TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829517.2.1
(913 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT632591.1|DT632591 EST1147522 Normalized pine embryo li... 220 3e-073
gb|DR685091.1|DR685091 EST1075168 Normalized pine embryo li... 220 3e-070
gb|DR013060.1|DR013060 HEAT1_16_F02.g1_A029 Root at 37 C fo... 207 1e-060
gb|DR099279.1|DR099279 STRR1_54_A05.g1_A033 Stem Response R... 207 1e-060
gb|AW289652.1|AW289652 NXNV003C03F Nsf Xylem Normal wood Ve... 157 1e-047
gb|CD028190.1|CD028190 NXNV003C03 Nsf Xylem Normal wood Ver... 157 1e-047
gb|DR098980.1|DR098980 STRR1_49_H03.b1_A033 Stem Response R... 131 1e-046
gb|AA556901.1|AA556901 743 Loblolly pine C Pinus taeda cDNA... 175 4e-043
gb|DR024662.1|DR024662 STRS1_66_C10.g1_A034 Shoot tip pitch... 153 1e-036
gb|CR393266.1|CR393266 CR393266 RN Pinus pinaster cDNA clon... 139 3e-032
gb|DR012976.1|DR012976 HEAT1_16_F02.b1_A029 Root at 37 C fo... 78 7e-030
gb|AW289984.1|AW289984 NXNV009A09F Nsf Xylem Normal wood Ve... 66 4e-026
gb|CD026642.1|CD026642 NXNV009A09 Nsf Xylem Normal wood Ver... 66 4e-026
gb|DR024602.1|DR024602 STRS1_66_C10.b1_A034 Shoot tip pitch... 59 3e-025
gb|CR392991.1|CR392991 CR392991 RN Pinus pinaster cDNA clon... 112 3e-024
gb|DR099215.1|DR099215 STRR1_54_A05.b1_A033 Stem Response R... 52 8e-022
>gb|DT632591.1|DT632591 EST1147522 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFL64 3' end, mRNA sequence
Length = 865
Score = 220 bits (475), Expect(3) = 3e-073
Identities = 90/145 (62%), Positives = 112/145 (77%)
Frame = +1 / +3
Query: 28 RLMLYSYWRSSCSHRARIALNLKGVDYEYKAVNLLKGEQSDPEFVKLNPMKFVPALVDGS 207
RL LYSYWRSSCS R RIALNLKG+ YEYKAVN+++GEQ E+ KLNP++FVP LVDG
Sbjct: 228 RLKLYSYWRSSCSWRVRIALNLKGLPYEYKAVNIVQGEQFSQEYTKLNPLQFVPTLVDGD 407
Query: 208 SVIGDSYAITLYLEDKYPEPPLLPQDLQKKALNHQIASIVASGIQPLHNLTVLRFIDQKV 387
++I DS AI LYLEDK+PE PLLP D KA++ Q ASI+ S IQPL NL +L I++K+
Sbjct: 408 TIISDSLAILLYLEDKFPEHPLLPDDHHLKAISLQAASIIGSNIQPLQNLVILNLIEEKL 587
Query: 388 GAGESVLWTQQQIERGFTAIENLIQ 462
GA E + W + IERGFTA+E L++
Sbjct: 588 GAEERLAWPKPFIERGFTALEKLLK 662
Score = 88.1 bits (186), Expect(3) = 5e-026
Identities = 44/75 (58%), Positives = 49/75 (65%)
Frame = -3 / -1
Query: 254 LSSKYSVIA*ESPITELPSTNAGTNFIGLSLTNSGSDCSPLRRFTALYS*STPLRLRAMR 75
LSSKY+ +A ES I PSTN GTN G +L S +CSP FTALYS P RLRA+
Sbjct: 454 LSSKYNNMASESEIIVSPSTNVGTN*RGFNLVYS*LNCSPCTIFTALYSYGNPFRLRAIL 275
Query: 74 ARWEHELRQYEYSIS 30
R EHELRQ EYS S
Sbjct: 274 TRQEHELRQ*EYSFS 230
