TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829479.2.1
(1245 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF023615.1|AF023615 Pinus radiata MADS box protein mRNA,... 201 4e-052
gb|AF006210.1|AF006210 Pinus resinosa MADS box transcriptio... 201 5e-052
gb|CX713803.1|CX713803 RTPQ1_13_F12.b1_A032 Roots treated w... 144 7e-044
gb|CO161575.1|CO161575 FLD1_29_F09.g1_A029 Root flooded Pin... 144 1e-042
gb|CO161503.1|CO161503 FLD1_29_F09.b1_A029 Root flooded Pin... 144 1e-042
gb|CF389963.1|CF389963 RTDR2_11_B08.g1_A021 Loblolly pine r... 144 1e-042
gb|CF389852.1|CF389852 RTDR2_11_B08.b1_A021 Loblolly pine r... 144 8e-042
gb|CF388137.1|CF388137 RTDR2_1_D05.b1_A021 Loblolly pine ro... 144 3e-041
gb|BX252374.1|BX252374 BX252374 Pinus pinaster differenciat... 128 2e-038
gb|U90347.1|PRU90347 Pinus radiata putative MADS box transc... 118 4e-038
gb|CF388230.1|CF388230 RTDR2_1_D05.g1_A021 Loblolly pine ro... 108 5e-037
gb|DR167777.1|DR167777 RTPHOS1_21_A12.b1_A029 Roots minus p... 153 2e-036
gb|DR178023.1|DR178023 RTMNUT1_8_F12.g1_A029 Roots minus mi... 126 4e-035
gb|DR072089.1|DR072089 RTDK1_24_B10.b1_A029 Roots, dark Pin... 126 4e-035
gb|AW587800.1|AW587800 ST67B08 Pine TriplEx shoot tip libra... 148 1e-034
gb|CO367965.1|CO367965 RTK1_37_F12.g1_A029 Roots minus pota... 126 1e-034
gb|BQ696809.1|BQ696809 NXPV_045_E02_F NXPV (Nsf Xylem Plani... 147 2e-034
gb|CO163263.1|CO163263 FLD1_40_B04.g1_A029 Root flooded Pin... 147 2e-034
gb|CO364965.1|CO364965 RTK1_22_G09.g1_A029 Roots minus pota... 147 2e-034
gb|CX713480.1|CX713480 RTPQ1_9_E04.g1_A032 Roots treated wi... 147 2e-034
gb|CX713558.1|CX713558 RTPQ1_10_E02.g1_A032 Roots treated w... 147 2e-034
gb|DR090702.1|DR090702 RTAL1_16_G11.g1_A029 Roots plus adde... 147 2e-034
gb|CO157702.1|CO157702 FLD1_1_B06.g1_A029 Root flooded Pinu... 126 2e-034
gb|AW010398.1|AW010398 ST06D02 Pine TriplEx shoot tip libra... 144 1e-033
gb|BQ290846.1|BQ290846 NXRV050_D03_F NXRV (Nsf Xylem Root w... 144 1e-033
gb|DR013883.1|DR013883 HEAT1_22_D05.b1_A029 Root at 37 C fo... 144 1e-033
gb|U76726.1|PRU76726 Pinus radiata MADS-box protein (PrMADS... 144 1e-033
gb|BG318835.1|BG318835 NXPV_020_D12_F NXPV (Nsf Xylem Plani... 143 2e-033
gb|DR060889.1|DR060889 RTNIT1_30_D12.g1_A029 Roots minus ni... 143 3e-033
gb|DR079072.1|DR079072 RTFEPL1_8_G11.g1_A029 Roots plus add... 140 2e-032
gb|U90344.1|PRU90344 Pinus radiata putative MADS box transc... 140 2e-032
gb|CF475501.1|CF475501 RTWW2_12_G12.g1_A021 Well-watered lo... 138 6e-032
gb|BG318417.1|BG318417 NXPV_013_D07_F NXPV (Nsf Xylem Plani... 138 8e-032
gb|DR384822.1|DR384822 RTHG1_4_G03.g1_A029 Roots plus added... 138 8e-032
gb|CO169756.1|CO169756 NDL1_9_A05.g1_A029 Needles control P... 137 1e-031
gb|DR168055.1|DR168055 RTPHOS1_22_H02.g1_A029 Roots minus p... 137 1e-031
gb|U90348.1|PRU90348 Pinus radiata putative MADS box transc... 136 3e-031
gb|AW290406.1|AW290406 NXNV019H03F Nsf Xylem Normal wood Ve... 134 1e-030
gb|BG625803.1|BG625803 NXPV_066_C06_F NXPV (Nsf Xylem Plani... 134 1e-030
gb|CD027064.1|CD027064 NXNV019H03 Nsf Xylem Normal wood Ver... 134 1e-030
gb|BQ654531.1|BQ654531 NXRV081_H04_F NXRV (Nsf Xylem Root w... 134 1e-030
gb|AA556486.1|AA556486 341 Loblolly pine C Pinus taeda cDNA... 131 9e-030
gb|DR058437.1|DR058437 RTNIT1_11_F11.g1_A029 Roots minus ni... 114 3e-029
gb|CF394057.1|CF394057 RTDS2_3_D04.b1_A021 Drought-stressed... 114 3e-029
gb|DR081124.1|DR081124 RTFEPL1_27_C11.g1_A029 Roots plus ad... 129 4e-029
gb|U90346.1|PRU90346 Pinus radiata putative MADS box transc... 127 1e-028
gb|U42400.1|PRU42400 Pinus radiata putative MADS-box family... 127 1e-028
gb|AW754659.1|AW754659 PC04G10 Pine TriplEx pollen cone lib... 127 2e-028
gb|CX645838.1|CX645838 COLD1_5_D01.g1_A029 Root cold Pinus ... 127 2e-028
gb|DR177222.1|DR177222 RTMNUT1_3_H10.g1_A029 Roots minus mi... 127 2e-028
emb|Y09611.1|PRMADS1 P.resinosa mRNA for MADS-box protein 127 2e-028
gb|AL749789.1|AL749789 AL749789 AS Pinus pinaster cDNA clon... 126 3e-028
gb|DR072321.1|DR072321 RTDK1_25_B07.g1_A029 Roots, dark Pin... 126 3e-028
gb|AW010611.1|AW010611 ST08G08 Pine TriplEx shoot tip libra... 124 1e-027
gb|CF476348.1|CF476348 RTWW2_22_G12.g1_A021 Well-watered lo... 124 1e-027
gb|CO175129.1|CO175129 NDL1_48_D06.g1_A029 Needles control ... 123 2e-027
gb|CV033324.1|CV033324 RTNACL1_33_G03.g1_A029 Roots plus ad... 122 5e-027
gb|CO363306.1|CO363306 RTK1_8_H10.g1_A029 Roots minus potas... 122 7e-027
gb|DR090622.1|DR090622 RTAL1_16_G11.b1_A029 Roots plus adde... 121 1e-026
gb|CO197079.1|CO197079 GEO1_3_F06.g1_A029 Root gravitropism... 120 2e-026
gb|CO200411.1|CO200411 GEO2_7_G03.b1_A032 Root gravitropism... 114 2e-026
gb|CO200495.1|CO200495 GEO2_7_G03.g1_A032 Root gravitropism... 114 2e-026
dbj|DD014347.1| Compositions and Methods for the Modificati... 120 3e-026
gb|CX650850.1|CX650850 COLD1_48_B09.g1_A029 Root cold Pinus... 119 3e-026
gb|U90345.1|PRU90345 Pinus radiata putative MADS box transc... 119 5e-026
gb|CO170901.1|CO170901 NDL1_17_E10.g1_A029 Needles control ... 118 9e-026
gb|DR012819.1|DR012819 HEAT1_15_E08.b1_A029 Root at 37 C fo... 118 9e-026
gb|CF399403.1|CF399403 RTDS3_28_D02.g1_A022 Drought-stresse... 117 1e-025
gb|CF392697.1|CF392697 RTDR3_5_H09.g1_A022 Loblolly pine ro... 117 2e-025
gb|CF477439.1|CF477439 RTWW3_7_F06.g1_A022 Well-watered lob... 117 2e-025
gb|AW981881.1|AW981881 PC19G08 Pine TriplEx pollen cone lib... 116 2e-025
gb|BE187247.1|BE187247 NXNV_76_C05_F Nsf Xylem Normal wood ... 116 2e-025
gb|CF665739.1|CF665739 RTCNT1_18_D05.b1_A029 Root control P... 116 2e-025
gb|U42399.1|PRU42399 Pinus radiata putative MADS-box family... 116 2e-025
gb|DR112977.1|DR112977 RTS1_32_C04.b1_A029 Roots minus sulf... 116 3e-025
gb|CO365540.1|CO365540 RTK1_17_D10.g1_A029 Roots minus pota... 116 4e-025
gb|DR069454.1|DR069454 RTDK1_7_H04.b1_A029 Roots, dark Pinu... 116 4e-025
gb|DR167232.1|DR167232 RTPHOS1_17_B11.g1_A029 Roots minus p... 116 4e-025
gb|BI643995.1|BI643995 NXPV_133_H06_F NXPV (Nsf Xylem Plani... 115 6e-025
