TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3754578.2.1
(725 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX712891.1|CX712891 RTPQ1_5_B06.g1_A032 Roots treated wi... 146 1e-034
gb|DR111377.1|DR111377 RTS1_17_F12.b1_A029 Roots minus sulf... 146 1e-034
gb|DR116979.1|DR116979 RTMG1_4_B01.b1_A029 Roots minus magn... 146 1e-034
gb|DR117061.1|DR117061 RTMG1_4_B01.g1_A029 Roots minus magn... 146 1e-034
gb|DR694121.1|DR694121 EST1084211 Normalized pine embryo li... 137 6e-032
gb|DT638404.1|DT638404 EST1153335 Normalized pine embryo li... 137 8e-032
>gb|CX712891.1|CX712891 RTPQ1_5_B06.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_5_B06_A032 5', mRNA sequence
Length = 781
Score = 146 bits (314), Expect = 1e-034
Identities = 49/66 (74%), Positives = 61/66 (92%)
Frame = -3 / -1
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE+FN++ PVQYSH WKFCQ+GC+++YYTAHYQSPRQM+C+WDKL +G+A C
Sbjct: 346 EDVSMGMWVEQFNASTPVQYSHDWKFCQFGCIDDYYTAHYQSPRQMICMWDKLSKGKAQC 167
Query: 537 CNYR*Q 520
CN R*Q
Sbjct: 166 CNVR*Q 149
>gb|DR111377.1|DR111377 RTS1_17_F12.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_17_F12_A029 3', mRNA sequence
Length = 674
Score = 146 bits (314), Expect = 1e-034
Identities = 49/66 (74%), Positives = 61/66 (92%)
Frame = -3 / +2
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE+FN++ PVQYSH WKFCQ+GC+++YYTAHYQSPRQM+C+WDKL +G+A C
Sbjct: 149 EDVSMGMWVEQFNASTPVQYSHDWKFCQFGCIDDYYTAHYQSPRQMICMWDKLSKGKAQC 328
Query: 537 CNYR*Q 520
CN R*Q
Sbjct: 329 CNVR*Q 346
>gb|DR116979.1|DR116979 RTMG1_4_B01.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_4_B01_A029 3', mRNA sequence
Length = 725
Score = 146 bits (314), Expect = 1e-034
Identities = 49/66 (74%), Positives = 61/66 (92%)
Frame = -3 / +3
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE+FN++ PVQYSH WKFCQ+GC+++YYTAHYQSPRQM+C+WDKL +G+A C
Sbjct: 231 EDVSMGMWVEQFNASTPVQYSHDWKFCQFGCIDDYYTAHYQSPRQMICMWDKLSKGKAQC 410
Query: 537 CNYR*Q 520
CN R*Q
Sbjct: 411 CNVR*Q 428
>gb|DR117061.1|DR117061 RTMG1_4_B01.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_4_B01_A029 5', mRNA sequence
Length = 800
Score = 146 bits (314), Expect = 1e-034
Identities = 49/66 (74%), Positives = 61/66 (92%)
Frame = -3 / +3
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE+FN++ PVQYSH WKFCQ+GC+++YYTAHYQSPRQM+C+WDKL +G+A C
Sbjct: 360 EDVSMGMWVEQFNASTPVQYSHDWKFCQFGCIDDYYTAHYQSPRQMICMWDKLSKGKAQC 539
Query: 537 CNYR*Q 520
CN R*Q
Sbjct: 540 CNVR*Q 557
>gb|DR694121.1|DR694121 EST1084211 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE837 3' end, mRNA sequence
Length = 746
Score = 137 bits (294), Expect(2) = 6e-032
Identities = 45/62 (72%), Positives = 58/62 (93%)
Frame = -3 / +3
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE+FN+++ VQYSH+WKFCQYGC ++YYTAHYQSPRQMLC+WDKL++G+ C
Sbjct: 195 EDVSMGMWVEQFNASSRVQYSHNWKFCQYGCTDDYYTAHYQSPRQMLCMWDKLLKGKVEC 374
Query: 537 CN 532
C+
Sbjct: 375 CS 380
Score = 22.1 bits (42), Expect(2) = 6e-032
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1 / +3
Query: 83 SRSDVRLRSFLIVITRH 33
S +D RSF+++ TRH
Sbjct: 657 SYADKIFRSFILLFTRH 707
>gb|DT638404.1|DT638404 EST1153335 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHE72 3' end, mRNA sequence
Length = 824
Score = 137 bits (294), Expect = 8e-032
Identities = 45/62 (72%), Positives = 58/62 (93%)
Frame = -3 / +2
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
EDVSMG+WVE+FN+++ VQYSH+WKFCQYGC ++YYTAHYQSPRQMLC+WDKL++G+ C
Sbjct: 272 EDVSMGMWVEQFNASSRVQYSHNWKFCQYGCTDDYYTAHYQSPRQMLCMWDKLLKGKVEC 451
Query: 537 CN 532
C+
Sbjct: 452 CS 457
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 453,811,371
Number of Sequences: 355925
Number of extensions: 7227653
Number of successful extensions: 54347
Number of sequences better than 1.0e-020: 6
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10190434905
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)