Score = 49.2 bits (101), Expect(3) = 3e-073
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +1 / +3
Query: 553 RTKIDMSNYPTLARLHSEYMSHPAFEAALPGKQPDA 660
R +DMS +PTL R+ E P F+AALP +QPDA
Sbjct: 744 RFNVDMSKFPTLNRIDKELAELPEFQAALPARQPDA 851
Score = 45.5 bits (93), Expect(3) = 3e-073
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +1 / +3
Query: 463 LKGCAGKYATGDEVQLADVFLAPQIYAA 546
LK AGKY+ GD++ LAD+FL PQ++ A
Sbjct: 657 LKDVAGKYSVGDQLTLADIFLVPQVFGA 740
Score = 38.6 bits (78), Expect(3) = 5e-026
Identities = 20/36 (55%), Positives = 22/36 (61%)
Frame = -3 / -1
Query: 659 ASGCLPGSAASNAGCDMYSEWSLARVG*FDMSILVR 552
ASGCL G AA N+G S L +VG FDMS L R
Sbjct: 850 ASGCLAGRAAWNSGSSANSLSILFKVGNFDMSTLKR 743
Score = 29.0 bits (57), Expect(3) = 5e-026
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3 / -1
Query: 452 FSIAVKPLSICC*VHNTLSPAPTFWSMNLNTVRLWRG 342
FS AVKPLS+ H S AP+F S+ + RG
Sbjct: 652 FSKAVKPLSMNGLGHAKRSSAPSFSSIKFKITKF*RG 542
>gb|DR685091.1|DR685091 EST1075168 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAZ95 3' end, mRNA sequence
Length = 833
Score = 220 bits (475), Expect(3) = 3e-070
Identities = 90/145 (62%), Positives = 112/145 (77%)
Frame = +1 / +1
Query: 28 RLMLYSYWRSSCSHRARIALNLKGVDYEYKAVNLLKGEQSDPEFVKLNPMKFVPALVDGS 207
RL LYSYWRSSCS R RIALNLKG+ YEYKAVN+++GEQ E+ KLNP++FVP LVDG
Sbjct: 220 RLKLYSYWRSSCSWRVRIALNLKGLPYEYKAVNIVQGEQFSQEYTKLNPLQFVPTLVDGD 399
Query: 208 SVIGDSYAITLYLEDKYPEPPLLPQDLQKKALNHQIASIVASGIQPLHNLTVLRFIDQKV 387
++I DS AI LYLEDK+PE PLLP D KA++ Q ASI+ S IQPL NL +L I++K+
Sbjct: 400 TIISDSLAILLYLEDKFPEHPLLPDDHHLKAISLQAASIIGSNIQPLQNLVILNLIEEKL 579
Query: 388 GAGESVLWTQQQIERGFTAIENLIQ 462
GA E + W + IERGFTA+E L++
Sbjct: 580 GAEERLAWPKPFIERGFTALEKLLK 654
Score = 88.1 bits (186), Expect(3) = 4e-024
Identities = 44/75 (58%), Positives = 49/75 (65%)
Frame = -3 / -1
Query: 254 LSSKYSVIA*ESPITELPSTNAGTNFIGLSLTNSGSDCSPLRRFTALYS*STPLRLRAMR 75
LSSKY+ +A ES I PSTN GTN G +L S +CSP FTALYS P RLRA+
Sbjct: 446 LSSKYNNMASESEIIVSPSTNVGTN*RGFNLVYS*LNCSPCTIFTALYSYGNPFRLRAIL 267
Query: 74 ARWEHELRQYEYSIS 30
R EHELRQ EYS S
Sbjct: 266 TRQEHELRQ*EYSFS 222
Score = 45.5 bits (93), Expect(3) = 3e-070
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +1 / +1
Query: 463 LKGCAGKYATGDEVQLADVFLAPQIYAA 546
LK AGKY+ GD++ LAD+FL PQ++ A
Sbjct: 649 LKDVAGKYSVGDQLTLADIFLVPQVFGA 732
Score = 39.1 bits (79), Expect(3) = 3e-070
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1 / +1