gb|CF668263.1|CF668263 RTCNT1_35_A03.g1_A029 Root control P... 114 1e-024
gb|CO201105.1|CO201105 RTCNT2_3_D12.g1_A029 Root control 2 ... 114 1e-024
gb|CO364847.1|CO364847 RTK1_22_D10.b1_A029 Roots minus pota... 114 1e-024
gb|CV031753.1|CV031753 RTNACL1_3_B05.g1_A029 Roots plus add... 114 1e-024
gb|DR178004.1|DR178004 RTMNUT1_8_E05.g1_A029 Roots minus mi... 114 1e-024
gb|CX645252.1|CX645252 COLD1_1_H11.b1_A029 Root cold Pinus ... 113 3e-024
gb|DR051726.1|DR051726 RTBOR1_32_A11.b1_A029 Roots plus add... 113 3e-024
gb|DR051801.1|DR051801 RTBOR1_32_A11.g1_A029 Roots plus add... 113 3e-024
gb|DR109660.1|DR109660 RTS1_3_G12.g1_A029 Roots minus sulfu... 113 3e-024
gb|BE451798.1|BE451798 NXCI_002_D03_F NXCI (Nsf Xylem Compr... 112 4e-024
gb|BF517018.1|BF517018 NXSI_008_C03_F NXSI (Nsf Xylem Side ... 112 4e-024
gb|U90349.1|PRU90349 Pinus radiata putative MADS box transc... 112 4e-024
gb|CF401468.1|CF401468 RTWW1_12_E09.g1_A015 Well-watered lo... 110 2e-023
gb|CF476374.1|CF476374 RTWW2_22_E12.g1_A021 Well-watered lo... 109 4e-023
gb|CF670172.1|CF670172 RTCNT1_48_B11.g1_A029 Root control P... 109 4e-023
gb|CX650456.1|CX650456 COLD1_45_F12.g1_A029 Root cold Pinus... 109 4e-023
gb|BF220652.1|BF220652 NXCI_151_A10_F NXCI (Nsf Xylem Compr... 107 1e-022
gb|BG318888.1|BG318888 NXPV_021_A10_F NXPV (Nsf Xylem Plani... 106 3e-022
gb|AI725123.1|AI725123 1022 PtIFG2 Pinus taeda cDNA clone 8... 105 5e-022
gb|BF186169.1|BF186169 NXCI_133_G11_F NXCI (Nsf Xylem Compr... 105 5e-022
gb|BF609658.1|BF609658 NXSI_047_G05_F NXSI (Nsf Xylem Side ... 105 5e-022
gb|BF778113.1|BF778113 NXSI_077_C08_F NXSI (Nsf Xylem Side ... 105 5e-022
gb|CX715901.1|CX715901 RTPQ1_37_G08.g1_A032 Roots treated w... 105 5e-022
gb|DR069761.1|DR069761 RTDK1_9_F10.b1_A029 Roots, dark Pinu... 105 5e-022
gb|DR098149.1|DR098149 STRR1_39_A06.g1_A033 Stem Response R... 105 5e-022
gb|DR101425.1|DR101425 STRR1_73_B10.b1_A033 Stem Response R... 105 5e-022
gb|DR742217.1|DR742217 RTCU1_2_C05.g1_A029 Roots plus added... 105 5e-022
gb|CF671036.1|CF671036 RTCNT1_54_F06.b1_A029 Root control P... 105 6e-022
gb|CX650315.1|CX650315 COLD1_44_H01.g1_A029 Root cold Pinus... 105 6e-022
gb|DR112834.1|DR112834 RTS1_31_A11.b1_A029 Roots minus sulf... 105 7e-022
gb|AA739846.1|AA739846 611 PtIFG2 Pinus taeda cDNA clone 89... 105 7e-022
gb|BF777427.1|BF777427 NXSI_071_E03_F NXSI (Nsf Xylem Side ... 105 7e-022
gb|BG039483.1|BG039483 NXSI_099_F04_F NXSI (Nsf Xylem Side ... 105 7e-022
gb|BM134188.1|BM134188 NXLV_017_H01_F NXLV (Nsf Xylem Late ... 105 7e-022
gb|CD028456.1|CD028456 NXSI_119_C03_F NXSI (Nsf Xylem Side ... 105 7e-022
gb|CF389480.1|CF389480 RTDR2_7_A07.g1_A021 Loblolly pine ro... 105 7e-022
gb|CF390951.1|CF390951 RTDR3_2_E09.g1_A022 Loblolly pine ro... 105 7e-022
gb|CF671146.1|CF671146 RTCNT1_55_C04.b1_A029 Root control P... 105 7e-022
gb|CV034382.1|CV034382 RTNACL1_40_C07.g1_A029 Roots plus ad... 105 7e-022
gb|DR742675.1|DR742675 RTCU1_5_F06.g2_A029 Roots plus added... 105 7e-022
gb|AW226013.1|AW226013 ST76C10 Pine TriplEx shoot tip libra... 105 9e-022
gb|BQ695742.1|BQ695742 NXPV_032_B10_F NXPV (Nsf Xylem Plani... 105 9e-022
gb|CX649779.1|CX649779 COLD1_41_A09.g1_A029 Root cold Pinus... 104 1e-021
gb|CO361066.1|CO361066 NDL2_2_B04.g1_A029 Needles control 2... 104 2e-021
gb|DR169156.1|DR169156 RTPHOS1_30_A07.g1_A029 Roots minus p... 104 2e-021
gb|BF220432.1|BF220432 NXCI_146_C04_F NXCI (Nsf Xylem Compr... 103 2e-021
gb|BQ702011.1|BQ702011 NXSI_123_D02_F NXSI (Nsf Xylem Side ... 103 3e-021
gb|CF386447.1|CF386447 RTDR1_14_B10.g1_A015 Loblolly pine r... 103 3e-021
gb|DR014329.1|DR014329 HEAT1_24_G07.g1_A029 Root at 37 C fo... 103 3e-021
gb|AF120097.1|AF120097 Pinus radiata DEF/GLO-like protein (... 103 3e-021
gb|CV033251.1|CV033251 RTNACL1_33_G03.b1_A029 Roots plus ad... 102 4e-021
gb|CV034312.1|CV034312 RTNACL1_40_C07.b1_A029 Roots plus ad... 102 4e-021
gb|DR049854.1|DR049854 RTBOR1_19_B11.g1_A029 Roots plus add... 102 4e-021
gb|DR091107.1|DR091107 RTAL1_19_A05.g1_A029 Roots plus adde... 102 4e-021
gb|AW225878.1|AW225878 ST72G07 Pine TriplEx shoot tip libra... 102 6e-021
gb|DR016118.1|DR016118 STRS1_7_G02.g1_A034 Shoot tip pitch ... 102 6e-021
>gb|AF023615.1|AF023615 Pinus radiata MADS box protein mRNA, complete cds
Length = 922
Score = 201 bits (433), Expect(2) = 4e-052
Identities = 85/110 (77%), Positives = 97/110 (88%)
Frame = -2 / +2
Query: 1007 QGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 828
Q GRGKIEIKRIENTT+RQVTFCKRRNGLLKKAYELSVLCDAEVAL+VFSSRGRLYE+A
Sbjct: 8 QIMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEFA 187
Query: 827 NNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNAN 678
N+SVK TIERYKK D+++ G ++E N+QY+QQE+ KLRQ I LQNAN
Sbjct: 188 NHSVKRTIERYKKTCVDNNHGGAISESNSQYWQQEAGKLRQQIDILQNAN 337
Score = 99.1 bits (210), Expect(3) = 4e-028
Identities = 50/99 (50%), Positives = 56/99 (56%)
Frame = +1 / -2
Query: 676 VFAFCKLWIICRSLEDSCW*YWALTSATVPELEESLLAFLYLSMVDFTLLLAYS*RRPRL 855
+FAFCK+ I C SL SC Y L S P S FLYLS+V FTL LA S* P L
Sbjct: 339 LFAFCKMSICCLSLPASCCQY*ELDSDIAPPWLLSTQVFLYLSIVLFTLWLANS*SLPLL 160
Query: 856 EKXXXXXXXXXXXXXXYAFLSRPLRRLQKVTCRLVVFSM 972
EK YAF ++P RRLQKVTCR VVFS+
Sbjct: 159 EKTMRATSASQRTDNSYAFFNKPFRRLQKVTCRFVVFSI 43
Score = 41.8 bits (85), Expect(3) = 4e-028
Identities = 24/52 (46%), Positives = 29/52 (55%)
Frame = +1 / -2
Query: 481 SAILLLRYMLSVCRSISLFCI*STSAYSSSFFLALILIMAFSSLPSICLRSL 636
SAILL R S SL C+ S S+ + SFFL ++ FSS S CL SL
Sbjct: 531 SAILLRRISFSWISMCSLLCMMSISSSNISFFLDRTRLIPFSSRTSSCLSSL 376
Score = 28.6 bits (56), Expect(2) = 4e-052
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2 / +2
Query: 422 EYDHMAPFDSRNFLQVSM 369
EYD + FDSRNFL ++
Sbjct: 572 EYDALPAFDSRNFLHANL 625
Score = 22.6 bits (43), Expect(3) = 4e-028
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1 / -2
Query: 379 CRKFLESKGAMWSYS 423
CRKF ES SYS
Sbjct: 615 CRKFRESNAGSASYS 571
>gb|AF006210.1|AF006210 Pinus resinosa MADS box transcription factor mRNA, complete cds
Length = 1726
Score = 201 bits (434), Expect(2) = 5e-052
