TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3742446.2.1
(598 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR055655.1|DR055655 RTCA1_25_C02.b1_A029 Roots minus cal... 153 2e-063
gb|DR091853.1|DR091853 RTAL1_24_A01.g1_A029 Roots plus adde... 153 3e-063
gb|DR019714.1|DR019714 STRS1_31_H11.g1_A034 Shoot tip pitch... 153 3e-063
gb|DR094032.1|DR094032 STRR1_12_B03.b1_A033 Stem Response R... 151 1e-062
gb|DR013664.1|DR013664 HEAT1_20_F02.g1_A029 Root at 37 C fo... 138 7e-059
gb|CO164857.1|CO164857 FLD1_50_F04.g1_A029 Root flooded Pin... 141 1e-054
gb|CO169436.1|CO169436 NDL1_7_C03.b1_A029 Needles control P... 153 4e-053
gb|DR054674.1|DR054674 RTCA1_18_G02.g1_A029 Roots minus cal... 110 8e-051
gb|CF390924.1|CF390924 RTDR3_2_H05.g1_A022 Loblolly pine ro... 122 7e-048
gb|DR094305.1|DR094305 STRR1_13_F01.g1_A033 Stem Response R... 122 4e-047
gb|DR091441.1|DR091441 RTAL1_21_D07.g1_A029 Roots plus adde... 123 9e-047
gb|DR178543.1|DR178543 RTMNUT1_12_A07.g1_A029 Roots minus m... 123 2e-046
gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA... 118 3e-046
gb|BX681734.1|BX681734 BX681734 RS Pinus pinaster cDNA clon... 153 5e-046
gb|AW056671.1|AW056671 ST54D07 Pine TriplEx shoot tip libra... 101 6e-045
gb|CX651881.1|CX651881 COLD1_55_A04.g1_A029 Root cold Pinus... 110 1e-044
gb|CF392740.1|CF392740 RTDR3_5_G10.g1_A022 Loblolly pine ro... 118 2e-044
gb|CF666831.1|CF666831 RTCNT1_26_A11.g1_A029 Root control P... 101 2e-038
gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calc... 153 1e-037
gb|DR388562.1|DR388562 RTHG1_29_B07.b1_A029 Roots plus adde... 112 4e-037
gb|DR743237.1|DR743237 RTCU1_14_B08.g1_A029 Roots plus adde... 104 7e-037
gb|CR394381.1|CR394381 CR394381 RN Pinus pinaster cDNA clon... 100 7e-037
gb|CX652380.1|CX652380 COLD1_58_E05.g1_A029 Root cold Pinus... 153 9e-037
gb|DR744730.1|DR744730 RTCU1_24_B09.g1_A029 Roots plus adde... 66 1e-036
gb|CF671986.1|CF671986 RTCNT1_60_C07.g1_A029 Root control P... 82 8e-033
gb|CO199490.1|CO199490 GEO2_1_C06.g1_A032 Root gravitropism... 84 3e-032
gb|DR094103.1|DR094103 STRR1_12_B03.g1_A033 Stem Response R... 138 4e-032
gb|CO174896.1|CO174896 NDL1_47_A06.b1_A029 Needles control ... 83 1e-031
gb|DR164307.1|DR164307 RTFE1_48_D09.b1_A029 Roots minus iro... 134 6e-031
gb|DR385449.1|DR385449 RTHG1_8_F01.g1_A029 Roots plus added... 63 7e-031
gb|CO362034.1|CO362034 NDL2_8_E08.g1_A029 Needles control 2... 116 9e-031
gb|DR019596.1|DR019596 STRS1_31_D05.b1_A034 Shoot tip pitch... 133 1e-030
gb|DR052378.1|DR052378 RTCA1_4_F07.b1_A029 Roots minus calc... 127 5e-029
gb|CF477776.1|CF477776 RTWW3_9_B03.g1_A022 Well-watered lob... 101 7e-027
gb|CO162287.1|CO162287 FLD1_34_H05.b1_A029 Root flooded Pin... 118 3e-026
gb|CX649586.1|CX649586 COLD1_36_E07.b1_A029 Root cold Pinus... 118 3e-026
gb|DR014719.1|DR014719 HEAT1_51_E12.b1_A029 Root at 37 C fo... 82 4e-026
gb|BX680137.1|BX680137 BX680137 RS Pinus pinaster cDNA clon... 101 5e-026
gb|DR690593.1|DR690593 EST1080679 Normalized pine embryo li... 114 6e-025
gb|DT636173.1|DT636173 EST1151104 Normalized pine embryo li... 114 6e-025
gb|DR091066.1|DR091066 RTAL1_19_E03.b1_A029 Roots plus adde... 101 6e-023
gb|DR081573.1|DR081573 RTFEPL1_30_D11.g1_A029 Roots plus ad... 101 6e-023
gb|DR024643.1|DR024643 STRS1_66_A03.g1_A034 Shoot tip pitch... 101 6e-023
gb|DR387566.1|DR387566 RTHG1_22_E08.g2_A029 Roots plus adde... 106 1e-022
gb|DR081852.1|DR081852 RTFEPL1_32_F12.g1_A029 Roots plus ad... 102 3e-021
>gb|DR055655.1|DR055655 RTCA1_25_C02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_25_C02_A029 3', mRNA sequence
Length = 696
Score = 153 bits (329), Expect(3) = 2e-063
Identities = 60/117 (51%), Positives = 76/117 (64%)
Frame = +2 / -3
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY + YR+KYQ QKGKIGILLDFVWYEP ++S+
Sbjct: 442 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 263
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTSF 589
FH+GWFL PI +G+YP SM EI RLP F+ E+++M KGSIDY+G+N YT++
Sbjct: 262 RSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKEQSQMVKGSIDYLGVNQYTAY 92
Score = 101 bits (215), Expect(3) = 2e-063
Identities = 38/54 (70%), Positives = 44/54 (81%)
Frame = +2 / -3
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G L+ ++VE +A +AEFCF FGDRVK W TFNEPR VAALGYDNG+ APGRCS
Sbjct: 628 GLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 467
Score = 85.4 bits (180), Expect(2) = 6e-032
Identities = 41/110 (37%), Positives = 67/110 (60%)
Frame = -1 / +2
Query: 583 SVVVDANIVYRAFRHPGFFIAEQR*PVFGNLLHRVRVPSMYNGVKEPA*VEVPGSLCCSL 404
SV+V+A IVY F H G F+ + P N HR+R+ + N +++P+ +E+P SL SL
Sbjct: 98 SVLVNA*IVY*TFNHLGLFLCKLGQPCPNNFHHRIRIFPIGNRMEKPSNMEIP*SLSRSL 277
Query: 403 VRIAVAERFVPHEIQENSNLPLLVKLILVAVSPGRSCMRKDEMVCDKVRF 254
V + +R +P+++Q+ N LL LIL +++ S M K ++VC+ V F
Sbjct: 278 VLTGICKRLIPYKVQKYPNFSLLHGLILFSINLYSSSM*KQQIVCNNVGF 427
Score = 73.5 bits (154), Expect(4) = 1e-024
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = -2 / +3
Query: 486 IEYGYRPCTMGSRNQPRWKSLARCAAAWSALLSLKGSYHTKSRRIPIFPF 337
IE GY P +G RN P WKSL AA WS+L ++GSYHTKS+ IPIFPF
Sbjct: 195 IESGYFP*VIGWRNHPIWKSLDL*AAPWSSLEFVRGSYHTKSKSIPIFPF 344
Score = 72.1 bits (151), Expect(2) = 6e-032
Identities = 37/63 (58%), Positives = 39/63 (61%)
Frame = -2 / +3
Query: 222 EHLPGACKPLS*PRAATHLGSLKVNQFFTLSPNAWKQNSA*SANASTIFGLSQPRSVHGV 43
EHLPGA PLS*PRAAT GSL V Q+FTLSP KQNSA A +ST S P
Sbjct: 468 EHLPGAKMPLS*PRAATTRGSLNVIQYFTLSPKVLKQNSANFA*SSTTLEFSNPP*AVSS 647
Query: 42 PMG 34
P G
Sbjct: 648 PSG 656
Score = 50.6 bits (104), Expect(4) = 1e-024
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = -1 / +2
Query: 217 PSRCVQAIVVAQSSDAPRLVEGKPVLHPVSERVEAELGVVCKRLHN 80
PSR AIVV +SS+ P L+E PV HPV++ EAEL C L+N
Sbjct: 473 PSRSKNAIVVTKSSNNPWLIECHPVFHPVTKGFEAELCKFCIVLNN 610
Score = 26.7 bits (52), Expect(3) = 2e-063
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3 / -3
Query: 3 AASTNLYHYDLPLAL 47
+A NLYHYDLP L
Sbjct: 688 SALCNLYHYDLPEGL 644
Score = 23.5 bits (45), Expect(4) = 1e-024
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2 / +3
Query: 288 ERMRWCATRYGSVVELPPAGHP 223
E + CAT GSV E P P
Sbjct: 393 ESSKLCATM*GSVAEFPAVQFP 458
Score = 21.7 bits (41), Expect(4) = 1e-024
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2 / +3
Query: 576 WLMPT*SIEP 547
WL P *SIEP
Sbjct: 105 WLTPR*SIEP 134
>gb|DR091853.1|DR091853 RTAL1_24_A01.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_24_A01_A029 5', mRNA sequence
Length = 788
Score = 153 bits (329), Expect(3) = 3e-063
Identities = 60/117 (51%), Positives = 76/117 (64%)
Frame = +2 / +2
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY + YR+KYQ QKGKIGILLDFVWYEP ++S+
Sbjct: 344 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 523