Query: 553 RTKIDMSNYPTLARLHSEYMSHPAFEAALPGK 648
R +DMS +PTL R+ E P F+AALP +
Sbjct: 736 RFNVDMSKFPTLNRIDKELAELPEFQAALPAR 831
Score = 32.2 bits (64), Expect(3) = 4e-024
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = -3 / -1
Query: 650 CLPGSAASNAGCDMYSEWSLARVG*FDMSILVR 552
CL G AA N+G S L +VG FDMS L R
Sbjct: 833 CLAGRAAWNSGSSANSLSILFKVGNFDMSTLKR 735
Score = 29.0 bits (57), Expect(3) = 4e-024
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3 / -1
Query: 452 FSIAVKPLSICC*VHNTLSPAPTFWSMNLNTVRLWRG 342
FS AVKPLS+ H S AP+F S+ + RG
Sbjct: 644 FSKAVKPLSMNGLGHAKRSSAPSFSSIKFKITKF*RG 534
>gb|DR013060.1|DR013060 HEAT1_16_F02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_16_F02_A029 5', mRNA sequence
Length = 749
Score = 207 bits (447), Expect(2) = 1e-060
Identities = 86/151 (56%), Positives = 108/151 (71%)
Frame = +1 / +2
Query: 10 VEATVGRLMLYSYWRSSCSHRARIALNLKGVDYEYKAVNLLKGEQSDPEFVKLNPMKFVP 189
+ +T L LYS+WRSSC+ R RIALNLKG+ YEYKAVNL +GEQ EF KLNP+ FVP
Sbjct: 197 ISSTSASLKLYSFWRSSCAWRVRIALNLKGLPYEYKAVNLWQGEQFSEEFTKLNPIHFVP 376
Query: 190 ALVDGSSVIGDSYAITLYLEDKYPEPPLLPQDLQKKALNHQIASIVASGIQPLHNLTVLR 369
LVDG ++ DS AI LYLEDK+P PLLP DLQ KA++ Q A ++ S IQPL N+ VL
Sbjct: 377 TLVDGDIIVADSLAILLYLEDKFPGHPLLPHDLQSKAISLQAAVLIGSNIQPLQNMGVLS 556
Query: 370 FIDQKVGAGESVLWTQQQIERGFTAIENLIQ 462
I +K+G E W + IE+GFTA+E L++
Sbjct: 557 LIQEKLGPKEHQAWPKHFIEKGFTALEKLLK 649
Score = 84.0 bits (177), Expect(3) = 1e-021
Identities = 39/71 (54%), Positives = 46/71 (64%)
Frame = -3 / -3
Query: 254 LSSKYSVIA*ESPITELPSTNAGTNFIGLSLTNSGSDCSPLRRFTALYS*STPLRLRAMR 75
LSSKY+ +A ES PSTN GT +G +L NS +CSP +RFTALYS P R RA+
Sbjct: 441 LSSKYNNMASESATIISPSTNVGTK*MGFNLVNSSLNCSPCQRFTALYSYGNPFRFRAIL 262
Query: 74 ARWEHELRQYE 42
R HELRQ E
Sbjct: 261 TRQAHELRQKE 229
Score = 46.9 bits (96), Expect(2) = 1e-060
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1 / +2
Query: 463 LKGCAGKYATGDEVQLADVFLAPQIYAA 546
LK AGKY+ GD+V LAD+FL PQ+Y A
Sbjct: 644 LKDVAGKYSIGDKVTLADIFLVPQVYNA 727
Score = 31.8 bits (63), Expect(3) = 1e-021
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3 / -3
Query: 548 MAA*IWGARNTSASWTSSPVAYFPAHPFS 462
+A * G R SA+ T SP+ YFPA F+
Sbjct: 729 LAL*TCGTRKISANVTLSPIEYFPATSFN 643
Score = 25.4 bits (49), Expect(3) = 1e-021
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3 / -3
Query: 452 FSIAVKPLSICC*VHNTLSPAPTFWSMNLNT 360
FS AVKP S+ C H S P+F + L T
Sbjct: 639 FSKAVKPFSMKCLGHA*CSFGPSFS*IKLKT 547
