequence
Length = 797
Score = 315 bits (683), Expect = 3e-085
Identities = 128/191 (67%), Positives = 148/191 (77%)
Frame = +2 / +3
Query: 290 TISATPFLILICFLSGTICYFMVRLHPGFEHYIFFVLNLYASVTVVESLMMAIASVIPNF 469
T+S P+L+LI +SGTICY+MV LHPG HYIFF LYASVTVVESLMMAIASV+PNF
Sbjct: 27 TVSGMPYLLLISVISGTICYYMVGLHPGIVHYIFFTAGLYASVTVVESLMMAIASVVPNF 206
Query: 470 LMXXXXXXXXXXXFMLVSGYFRLPYDIPKPFWRYPMQYISFHYWALQGQCQNDMKGLAVD 649
LM FMLVSGYFRLP DIPKP WRYPM YISFHYWALQGQ QND+ GL D
Sbjct: 207 LMGIIIGAGIQGIFMLVSGYFRLPKDIPKPVWRYPMSYISFHYWALQGQYQNDLLGLEFD 386
Query: 650 NQDPDQPKIPGDFILKYIFQINVDRSKWIDLSVIFSMIFIYRILFFLMIKINEDXLPWIR 829
NQ PKI G++++ +FQI+V RSKW DLSV+FSMI IYRI+F +MIKI+ED PWIR
Sbjct: 387 NQYSFMPKISGEYVVTQVFQIDVKRSKWWDLSVLFSMIIIYRIIFLVMIKISEDVTPWIR 566
Query: 830 GHIARKRMQKK 862
G IAR+ ++KK
Sbjct: 567 GFIARRTLKKK 599
Score = 111 bits (237), Expect(2) = 5e-040
Identities = 45/78 (57%), Positives = 56/78 (71%)
Frame = -2 / -2
Query: 747 TDRSIHLERSTLIWKMYLRMKSPGILGWSGSWLSTARPFMSFWHWPCSAQ*WKLMYCMGY 568
T+RS H +R T IW ++ SP ILG + WLS +RP SFW+ PC AQ*WKL+Y +GY
Sbjct: 484 TERSHHFDRFTSIWNTWVTTYSPDILGMNEYWLSNSRPNKSFWY*PCKAQ*WKLIYDIGY 305
Query: 567 LQKGFGMSYGSLK*PETS 514
L GFG+S GSLK*P+TS
Sbjct: 304 LHTGFGISLGSLK*PDTS 251
Score = 73.9 bits (155), Expect(2) = 5e-040
Identities = 36/61 (59%), Positives = 44/61 (72%)
Frame = -2 / -2
Query: 471 RKFGMTLAIAIIKLSTTVTLAYRFKTKKM*CSKPGWRRTMK*HMVPDKKHIRIRNGVAEM 292
RKFG TLA+AII+LSTTVTLAY+ KKM* + PG R TM * +VPD +R + G+ E
Sbjct: 208 RKFGTTLAMAIIRLSTTVTLAYKPAVKKM*WTIPGCRPTM**QIVPDITEMRSKYGIPET 29
Query: 291 V 289
V
Sbjct: 28 V 26
>gb|DT633478.1|DT633478 EST1148409 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFV33 3' end, mRNA sequence
Length = 848
Score = 303 bits (656), Expect(2) = 3e-084
Identities = 116/183 (63%), Positives = 149/183 (81%)
Frame = +2 / +1
Query: 92 CIGTIYLDVGTKYTSILARAACSAFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVA 271
CIGTIY +VGT Y +ILAR +C+++V GF+TFMSIGGFPSFVE+MKVFQRERLNGHYGV
Sbjct: 271 CIGTIYYNVGTDYNAILARGSCASYVSGFMTFMSIGGFPSFVEDMKVFQRERLNGHYGVL 450
Query: 272 AFVISNTISATPFLILICFLSGTICYFMVRLHPGFEHYIFFVLNLYASVTVVESLMMAIA 451
AFVI+NT+S+ P+L L+ +SGTI Y+MV+LHPGF HY++FVLNL++ + VVESLMM +A
Sbjct: 451 AFVIANTLSSMPYLALVATISGTITYYMVKLHPGFTHYLYFVLNLFSCMAVVESLMMTVA 630
Query: 452 SVIPNFLMXXXXXXXXXXXFMLVSGYFRLPYDIPKPFWRYPMQYISFHYWALQGQCQNDM 631
+++PNFLM +MLV+G+FR D+PKP WRYPM YISF+ WALQGQ +ND+