Identities = 85/110 (77%), Positives = 97/110 (88%)
Frame = -2 / +1
Query: 1007 QGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 828
Q GRGKIEIKRIENTT+RQVTFCKRRNGLLKKAYELSVLCDAEVAL+VFSSRGRLYE+A
Sbjct: 469 QIMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEFA 648
Query: 827 NNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNAN 678
N+SVK TIERYKK D+++ G ++E N+QY+QQE+ KLRQ I LQNAN
Sbjct: 649 NHSVKRTIERYKKTCVDNNHGGAISESNSQYWQQEAGKLRQQIEILQNAN 798
Score = 99.6 bits (211), Expect(3) = 4e-028
Identities = 50/99 (50%), Positives = 56/99 (56%)
Frame = +1 / -3
Query: 676 VFAFCKLWIICRSLEDSCW*YWALTSATVPELEESLLAFLYLSMVDFTLLLAYS*RRPRL 855
+FAFCK+ I C SL SC Y L S P S FLYLS+V FTL LA S* P L
Sbjct: 800 LFAFCKISICCLSLPASCCQY*ELDSEIAPPWLLSTQVFLYLSIVLFTLWLANS*SLPLL 621
Query: 856 EKXXXXXXXXXXXXXXYAFLSRPLRRLQKVTCRLVVFSM 972
EK YAF ++P RRLQKVTCR VVFS+
Sbjct: 620 EKTMRATSASQRTDNSYAFFNKPFRRLQKVTCRFVVFSI 504
Score = 41.8 bits (85), Expect(3) = 4e-028
Identities = 24/52 (46%), Positives = 29/52 (55%)
Frame = +1 / -3
Query: 481 SAILLLRYMLSVCRSISLFCI*STSAYSSSFFLALILIMAFSSLPSICLRSL 636
SAILL R S SL C+ S S+ + SFFL ++ FSS S CL SL
Sbjct: 992 SAILLRRISFSWISMCSLLCMMSISSSNISFFLDRTRLIPFSSRTSSCLSSL 837
Score = 28.6 bits (56), Expect(2) = 5e-052
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2 / +1
Query: 422 EYDHMAPFDSRNFLQVSM 369
EYD + FDSRNFL ++
Sbjct: 1033 EYDALPAFDSRNFLHANL 1086
Score = 22.1 bits (42), Expect(3) = 4e-028
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1 / -3
Query: 379 CRKFLESKGAMWSYS 423
CRKF ES SYS
Sbjct: 1076 CRKFRESNAGNASYS 1032
>gb|CX713803.1|CX713803 RTPQ1_13_F12.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_13_F12_A032 3', mRNA sequence
Length = 586
Score = 144 bits (309), Expect(2) = 7e-044
Identities = 60/74 (81%), Positives = 67/74 (90%)
Frame = -2 / -3
Query: 1010 RQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEY 831
R GRGKIEIKRIENTT+RQVTF KRRNGLLKKAYELSVLCDAEVA+++FS+RG+LYE+
Sbjct: 491 RTRMGRGKIEIKRIENTTNRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSNRGKLYEF 312
Query: 830 ANNSVKSTIERYKK 789
AN SV TIERYKK
Sbjct: 311 ANKSVNRTIERYKK 270
Score = 54.2 bits (112), Expect(2) = 7e-044
Identities = 18/56 (32%), Positives = 40/56 (71%)
Frame = -2 / -3
Query: 674 RNIVGDSIHTMGLRDLKQMEGKLEKAIIKIRARKNELLYAEVDYMQKREMDLQTDN 507
RN++GD++ + L++L +E ++++ I +R+RK+E+L+ E++ +++RE L N
Sbjct: 176 RNLMGDNLSALSLKELDLLEARIQRGIQSVRSRKDEILHQELEALREREQILLVQN 9
>gb|CO161575.1|CO161575 FLD1_29_F09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_29_F09_A029 5', mRNA sequence
Length = 909
Score = 144 bits (309), Expect(2) = 1e-042
Identities = 60/74 (81%), Positives = 67/74 (90%)
Frame = -2 / +1
Query: 1010 RQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEY 831
R GRGKIEIKRIENTT+RQVTF KRRNGLLKKAYELSVLCDAEVA+++FS+RG+LYE+
Sbjct: 181 RTRMGRGKIEIKRIENTTNRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSNRGKLYEF 360
Query: 830 ANNSVKSTIERYKK 789
AN SV TIERYKK
Sbjct: 361 ANKSVNRTIERYKK 402
Score = 50.1 bits (103), Expect(2) = 1e-042
Identities = 15/56 (26%), Positives = 38/56 (67%)
Frame = -2 / +1
Query: 674 RNIVGDSIHTMGLRDLKQMEGKLEKAIIKIRARKNELLYAEVDYMQKREMDLQTDN 507
RN++GD++ + L++L +E ++++ I +R+RK ++L + D+++ + + Q +N
Sbjct: 496 RNLMGDNLSALSLKELDLLEARIQRGIQSVRSRKEQILLVQNDFLRNKIAECQCEN 663
>gb|CO161503.1|CO161503 FLD1_29_F09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_29_F09_A029 3', mRNA sequence
Length = 896
Score = 144 bits (309), Expect(2) = 1e-042
Identities = 60/74 (81%), Positives = 67/74 (90%)
Frame = -2 / +1
Query: 1010 RQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEY 831
R GRGKIEIKRIENTT+RQVTF KRRNGLLKKAYELSVLCDAEVA+++FS+RG+LYE+
Sbjct: 178 RTRMGRGKIEIKRIENTTNRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSNRGKLYEF 357
Query: 830 ANNSVKSTIERYKK 789
AN SV TIERYKK
Sbjct: 358 ANKSVNRTIERYKK 399
Score = 50.1 bits (103), Expect(2) = 1e-042
Identities = 15/56 (26%), Positives = 38/56 (67%)
Frame = -2 / +1
Query: 674 RNIVGDSIHTMGLRDLKQMEGKLEKAIIKIRARKNELLYAEVDYMQKREMDLQTDN 507
RN++GD++ + L++L +E ++++ I +R+RK ++L + D+++ + + Q +N
Sbjct: 493 RNLMGDNLSALSLKELDLLEARIQRGIQSVRSRKEQILLVQNDFLRNKIAECQCEN 660
>gb|CF389963.1|CF389963 RTDR2_11_B08.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_11_B08_A021 5', mRNA
sequence
Length = 791
Score = 144 bits (309), Expect(2) = 1e-042
Identities = 60/74 (81%), Positives = 67/74 (90%)
Frame = -2 / -1
Query: 1010 RQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEY 831
R GRGKIEIKRIENTT+RQVTF KRRNGLLKKAYELSVLCDAEVA+++FS+RG+LYE+
Sbjct: 788 RTRMGRGKIEIKRIENTTNRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSNRGKLYEF 609
Query: 830 ANNSVKSTIERYKK 789
AN SV TIERYKK
Sbjct: 608 ANKSVNRTIERYKK 567
Score = 50.1 bits (103), Expect(2) = 1e-042
Identities = 15/56 (26%), Positives = 38/56 (67%)
Frame = -2 / -1
Query: 674 RNIVGDSIHTMGLRDLKQMEGKLEKAIIKIRARKNELLYAEVDYMQKREMDLQTDN 507
RN++GD++ + L++L +E ++++ I +R+RK ++L + D+++ + + Q +N
Sbjct: 473 RNLMGDNLSALSLKELDLLEARIQRGIQSVRSRKEQILLVQNDFLRNKIAECQCEN 306
>gb|CF389852.1|CF389852 RTDR2_11_B08.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_11_B08_A021 3', mRNA
sequence
Length = 685
Score = 144 bits (309), Expect(2) = 8e-042
Identities = 60/74 (81%), Positives = 67/74 (90%)
Frame = -2 / -1
Query: 1010 RQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEY 831
R GRGKIEIKRIENTT+RQVTF KRRNGLLKKAYELSVLCDAEVA+++FS+RG+LYE+
Sbjct: 505 RTRMGRGKIEIKRIENTTNRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSNRGKLYEF 326
Query: 830 ANNSVKSTIERYKK 789
AN SV TIERYKK
Sbjct: 325 ANKSVNRTIERYKK 284
Score = 47.3 bits (97), Expect(2) = 8e-042
Identities = 14/55 (25%), Positives = 37/55 (67%)
Frame = -2 / -1
Query: 674 RNIVGDSIHTMGLRDLKQMEGKLEKAIIKIRARKNELLYAEVDYMQKREMDLQTD 510
RN++GD++ + L++L +E ++++ I +R+RK ++L + D+++ + + Q +
Sbjct: 190 RNLMGDNLSALSLKELDLLEARIQRGIQSVRSRKEQILLVQNDFLRNKIAECQCE 26
>gb|CF388137.1|CF388137 RTDR2_1_D05.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_1_D05_A021 3', mRNA sequence
Length = 532
Score = 144 bits (309), Expect(2) = 3e-041