>gb|DR099279.1|DR099279 STRR1_54_A05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_54_A05_A033 5', mRNA sequence
Length = 645
Score = 207 bits (447), Expect(2) = 1e-060
Identities = 86/151 (56%), Positives = 108/151 (71%)
Frame = +1 / +2
Query: 10 VEATVGRLMLYSYWRSSCSHRARIALNLKGVDYEYKAVNLLKGEQSDPEFVKLNPMKFVP 189
+ +T L LYS+WRSSC+ R RIALNLKG+ YEYKAVNL +GEQ EF KLNP+ FVP
Sbjct: 74 ISSTSASLKLYSFWRSSCAWRVRIALNLKGLPYEYKAVNLWQGEQFSEEFTKLNPIHFVP 253
Query: 190 ALVDGSSVIGDSYAITLYLEDKYPEPPLLPQDLQKKALNHQIASIVASGIQPLHNLTVLR 369
LVDG ++ DS AI LYLEDK+P PLLP DLQ KA++ Q A ++ S IQPL N+ VL
Sbjct: 254 TLVDGDIIVADSLAILLYLEDKFPGHPLLPHDLQSKAISLQAAVLIGSNIQPLQNMGVLS 433
Query: 370 FIDQKVGAGESVLWTQQQIERGFTAIENLIQ 462
I +K+G E W + IE+GFTA+E L++
Sbjct: 434 LIQEKLGPKEHQAWPKHFIEKGFTALEKLLK 526
Score = 84.0 bits (177), Expect(3) = 1e-021
Identities = 39/71 (54%), Positives = 46/71 (64%)
Frame = -3 / -1
Query: 254 LSSKYSVIA*ESPITELPSTNAGTNFIGLSLTNSGSDCSPLRRFTALYS*STPLRLRAMR 75
LSSKY+ +A ES PSTN GT +G +L NS +CSP +RFTALYS P R RA+
Sbjct: 318 LSSKYNNMASESATIISPSTNVGTK*MGFNLVNSSLNCSPCQRFTALYSYGNPFRFRAIL 139
Query: 74 ARWEHELRQYE 42
R HELRQ E
Sbjct: 138 TRQAHELRQKE 106
Score = 46.9 bits (96), Expect(2) = 1e-060
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1 / +2
Query: 463 LKGCAGKYATGDEVQLADVFLAPQIYAA 546
LK AGKY+ GD+V LAD+FL PQ+Y A
Sbjct: 521 LKDVAGKYSIGDKVTLADIFLVPQVYNA 604
Score = 31.8 bits (63), Expect(3) = 1e-021
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3 / -1
Query: 548 MAA*IWGARNTSASWTSSPVAYFPAHPFS 462
+A * G R SA+ T SP+ YFPA F+
Sbjct: 606 LAL*TCGTRKISANVTLSPIEYFPATSFN 520
Score = 25.4 bits (49), Expect(3) = 1e-021
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3 / -1
Query: 452 FSIAVKPLSICC*VHNTLSPAPTFWSMNLNT 360
FS AVKP S+ C H S P+F + L T
Sbjct: 516 FSKAVKPFSMKCLGHA*CSFGPSFS*IKLKT 424
>gb|AW289652.1|AW289652 NXNV003C03F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV003C03 5', mRNA sequence
Length = 519
Score = 157 bits (338), Expect(3) = 1e-047
Identities = 63/114 (55%), Positives = 85/114 (74%)
Frame = +1 / +2
Query: 121 VNLLKGEQSDPEFVKLNPMKFVPALVDGSSVIGDSYAITLYLEDKYPEPPLLPQDLQKKA 300
VN+++GEQ E+ KLNP++FVP LVDG +++ DS AI LYLEDK+PE PLLP D KA
Sbjct: 2 VNIVQGEQFSEEYTKLNPLQFVPTLVDGDTIVSDSLAILLYLEDKFPEHPLLPDDHHLKA 181
Query: 301 LNHQIASIVASGIQPLHNLTVLRFIDQKVGAGESVLWTQQQIERGFTAIENLIQ 462
++ Q ASI+ S IQPL NL +L I++K+GA E + W + IERGFTA+E L++
Sbjct: 182 ISLQAASIIGSNIQPLQNLVILNLIEEKLGAEERLAWPKPFIERGFTALEKLLK 343