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTSF 589
FH+GWFL PI +G+YP SM EI RLP F+ E+++M KGSIDY+G+N YT++
Sbjct: 524 RSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKEQSQMVKGSIDYLGVNQYTAY 694
Score = 101 bits (215), Expect(3) = 3e-063
Identities = 38/54 (70%), Positives = 44/54 (81%)
Frame = +2 / +2
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G L+ ++VE +A +AEFCF FGDRVK W TFNEPR VAALGYDNG+ APGRCS
Sbjct: 158 GLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 319
Score = 85.4 bits (180), Expect(2) = 6e-032
Identities = 41/110 (37%), Positives = 67/110 (60%)
Frame = -1 / -2
Query: 583 SVVVDANIVYRAFRHPGFFIAEQR*PVFGNLLHRVRVPSMYNGVKEPA*VEVPGSLCCSL 404
SV+V+A IVY F H G F+ + P N HR+R+ + N +++P+ +E+P SL SL
Sbjct: 688 SVLVNA*IVY*TFNHLGLFLCKLGQPCPNNFHHRIRIFPIGNRMEKPSNMEIP*SLSRSL 509
Query: 403 VRIAVAERFVPHEIQENSNLPLLVKLILVAVSPGRSCMRKDEMVCDKVRF 254
V + +R +P+++Q+ N LL LIL +++ S M K ++VC+ V F
Sbjct: 508 VLTGICKRLIPYKVQKYPNFSLLHGLILFSINLYSSSM*KQQIVCNNVGF 359
Score = 73.5 bits (154), Expect(4) = 2e-024
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = -2 / -3
Query: 486 IEYGYRPCTMGSRNQPRWKSLARCAAAWSALLSLKGSYHTKSRRIPIFPF 337
IE GY P +G RN P WKSL AA WS+L ++GSYHTKS+ IPIFPF
Sbjct: 591 IESGYFP*VIGWRNHPIWKSLDL*AAPWSSLEFVRGSYHTKSKSIPIFPF 442
Score = 72.1 bits (151), Expect(2) = 6e-032
Identities = 37/63 (58%), Positives = 39/63 (61%)
Frame = -2 / -3
Query: 222 EHLPGACKPLS*PRAATHLGSLKVNQFFTLSPNAWKQNSA*SANASTIFGLSQPRSVHGV 43
EHLPGA PLS*PRAAT GSL V Q+FTLSP KQNSA A +ST S P
Sbjct: 318 EHLPGAKMPLS*PRAATTRGSLNVIQYFTLSPKVLKQNSANFA*SSTTLEFSNPP*AVSS 139
Query: 42 PMG 34
P G
Sbjct: 138 PSG 130
Score = 50.6 bits (104), Expect(4) = 2e-024
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = -1 / -2
Query: 217 PSRCVQAIVVAQSSDAPRLVEGKPVLHPVSERVEAELGVVCKRLHN 80
PSR AIVV +SS+ P L+E PV HPV++ EAEL C L+N
Sbjct: 313 PSRSKNAIVVTKSSNNPWLIECHPVFHPVTKGFEAELCKFCIVLNN 176
Score = 25.8 bits (50), Expect(3) = 3e-063
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3 / +2
Query: 15 NLYHYDLPLAL 47
NLYHYDLP L
Sbjct: 110 NLYHYDLPEGL 142
Score = 23.5 bits (45), Expect(4) = 2e-024
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2 / -3
Query: 288 ERMRWCATRYGSVVELPPAGHP 223
E + CAT GSV E P P
Sbjct: 393 ESSKLCATM*GSVAEFPAVQFP 328
Score = 21.7 bits (41), Expect(4) = 2e-024
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2 / -3
Query: 576 WLMPT*SIEP 547
WL P *SIEP
Sbjct: 681 WLTPR*SIEP 652
>gb|DR019714.1|DR019714 STRS1_31_H11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_H11_A034 5', mRNA sequence
Length = 739
Score = 153 bits (329), Expect(3) = 3e-063
Identities = 60/117 (51%), Positives = 76/117 (64%)
Frame = +2 / +1
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY + YR+KYQ QKGKIGILLDFVWYEP ++S+
Sbjct: 331 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 510
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTSF 589
FH+GWFL PI +G+YP SM EI RLP F+ E+++M KGSIDY+G+N YT++
Sbjct: 511 RSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKEQSQMVKGSIDYLGVNQYTAY 681
Score = 101 bits (215), Expect(3) = 3e-063
Identities = 38/54 (70%), Positives = 44/54 (81%)
Frame = +2 / +1
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G L+ ++VE +A +AEFCF FGDRVK W TFNEPR VAALGYDNG+ APGRCS
Sbjct: 145 GLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 306
Score = 85.4 bits (180), Expect(2) = 6e-032
Identities = 41/110 (37%), Positives = 67/110 (60%)
Frame = -1 / -2
Query: 583 SVVVDANIVYRAFRHPGFFIAEQR*PVFGNLLHRVRVPSMYNGVKEPA*VEVPGSLCCSL 404
SV+V+A IVY F H G F+ + P N HR+R+ + N +++P+ +E+P SL SL
Sbjct: 675 SVLVNA*IVY*TFNHLGLFLCKLGQPCPNNFHHRIRIFPIGNRMEKPSNMEIP*SLSRSL 496
Query: 403 VRIAVAERFVPHEIQENSNLPLLVKLILVAVSPGRSCMRKDEMVCDKVRF 254
V + +R +P+++Q+ N LL LIL +++ S M K ++VC+ V F
Sbjct: 495 VLTGICKRLIPYKVQKYPNFSLLHGLILFSINLYSSSM*KQQIVCNNVGF 346
Score = 73.5 bits (154), Expect(4) = 2e-024
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = -2 / -3
Query: 486 IEYGYRPCTMGSRNQPRWKSLARCAAAWSALLSLKGSYHTKSRRIPIFPF 337
IE GY P +G RN P WKSL AA WS+L ++GSYHTKS+ IPIFPF
Sbjct: 578 IESGYFP*VIGWRNHPIWKSLDL*AAPWSSLEFVRGSYHTKSKSIPIFPF 429
Score = 72.1 bits (151), Expect(2) = 6e-032
Identities = 37/63 (58%), Positives = 39/63 (61%)
Frame = -2 / -3
Query: 222 EHLPGACKPLS*PRAATHLGSLKVNQFFTLSPNAWKQNSA*SANASTIFGLSQPRSVHGV 43
EHLPGA PLS*PRAAT GSL V Q+FTLSP KQNSA A +ST S P
Sbjct: 305 EHLPGAKMPLS*PRAATTRGSLNVIQYFTLSPKVLKQNSANFA*SSTTLEFSNPP*AVSS 126
Query: 42 PMG 34
P G
Sbjct: 125 PSG 117
Score = 50.6 bits (104), Expect(4) = 2e-024
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = -1 / -2
Query: 217 PSRCVQAIVVAQSSDAPRLVEGKPVLHPVSERVEAELGVVCKRLHN 80
PSR AIVV +SS+ P L+E PV HPV++ EAEL C L+N
Sbjct: 300 PSRSKNAIVVTKSSNNPWLIECHPVFHPVTKGFEAELCKFCIVLNN 163
Score = 25.8 bits (50), Expect(3) = 3e-063
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3 / +1
Query: 15 NLYHYDLPLAL 47
NLYHYDLP L
Sbjct: 97 NLYHYDLPEGL 129
Score = 23.5 bits (45), Expect(4) = 2e-024
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2 / -3
Query: 288 ERMRWCATRYGSVVELPPAGHP 223
E + CAT GSV E P P
Sbjct: 380 ESSKLCATM*GSVAEFPAVQFP 315
Score = 21.7 bits (41), Expect(4) = 2e-024
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2 / -3
Query: 576 WLMPT*SIEP 547
WL P *SIEP
Sbjct: 668 WLTPR*SIEP 639
>gb|DR094032.1|DR094032 STRR1_12_B03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_B03_A033 3', mRNA sequence
Length = 910
Score = 151 bits (325), Expect(3) = 1e-062
Identities = 59/117 (50%), Positives = 76/117 (64%)
Frame = +2 / -2
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY + YR+KYQ QKGKIGILLDFVWYEP ++S+
Sbjct: 654 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 475
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTSF 589
FH+GWFL PI +G+YP SM EI RLP F+ ++++M KGSIDY+G+N YT++
Sbjct: 474 RSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKKQSQMVKGSIDYLGVNQYTAY 304
Score = 101 bits (215), Expect(3) = 1e-062
Identities = 38/54 (70%), Positives = 44/54 (81%)
Frame = +2 / -2
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G L+ ++VE +A +AEFCF FGDRVK W TFNEPR VAALGYDNG+ APGRCS
Sbjct: 840 GLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 679
Score = 85.4 bits (180), Expect(2) = 6e-032
Identities = 41/110 (37%), Positives = 67/110 (60%)
Frame = -1 / +1
Query: 583 SVVVDANIVYRAFRHPGFFIAEQR*PVFGNLLHRVRVPSMYNGVKEPA*VEVPGSLCCSL 404
SV+V+A IVY F H G F+ + P N HR+R+ + N +++P+ +E+P SL SL
Sbjct: 310 SVLVNA*IVY*TFNHLGLFLCKLGQPCPNNFNHRIRIFPIGNRMEKPSNMEIP*SLSRSL 489
Query: 403 VRIAVAERFVPHEIQENSNLPLLVKLILVAVSPGRSCMRKDEMVCDKVRF 254
V + +R +P+++Q+ N LL LIL +++ S M K ++VC+ V F
Sbjct: 490 VLTGICKRLIPYKVQKYPNFSLLHGLILFSINLYSSSM*KQQIVCNNVGF 639