Identities = 60/74 (81%), Positives = 67/74 (90%)
Frame = -2 / -1
Query: 1010 RQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEY 831
R GRGKIEIKRIENTT+RQVTF KRRNGLLKKAYELSVLCDAEVA+++FS+RG+LYE+
Sbjct: 442 RTRMGRGKIEIKRIENTTNRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSNRGKLYEF 263
Query: 830 ANNSVKSTIERYKK 789
AN SV TIERYKK
Sbjct: 262 ANKSVNRTIERYKK 221
Score = 45.5 bits (93), Expect(2) = 3e-041
Identities = 14/42 (33%), Positives = 32/42 (76%)
Frame = -2 / -1
Query: 674 RNIVGDSIHTMGLRDLKQMEGKLEKAIIKIRARKNELLYAEV 549
RN++GD++ + L++L +E ++++ I +R+RK+E+L+ E+
Sbjct: 127 RNLMGDNLSALSLKELDLLEARIQRGIQSVRSRKDEILHQEL 2
>gb|BX252374.1|BX252374 BX252374 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP063E09 similar to AGAMOUS LIKE MADS BOX
PROTEIN, mRNA sequence
Length = 674
Score = 128 bits (274), Expect(2) = 2e-038
Identities = 54/103 (52%), Positives = 76/103 (73%)
Frame = -2 / +3
Query: 995 RGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSV 816
RGK ++K+IEN TSRQVTF KRRNGLLKKAYELSVLCDAEV L+VFS RG+LYE+++ +
Sbjct: 144 RGKTQMKKIENVTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFSSRCM 323
Query: 815 KSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQ 687
+ +ERY+K + + + T E + Q ++E + ++ I L+
Sbjct: 324 QKMLERYQKYSEEFDINNTTKEHDIQDIKRELADKKEKISILE 452
Score = 51.9 bits (107), Expect(2) = 2e-038
Identities = 18/74 (24%), Positives = 44/74 (59%)
Frame = -2 / +3
Query: 695 SLQNANTRNIVGDSIHTMGLRDLKQMEGKLEKAIIKIRARKNELLYAEVDYMQKREMDLQ 516
S+ R ++G+ + + +++L Q+E + ++ + IRAR ++L E+D ++ +E +
Sbjct: 441 SILELTQRKMLGEDLESCSMKELNQLESQADRGLKHIRARLTKMLVDEIDQLKWKERIVT 620
Query: 515 TDNMYLRSKIAESN 474
+N++LR K + +
Sbjct: 621 EENLFLRKKCGDEH 662
>gb|U90347.1|PRU90347 Pinus radiata putative MADS box transcription factor PrMADS6 mRNA,
complete cds
Length = 993
Score = 118 bits (253), Expect(2) = 4e-038
Identities = 46/108 (42%), Positives = 77/108 (71%)
Frame = -2 / +3
Query: 995 RGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSV 816
RGK ++++IE+ TSRQVTF KRRNGLLKKAYE+SVLCDA++ L+VFS RG++YE+++ +
Sbjct: 81 RGKTQMRKIESATSRQVTFSKRRNGLLKKAYEMSVLCDAQLGLIVFSPRGKVYEFSSTCM 260
Query: 815 KSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNANTR 672
+ + RY+ + S + T E + Q +++ + + + I L++ + +
Sbjct: 261 QKMLARYENFSEGSKATSTAKEQDVQGLKRQIANMEERIEILESMHRK 404
Score = 60.6 bits (126), Expect(2) = 4e-038
Identities = 21/71 (29%), Positives = 43/71 (60%)
Frame = -2 / +3
Query: 674 RNIVGDSIHTMGLRDLKQMEGKLEKAIIKIRARKNELLYAEVDYMQKREMDLQTDNMYLR 495
R ++GD + + L+DL ++E ++E+ + +RARK E+L E++ +Q++E L +N +L
Sbjct: 399 RKMLGDELASCALKDLNELESQVERGLRNVRARKTEILVTEIEQLQRKEWILSEENAFLG 578
Query: 494 SKIAESNETGQ 462
K + +
Sbjct: 579 KKFVHPHSVSK 611
>gb|CF388230.1|CF388230 RTDR2_1_D05.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_1_D05_A021 5', mRNA
sequence
Length = 751
Score = 108 bits (231), Expect(2) = 5e-037
Identities = 44/54 (81%), Positives = 50/54 (92%)
Frame = -2 / -3
Query: 950 QVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVKSTIERYKK 789
QVTF KRRNGLLKKAYELSVLCDAEVA+++FS+RG+LYE+AN SV TIERYKK
Sbjct: 749 QVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSNRGKLYEFANKSVNRTIERYKK 588
Score = 67.0 bits (140), Expect(2) = 5e-037
Identities = 24/65 (36%), Positives = 48/65 (73%)
Frame = -2 / -3
Query: 674 RNIVGDSIHTMGLRDLKQMEGKLEKAIIKIRARKNELLYAEVDYMQKREMDLQTDNMYLR 495
RN++GD++ + L++L +E ++++ I +R+RK+E+L+ E++ +++RE L N +LR
Sbjct: 494 RNLMGDNLSALSLKELDLLEARIQRGIQSVRSRKDEILHQELEALREREQILLVQNDFLR 315
Query: 494 SKIAE 480
+KIAE
Sbjct: 314 NKIAE 300
>gb|DR167777.1|DR167777 RTPHOS1_21_A12.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_21_A12_A029 3', mRNA sequence
Length = 628
Score = 153 bits (329), Expect = 2e-036
Identities = 66/103 (64%), Positives = 78/103 (75%)
Frame = -2 / -2
Query: 998 GRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNS 819
GRGKIEIKRIENTTSR VTFC RRNGLLKKAYELSVLC+A+VAL++FS RG+L EYAN S
Sbjct: 318 GRGKIEIKRIENTTSRLVTFC*RRNGLLKKAYELSVLCEADVALIIFSERGKLSEYANKS 139
Query: 818 VKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSL 690
V TIERYKK + + +A+ +Q E+ KLR+ I L
Sbjct: 138 VDRTIERYKKTQKKEIQCKPITQASAELWQNEAQKLRREIDML 10
>gb|DR178023.1|DR178023 RTMNUT1_8_F12.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_8_F12_A029 5', mRNA sequence
Length = 811
Score = 126 bits (270), Expect(2) = 4e-035
Identities = 51/108 (47%), Positives = 77/108 (71%)
Frame = -2 / +1
Query: 995 RGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSV 816
RGK ++K+IEN TSRQVTF KRRNGLLKKA+ELSVLCDAEV L+VFS RG+LYE++ +
Sbjct: 145 RGKTQMKKIENVTSRQVTFSKRRNGLLKKAFELSVLCDAEVGLIVFSPRGKLYEFSRPCM 324
Query: 815 KSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNANTR 672
+++Y+K + +S + E + Q+ ++E + + + I L++ +
Sbjct: 325 GKLLQKYEKNSRESGINNAAKEKDTQHSKREIANMEEKIRILESTERK 468
Score = 42.8 bits (87), Expect(2) = 4e-035
Identities = 15/53 (28%), Positives = 35/53 (66%)
Frame = -2 / +1
Query: 674 RNIVGDSIHTMGLRDLKQMEGKLEKAIIKIRARKNELLYAEVDYMQKREMDLQ 516
R ++G ++ + +L Q++ ++E+ + +IR RKNELL ++ ++++ DL+
Sbjct: 463 RKMLGQNLASCSDEELSQLQSQVERGLNRIRRRKNELLMDRIEQLKRKCADLE 621
>gb|DR072089.1|DR072089 RTDK1_24_B10.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_24_B10_A029 3', mRNA sequence
Length = 768
Score = 126 bits (270), Expect(2) = 4e-035
Identities = 51/108 (47%), Positives = 77/108 (71%)
Frame = -2 / -3
Query: 995 RGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSV 816
RGK ++K+IEN TSRQVTF KRRNGLLKKA+ELSVLCDAEV L+VFS RG+LYE++ +
Sbjct: 640 RGKTQMKKIENVTSRQVTFSKRRNGLLKKAFELSVLCDAEVGLIVFSPRGKLYEFSRPCM 461
Query: 815 KSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNANTR 672
+++Y+K + +S + E + Q+ ++E + + + I L++ +
Sbjct: 460 GKLLQKYEKNSRESGINNAAKEKDTQHSKREIANMEEKIRILESTERK 317
Score = 42.8 bits (87), Expect(2) = 4e-035
Identities = 15/53 (28%), Positives = 35/53 (66%)
Frame = -2 / -3
Query: 674 RNIVGDSIHTMGLRDLKQMEGKLEKAIIKIRARKNELLYAEVDYMQKREMDLQ 516
R ++G ++ + +L Q++ ++E+ + +IR RKNELL ++ ++++ DL+
Sbjct: 322 RKMLGQNLASCSDEELSQLQSQVERGLNRIRRRKNELLMDRIEQLKRKCADLE 164