Score = 45.5 bits (93), Expect(3) = 1e-047
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +1 / +2
Query: 463 LKGCAGKYATGDEVQLADVFLAPQIYAA 546
LK AGKY+ GD++ LAD+FL PQ++ A
Sbjct: 338 LKDVAGKYSVGDQLTLADIFLVPQVFGA 421
Score = 25.8 bits (50), Expect(3) = 1e-047
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1 / +2
Query: 553 RTKIDMSNYPTLARLHSEYMSHPAFEAAL 639
R +DMS +PTL R+ E AL
Sbjct: 425 RFNVDMSKFPTLNRIDKEXXXXXXXXXAL 511
>gb|CD028190.1|CD028190 NXNV003C03 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV003C03 5' similar to Arabidopsis thaliana sequence
At2g02380 putative glutathione S-transferase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 519
Score = 157 bits (338), Expect(3) = 1e-047
Identities = 63/114 (55%), Positives = 85/114 (74%)
Frame = +1 / +2
Query: 121 VNLLKGEQSDPEFVKLNPMKFVPALVDGSSVIGDSYAITLYLEDKYPEPPLLPQDLQKKA 300
VN+++GEQ E+ KLNP++FVP LVDG +++ DS AI LYLEDK+PE PLLP D KA
Sbjct: 2 VNIVQGEQFSEEYTKLNPLQFVPTLVDGDTIVSDSLAILLYLEDKFPEHPLLPDDHHLKA 181
Query: 301 LNHQIASIVASGIQPLHNLTVLRFIDQKVGAGESVLWTQQQIERGFTAIENLIQ 462
++ Q ASI+ S IQPL NL +L I++K+GA E + W + IERGFTA+E L++
Sbjct: 182 ISLQAASIIGSNIQPLQNLVILNLIEEKLGAEERLAWPKPFIERGFTALEKLLK 343
Score = 45.5 bits (93), Expect(3) = 1e-047
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +1 / +2
Query: 463 LKGCAGKYATGDEVQLADVFLAPQIYAA 546
LK AGKY+ GD++ LAD+FL PQ++ A
Sbjct: 338 LKDVAGKYSVGDQLTLADIFLVPQVFGA 421
Score = 25.8 bits (50), Expect(3) = 1e-047
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1 / +2
Query: 553 RTKIDMSNYPTLARLHSEYMSHPAFEAAL 639
R +DMS +PTL R+ E AL
Sbjct: 425 RFNVDMSKFPTLNRIDKEXXXXXXXXXAL 511
>gb|DR098980.1|DR098980 STRR1_49_H03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_49_H03_A033 3', mRNA sequence
Length = 812
Score = 131 bits (280), Expect(3) = 1e-046
Identities = 54/95 (56%), Positives = 70/95 (73%)
Frame = +1 / +3
Query: 178 KFVPALVDGSSVIGDSYAITLYLEDKYPEPPLLPQDLQKKALNHQIASIVASGIQPLHNL 357
+FVP LVDG ++I DS AI LYLEDK+PE PLLP D KA++ Q ASI+ S IQPL NL
Sbjct: 6 QFVPTLVDGDTIISDSLAILLYLEDKFPEHPLLPDDHHLKAISLQAASIIGSNIQPLQNL 185
Query: 358 TVLRFIDQKVGAGESVLWTQQQIERGFTAIENLIQ 462
+L I++K+GA E + W + IERGFTA+E L++
Sbjct: 186 VILNLIEEKLGAEERLAWPKPFIERGFTALEKLLK 290
Score = 49.2 bits (101), Expect(3) = 1e-046
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +1 / +3
Query: 553 RTKIDMSNYPTLARLHSEYMSHPAFEAALPGKQPDA 660
R +DMS +PTL R+ E P F+AALP +QPDA
Sbjct: 372 RFNVDMSKFPTLNRIDKELAELPEFQAALPARQPDA 479