Score = 73.5 bits (154), Expect(4) = 3e-024
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = -2 / +2
Query: 486 IEYGYRPCTMGSRNQPRWKSLARCAAAWSALLSLKGSYHTKSRRIPIFPF 337
IE GY P +G RN P WKSL AA WS+L ++GSYHTKS+ IPIFPF
Sbjct: 407 IESGYFP*VIGWRNHPIWKSLDL*AAPWSSLEFVRGSYHTKSKSIPIFPF 556
Score = 72.1 bits (151), Expect(2) = 6e-032
Identities = 37/63 (58%), Positives = 39/63 (61%)
Frame = -2 / +2
Query: 222 EHLPGACKPLS*PRAATHLGSLKVNQFFTLSPNAWKQNSA*SANASTIFGLSQPRSVHGV 43
EHLPGA PLS*PRAAT GSL V Q+FTLSP KQNSA A +ST S P
Sbjct: 680 EHLPGAKMPLS*PRAATTRGSLNVIQYFTLSPKVLKQNSANFA*SSTTLEFSNPP*AVSS 859
Query: 42 PMG 34
P G
Sbjct: 860 PSG 868
Score = 50.6 bits (104), Expect(4) = 3e-024
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = -1 / +1
Query: 217 PSRCVQAIVVAQSSDAPRLVEGKPVLHPVSERVEAELGVVCKRLHN 80
PSR AIVV +SS+ P L+E PV HPV++ EAEL C L+N
Sbjct: 685 PSRSKNAIVVTKSSNNPWLIECHPVFHPVTKGFEAELCKFCIVLNN 822
Score = 25.8 bits (50), Expect(3) = 1e-062
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3 / -2
Query: 15 NLYHYDLPLAL 47
NLYHYDLP L
Sbjct: 888 NLYHYDLPEGL 856
Score = 23.5 bits (45), Expect(4) = 3e-024
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2 / +2
Query: 288 ERMRWCATRYGSVVELPPAGHP 223
E + CAT GSV E P P
Sbjct: 605 ESSKLCATM*GSVAEFPAVQFP 670
Score = 21.7 bits (41), Expect(4) = 3e-024
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2 / +2
Query: 576 WLMPT*SIEP 547
WL P *SIEP
Sbjct: 317 WLTPR*SIEP 346
>gb|DR013664.1|DR013664 HEAT1_20_F02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_F02_A029 5', mRNA sequence
Length = 726
Score = 138 bits (297), Expect(3) = 7e-059
Identities = 56/108 (51%), Positives = 68/108 (62%)
Frame = +2 / +2
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY + YR+KYQ QKGKIGILLDFVWYEP ++S+
Sbjct: 314 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 493
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDY 562
FH+GWFL PI +G+YP SM EI RLP F+ E+++M KGSIDY
Sbjct: 494 RSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKEQSQMVKGSIDY 637
Score = 101 bits (215), Expect(3) = 7e-059
Identities = 38/54 (70%), Positives = 44/54 (81%)
Frame = +2 / +2
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G L+ ++VE +A +AEFCF FGDRVK W TFNEPR VAALGYDNG+ APGRCS
Sbjct: 128 GLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 289
Score = 79.0 bits (166), Expect(2) = 5e-030
Identities = 37/103 (35%), Positives = 61/103 (59%)
Frame = -1 / -3
Query: 562 IVYRAFRHPGFFIAEQR*PVFGNLLHRVRVPSMYNGVKEPA*VEVPGSLCCSLVRIAVAE 383
IVY F H G F+ + P N HR+R+ + N +++P+ +E+P SL SLV + +
Sbjct: 637 IVY*TFNHLGLFLCKLGQPCPNNFHHRIRIFPIGNRMEKPSNMEIP*SLSRSLVLTGICK 458
Query: 382 RFVPHEIQENSNLPLLVKLILVAVSPGRSCMRKDEMVCDKVRF 254
R +P+++Q+ N LL LIL +++ S M K ++VC+ V F
Sbjct: 457 RLIPYKVQKYPNFSLLHGLILFSINLYSSSM*KQQIVCNNVGF 329
Score = 73.5 bits (154), Expect(3) = 9e-024
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = -2 / -1
Query: 486 IEYGYRPCTMGSRNQPRWKSLARCAAAWSALLSLKGSYHTKSRRIPIFPF 337
IE GY P +G RN P WKSL AA WS+L ++GSYHTKS+ IPIFPF
Sbjct: 561 IESGYFP*VIGWRNHPIWKSLDL*AAPWSSLEFVRGSYHTKSKSIPIFPF 412
Score = 72.1 bits (151), Expect(2) = 5e-030
Identities = 37/63 (58%), Positives = 39/63 (61%)
Frame = -2 / -1
Query: 222 EHLPGACKPLS*PRAATHLGSLKVNQFFTLSPNAWKQNSA*SANASTIFGLSQPRSVHGV 43
EHLPGA PLS*PRAAT GSL V Q+FTLSP KQNSA A +ST S P
Sbjct: 288 EHLPGAKMPLS*PRAATTRGSLNVIQYFTLSPKVLKQNSANFA*SSTTLEFSNPP*AVSS 109
Query: 42 PMG 34
P G
Sbjct: 108 PSG 100
Score = 50.6 bits (104), Expect(3) = 9e-024
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = -1 / -3
Query: 217 PSRCVQAIVVAQSSDAPRLVEGKPVLHPVSERVEAELGVVCKRLHN 80
PSR AIVV +SS+ P L+E PV HPV++ EAEL C L+N
Sbjct: 283 PSRSKNAIVVTKSSNNPWLIECHPVFHPVTKGFEAELCKFCIVLNN 146
Score = 25.8 bits (50), Expect(3) = 7e-059
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3 / +2
Query: 15 NLYHYDLPLAL 47
NLYHYDLP L
Sbjct: 80 NLYHYDLPEGL 112
Score = 23.5 bits (45), Expect(3) = 9e-024
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2 / -1
Query: 288 ERMRWCATRYGSVVELPPAGHP 223
E + CAT GSV E P P
Sbjct: 363 ESSKLCATM*GSVAEFPAVQFP 298
>gb|CO164857.1|CO164857 FLD1_50_F04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_50_F04_A029 5', mRNA sequence
Length = 873
Score = 141 bits (302), Expect(3) = 1e-054
Identities = 56/117 (47%), Positives = 69/117 (58%)
Frame = +2 / +1
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY YR Y+ Q G+IG+ LD +WYEP SDS
Sbjct: 343 GNSATEPYIVAHNVLLSHAKTVDIYRTNYKAKQGGRIGVALDVIWYEPMSDSPEDIAATQ 522
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTSF 589
F LGWF+DP+V G YP SM+E +RLPLFS EE+ KGS+D+VGINHYT++
Sbjct: 523 RAQDFQLGWFMDPLVFGDYPASMRERVGNRLPLFSSEESNRVKGSLDFVGINHYTTY 693
Score = 86.3 bits (182), Expect(3) = 1e-054
Identities = 33/50 (66%), Positives = 36/50 (72%)
Frame = +2 / +1
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAP 211
GWLS KI+E +A +AE CF FGDRVKNW TFNEP A GYD GL AP
Sbjct: 151 GWLSSKIIEDYAKFAETCFEKFGDRVKNWMTFNEPHTFAIQGYDIGLSAP 300
Score = 24.4 bits (47), Expect(3) = 1e-054
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3 / +1
Query: 18 LYHYDLPLALHEQTWAGLAQRL 83
LYH+DLP AL + L+ ++
Sbjct: 106 LYHWDLPQALEDAYKGWLSSKI 171
>gb|CO169436.1|CO169436 NDL1_7_C03.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_C03_A029 3', mRNA sequence
Length = 795
Score = 153 bits (329), Expect(2) = 4e-053
Identities = 60/117 (51%), Positives = 76/117 (64%)
Frame = +2 / -2
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY + YR+KYQ QKGKIGILLDFVWYEP ++S+
Sbjct: 665 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 486
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTSF 589
FH+GWFL PI +G+YP SM EI RLP F+ E+++M KGSIDY+G+N YT++
Sbjct: 485 RSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKEQSQMVKGSIDYLGVNQYTAY 315
Score = 85.4 bits (180), Expect(2) = 3e-027
Identities = 41/110 (37%), Positives = 67/110 (60%)
Frame = -1 / +3
Query: 583 SVVVDANIVYRAFRHPGFFIAEQR*PVFGNLLHRVRVPSMYNGVKEPA*VEVPGSLCCSL 404
SV+V+A IVY F H G F+ + P N HR+R+ + N +++P+ +E+P SL SL
Sbjct: 321 SVLVNA*IVY*TFNHLGLFLCKLGQPCPNNFHHRIRIFPIGNRMEKPSNMEIP*SLSRSL 500
Query: 403 VRIAVAERFVPHEIQENSNLPLLVKLILVAVSPGRSCMRKDEMVCDKVRF 254
V + +R +P+++Q+ N LL LIL +++ S M K ++VC+ V F
Sbjct: 501 VLTGICKRLIPYKVQKYPNFSLLHGLILFSINLYSSSM*KQQIVCNNVGF 650
Score = 74.8 bits (157), Expect(2) = 4e-053
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = +2 / -2
Query: 125 FGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
FGDRVK W TFNEPR VAALGYDNG+ APGRCS
Sbjct: 788 FGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 690
Score = 73.5 bits (154), Expect(4) = 2e-021
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = -2 / +1
Query: 486 IEYGYRPCTMGSRNQPRWKSLARCAAAWSALLSLKGSYHTKSRRIPIFPF 337