>gb|AW587800.1|AW587800 ST67B08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST67B08, mRNA sequence
Length = 457
Score = 148 bits (317), Expect = 1e-034
Identities = 61/113 (53%), Positives = 82/113 (72%)
Frame = -2 / +1
Query: 1022 GSGDRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGR 843
G G+++ RGK ++KRIEN TSRQVTFCKRRNGLLKKAYELSVLCDAEVAL+VFS RG+
Sbjct: 103 GKGEKRRTVRGKTQLKRIENGTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSPRGK 282
Query: 842 LYEYANNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQN 684
LYE+AN S++ + RY+K + S+ + T E + Q +E + + L++
Sbjct: 283 LYEFANPSMQKMLXRYEKCSEXSNPTSTAKEQDVQXXXREXXNMXEXXEXLES 441
>gb|CO367965.1|CO367965 RTK1_37_F12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_37_F12_A029 5', mRNA sequence
Length = 852
Score = 126 bits (270), Expect(2) = 1e-034
Identities = 51/108 (47%), Positives = 77/108 (71%)
Frame = -2 / +1
Query: 995 RGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSV 816
RGK ++K+IEN TSRQVTF KRRNGLLKKA+ELSVLCDAEV L+VFS RG+LYE++ +
Sbjct: 151 RGKTQMKKIENVTSRQVTFSKRRNGLLKKAFELSVLCDAEVGLIVFSPRGKLYEFSRPCM 330
Query: 815 KSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNANTR 672
+++Y+K + +S + E + Q+ ++E + + + I L++ +
Sbjct: 331 GKLLQKYEKNSRESGINNAAKEKDTQHSKREIANMEEKIRILESTERK 474
Score = 40.9 bits (83), Expect(2) = 1e-034
Identities = 14/53 (26%), Positives = 35/53 (66%)
Frame = -2 / +1
Query: 674 RNIVGDSIHTMGLRDLKQMEGKLEKAIIKIRARKNELLYAEVDYMQKREMDLQ 516
R ++G ++ + +L Q++ ++E+ + +I+ RKNELL ++ ++++ DL+
Sbjct: 469 RKMLGQNLASCSDEELSQLQSQVERGLNRIQRRKNELLMDRIEQLKRKCADLE 627
>gb|BQ696809.1|BQ696809 NXPV_045_E02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_045_E02 5' similar to Arabidopsis
thaliana sequence At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 540
Score = 147 bits (315), Expect = 2e-034
Identities = 61/110 (55%), Positives = 85/110 (77%)
Frame = -2 / +1
Query: 1013 DRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYE 834
+R+ RGK ++KRIENTTSRQVTF KRRNGLLKKAYELSVLCDAEV L+VFS RG+LYE
Sbjct: 166 ERRRMVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYE 345
Query: 833 YANNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQN 684
+ ++S++ +ERY+K + ++S + TV E N Q ++E + + + I L++
Sbjct: 346 FGSSSMQKIVERYQKYSDENSMNKTVREENTQSLKREIANMEETIXXLES 495
>gb|CO163263.1|CO163263 FLD1_40_B04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_B04_A029 5', mRNA sequence
Length = 841
Score = 147 bits (315), Expect = 2e-034
Identities = 61/114 (53%), Positives = 86/114 (75%)
Frame = -2 / +2
Query: 1013 DRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYE 834
+R+ RGK ++KRIENTTSRQVTF KRRNGLLKKAYELSVLCDAEV L+VFS RG+LYE
Sbjct: 32 ERRRMVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYE 211
Query: 833 YANNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNANTR 672
+ ++S++ +ERY+K + ++S + TV E N Q ++E + + + I L++ +
Sbjct: 212 FGSSSMQKIVERYQKYSDENSMNKTVREENTQSLKREIANMEETIRLLESTQRK 373
>gb|CO364965.1|CO364965 RTK1_22_G09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_G09_A029 5', mRNA sequence
Length = 833
Score = 147 bits (315), Expect = 2e-034
Identities = 61/114 (53%), Positives = 86/114 (75%)
Frame = -2 / +3
Query: 1013 DRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYE 834
+R+ RGK ++KRIENTTSRQVTF KRRNGLLKKAYELSVLCDAEV L+VFS RG+LYE
Sbjct: 165 ERRRMVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYE 344
Query: 833 YANNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNANTR 672
+ ++S++ +ERY+K + ++S + TV E N Q ++E + + + I L++ +
Sbjct: 345 FGSSSMQKIVERYQKYSDENSMNKTVREENTQSLKREIANMEETIRLLESTQRK 506
>gb|CX713480.1|CX713480 RTPQ1_9_E04.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_9_E04_A032 5', mRNA sequence
Length = 437
Score = 147 bits (315), Expect = 2e-034
Identities = 61/114 (53%), Positives = 86/114 (75%)
Frame = -2 / +3
Query: 1013 DRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYE 834
+R+ RGK ++KRIENTTSRQVTF KRRNGLLKKAYELSVLCDAEV L+VFS RG+LYE
Sbjct: 57 ERRRMVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYE 236
Query: 833 YANNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNANTR 672
+ ++S++ +ERY+K + ++S + TV E N Q ++E + + + I L++ +
Sbjct: 237 FGSSSMQKIVERYQKYSDENSMNKTVREENTQSLKREIANMEETIRLLESTQRK 398
>gb|CX713558.1|CX713558 RTPQ1_10_E02.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_10_E02_A032 5', mRNA sequence
Length = 513
Score = 147 bits (315), Expect = 2e-034
Identities = 61/114 (53%), Positives = 86/114 (75%)
Frame = -2 / +2
Query: 1013 DRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYE 834
+R+ RGK ++KRIENTTSRQVTF KRRNGLLKKAYELSVLCDAEV L+VFS RG+LYE
Sbjct: 80 ERRRMVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYE 259
Query: 833 YANNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNANTR 672
+ ++S++ +ERY+K + ++S + TV E N Q ++E + + + I L++ +
Sbjct: 260 FGSSSMQKIVERYQKYSDENSMNKTVREENTQSLKREIANMEETIRLLESTQRK 421
>gb|DR090702.1|DR090702 RTAL1_16_G11.g1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_16_G11_A029 5', mRNA sequence
Length = 808
Score = 147 bits (315), Expect = 2e-034
Identities = 61/114 (53%), Positives = 86/114 (75%)
Frame = -2 / +3
Query: 1013 DRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYE 834
+R+ RGK ++KRIENTTSRQVTF KRRNGLLKKAYELSVLCDAEV L+VFS RG+LYE
Sbjct: 237 ERRRMVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYE 416
Query: 833 YANNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNANTR 672
+ ++S++ +ERY+K + ++S + TV E N Q ++E + + + I L++ +
Sbjct: 417 FGSSSMQKIVERYQKYSDENSMNKTVREENTQSLKREIANMEETIRLLESTQRK 578
>gb|CO157702.1|CO157702 FLD1_1_B06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_1_B06_A029 5', mRNA sequence
Length = 703
Score = 126 bits (270), Expect(2) = 2e-034
Identities = 51/108 (47%), Positives = 77/108 (71%)
Frame = -2 / +3
Query: 995 RGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSV 816
RGK ++K+IEN TSRQVTF KRRNGLLKKA+ELSVLCDAEV L+VFS RG+LYE++ +
Sbjct: 93 RGKTQMKKIENVTSRQVTFSKRRNGLLKKAFELSVLCDAEVGLIVFSPRGKLYEFSRPCM 272