Score = 45.5 bits (93), Expect(3) = 1e-046
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +1 / +3
Query: 463 LKGCAGKYATGDEVQLADVFLAPQIYAA 546
LK AGKY+ GD++ LAD+FL PQ++ A
Sbjct: 285 LKDVAGKYSVGDQLTLADIFLVPQVFGA 368
>gb|AA556901.1|AA556901 743 Loblolly pine C Pinus taeda cDNA clone 7C1A, mRNA sequence
Length = 678
Score = 175 bits (377), Expect = 4e-043
Identities = 73/125 (58%), Positives = 89/125 (71%)
Frame = +1 / +2
Query: 10 VEATVGRLMLYSYWRSSCSHRARIALNLKGVDYEYKAVNLLKGEQSDPEFVKLNPMKFVP 189
+ +T L LYS+WR SC+ R RIALNLKG+ YEYKAVNL +GEQ EF KLNP+ FVP
Sbjct: 152 ISSTSASLKLYSFWRXSCAWRXRIALNLKGLPYEYKAVNLWQGEQFSEEFTKLNPIHFVP 331
Query: 190 ALVDGSSVIGDSYAITLYLEDKYPEPPLLPQDLQKKALNHQIASIVASGIQPLHNLTVLR 369
LVDG ++ DS AI L LEDK+P PLLP DLQ KA++ Q A ++ S IQPL N+ VL
Sbjct: 332 TLVDGDIIVADSLAILLXLEDKFPGHPLLPHDLQSKAISLQAAVLIGSNIQPLQNMGVLN 511
Query: 370 FIDQK 384
I +K
Sbjct: 512 LIQEK 526
>gb|DR024662.1|DR024662 STRS1_66_C10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_C10_A034 5', mRNA sequence
Length = 340
Score = 153 bits (329), Expect = 1e-036
Identities = 61/86 (70%), Positives = 71/86 (82%)
Frame = +1 / +1
Query: 28 RLMLYSYWRSSCSHRARIALNLKGVDYEYKAVNLLKGEQSDPEFVKLNPMKFVPALVDGS 207
RL LYSYWRSSCS R RIALNLKG+ YEYKAVN+++GEQ E+ KLNP++FVP LVDG
Sbjct: 70 RLKLYSYWRSSCSWRVRIALNLKGLPYEYKAVNIVQGEQFSEEYTKLNPLQFVPTLVDGD 249
Query: 208 SVIGDSYAITLYLEDKYPEPPLLPQD 285
++I DS AI LYLEDK+PE PLLP D
Sbjct: 250 TIISDSLAILLYLEDKFPEHPLLPDD 327
>gb|CR393266.1|CR393266 CR393266 RN Pinus pinaster cDNA clone RN54F08, mRNA sequence
Length = 323
Score = 139 bits (298), Expect = 3e-032
Identities = 57/100 (57%), Positives = 72/100 (72%)
Frame = +1 / +2
Query: 142 QSDPEFVKLNPMKFVPALVDGSSVIGDSYAITLYLEDKYPEPPLLPQDLQKKALNHQIAS 321
Q EF KLNP++FVP LVDG +++ DS AI LYLEDK+PE PLLP D KA++ Q AS
Sbjct: 23 QFSEEFTKLNPLQFVPTLVDGDTIVSDSLAILLYLEDKFPEHPLLPDDHHLKAISLQAAS 202
Query: 322 IVASGIQPLHNLTVLRFIDQKVGAGESVLWTQQQIERGFT 441
I+ S IQPL NL +L I++K+GA E + W + IERGFT
Sbjct: 203 IIGSNIQPLQNLVILNLIEEKLGAEERLAWPKPFIERGFT 322
>gb|DR012976.1|DR012976 HEAT1_16_F02.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_16_F02_A029 3', mRNA sequence
Length = 750
Score = 78.0 bits (164), Expect(3) = 7e-030
Identities = 32/65 (49%), Positives = 44/65 (67%)
Frame = +1 / +2
Query: 268 PLLPQDLQKKALNHQIASIVASGIQPLHNLTVLRFIDQKVGAGESVLWTQQQIERGFTAI 447
PLLP DLQ KA++ Q A ++ S IQPL N+ VL I +K+G E W + IE+GFTA+
Sbjct: 8 PLLPHDLQSKAISLQAAVLIGSNIQPLQNMGVLSLIQEKLGPKEHQAWPKHFIEKGFTAL 187