Sbjct: 631 TLVPNFLMGIITGAGILGIYMLVAGFFRFLKDLPKPVWRYPMSYISFNSWALQGQYKNDL 810
Query: 632 KGL 640
G+
Sbjct: 811 LGI 819
Score = 135 bits (289), Expect(2) = 2e-039
Identities = 70/130 (53%), Positives = 82/130 (63%)
Frame = -2 / -1
Query: 471 RKFGMTLAIAIIKLSTTVTLAYRFKTKKM*CSKPGWRRTMK*HMVPDKKHIRIRNGVAEM 292
+K G +A IIKLSTT RF TK * PG TM * +VPD R G+ +
Sbjct: 650 KKLGTKVATVIIKLSTTAMQEKRFSTKYK**VNPGCSFTM**VIVPDIVATSARYGIEDS 471
Query: 291 VLLMTNAATP*CPFSRSRWKTFISSTNEGNPPMDMNVTNPKTNAEQAALARMDVYLVPTS 112
VL MT A+TP*CPF+ SR KTFISST EGNPPMDMNV NP+T Q LA++ + VPT
Sbjct: 470 VLAMTKASTP*CPFNLSR*KTFISSTKEGNPPMDMNVMNPET*DAQEPLAKIAL*SVPTL 291
Query: 111 R*IVPMQTVT 82
+VPMQ VT
Sbjct: 290 *YMVPMQIVT 261
Score = 80.8 bits (170), Expect(2) = 6e-028
Identities = 33/72 (45%), Positives = 50/72 (69%)
Frame = -1 / -3
Query: 628 VVLALALQCPVVEADVLHGVSPKGLRDVVWKSEVARDQHEYSLNPGPYDDTHEEIWNDTG 449
VVL LALQCP VEA++ HG++P ++ K++ + +QH YS N DD+H+EI + G
Sbjct: 807 VVLVLALQCPRVEANI*HGIAPNWFGEIFQKTKKSSNQHVYSQNSCSCDDSHQEIGHQGG 628
Query: 448 NRHHQALDHRNA 413
+ HHQAL++ +A
Sbjct: 627 HCHHQALNNGHA 592
Score = 79.4 bits (167), Expect(2) = 4e-029
Identities = 32/66 (48%), Positives = 41/66 (62%)
Frame = +1 / +3
Query: 430 ELDDGDCQCHSKFPHGYHHRGRDSGNIHAGLWLLQTSIRHPEALLEIPHAVHQLPLLGTA 609
ELDD ++F G HHR R+SGNIHAG W+ S R P+ L + H ++ L LLG A
Sbjct: 609 ELDDDSGHLGAQFLDGNHHRSRNSGNIHAGCWIFSFSERSPQTSLALSHVIY*LQLLGIA 788
Query: 610 GPVPER 627
GP+ ER
Sbjct: 789 GPIQER 806
Score = 69.3 bits (145), Expect(2) = 4e-029
Identities = 32/89 (35%), Positives = 46/89 (51%)
Frame = +1 / +3
Query: 142 GQGCLLRVRLWVRYVHVHWRIPFVR*RNEGLPAGTAERALRCRGVCHQQHHLSHAVPDSD 321
GQ L + W+ +HVHWRIPF EG A E LR CH QH + +A+ +
Sbjct: 321 GQRFLCVLCFWIHDIHVHWRIPFFCGGYEGFSA*KVEWTLRSACFCHCQHAVFNAISGTC 500
Query: 322 MLLVGNHMLLHGAPPSWLRALHLLRLEPV 408
+ ++ LLHG SW+ +L + EP+
Sbjct: 501 RNNIRDNHLLHGETASWIYSLFIFCAEPL 587
Score = 67.0 bits (140), Expect(2) = 6e-028
Identities = 27/67 (40%), Positives = 46/67 (68%)
Frame = -1 / -3
Query: 289 VADDKRRDTVVPVQPFPLEDLHFFNERRESSNGHERNEPKDERGAGSPGQDGCVFGADVQ 110
V +DK + +VV +QPF L++LH ++RRESSNGHE +E ++ G+ GQ+ + ++V
Sbjct: 468 VGNDKSKHSVVSIQPFTLKNLHILHKRRESSNGHECHESRNIGRTGTSGQNSIIISSNVV 289
Query: 109 VDRADAN 89
V ++A+
Sbjct: 288 VYGSNAD 268
Score = 47.8 bits (98), Expect(2) = 2e-039
Identities = 21/41 (51%), Positives = 25/41 (60%)
Frame = -2 / -1
Query: 636 PFMSFWHWPCSAQ*WKLMYCMGYLQKGFGMSYGSLK*PETS 514