Query: 815 KSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNANTR 672
+++Y+K + +S + E + Q+ ++E + + + I L++ +
Sbjct: 273 GKLLQKYEKNSRESGINNAAKEKDTQHSKREIANMEEKIRILESTERK 416
Score = 40.5 bits (82), Expect(2) = 2e-034
Identities = 14/53 (26%), Positives = 34/53 (64%)
Frame = -2 / +3
Query: 674 RNIVGDSIHTMGLRDLKQMEGKLEKAIIKIRARKNELLYAEVDYMQKREMDLQ 516
R ++G ++ + +L Q++ ++E+ + +I+ RKNELL ++ + ++ DL+
Sbjct: 411 RKMLGQNLASCSDEELSQLQSQVERGLNRIQRRKNELLMDRIEQLNRKCADLE 569
>gb|AW010398.1|AW010398 ST06D02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST06D02, mRNA sequence
Length = 647
Score = 144 bits (309), Expect = 1e-033
Identities = 58/106 (54%), Positives = 84/106 (79%)
Frame = -2 / +3
Query: 998 GRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNS 819
GRG+++++RIEN +RQVTF KRRNGLLKKAYELSVLCDAEVAL++FS+RG+LYE+A++S
Sbjct: 27 GRGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFASSS 206
Query: 818 VKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNA 681
+ T+ERY+K + ++ V++ AQ + QE +KL+ + LQ +
Sbjct: 207 MNKTLERYEKCSYAMQDTTGVSDREAQNWHQEVTKLKGKVELLQRS 344
>gb|BQ290846.1|BQ290846 NXRV050_D03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV050_D03 5' similar to Arabidopsis thaliana
sequence At5g15800 transcription factor (AGL2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 546
Score = 144 bits (309), Expect = 1e-033
Identities = 58/106 (54%), Positives = 84/106 (79%)
Frame = -2 / +1
Query: 998 GRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNS 819
GRG+++++RIEN +RQVTF KRRNGLLKKAYELSVLCDAEVAL++FS+RG+LYE+A++S
Sbjct: 88 GRGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFASSS 267
Query: 818 VKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNA 681
+ T+ERY+K + ++ V++ AQ + QE +KL+ + LQ +
Sbjct: 268 MNKTLERYEKCSYAMQDTTGVSDREAQNWHQEVTKLKGKVELLQRS 405
>gb|DR013883.1|DR013883 HEAT1_22_D05.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_22_D05_A029 3', mRNA sequence
Length = 705
Score = 144 bits (309), Expect = 1e-033
Identities = 60/74 (81%), Positives = 67/74 (90%)
Frame = -2 / -1
Query: 1010 RQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEY 831
R GRGKIEIKRIENTT+RQVTF KRRNGLLKKAYELSVLCDAEVA+++FS+RG+LYE+
Sbjct: 570 RTRMGRGKIEIKRIENTTNRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSNRGKLYEF 391
Query: 830 ANNSVKSTIERYKK 789
AN SV TIERYKK
Sbjct: 390 ANKSVNRTIERYKK 349
>gb|U76726.1|PRU76726 Pinus radiata MADS-box protein (PrMADS3) mRNA, complete cds
Length = 1130
Score = 144 bits (309), Expect = 1e-033
Identities = 58/106 (54%), Positives = 84/106 (79%)
Frame = -2 / +1
Query: 998 GRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNS 819
GRG+++++RIEN +RQVTF KRRNGLLKKAYELSVLCDAEVAL++FS+RG+LYE+A++S
Sbjct: 4 GRGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFASSS 183
Query: 818 VKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNA 681
+ T+ERY+K + ++ V++ AQ + QE +KL+ + LQ +
Sbjct: 184 MNKTLERYEKCSYAMQDTTGVSDREAQNWHQEVTKLKGKVELLQRS 321
>gb|BG318835.1|BG318835 NXPV_020_D12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_020_D12 5' similar to Arabidopsis
thaliana sequence At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 527
Score = 143 bits (307), Expect = 2e-033
Identities = 60/114 (52%), Positives = 83/114 (72%)
Frame = -2 / +1
Query: 1013 DRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYE 834
+R+ RGK ++KRIENTTSRQVTF KRRNGLLKKAYELSVLCDAEV L+VFS RG+LYE
Sbjct: 166 ERRRMVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYE 345
Query: 833 YANNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNANTR 672
+ ++S++ +ERY+K + ++S + TV E N Q E + + + I ++ +
Sbjct: 346 FGSSSMQKIVERYQKYSDENSMNKTVREENTQSXXXEIANMEETIXXXESTQRK 507
>gb|DR060889.1|DR060889 RTNIT1_30_D12.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_30_D12_A029 5', mRNA sequence
Length = 796
Score = 143 bits (306), Expect = 3e-033
Identities = 60/117 (51%), Positives = 83/117 (70%)
Frame = -2 / +3
Query: 1022 GSGDRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGR 843
G G+++ RGK ++KRIEN TSRQVTF KRRNGLLKKAYELSVLCDAEVAL+VFS RG+
Sbjct: 27 GKGEKRRTVRGKTQMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALMVFSPRGK 206
Query: 842 LYEYANNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNANTR 672
LYE+AN S++ +ERY+K + S + E + + ++E + + + I L+ +
Sbjct: 207 LYEFANPSMQKMLERYEKCSEGSKTTSIAKEEDPKALKREIANMEERIEILERTQRK 377
>gb|DR079072.1|DR079072 RTFEPL1_8_G11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_8_G11_A029 5', mRNA sequence
Length = 829
Score = 140 bits (300), Expect = 2e-032
Identities = 58/94 (61%), Positives = 76/94 (80%)
Frame = -2 / +2
Query: 1013 DRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYE 834
+R+ RGK ++KRIENTTSRQVTF KRRNGLLKKAYELSVLCDAEV L+VFS RG+LYE
Sbjct: 134 ERRRMVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYE 313
Query: 833 YANNSVKSTIERYKKANSDSSNSGTVAEVNAQYY 732
+ ++S++ +ERY+K + ++S + TV E N Q +
Sbjct: 314 FGSSSMQKIVERYQKYSDENSMNKTVREENTQSF 415
>gb|U90344.1|PRU90344 Pinus radiata putative MADS box transcription factor PrMADS9 mRNA,
complete cds
Length = 1038
Score = 140 bits (300), Expect = 2e-032
Identities = 58/104 (55%), Positives = 77/104 (74%)
Frame = -2 / +2
Query: 1013 DRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYE 834
+R+ RGK ++KRIEN TSRQVTF KRRNGLLKKAYELSVLCDAEV L++FS RG+LYE
Sbjct: 107 ERRRMVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLYE 286
Query: 833 YANNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQM 702
+A+ S++ +E+YKK + ++ + T E + QY + KL M
Sbjct: 287 FASPSMEEILEKYKKRSKENGMAQTTKEQDTQYSKHSKQKLANM 418
>gb|CF475501.1|CF475501 RTWW2_12_G12.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_12_G12_A021 5', mRNA sequence
Length = 779
Score = 138 bits (297), Expect = 6e-032
Identities = 57/98 (58%), Positives = 74/98 (75%)
Frame = -2 / +2
Query: 995 RGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSV 816
RGK ++KRIEN TSRQVTF KRRNGLLKKAYELSVLCDAEV L++FS RG+LYE+A+ S+
Sbjct: 74 RGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLYEFASPSM 253