Query: 448 ENLIQ 462
E L++
Sbjct: 188 EKLLK 202
Score = 46.9 bits (96), Expect(3) = 7e-030
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1 / +2
Query: 463 LKGCAGKYATGDEVQLADVFLAPQIYAA 546
LK AGKY+ GD+V LAD+FL PQ+Y A
Sbjct: 197 LKDVAGKYSIGDKVTLADIFLVPQVYNA 280
Score = 44.1 bits (90), Expect(3) = 7e-030
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1 / +2
Query: 562 IDMSNYPTLARLHSEYMSHPAFEAALPGKQPDA 660
+DMS +PTL R++ + P F+AA P +QPDA
Sbjct: 293 VDMSKFPTLNRIYQALVELPEFQAAAPERQPDA 391
>gb|AW289984.1|AW289984 NXNV009A09F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV009A09 5', mRNA sequence
Length = 512
Score = 65.7 bits (137), Expect(3) = 4e-026
Identities = 27/55 (49%), Positives = 38/55 (69%)
Frame = +1 / +3
Query: 298 ALNHQIASIVASGIQPLHNLTVLRFIDQKVGAGESVLWTQQQIERGFTAIENLIQ 462
A++ Q AS S IQPL NL +L I++K+GA E + W + IERGFTA+E L++
Sbjct: 3 AISLQAASXXGSNIQPLQNLVILNLIEEKLGAEERLAWPKPFIERGFTALEKLLK 167
Score = 49.2 bits (101), Expect(3) = 4e-026
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +1 / +3
Query: 553 RTKIDMSNYPTLARLHSEYMSHPAFEAALPGKQPDA 660
R +DMS +PTL R+ E P F+AALP +QPDA
Sbjct: 249 RFNVDMSKFPTLNRIDKELAELPEFQAALPARQPDA 356
Score = 41.4 bits (84), Expect(3) = 4e-026
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1 / +3
Query: 463 LKGCAGKYATGDEVQLADVFLAPQIYAA 546
LK AGKY+ GD++ LA +FL PQ++ A
Sbjct: 162 LKDVAGKYSVGDQLTLAYIFLVPQVFGA 245
>gb|CD026642.1|CD026642 NXNV009A09 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV009A09 5' similar to Arabidopsis thaliana sequence
At2g02390 glutathione S-transferase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 512
Score = 65.7 bits (137), Expect(3) = 4e-026
Identities = 27/55 (49%), Positives = 38/55 (69%)
Frame = +1 / +3
Query: 298 ALNHQIASIVASGIQPLHNLTVLRFIDQKVGAGESVLWTQQQIERGFTAIENLIQ 462
A++ Q AS S IQPL NL +L I++K+GA E + W + IERGFTA+E L++
Sbjct: 3 AISLQAASXXGSNIQPLQNLVILNLIEEKLGAEERLAWPKPFIERGFTALEKLLK 167
Score = 49.2 bits (101), Expect(3) = 4e-026
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +1 / +3
Query: 553 RTKIDMSNYPTLARLHSEYMSHPAFEAALPGKQPDA 660
R +DMS +PTL R+ E P F+AALP +QPDA
Sbjct: 249 RFNVDMSKFPTLNRIDKELAELPEFQAALPARQPDA 356
Score = 41.4 bits (84), Expect(3) = 4e-026
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1 / +3
Query: 463 LKGCAGKYATGDEVQLADVFLAPQIYAA 546
LK AGKY+ GD++ LA +FL PQ++ A
Sbjct: 162 LKDVAGKYSVGDQLTLAYIFLVPQVFGA 245