IE GY P +G RN P WKSL AA WS+L ++GSYHTKS+ IPIFPF
Sbjct: 418 IESGYFP*VIGWRNHPIWKSLDL*AAPWSSLEFVRGSYHTKSKSIPIFPF 567
Score = 56.1 bits (116), Expect(2) = 3e-027
Identities = 25/32 (78%), Positives = 26/32 (81%)
Frame = -2 / +1
Query: 222 EHLPGACKPLS*PRAATHLGSLKVNQFFTLSP 127
EHLPGA PLS*PRAAT GSL V Q+FTLSP
Sbjct: 691 EHLPGAKMPLS*PRAATTRGSLNVIQYFTLSP 786
Score = 40.0 bits (81), Expect(4) = 2e-021
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = -1 / +3
Query: 217 PSRCVQAIVVAQSSDAPRLVEGKPVLHPVSE 125
PSR AIVV +SS+ P L+E PV HPV++
Sbjct: 696 PSRSKNAIVVTKSSNNPWLIECHPVFHPVTK 788
Score = 23.5 bits (45), Expect(4) = 2e-021
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2 / +1
Query: 288 ERMRWCATRYGSVVELPPAGHP 223
E + CAT GSV E P P
Sbjct: 616 ESSKLCATM*GSVAEFPAVQFP 681
Score = 21.7 bits (41), Expect(4) = 2e-021
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2 / +1
Query: 576 WLMPT*SIEP 547
WL P *SIEP
Sbjct: 328 WLTPR*SIEP 357
>gb|DR054674.1|DR054674 RTCA1_18_G02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_G02_A029 5', mRNA sequence
Length = 784
Score = 110 bits (234), Expect(3) = 8e-051
Identities = 44/86 (51%), Positives = 52/86 (60%)
Frame = +2 / +1
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY + YR+KYQ QKGKIGILLDFVWYEP ++S+
Sbjct: 517 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 696
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEI 496
FH+GWFL PI +G+YP SM EI
Sbjct: 697 RSRDFHIGWFLHPITYGKYPDSMVEI 774
Score = 101 bits (215), Expect(3) = 8e-051
Identities = 38/54 (70%), Positives = 44/54 (81%)
Frame = +2 / +1
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G L+ ++VE +A +AEFCF FGDRVK W TFNEPR VAALGYDNG+ APGRCS
Sbjct: 331 GLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 492
Score = 73.5 bits (154), Expect(3) = 6e-030
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = -2 / -3
Query: 486 IEYGYRPCTMGSRNQPRWKSLARCAAAWSALLSLKGSYHTKSRRIPIFPF 337
IE GY P +G RN P WKSL AA WS+L ++GSYHTKS+ IPIFPF
Sbjct: 764 IESGYFP*VIGWRNHPIWKSLDL*AAPWSSLEFVRGSYHTKSKSIPIFPF 615
Score = 71.6 bits (150), Expect(3) = 6e-030
Identities = 35/54 (64%), Positives = 37/54 (68%)
Frame = -2 / -3
Query: 222 EHLPGACKPLS*PRAATHLGSLKVNQFFTLSPNAWKQNSA*SANASTIFGLSQP 61
EHLPGA PLS*PRAAT GSL V Q+FTLSP KQNSA A +ST S P
Sbjct: 491 EHLPGAKMPLS*PRAATTRGSLNVIQYFTLSPKVLKQNSANFA*SSTTLEFSNP 330
Score = 27.6 bits (54), Expect(3) = 8e-051
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +3 / +1
Query: 15 NLYHYDLPLAL 47
NLYHYDLP AL
Sbjct: 283 NLYHYDLPEAL 315
Score = 23.5 bits (45), Expect(3) = 6e-030
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2 / -3
Query: 288 ERMRWCATRYGSVVELPPAGHP 223
E + CAT GSV E P P
Sbjct: 566 ESSKLCATM*GSVAEFPAVQFP 501
>gb|CF390924.1|CF390924 RTDR3_2_H05.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_H05_A022 5', mRNA
sequence
Length = 685
Score = 122 bits (262), Expect(3) = 7e-048
Identities = 51/116 (43%), Positives = 65/116 (56%)
Frame = +2 / +3
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY + YR KYQ QKG IGI L W P+S+S
Sbjct: 231 GNSATEPYIVTHNMLLAHSAAVKLYRTKYQGKQKGSIGIALVVNWMVPYSNSLLDQEATQ 410
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
F +GWFLDP+ G+YP SM+ + RLPLFS EEA+ KGS D++G N+Y++
Sbjct: 411 RAIDFRIGWFLDPLTSGKYPDSMRSLVGARLPLFSSEEAKDLKGSFDFLGFNYYST 578
Score = 84.0 bits (177), Expect(3) = 7e-048
Identities = 33/54 (61%), Positives = 38/54 (70%)
Frame = +2 / +3
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G+ S ++VE F +AE CF AFGDRVK W T NEP + GYD GLHAPGRCS
Sbjct: 45 GFRSKRVVEDFGVFAEECFRAFGDRVKYWTTINEPLTFSLYGYDLGLHAPGRCS 206
Score = 22.1 bits (42), Expect(3) = 7e-048
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = +3 / +3
Query: 21 YHYDLPLALHEQ 56
YH+D+P AL ++
Sbjct: 3 YHWDMPQALEDE 38
>gb|DR094305.1|DR094305 STRR1_13_F01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_13_F01_A033 5', mRNA sequence
Length = 850
Score = 122 bits (261), Expect(3) = 4e-047
Identities = 51/116 (43%), Positives = 66/116 (56%)
Frame = +2 / +3
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY + YR KYQ QKG IGI+L W PFS S
Sbjct: 351 GNSATEPYIVTHNMLLAHRAVVKLYRTKYQGIQKGSIGIVLVVSWVVPFSKSKLDQRAAR 530
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
F +GWFLDP+V G+YP S++ + K RLP F+ +EA+ KGS D++G N+YT+
Sbjct: 531 RAFDFRIGWFLDPLVLGKYPDSVRRLVKSRLPRFTAKEAKELKGSFDFLGYNYYTT 698
Score = 82.2 bits (173), Expect(3) = 4e-047
Identities = 32/54 (59%), Positives = 39/54 (72%)
Frame = +2 / +3
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G+ S ++VE F+ +AE CF AFGDRVK W T NEP + GYD G+HAPGRCS
Sbjct: 165 GFRSKRVVEDFSIFAEECFRAFGDRVKYWVTVNEPLVFSLGGYDLGIHAPGRCS 326
Score = 22.1 bits (42), Expect(3) = 4e-047
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +3 / +3
Query: 18 LYHYDLPLALHEQ 56
L+H+D+P AL ++
Sbjct: 120 LFHWDMPQALEDE 158
>gb|DR091441.1|DR091441 RTAL1_21_D07.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_21_D07_A029 5', mRNA sequence
Length = 831
Score = 123 bits (263), Expect(3) = 9e-047
Identities = 51/116 (43%), Positives = 66/116 (56%)
Frame = +2 / +2
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY + YR KYQ QKG IGI+L W PFS S
Sbjct: 308 GNSATEPYIVTHNMLLAHSAVVKLYRTKYQGIQKGSIGIVLVLSWVVPFSKSKLDQRAAR 487
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
F +GWFLDP+V G+YP S++ + K RLP F+ +EA+ KGS D++G N+YT+
Sbjct: 488 RAFDFRIGWFLDPLVLGKYPDSVRRLVKSRLPRFTAKEAKELKGSFDFLGYNYYTT 655
Score = 79.9 bits (168), Expect(3) = 9e-047
Identities = 31/54 (57%), Positives = 38/54 (70%)
Frame = +2 / +2
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G+ S ++VE F+ +AE CF AFGDRVK W T NEP + GYD +HAPGRCS
Sbjct: 122 GFRSKRVVEDFSIFAEECFRAFGDRVKYWVTVNEPLVFSVGGYDLAIHAPGRCS 283
Score = 22.1 bits (42), Expect(3) = 9e-047
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +3 / +2
Query: 18 LYHYDLPLALHEQ 56
L+H+D+P AL ++
Sbjct: 77 LFHWDMPQALEDE 115
>gb|DR178543.1|DR178543 RTMNUT1_12_A07.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_12_A07_A029 5', mRNA sequence
Length = 701
Score = 123 bits (263), Expect(2) = 2e-046
Identities = 51/116 (43%), Positives = 66/116 (56%)
Frame = +2 / +1
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY + YR KYQ QKG IGI+L W PFS S
Sbjct: 223 GNSATEPYIVTHNMLLAHSAVVKLYRTKYQGIQKGSIGIVLVLSWVVPFSKSKLDQRAAR 402
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
F +GWFLDP+V G+YP S++ + K RLP F+ +EA+ KGS D++G N+YT+
Sbjct: 403 RAFDFRIGWFLDPLVLGKYPDSVRRLVKSRLPRFTAKEAKELKGSFDFLGYNYYTT 570
Score = 82.6 bits (174), Expect(2) = 2e-046
Identities = 32/54 (59%), Positives = 39/54 (72%)
Frame = +2 / +1
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G+ S ++VE F+ +AE CF AFGDRVK W T NEP + GYD G+HAPGRCS