Query: 815 KSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQM 702
+ +E+YKK + ++ + T E + QY + KL M
Sbjct: 254 EEILEKYKKRSKENGMAQTTKEQDTQYSKHSKEKLANM 367
>gb|BG318417.1|BG318417 NXPV_013_D07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_013_D07 5' similar to Arabidopsis
thaliana sequence At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 577
Score = 138 bits (296), Expect = 8e-032
Identities = 57/98 (58%), Positives = 74/98 (75%)
Frame = -2 / +2
Query: 995 RGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSV 816
RGK ++KRIEN TSRQVTF KRRNGLLKKAYELSVLCDAEV L++FS RG+LYE+A+ S+
Sbjct: 125 RGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLYEFASPSM 304
Query: 815 KSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQM 702
+ +E+YKK + ++ + T E + QY + KL M
Sbjct: 305 EEILEKYKKRSKENGIAQTTKEQDTQYSKHSKQKLANM 418
>gb|DR384822.1|DR384822 RTHG1_4_G03.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_G03_A029 5', mRNA sequence
Length = 668
Score = 138 bits (296), Expect = 8e-032
Identities = 57/98 (58%), Positives = 74/98 (75%)
Frame = -2 / +2
Query: 995 RGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSV 816
RGK ++KRIEN TSRQVTF KRRNGLLKKAYELSVLCDAEV L++FS RG+LYE+A+ S+
Sbjct: 125 RGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLYEFASPSM 304
Query: 815 KSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQM 702
+ +E+YKK + ++ + T E + QY + KL M
Sbjct: 305 EEILEKYKKRSKENGIAQTTKEQDTQYSKHSKQKLANM 418
>gb|CO169756.1|CO169756 NDL1_9_A05.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_9_A05_A029 5', mRNA sequence
Length = 753
Score = 137 bits (294), Expect = 1e-031
Identities = 57/119 (47%), Positives = 87/119 (73%)
Frame = -2 / +3
Query: 1013 DRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYE 834
+R RGK +++RIEN TSRQVTF KRRNGLLKKAYELSVLCDAEVAL+VFS RG+++E
Sbjct: 261 ERTRMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSPRGKVHE 440
Query: 833 YANNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNANTRNIVGD 657
+A+ S++ +++Y+K + +S S E N Q+ + E +++ + ++ L++A + + D
Sbjct: 441 FASPSMQRVLDKYQKYSQESGISDRTKEKNTQHLKGEIAQMEERVNILESAQRKMLGED 617
>gb|DR168055.1|DR168055 RTPHOS1_22_H02.g1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_22_H02_A029 5', mRNA sequence
Length = 662
Score = 137 bits (294), Expect = 1e-031
Identities = 57/119 (47%), Positives = 87/119 (73%)
Frame = -2 / +2
Query: 1013 DRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYE 834
+R RGK +++RIEN TSRQVTF KRRNGLLKKAYELSVLCDAEVAL+VFS RG+++E
Sbjct: 35 ERTRMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSPRGKVHE 214
Query: 833 YANNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNANTRNIVGD 657
+A+ S++ +++Y+K + +S S E N Q+ + E +++ + ++ L++A + + D
Sbjct: 215 FASPSMQRVLDKYQKYSQESGISDRTKEKNTQHLKGEIAQMEERVNILESAQRKMLGED 391
>gb|U90348.1|PRU90348 Pinus radiata putative MADS box transcription factor PrMADS7 mRNA,
complete cds
Length = 866
Score = 136 bits (292), Expect = 3e-031
Identities = 57/95 (60%), Positives = 72/95 (75%)
Frame = -2 / +1
Query: 1022 GSGDRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGR 843
G G+++ RGK ++KRIEN TSRQVTFCKRRNGLLKKAYELSVLCDAEVAL+VFS RG+
Sbjct: 91 GKGEKRRTVRGKTQLKRIENGTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSPRGK 270
Query: 842 LYEYANNSVKSTIERYKKANSDSSNSGTVAEVNAQ 738
YE+AN S++ + RY+ + S + T E + Q
Sbjct: 271 RYEFANPSMQKMLARYENFSEGSKATSTAKEQDVQ 375
>gb|AW290406.1|AW290406 NXNV019H03F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV019H03 5', mRNA sequence
Length = 464
Score = 134 bits (288), Expect = 1e-030
Identities = 56/90 (62%), Positives = 73/90 (81%)
Frame = -2 / +1
Query: 1013 DRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYE 834
+R+ RGK ++KRIENTTSRQVTF KRRNGLLKKAYELSVLCDAEV L+VFS RG+LYE
Sbjct: 175 ERRRMVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYE 354
Query: 833 YANNSVKSTIERYKKANSDSSNSGTVAEVN 744
+ ++S++ + RY+K + ++S + TV E N
Sbjct: 355 FGSSSMQKIVXRYQKYSDENSMNKTVREEN 444
>gb|BG625803.1|BG625803 NXPV_066_C06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_066_C06 5' similar to Arabidopsis
thaliana sequence At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 428
Score = 134 bits (288), Expect = 1e-030
Identities = 56/98 (57%), Positives = 72/98 (73%)
Frame = -2 / +2
Query: 995 RGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSV 816
RGK ++KRIEN TSRQVTF KRRNGLLKKAYELSVLCDAEV L++FS RG+LYE+A+ S+
Sbjct: 125 RGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLYEFASPSM 304
Query: 815 KSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQM 702
+ +E+YKK + + + T E + QY + K M
Sbjct: 305 EEILEKYKKRSKXNGIAQTTKEQDTQYSKHSKQKXANM 418
>gb|CD027064.1|CD027064 NXNV019H03 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV019H03 5' similar to Arabidopsis thaliana sequence
At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 464
Score = 134 bits (288), Expect = 1e-030
Identities = 56/90 (62%), Positives = 73/90 (81%)
Frame = -2 / +1
Query: 1013 DRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYE 834
+R+ RGK ++KRIENTTSRQVTF KRRNGLLKKAYELSVLCDAEV L+VFS RG+LYE
Sbjct: 175 ERRRMVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYE 354
Query: 833 YANNSVKSTIERYKKANSDSSNSGTVAEVN 744
+ ++S++ + RY+K + ++S + TV E N
Sbjct: 355 FGSSSMQKIVXRYQKYSDENSMNKTVREEN 444
>gb|BQ654531.1|BQ654531 NXRV081_H04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV081_H04 5' similar to Arabidopsis thaliana
sequence At5g15800 transcription factor (AGL2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 436
Score = 134 bits (287), Expect = 1e-030
Identities = 54/96 (56%), Positives = 77/96 (80%)
Frame = -2 / +2
Query: 998 GRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNS 819
GRG+++++RIEN +RQVTF KRRNGLLKKAYELSVLCDAEVAL++FS+RG+LYE+A++S
Sbjct: 65 GRGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFASSS 244
Query: 818 VKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKL 711
+ T+ERY+K + ++ V++ AQ + S K+
Sbjct: 245 MNKTLERYEKCSYAMQDTTGVSDREAQNWXXRSYKV 352