>gb|DR024602.1|DR024602 STRS1_66_C10.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_C10_A034 3', mRNA sequence
Length = 689
Score = 59.3 bits (123), Expect(3) = 3e-025
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = +1 / +3
Query: 331 SGIQPLHNLTVLRFIDQKVGAGESVLWTQQQIERGFTAIENLIQ 462
S IQPL NL +L I++K+GA E + W + IERGFTA+E L++
Sbjct: 6 SNIQPLQNLVILNLIEEKLGAEERLAWPKPFIERGFTALEKLLK 137
Score = 48.3 bits (99), Expect(3) = 3e-025
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +1 / +3
Query: 553 RTKIDMSNYPTLARLHSEYMSHPAFEAALPGKQPDA 660
R +DMS +PTL R+ E P F+AALP +QPDA
Sbjct: 219 RFNVDMSKFPTLNRIDKELAELPEFQAALPERQPDA 326
Score = 45.5 bits (93), Expect(3) = 3e-025
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +1 / +3
Query: 463 LKGCAGKYATGDEVQLADVFLAPQIYAA 546
LK AGKY+ GD++ LAD+FL PQ++ A
Sbjct: 132 LKDVAGKYSVGDQLTLADIFLVPQVFGA 215
>gb|CR392991.1|CR392991 CR392991 RN Pinus pinaster cDNA clone RN51B05, mRNA sequence
Length = 234
Score = 112 bits (240), Expect = 3e-024
Identities = 45/64 (70%), Positives = 52/64 (81%)
Frame = +1 / +2
Query: 19 TVGRLMLYSYWRSSCSHRARIALNLKGVDYEYKAVNLLKGEQSDPEFVKLNPMKFVPALV 198
T RL LYSYWRSSCS R RIALNLKG+ YEYKAVN+++GEQ EF KLNP++FVP LV
Sbjct: 41 TSSRLKLYSYWRSSCSWRVRIALNLKGLPYEYKAVNIVQGEQFSEEFTKLNPLQFVPTLV 220
Query: 199 DGSS 210
DG +
Sbjct: 221 DGDT 232
>gb|DR099215.1|DR099215 STRR1_54_A05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_54_A05_A033 3', mRNA sequence
Length = 690
Score = 51.9 bits (107), Expect(3) = 8e-022
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +1 / +1
Query: 331 SGIQPLHNLTVLRFIDQKVGAGESVLWTQQQIERGFTAIENLIQ 462
S IQPL N+ VL I +K+G E W + IE+GFTA+E L++
Sbjct: 4 SNIQPLQNMGVLSLIQEKLGPKEHQAWPKHFIEKGFTALEKLLK 135
Score = 46.9 bits (96), Expect(3) = 8e-022
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1 / +1
Query: 463 LKGCAGKYATGDEVQLADVFLAPQIYAA 546
LK AGKY+ GD+V LAD+FL PQ+Y A
Sbjct: 130 LKDVAGKYSIGDKVTLADIFLVPQVYNA 213
Score = 42.8 bits (87), Expect(3) = 8e-022
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1 / +1
Query: 562 IDMSNYPTLARLHSEYMSHPAFEAALPGKQPDA 660
+DMS +PTL R+ + P F+AA P +QPDA
Sbjct: 226 VDMSKFPTLNRIDQALVELPEFQAAAPERQPDA 324
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 489,110,277
Number of Sequences: 355925
Number of extensions: 6995360
Number of successful extensions: 48658
Number of sequences better than 1.0e-020: 21
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 13390430000
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)