Sbjct: 37 GFRSKRVVEDFSIFAEECFRAFGDRVKYWVTVNEPLVFSVGGYDLGIHAPGRCS 198
>gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA, complete cds
Length = 1909
Score = 118 bits (252), Expect(3) = 3e-046
Identities = 49/120 (40%), Positives = 62/120 (51%)
Frame = +2 / +3
Query: 227 CPAGGNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXX 406
C G S+ EPY +YR+KYQ Q G IG+++ WYEP +S
Sbjct: 837 CMTGNCSSAEPYLAAHHVLLAHASAVEKYREKYQKIQGGSIGLVISAPWYEPLENSPEER 1016
Query: 407 XXXXXXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
F+L WFLDPIV G YP M+E RLP S E + +GS DY+GINHYT+
Sbjct: 1017 SAVDRILSFNLRWFLDPIVFGDYPQEMRERLGSRLPSISSELSAKLRGSFDYMGINHYTT 1196
Score = 82.2 bits (173), Expect(3) = 3e-046
Identities = 31/54 (57%), Positives = 35/54 (64%)
Frame = +2 / +3
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
GWLSP+I+ F YAE CF AFGDRVK W T NEP LGY G+ P RC+
Sbjct: 654 GWLSPQIINDFEAYAEICFRAFGDRVKYWATVNEPNLFVPLGYTVGIFPPTRCA 815
Score = 23.1 bits (44), Expect(3) = 3e-046
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3 / +3
Query: 18 LYHYDLPLALHEQTWAGLAQRL 83
L+H+DLP AL + L+ ++
Sbjct: 609 LFHFDLPKALEDSYGGWLSPQI 674
>gb|BX681734.1|BX681734 BX681734 RS Pinus pinaster cDNA clone RS63F06, mRNA sequence
Length = 620
Score = 153 bits (329), Expect(2) = 5e-046
Identities = 59/117 (50%), Positives = 77/117 (65%)
Frame = +2 / +2
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY + YR+KYQ QKGKIGILLDFVWYEP ++S+
Sbjct: 95 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 274
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTSF 589
FH+GWFL PI +G+YP SM EI RLP+F+ E+++M KGSID++G+N YT++
Sbjct: 275 RSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPMFTKEQSQMVKGSIDFLGVNQYTAY 445
Score = 51.0 bits (105), Expect(2) = 5e-046
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +2 / +2
Query: 158 NEPRCVAALGYDNGLHAPGRCS 223
NEPR VAALGYDNG+ APGRCS
Sbjct: 5 NEPRVVAALGYDNGIFAPGRCS 70
>gb|AW056671.1|AW056671 ST54D07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST54D07, mRNA sequence
Length = 432
Score = 101 bits (215), Expect(2) = 6e-045
Identities = 38/54 (70%), Positives = 44/54 (81%)
Frame = +2 / +1
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G L+ ++VE +A +AEFCF FGDRVK W TFNEPR VAALGYDNG+ APGRCS
Sbjct: 4 GLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 165
Score = 99.6 bits (211), Expect(2) = 6e-045
Identities = 39/80 (48%), Positives = 46/80 (57%)
Frame = +2 / +1
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY + YR+KYQ QKGKIGILLDFVWYEP ++S+
Sbjct: 190 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 369
Query: 419 XXXXFHLGWFLDPIVHGRYP 478
FH+GWFL PI +YP
Sbjct: 370 RSRDFHIGWFLHPITXXKYP 429
Score = 71.6 bits (150), Expect(3) = 2e-028
Identities = 35/54 (64%), Positives = 37/54 (68%)
Frame = -2 / -2
Query: 222 EHLPGACKPLS*PRAATHLGSLKVNQFFTLSPNAWKQNSA*SANASTIFGLSQP 61
EHLPGA PLS*PRAAT GSL V Q+FTLSP KQNSA A +ST S P
Sbjct: 164 EHLPGAKMPLS*PRAATTRGSLNVIQYFTLSPKVLKQNSANFA*SSTTLEFSNP 3
Score = 68.0 bits (142), Expect(3) = 2e-028
Identities = 28/47 (59%), Positives = 33/47 (70%)
Frame = -2 / -2
Query: 477 GYRPCTMGSRNQPRWKSLARCAAAWSALLSLKGSYHTKSRRIPIFPF 337
GY +G RN P WKSL AA WS+L ++GSYHTKS+ IPIFPF
Sbjct: 428 GYXXXVIGWRNHPIWKSLDL*AAPWSSLEFVRGSYHTKSKSIPIFPF 288
Score = 23.5 bits (45), Expect(3) = 2e-028
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2 / -2
Query: 288 ERMRWCATRYGSVVELPPAGHP 223
E + CAT GSV E P P
Sbjct: 239 ESSKLCATM*GSVAEFPAVQFP 174
>gb|CX651881.1|CX651881 COLD1_55_A04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_55_A04_A029 5', mRNA sequence
Length = 533
Score = 110 bits (234), Expect(3) = 1e-044
Identities = 39/83 (46%), Positives = 57/83 (68%)
Frame = +2 / +2
Query: 335 QKGKIGILLDFVWYEPFSDSNXXXXXXXXXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLP 514
Q G IGI LD +W+EP +D + F LGWF+DP+ G YP SM+++ DRLP
Sbjct: 284 QGGSIGITLDSMWFEPITDLSEDQDAAQRALDFQLGWFMDPLYFGDYPASMRQLVGDRLP 463
Query: 515 LFSDEEARMAKGSIDYVGINHYT 583
+FS++++++ +GS D+VGINHYT
Sbjct: 464 VFSNDQSKLLRGSFDFVGINHYT 532
Score = 85.4 bits (180), Expect(3) = 1e-044
Identities = 32/49 (65%), Positives = 38/49 (77%)
Frame = +2 / +2
Query: 77 KIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
+I+ FA YAE CF AFGDRVK+W TFNEPR ++ GYD G+ APGRCS
Sbjct: 17 QIIADFARYAEACFQAFGDRVKHWITFNEPRGISIHGYDIGIQAPGRCS 163
Score = 23.1 bits (44), Expect(3) = 1e-044
Identities = 9/30 (30%), Positives = 13/30 (43%)
Frame = +2 / +2
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQ 328
GNS+TEPY YR +++
Sbjct: 191 GNSSTEPYIVAHNLLLSHAAAVDIYRQQFK 280
>gb|CF392740.1|CF392740 RTDR3_5_G10.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_5_G10_A022 5', mRNA
sequence
Length = 741
Score = 118 bits (253), Expect(2) = 2e-044
Identities = 50/116 (43%), Positives = 64/116 (55%)
Frame = +2 / +2
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY + YR KYQ QKG IGI L W P+S+S
Sbjct: 173 GNSATEPYIVTHNMLLAHSAAVKLYRTKYQGKQKGSIGIALVVNWMVPYSNSLLDQEATQ 352
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
F +GWFL P+ G+YP SM+ + RLPLFS EEA+ KGS D++G N+Y++
Sbjct: 353 RAIDFRIGWFLYPLTSGKYPDSMRSLVGARLPLFSSEEAKDLKGSFDFLGFNYYST 520
Score = 80.3 bits (169), Expect(2) = 2e-044
Identities = 31/49 (63%), Positives = 35/49 (71%)
Frame = +2 / +2
Query: 77 KIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
++VE F +AE CF AFGDRVK W T NEP + GYD GLHAPGRCS
Sbjct: 2 RVVEDFGVFAEECFRAFGDRVKYWTTINEPLTFSLYGYDLGLHAPGRCS 148
>gb|CF666831.1|CF666831 RTCNT1_26_A11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_26_A11_A029 5', mRNA sequence
Length = 860
Score = 101 bits (215), Expect(3) = 2e-038
Identities = 38/54 (70%), Positives = 44/54 (81%)
Frame = +2 / +1
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G L+ ++VE +A +AEFCF FGDRVK W TFNEPR VAALGYDNG+ APGRCS
Sbjct: 520 GLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 681
Score = 70.3 bits (147), Expect(3) = 2e-038
Identities = 28/51 (54%), Positives = 32/51 (62%)
Frame = +2 / +1
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSD 391
GNS TEPY + YR+KYQ QKGKIGILLDFVWYEP ++
Sbjct: 706 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTN 858
Score = 25.8 bits (50), Expect(3) = 2e-038
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3 / +1
Query: 15 NLYHYDLPLAL 47
NLYHYDLP L
Sbjct: 472 NLYHYDLPEGL 504
>gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F07_A029 5', mRNA sequence
Length = 932
Score = 153 bits (329), Expect(2) = 1e-037
Identities = 60/117 (51%), Positives = 76/117 (64%)
Frame = +2 / +1
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY + YR+KYQ QKGKIGILLDFVWYEP ++S+
Sbjct: 55 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 234
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTSF 589