>gb|AA556486.1|AA556486 341 Loblolly pine C Pinus taeda cDNA clone 4C5B, mRNA sequence
Length = 656
Score = 131 bits (281), Expect = 9e-030
Identities = 55/119 (46%), Positives = 84/119 (70%)
Frame = -2 / +3
Query: 1013 DRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYE 834
+R RG +++RIEN TSRQVTF KRRNGLLKKAYELSVLCDAEVAL+VFS RG+++E
Sbjct: 111 ERTRMVRGXTQMRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSPRGKVHE 290
Query: 833 YANNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNANTRNIVGD 657
+A+ S++ +++Y+K + +S S E N + + E + + + ++ L++A + + D
Sbjct: 291 FASPSMQRVLDKYQKXSXESGISDRTKEKNTPHLKGEIAXMEERVNILESAXRKMLGED 467
>gb|DR058437.1|DR058437 RTNIT1_11_F11.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_11_F11_A029 5', mRNA sequence
Length = 795
Score = 114 bits (244), Expect(2) = 3e-029
Identities = 46/60 (76%), Positives = 54/60 (90%)
Frame = -2 / +3
Query: 998 GRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNS 819
GRGKIEIK+IEN+ RQVTFCKRR GL+KKAYELSVLCDA+VAL+VFSSRG+LYE ++
Sbjct: 204 GRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTSN 383
Score = 35.0 bits (70), Expect(2) = 3e-029
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = -2 / +3
Query: 827 NNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNAN 678
NNS++S +ERY+K + + + + + +QE + L+Q I L+ N
Sbjct: 390 NNSMRSILERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTN 539
>gb|CF394057.1|CF394057 RTDS2_3_D04.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_3_D04_A021 3', mRNA sequence
Length = 611
Score = 114 bits (244), Expect(2) = 3e-029
Identities = 46/60 (76%), Positives = 54/60 (90%)
Frame = -2 / -3
Query: 998 GRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNS 819
GRGKIEIK+IEN+ RQVTFCKRR GL+KKAYELSVLCDA+VAL+VFSSRG+LYE ++
Sbjct: 474 GRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTSN 295
Score = 35.0 bits (70), Expect(2) = 3e-029
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = -2 / -3
Query: 827 NNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNAN 678
NNS++S +ERY+K + + + + + +QE + L+Q I L+ N
Sbjct: 288 NNSMRSILERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTN 139
>gb|DR081124.1|DR081124 RTFEPL1_27_C11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_27_C11_A029 5', mRNA sequence
Length = 407
Score = 129 bits (276), Expect = 4e-029
Identities = 55/104 (52%), Positives = 73/104 (70%)
Frame = -2 / +2
Query: 1013 DRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYE 834
+R+ RGK +KRIEN TSRQVTF KRRNGLLKKAYELSVLCDA V L++FS G+LYE
Sbjct: 65 ERRRMVRGKTHMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDA*VGLIIFSPGGKLYE 244
Query: 833 YANNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQM 702
+A+ S++ +E+YKK + + + T + + QY + KL M
Sbjct: 245 FASPSMEEILEKYKKRSKEYGMAQTTKDQDTQYSKHSKQKLANM 376
>gb|U90346.1|PRU90346 Pinus radiata putative MADS box transcription factor PrMADS5 mRNA,
complete cds
Length = 1301
Score = 127 bits (273), Expect = 1e-028
Identities = 54/114 (47%), Positives = 78/114 (68%)
Frame = -2 / +1
Query: 1013 DRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYE 834
+R+ RGK ++KRIEN TSRQVT KRRNGLLKKAYELSVLCDAEV L+VFS G+LYE
Sbjct: 157 ERRRMVRGKTQMKRIENATSRQVTLSKRRNGLLKKAYELSVLCDAEVGLIVFSPSGKLYE 336
Query: 833 YANNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNANTR 672
+A+ S++ +E+Y+ + + S + + + Q +QE + + + LQ+ +
Sbjct: 337 FASTSMQKLLEKYEICSQECGTSESNKKQDPQCLKQEIENMEKRVRILQSTQRK 498
>gb|U42400.1|PRU42400 Pinus radiata putative MADS-box family transcription factor (PrMADS2)
mRNA, complete cds
Length = 1064
Score = 127 bits (273), Expect = 1e-028
Identities = 50/76 (65%), Positives = 65/76 (85%)
Frame = -2 / +2
Query: 1010 RQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEY 831
++ GRG++E+KRIEN +RQVTF KRRNGLLKKAYELSVLCDAEVAL++FSSRG+LYE+
Sbjct: 86 KERMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF 265
Query: 830 ANNSVKSTIERYKKAN 783
+ + T+ERY+K +
Sbjct: 266 GSAGMLKTLERYQKCS 313
>gb|AW754659.1|AW754659 PC04G10 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC04G10, mRNA sequence
Length = 526
Score = 127 bits (272), Expect = 2e-028
Identities = 55/68 (80%), Positives = 58/68 (85%)
Frame = -2 / +1
Query: 1007 QGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 828
Q GRGKIEIKRIENTT+RQVTFCKRRNGLLKKAYELSVLCDAEV L+V SRGRLYE
Sbjct: 322 QIMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVXLIVXXSRGRLYEXX 501
Query: 827 NNSVKSTI 804
+SV TI
Sbjct: 502 XHSVXXTI 525
>gb|CX645838.1|CX645838 COLD1_5_D01.g1_A029 Root cold Pinus taeda cDNA clone COLD1_5_D01_A029
5', mRNA sequence
Length = 705
Score = 127 bits (272), Expect = 2e-028
Identities = 54/114 (47%), Positives = 78/114 (68%)
Frame = -2 / +2
Query: 1013 DRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYE 834
+R+ RGK ++KRIEN TSRQVT KRRNGLLKKAYELSVLCDAEV L+VFS G+LYE
Sbjct: 155 ERRRMVRGKTQMKRIENPTSRQVTLSKRRNGLLKKAYELSVLCDAEVGLIVFSPSGKLYE 334
Query: 833 YANNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNANTR 672
+A+ S++ +E+Y+ + + S + + + Q +QE + + + LQ+ +
Sbjct: 335 FASTSMQKLLEKYEIGSQECGTSESNKKQDPQCLKQEIENMEKRVRILQSTQRK 496
>gb|DR177222.1|DR177222 RTMNUT1_3_H10.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_3_H10_A029 5', mRNA sequence
Length = 770
Score = 127 bits (272), Expect = 2e-028
Identities = 54/114 (47%), Positives = 78/114 (68%)
Frame = -2 / +3
Query: 1013 DRQGQGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYE 834
+R+ RGK ++KRIEN TSRQVT KRRNGLLKKAYELSVLCDAEV L+VFS G+LYE
Sbjct: 168 ERRRMVRGKTQMKRIENPTSRQVTLSKRRNGLLKKAYELSVLCDAEVGLIVFSPSGKLYE 347
Query: 833 YANNSVKSTIERYKKANSDSSNSGTVAEVNAQYYQQESSKLRQMIHSLQNANTR 672
+A+ S++ +E+Y+ + + S + + + Q +QE + + + LQ+ +
Sbjct: 348 FASTSMQKLLEKYEIGSQECGTSESNKKQDPQCLKQEIENMEKRVRILQSTQRK 509
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 531,080,540
Number of Sequences: 355925
Number of extensions: 7600109
Number of successful extensions: 51903
Number of sequences better than 1.0e-020: 174
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 19335780920
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)