P SF +WPC+AQ KL+Y MG Q G G S+ K P TS
Sbjct: 815 PSKSFLYWPCNAQELKLIYDMG*RQTGLGRSFRKRKNPATS 693
Score = 29.9 bits (59), Expect(2) = 3e-084
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1 / +1
Query: 7 TLTXRSFINMSRDFG 51
TLT RSF+NM+RD G
Sbjct: 184 TLTKRSFVNMTRDVG 228
>gb|DR686433.1|DR686433 EST1076511 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABG02 3' end, mRNA sequence
Length = 798
Score = 297 bits (642), Expect(2) = 2e-082
Identities = 114/178 (64%), Positives = 145/178 (81%)
Frame = +2 / +2
Query: 92 CIGTIYLDVGTKYTSILARAACSAFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVA 271
CIGTIY +VGT Y +ILAR +C+++V GF+TFMSIGGFPSFVE+MKVFQRERLNGHYGV
Sbjct: 263 CIGTIYYNVGTDYNAILARGSCASYVSGFMTFMSIGGFPSFVEDMKVFQRERLNGHYGVL 442
Query: 272 AFVISNTISATPFLILICFLSGTICYFMVRLHPGFEHYIFFVLNLYASVTVVESLMMAIA 451
AFVI+NT+S+ P+L L+ +SGTI Y+MV+LHPGF HY++FVLNL++ + VVESLMM +A
Sbjct: 443 AFVIANTLSSMPYLALVATISGTITYYMVKLHPGFTHYLYFVLNLFSCMAVVESLMMTVA 622
Query: 452 SVIPNFLMXXXXXXXXXXXFMLVSGYFRLPYDIPKPFWRYPMQYISFHYWALQGQCQN 625
+++PNFLM +MLV+G+FR D+PKP WRYPM YISF+ WALQGQ +N
Sbjct: 623 TLVPNFLMGIITGAGILGIYMLVAGFFRFLKDLPKPVWRYPMSYISFNSWALQGQYKN 796
Score = 135 bits (289), Expect(2) = 9e-039
Identities = 70/130 (53%), Positives = 82/130 (63%)
Frame = -2 / -1
Query: 471 RKFGMTLAIAIIKLSTTVTLAYRFKTKKM*CSKPGWRRTMK*HMVPDKKHIRIRNGVAEM 292
+K G +A IIKLSTT RF TK * PG TM * +VPD R G+ +
Sbjct: 642 KKLGTKVATVIIKLSTTAMQEKRFSTKYK**VNPGCSFTM**VIVPDIVATSARYGIEDS 463
Query: 291 VLLMTNAATP*CPFSRSRWKTFISSTNEGNPPMDMNVTNPKTNAEQAALARMDVYLVPTS 112
VL MT A+TP*CPF+ SR KTFISST EGNPPMDMNV NP+T Q LA++ + VPT
Sbjct: 462 VLAMTKASTP*CPFNLSR*KTFISSTKEGNPPMDMNVMNPET*DAQEPLAKIAL*SVPTL 283
Query: 111 R*IVPMQTVT 82
+VPMQ VT
Sbjct: 282 *YMVPMQIVT 253
Score = 79.4 bits (167), Expect(2) = 4e-029
Identities = 32/66 (48%), Positives = 41/66 (62%)
Frame = +1 / +1
Query: 430 ELDDGDCQCHSKFPHGYHHRGRDSGNIHAGLWLLQTSIRHPEALLEIPHAVHQLPLLGTA 609
ELDD ++F G HHR R+SGNIHAG W+ S R P+ L + H ++ L LLG A
Sbjct: 601 ELDDDSGHLGAQFLDGNHHRSRNSGNIHAGCWIFSFSERSPQTSLALSHVIY*LQLLGIA 780
Query: 610 GPVPER 627
GP+ ER
Sbjct: 781 GPIQER 798
Score = 79.0 bits (166), Expect(2) = 2e-027
Identities = 32/71 (45%), Positives = 49/71 (69%)
Frame = -1 / -3
Query: 625 VLALALQCPVVEADVLHGVSPKGLRDVVWKSEVARDQHEYSLNPGPYDDTHEEIWNDTGN 446
VL LALQCP VEA++ HG++P ++ K++ + +QH YS N DD+H+EI + G+
Sbjct: 796 VLVLALQCPRVEANI*HGIAPNWFGEIFQKTKKSSNQHVYSQNSCSCDDSHQEIGHQGGH 617