FH+GWFL PI +G+YP SM EI RLP F+ E+++M KGSIDY+G+N YT++
Sbjct: 235 RSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKEQSQMVKGSIDYLGVNQYTAY 405
Score = 22.6 bits (43), Expect(2) = 1e-037
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +1
Query: 194 NGLHAPGRCS 223
+G+ APGRCS
Sbjct: 1 HGIFAPGRCS 30
>gb|DR388562.1|DR388562 RTHG1_29_B07.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_29_B07_A029 3', mRNA sequence
Length = 692
Score = 112 bits (239), Expect(2) = 4e-037
Identities = 43/116 (37%), Positives = 66/116 (56%)
Frame = +2 / +1
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS+TEPY + YR +YQ Q+G IGI++ W EP +++
Sbjct: 166 GNSSTEPYIAAHNILRAHASAVQLYRKEYQADQEGLIGIVMACAWREPLLNNSQDISAVQ 345
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
F +GW+LDPIV G YP SMQE+ RLP+ + + + +GS D++G+N+Y++
Sbjct: 346 RLLDFSIGWYLDPIVFGEYPTSMQELVGTRLPIITLDLSEKLRGSYDFIGVNYYST 513
Score = 62.5 bits (130), Expect(2) = 4e-037
Identities = 24/47 (51%), Positives = 28/47 (59%)
Frame = +2 / +1
Query: 83 VEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
++ + YAE CF FG RVK W TFNEP GYD G + P RCS
Sbjct: 1 IDDYTLYAEACFKNFGGRVKYWSTFNEPNIFVPEGYDAGKYPPARCS 141
>gb|DR743237.1|DR743237 RTCU1_14_B08.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_14_B08_A029 5', mRNA sequence
Length = 711
Score = 104 bits (222), Expect(2) = 7e-037
Identities = 43/114 (37%), Positives = 59/114 (51%)
Frame = +2 / +2
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNST EPY YR YQ QKG IG+++ P ++ +
Sbjct: 188 GNSTVEPYIVGHHVLLSHIAAVELYRKNYQAKQKGWIGLVILVNRMIPLTNKSTDVAATQ 367
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHY 580
F +GWFLDP V G YP SM+ I RLP F+ E+ + +GS+D++G+NHY
Sbjct: 368 RANDFKVGWFLDPFVSGDYPGSMRNIVGSRLPSFTKEQTQKLQGSLDFIGVNHY 529
Score = 69.3 bits (145), Expect(2) = 7e-037
Identities = 27/46 (58%), Positives = 28/46 (60%)
Frame = +2 / +2
Query: 86 EAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
E F YA+ CF FGDRVK W TFNEP A GYD G P RCS
Sbjct: 26 EDFKGYADVCFREFGDRVKYWSTFNEPNIFAIAGYDQGFFPP*RCS 163
>gb|CR394381.1|CR394381 CR394381 RN Pinus pinaster cDNA clone RN78E02, mRNA sequence
Length = 461
Score = 100 bits (214), Expect(2) = 7e-037
Identities = 43/98 (43%), Positives = 52/98 (53%)
Frame = +2 / +3
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY + YR KYQ QKG IGI+L W PFS S
Sbjct: 168 GNSATEPYIVTHNMLLAHSAVVKLYRTKYQGIQKGSIGIVLVVSWMVPFSKSKLDQRAAR 347
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEE 532
F +GWFLDP+V G+YP S+ + K RLP F+D+E
Sbjct: 348 RAFDFRIGWFLDPLVLGKYPDSVTRLVKSRLPQFTDKE 461
Score = 73.0 bits (153), Expect(2) = 7e-037
Identities = 28/44 (63%), Positives = 32/44 (72%)
Frame = +2 / +3
Query: 92 FADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
F+ +AE CF AFGDRVK W T NEP + GYD G+HAPGRCS
Sbjct: 12 FSIFAEECFRAFGDRVKYWVTVNEPLVFSVGGYDLGVHAPGRCS 143
>gb|CX652380.1|CX652380 COLD1_58_E05.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_58_E05_A029 5', mRNA sequence
Length = 588
Score = 153 bits (329), Expect = 9e-037
Identities = 60/117 (51%), Positives = 76/117 (64%)
Frame = +2 / +2
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY + YR+KYQ QKGKIGILLDFVWYEP ++S+
Sbjct: 23 GNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQ 202
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTSF 589
FH+GWFL PI +G+YP SM EI RLP F+ E+++M KGSIDY+G+N YT++
Sbjct: 203 RSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKEQSQMVKGSIDYLGVNQYTAY 373
>gb|DR744730.1|DR744730 RTCU1_24_B09.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_B09_A029 5', mRNA sequence
Length = 742
Score = 65.7 bits (137), Expect(3) = 1e-036
Identities = 24/47 (51%), Positives = 36/47 (76%)
Frame = +2 / +3
Query: 446 FLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
FLDP+V G+YP S++ + K RLP F+ +EA+ KGS D++G N+YT+
Sbjct: 378 FLDPLVLGKYPDSVRRLVKSRLPRFTAKEAKELKGSFDFLGYNYYTT 518
Score = 63.4 bits (132), Expect(3) = 1e-036
Identities = 24/36 (66%), Positives = 26/36 (72%)
Frame = +2 / +3
Query: 116 FHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
F AFGDRVK W T NEP + GYD G+HAPGRCS
Sbjct: 3 FRAFGDRVKYWVTVNEPLVFSVGGYDLGIHAPGRCS 110
Score = 62.0 bits (129), Expect(3) = 1e-036
Identities = 27/70 (38%), Positives = 31/70 (44%)
Frame = +2 / +3
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY + YR KYQ QKG IGI+L W PFS S
Sbjct: 135 GNSATEPYIVTHNMLLAHSAVVKLYRTKYQGIQKGSIGIVLVLSWVVPFSKSKLDQRAAR 314
Query: 419 XXXXFHLGWF 448
F +GW+
Sbjct: 315 RAFDFRIGWY 344
>gb|CF671986.1|CF671986 RTCNT1_60_C07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_60_C07_A029 5', mRNA sequence
Length = 792
Score = 82.2 bits (173), Expect(3) = 8e-033
Identities = 31/54 (57%), Positives = 35/54 (64%)
Frame = +2 / +3
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
GWLSP+I+ F YAE CF AFGDRVK W T NEP LGY G+ P RC+
Sbjct: 363 GWLSPQIINDFEAYAEICFRAFGDRVKYWATVNEPNLFVPLGYTVGIFPPTRCA 524
Score = 73.0 bits (153), Expect(3) = 8e-033
Identities = 30/81 (37%), Positives = 38/81 (46%)
Frame = +2 / +3
Query: 227 CPAGGNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXX 406
C G S+ EPY +YR+KYQ Q G IG+++ WYEP +S
Sbjct: 546 CITGNCSSAEPYLAAHHVLLAHASAVEKYREKYQKIQGGSIGLVISAPWYEPLENSPEER 725
Query: 407 XXXXXXXXFHLGWFLDPIVHG 469
F+L WFLDPIV G
Sbjct: 726 LAVDRILSFNLRWFLDPIVFG 788
Score = 23.1 bits (44), Expect(3) = 8e-033
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3 / +3
Query: 18 LYHYDLPLALHEQTWAGLAQRL 83
L+H+DLP AL + L+ ++
Sbjct: 318 LFHFDLPKALEDSYGGWLSPQI 383
>gb|CO199490.1|CO199490 GEO2_1_C06.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_1_C06_A032 5', mRNA sequence
Length = 791
Score = 83.5 bits (176), Expect(2) = 3e-032
Identities = 36/83 (43%), Positives = 42/83 (50%)
Frame = +2 / +3
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY + YR KYQ QKG IGI+L W PFS S
Sbjct: 543 GNSATEPYIVTHNMLLAHSAVVKLYRTKYQGIQKGSIGIVLVLSWVVPFSKSKLDQRAAR 722
Query: 419 XXXXFHLGWFLDPIVHGRYPYSM 487
F +GWFLDP+V G+YP S+
Sbjct: 723 RAFDFRIGWFLDPLVLGKYPDSV 791
Score = 74.8 bits (157), Expect(2) = 3e-032
Identities = 29/46 (63%), Positives = 33/46 (71%)
Frame = +2 / +3
Query: 86 EAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
E F+ +AE CF AFGDRVK W T NEP + GYD G+HAPGRCS
Sbjct: 381 EDFSIFAEECFRAFGDRVKYWVTVNEPLVFSVGGYDLGIHAPGRCS 518
>gb|DR094103.1|DR094103 STRR1_12_B03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_B03_A033 5', mRNA sequence
Length = 864
Score = 138 bits (295), Expect = 4e-032
Identities = 52/93 (55%), Positives = 68/93 (73%)
Frame = +2 / -1
Query: 311 YRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXXXXXXFHLGWFLDPIVHGRYPYSMQ 490
YR+KYQ QKGKIGILLDFVWYEP ++S+ FH+GWFL PI +G+YP SM
Sbjct: 822 YREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPDSMV 643
Query: 491 EIAKDRLPLFSDEEARMAKGSIDYVGINHYTSF 589
EI RLP F+ ++++M KGSIDY+G+N YT++
Sbjct: 642 EIVGTRLPKFTKKQSQMVKGSIDYLGVNQYTAY 544
>gb|CO174896.1|CO174896 NDL1_47_A06.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_47_A06_A029 3', mRNA sequence
Length = 596
Score = 83.1 bits (175), Expect(4) = 1e-031
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +2 / -1
Query: 92 FADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
FA YAE CF AFGDRVK+W TFNEPR ++ GYD G+ APGRCS
Sbjct: 407 FARYAEACFQAFGDRVKHWITFNEPRGISIHGYDIGIQAPGRCS 276
Score = 61.6 bits (128), Expect(4) = 1e-031
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = +2 / -1
Query: 335 QKGKIGILLDFVWYEPFSDSNXXXXXXXXXXXFHLGWFLDPIVHGRYPYSM 487
Q G IGI LD +W+EP +D + F LGWF+DP+ G YP SM
Sbjct: 155 QGGSIGITLDSMWFEPITDLSEDQDAAQRALDFQLGWFMDPLYFGDYPASM 3
Score = 24.0 bits (46), Expect(4) = 1e-031
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3 / -2
Query: 18 LYHYDLPLALHE 53
LYH+DLP AL +
Sbjct: 460 LYHWDLPQALED 425
Score = 23.1 bits (44), Expect(4) = 1e-031
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = +1 / -3
Query: 238 RQLHHGTVPCRTPSHPFSCSCGQAIPRQV 324
R+ HGTV + +C C + +P +
Sbjct: 249 REFFHGTVHRGSQPASVTCCCSRYLPATI 163
>gb|DR164307.1|DR164307 RTFE1_48_D09.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_48_D09_A029 3', mRNA sequence
Length = 868
Score = 134 bits (287), Expect = 6e-031
Identities = 51/91 (56%), Positives = 66/91 (72%)
Frame = +2 / +3
Query: 317 DKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXXXXXXFHLGWFLDPIVHGRYPYSMQEI 496
+KYQ QKGKIGILLDFVWYEP ++S+ FH+GWFL PI +G+YP SM EI
Sbjct: 3 EKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEI 182
Query: 497 AKDRLPLFSDEEARMAKGSIDYVGINHYTSF 589
RLP F+ E+++M KGSIDY+G+N YT++
Sbjct: 183 VGTRLPKFTKEQSQMVKGSIDYLGVNQYTAY 275
>gb|DR385449.1|DR385449 RTHG1_8_F01.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_F01_A029 5', mRNA sequence
Length = 860
Score = 63.4 bits (132), Expect(4) = 7e-031
Identities = 23/47 (48%), Positives = 35/47 (74%)
Frame = +2 / +3
Query: 446 FLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
FLDP+V G+YP ++ + K RLP F+ +EA+ KGS D++G N+YT+
Sbjct: 684 FLDPLVLGKYPDPVRRLVKSRLPRFTAKEAKELKGSFDFLGYNYYTT 824
Score = 56.5 bits (117), Expect(4) = 7e-031
Identities = 22/36 (61%), Positives = 24/36 (66%)
Frame = +2 / +3
Query: 116 FHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
F FGDRVK W T N P + GYD G+HAPGRCS
Sbjct: 108 FEPFGDRVKYWVTVN*PLVFSLGGYDLGIHAPGRCS 215
Score = 40.5 bits (82), Expect(4) = 7e-031
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2 / +3
Query: 311 YRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXXXXXXFHLGWF 448
+ +K Q QKG IGI+L W PFS S F +GW+
Sbjct: 414 WENKLQGIQKGSIGIVLVVSWVVPFSKSKLDQRAARRAFDFRIGWY 551
Score = 31.3 bits (62), Expect(4) = 7e-031
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +2 / +3
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQL 331
GNS TEPY R YR KYQ+
Sbjct: 240 GNSATEPYIVTHNMLLAHSAVVRLYRTKYQV 332
>gb|CO362034.1|CO362034 NDL2_8_E08.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E08_A029 5', mRNA sequence
Length = 729
Score = 116 bits (249), Expect(3) = 9e-031
Identities = 46/117 (39%), Positives = 67/117 (57%)
Frame = +2 / +1
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
G+S TEPY + Y+ KYQ QKG IGI+L W PFS+S+
Sbjct: 373 GDSATEPYIVGHNMLLAHSAAVKIYKTKYQGKQKGSIGIVLTASWMVPFSESSQDQMATQ 552
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTSF 589
F +GW L+P+ G+YP SM+++ RLP F+ +EAR KGS D++G N+Y+++
Sbjct: 553 RAIDFRIGWILEPLTSGKYPDSMRKLVGARLPRFTSQEARELKGSFDFLGYNYYSTY 723
Score = 28.1 bits (55), Expect(3) = 9e-031
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +2 / +1
Query: 185 GYDNGLHAPGRCS 223
GYD G APGRCS
Sbjct: 310 GYDVGADAPGRCS 348
Score = 26.3 bits (51), Expect(3) = 9e-031
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3 / +2
Query: 18 LYHYDLPLALHEQTWAGLAQRL 83
L+H+DLP AL ++ L+Q++
Sbjct: 224 LFHWDLPQALEDEYMGFLSQKV 289
>gb|DR019596.1|DR019596 STRS1_31_D05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_D05_A034 3', mRNA sequence
Length = 865
Score = 133 bits (285), Expect = 1e-030
Identities = 51/90 (56%), Positives = 65/90 (72%)
Frame = +2 / -1
Query: 320 KYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXXXXXXFHLGWFLDPIVHGRYPYSMQEIA 499
KYQ QKGKIGILLDFVWYEP ++S+ FH+GWFL PI +G+YP SM EI
Sbjct: 865 KYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIV 686
Query: 500 KDRLPLFSDEEARMAKGSIDYVGINHYTSF 589
RLP F+ E+++M KGSIDY+G+N YT++
Sbjct: 685 GTRLPKFTKEQSQMVKGSIDYLGVNQYTAY 596
>gb|DR052378.1|DR052378 RTCA1_4_F07.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F07_A029 3', mRNA sequence
Length = 865
Score = 127 bits (273), Expect = 5e-029
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = +2 / +1
Query: 335 QKGKIGILLDFVWYEPFSDSNXXXXXXXXXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLP 514
QKGKIGILLDFVWYEP ++S+ FH+GWFL PI +G+YP SM EI RLP
Sbjct: 10 QKGKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIVGTRLP 189
Query: 515 LFSDEEARMAKGSIDYVGINHYTSF 589
F+ E+++M KGSIDY+G+N YT++
Sbjct: 190 KFTKEQSQMVKGSIDYLGVNQYTAY 264
>gb|CF477776.1|CF477776 RTWW3_9_B03.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_9_B03_A022 5', mRNA sequence
Length = 735
Score = 101 bits (215), Expect(3) = 7e-027
Identities = 38/54 (70%), Positives = 44/54 (81%)
Frame = +2 / +2
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G L+ ++VE +A +AEFCF FGDRVK W TFNEPR VAALGYDNG+ APGRCS
Sbjct: 458 GLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 619
Score = 30.9 bits (61), Expect(3) = 7e-027
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2 / +2
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQ 328
GNS TEPY + YR+KYQ
Sbjct: 644 GNSATEPYIVAHNLLLSHATAVKIYREKYQ 733
Score = 25.8 bits (50), Expect(3) = 7e-027
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3 / +2
Query: 15 NLYHYDLPLAL 47
NLYHYDLP L
Sbjct: 410 NLYHYDLPEGL 442
>gb|CO162287.1|CO162287 FLD1_34_H05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_H05_A029 3', mRNA sequence
Length = 718
Score = 118 bits (253), Expect = 3e-026
Identities = 49/120 (40%), Positives = 62/120 (51%)
Frame = +2 / -3
Query: 227 CPAGGNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXX 406
C G S+ EPY +YR+KYQ Q G IG+++ WYEP +S
Sbjct: 710 CITGNCSSAEPYLAAHHVLLAHASAVEKYREKYQKFQGGSIGLVISAPWYEPLENSPEER 531
Query: 407 XXXXXXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
F+L WFLDPIV G YP M+E RLP S E + +GS DY+GINHYT+
Sbjct: 530 SAVDRILSFNLRWFLDPIVFGDYPQEMRERLGSRLPSISSELSAKLRGSFDYMGINHYTT 351
>gb|CX649586.1|CX649586 COLD1_36_E07.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_36_E07_A029 3', mRNA sequence