Query: 445 RHHQALDHRNA 413
HHQAL++ +A
Sbjct: 616 CHHQALNNGHA 584
Score = 69.3 bits (145), Expect(2) = 4e-029
Identities = 32/89 (35%), Positives = 46/89 (51%)
Frame = +1 / +1
Query: 142 GQGCLLRVRLWVRYVHVHWRIPFVR*RNEGLPAGTAERALRCRGVCHQQHHLSHAVPDSD 321
GQ L + W+ +HVHWRIPF EG A E LR CH QH + +A+ +
Sbjct: 313 GQRFLCVLCFWIHDIHVHWRIPFFCGGYEGFSA*KVEWTLRSACFCHCQHAVFNAISGTC 492
Query: 322 MLLVGNHMLLHGAPPSWLRALHLLRLEPV 408
+ ++ LLHG SW+ +L + EP+
Sbjct: 493 RNNIRDNHLLHGETASWIYSLFIFCAEPL 579
Score = 67.0 bits (140), Expect(2) = 2e-027
Identities = 27/67 (40%), Positives = 46/67 (68%)
Frame = -1 / -3
Query: 289 VADDKRRDTVVPVQPFPLEDLHFFNERRESSNGHERNEPKDERGAGSPGQDGCVFGADVQ 110
V +DK + +VV +QPF L++LH ++RRESSNGHE +E ++ G+ GQ+ + ++V
Sbjct: 460 VGNDKSKHSVVSIQPFTLKNLHILHKRRESSNGHECHESRNIGRTGTSGQNSIIISSNVV 281
Query: 109 VDRADAN 89
V ++A+
Sbjct: 280 VYGSNAD 260
Score = 46.0 bits (94), Expect(2) = 9e-039
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = -2 / -1
Query: 627 SFWHWPCSAQ*WKLMYCMGYLQKGFGMSYGSLK*PETS 514
SF +WPC+AQ KL+Y MG Q G G S+ K P TS
Sbjct: 798 SFLYWPCNAQELKLIYDMG*RQTGLGRSFRKRKNPATS 685
Score = 29.9 bits (59), Expect(2) = 2e-082
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1 / +2
Query: 7 TLTXRSFINMSRDFG 51
TLT RSF+NM+RD G
Sbjct: 176 TLTKRSFVNMTRDVG 220
>gb|CF672023.1|CF672023 RTCNT1_60_G07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_60_G07_A029 5', mRNA sequence
Length = 768
Score = 249 bits (538), Expect(2) = 7e-069
Identities = 100/128 (78%), Positives = 111/128 (86%)
Frame = +2 / +2
Query: 92 CIGTIYLDVGTKYTSILARAACSAFVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVA 271
CIGTIY +GT Y SILAR AC++FVFGFVTFMSIGGFPSFVE+MKVFQRERLNGHYGV
Sbjct: 359 CIGTIYFRIGTSYESILARGACASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVV 538
Query: 272 AFVISNTISATPFLILICFLSGTICYFMVRLHPGFEHYIFFVLNLYASVTVVESLMMAIA 451
AFV+ NT+S P+L+LI +SGTICY+MV LHPG HYIFF LYASVTVVESLMMAIA
Sbjct: 539 AFVVGNTVSGMPYLLLISVISGTICYYMVGLHPGIVHYIFFTAGLYASVTVVESLMMAIA 718
Query: 452 SVIPNFLM 475
SV+PNFLM
Sbjct: 719 SVVPNFLM 742
Score = 170 bits (365), Expect(2) = 2e-042
Identities = 84/136 (61%), Positives = 95/136 (69%)
Frame = -2 / -1
Query: 471 RKFGMTLAIAIIKLSTTVTLAYRFKTKKM*CSKPGWRRTMK*HMVPDKKHIRIRNGVAEM 292
RKFG TLA+AII+LSTTVTLAY+ KKM* + PG R TM * +VPD +R + G+ E
Sbjct: 738 RKFGTTLAMAIIRLSTTVTLAYKPAVKKM*WTIPGCRPTM**QIVPDITEMRSKYGIPET 559