Length = 753
Score = 118 bits (253), Expect = 3e-026
Identities = 49/120 (40%), Positives = 62/120 (51%)
Frame = +2 / -3
Query: 227 CPAGGNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXX 406
C G S+ EPY +YR+KYQ Q G IG+++ WYEP +S
Sbjct: 688 CITGNCSSAEPYLAAHHVLLAHASAVEKYREKYQKFQGGSIGLVISAPWYEPLENSPEER 509
Query: 407 XXXXXXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
F+L WFLDPIV G YP M+E RLP S E + +GS DY+GINHYT+
Sbjct: 508 SAVDRILSFNLRWFLDPIVFGDYPQEMRERLGSRLPSISSELSAKLRGSFDYMGINHYTT 329
>gb|DR014719.1|DR014719 HEAT1_51_E12.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_E12_A029 3', mRNA sequence
Length = 838
Score = 82.2 bits (173), Expect(3) = 4e-026
Identities = 31/54 (57%), Positives = 35/54 (64%)
Frame = +2 / -3
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
GWLSP+I+ F YAE CF AFGDRVK W T NEP LGY G+ P RC+
Sbjct: 341 GWLSPQIINDFEAYAEICFRAFGDRVKYWATVNEPNLFVPLGYTVGIFPPTRCA 180
Score = 50.1 bits (103), Expect(3) = 4e-026
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +2 / -3
Query: 227 CPAGGNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEP 382
C G S+ EPY +YR+KYQ Q G IG+++ WYEP
Sbjct: 158 CITGNCSSAEPYLAAHHVLLAHASAVEKYREKYQKIQGGSIGLVISAPWYEP 3
Score = 23.1 bits (44), Expect(3) = 4e-026
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3 / -3
Query: 18 LYHYDLPLALHEQTWAGLAQRL 83
L+H+DLP AL + L+ ++
Sbjct: 386 LFHFDLPKALEDSYGGWLSPQI 321
>gb|BX680137.1|BX680137 BX680137 RS Pinus pinaster cDNA clone RS39F11, mRNA sequence
Length = 388
Score = 101 bits (215), Expect(3) = 5e-026
Identities = 38/54 (70%), Positives = 44/54 (81%)
Frame = +2 / +1
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G L+ ++VE +A +AEFCF FGDRVK W TFNEPR VAALGYDNG+ APGRCS
Sbjct: 118 GLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 279
Score = 27.6 bits (54), Expect(3) = 5e-026
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +3 / +1
Query: 15 NLYHYDLPLAL 47
NLYHYDLP AL
Sbjct: 70 NLYHYDLPEAL 102
Score = 25.4 bits (49), Expect(3) = 5e-026
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +2 / +1
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDK 322
GNS TEPY + YR+K
Sbjct: 304 GNSATEPYIVAHNLLLSHATAVKIYREK 387
>gb|DR690593.1|DR690593 EST1080679 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACW86 3' end, mRNA sequence
Length = 754
Score = 114 bits (243), Expect = 6e-025
Identities = 48/116 (41%), Positives = 63/116 (54%)
Frame = +2 / +3
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
G+S+TEPY YR K+Q Q G IGI +D W EPF+D+
Sbjct: 33 GDSSTEPYLAAHNQLLAHAAAVDIYRKKFQDKQGGVIGITVDGEWAEPFTDAEGDKEAAQ 212
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
F GWFLDPI G YP M++ DRLP FS +E + +GS D++G+NHYT+
Sbjct: 213 RRREFQFGWFLDPIYFGDYPAIMRKKLGDRLPQFSPDEVAVLRGSSDFLGLNHYTT 380
>gb|DT636173.1|DT636173 EST1151104 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGO78 3' end, mRNA sequence
Length = 706
Score = 114 bits (243), Expect = 6e-025
Identities = 48/116 (41%), Positives = 63/116 (54%)
Frame = +2 / +2
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
G+S+TEPY YR K+Q Q G IGI +D W EPF+D+
Sbjct: 41 GDSSTEPYLAAHNQLLAHAAAVDIYRKKFQDKQGGVIGITVDGEWAEPFTDAEGDKEAAQ 220
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
F GWFLDPI G YP M++ DRLP FS +E + +GS D++G+NHYT+
Sbjct: 221 RRREFQFGWFLDPIYFGDYPAIMRKKLGDRLPQFSPDEVAVLRGSSDFLGLNHYTT 388
>gb|DR091066.1|DR091066 RTAL1_19_E03.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_E03_A029 3', mRNA sequence
Length = 774
Score = 101 bits (215), Expect(2) = 6e-023
Identities = 38/54 (70%), Positives = 44/54 (81%)
Frame = +2 / -2
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G L+ ++VE +A +AEFCF FGDRVK W TFNEPR VAALGYDNG+ APGRCS
Sbjct: 251 GLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 90
Score = 25.8 bits (50), Expect(2) = 6e-023
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3 / -2
Query: 15 NLYHYDLPLAL 47
NLYHYDLP L
Sbjct: 299 NLYHYDLPEGL 267
>gb|DR081573.1|DR081573 RTFEPL1_30_D11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_30_D11_A029 5', mRNA sequence
Length = 678
Score = 101 bits (215), Expect(2) = 6e-023
Identities = 38/54 (70%), Positives = 44/54 (81%)
Frame = +2 / +3
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G L+ ++VE +A +AEFCF FGDRVK W TFNEPR VAALGYDNG+ APGRCS
Sbjct: 498 GLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 659
Score = 25.8 bits (50), Expect(2) = 6e-023
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3 / +3
Query: 15 NLYHYDLPLAL 47
NLYHYDLP L
Sbjct: 450 NLYHYDLPEGL 482
>gb|DR024643.1|DR024643 STRS1_66_A03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_A03_A034 5', mRNA sequence
Length = 448
Score = 101 bits (215), Expect(2) = 6e-023
Identities = 38/54 (70%), Positives = 44/54 (81%)
Frame = +2 / +3
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G L+ ++VE +A +AEFCF FGDRVK W TFNEPR VAALGYDNG+ APGRCS
Sbjct: 213 GLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCS 374
Score = 25.8 bits (50), Expect(2) = 6e-023
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3 / +3
Query: 15 NLYHYDLPLAL 47
NLYHYDLP L
Sbjct: 165 NLYHYDLPEGL 197
>gb|DR387566.1|DR387566 RTHG1_22_E08.g2_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_22_E08_A029 5', mRNA sequence
Length = 607
Score = 106 bits (226), Expect = 1e-022
Identities = 45/112 (40%), Positives = 59/112 (52%)
Frame = +2 / -1
Query: 251 TEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXXXXXX 430
TEPY +R K+Q Q G IGI +D W EPF+D+
Sbjct: 607 TEPYLVAHNQLLAHAAAVDIFRKKFQDKQGGVIGITVDGEWAEPFTDAEGDKEAAQRRRE 428
Query: 431 FHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
F GWFLDPI G YP M++ DRLP FS +E + +GS D++G+NHYT+
Sbjct: 427 FQFGWFLDPIYFGDYPAIMRKKLGDRLPQFSPDEVAVLRGSSDFLGLNHYTT 272
>gb|DR081852.1|DR081852 RTFEPL1_32_F12.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_32_F12_A029 5', mRNA sequence
Length = 648
Score = 102 bits (217), Expect = 3e-021
Identities = 39/92 (42%), Positives = 57/92 (61%)
Frame = +2 / +1
Query: 311 YRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXXXXXXFHLGWFLDPIVHGRYPYSMQ 490
YR KY++ QKG IG+ L W P+S S F LGWF+DP+ G YP++M+
Sbjct: 82 YRSKYKVEQKGCIGLTLVCNWTYPYSSSQDDQNAAQRAVDFMLGWFIDPVTSGDYPFTMR 261
Query: 491 EIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
+ DRL F+++E+ KGS D++G+N+YTS
Sbjct: 262 DRLGDRLLKFTEQESEQLKGSFDFLGMNYYTS 357
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 369,871,206
Number of Sequences: 355925
Number of extensions: 5712947
Number of successful extensions: 64248
Number of sequences better than 1.0e-020: 47
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7978214790
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)