Query: 291 VLLMTNAATP*CPFSRSRWKTFISSTNEGNPPMDMNVTNPKTNAEQAALARMDVYLVPTS 112
VL T A TP*CP S SR KTFISSTNEG PPMD+ VT PKT QA LA +D LVP
Sbjct: 558 VLPTTKATTP*CPLSLSR*KTFISSTNEGKPPMDIKVTKPKTKEAQAPLANIDS*LVPIL 379
Query: 111 R*IVPMQTVTRR*XXS 64
+*IVPMQ V R * S
Sbjct: 378 K*IVPMQMVRRI*MTS 331
Score = 101 bits (215), Expect = 9e-021
Identities = 47/122 (38%), Positives = 67/122 (54%)
Frame = +1 / +1
Query: 124 QIHIHPGQGCLLRVRLWVRYVHVHWRIPFVR*RNEGLPAGTAERALRCRGVCHQQHHLSH 303
Q+ I+ G+ L +R W+RY++VHW + V *R EG A A+ L C +C QH +
Sbjct: 391 QL*INIGKRSLCFLRFWLRYLYVHWGLSLVC*RYEGFSARKAQWTLWCSSLCSGQHSFRN 570
Query: 304 AVPDSDMLLVGNHMLLHGAPPSWLRALHLLRLEPVRQRYGGRELDDGDCQCHSKFPHGYH 483
A+ S + N++LLHG S LH L + +RY G E DG C ++ PHGY+
Sbjct: 571 AILASHFSYIRNNLLLHGWSASRNCPLHFLYSRFICKRYSGGESYDGHS*CCAELPHGYN 750
Query: 484 HR 489
HR
Sbjct: 751 HR 756
Score = 32.7 bits (65), Expect(2) = 7e-069
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +1 / +2
Query: 1 ACTLTXRSFINMSRDFG 51
A TLT RSFINMSRD G
Sbjct: 266 AFTLTRRSFINMSRDVG 316
Score = 23.1 bits (44), Expect(2) = 2e-042
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3 / -1
Query: 50 PKSRDMLMKERLVRV 6
P S DMLMK+ VRV
Sbjct: 315 PTSLDMLMKDLRVRV 271
>gb|BF220713.1|BF220713 NXCI_149_F10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_149_F10 5' similar to Arabidopsis
thaliana sequence At2g28070 putative ABC transporter see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 529
Score = 132 bits (283), Expect = 4e-030
Identities = 52/158 (32%), Positives = 86/158 (54%)
Frame = +2 / +3
Query: 164 FVFGFVTFMSIGGFPSFVEEMKVFQRERLNGHYGVAAFVISNTISATPFLILICFLSGTI 343
F F + MSI GFP ++E+KVF E+ N H G F + N ++ PFL L+ +
Sbjct: 15 FFVSFTSLMSISGFPVHIKEIKVFTHEKSNRHSGAFVFSLGNLFASIPFLFLVSLSCSLV 194
Query: 344 CYFMVRLHPGFEHYIFFVLNLYASVTVVESLMMAIASVIPNFLMXXXXXXXXXXXFMLVS 523
YF++ + F +++F+LN + + + E L+M IAS++P MLV+
Sbjct: 195 IYFILGMRSAFSLFMYFMLNFFMCLLINEGLLMVIASILPEIFEGILTMVFLQGIMMLVA 374
Query: 524 GYFRLPYDIPKPFWRYPMQYISFHYWALQGQCQNDMKG 637
YFRL ++PKP +Y + Y++FH +A+ +N+ G
Sbjct: 375 XYFRLXDELPKPVXKYXVSYLAFHTYAIXXLLENEYTG 488
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 515,287,576
Number of Sequences: 355925
Number of extensions: 7260700
Number of successful extensions: 46259
Number of sequences better than 1.0e-020: 7
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 15479337080
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)