TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713139.2.1
(487 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ654594.1|BQ654594 NXRV082_F11_F NXRV (Nsf Xylem Root w... 146 8e-035
gb|BQ701947.1|BQ701947 NXSI_122_E05_F NXSI (Nsf Xylem Side ... 146 8e-035
gb|DR017543.1|DR017543 STRS1_17_A06.b1_A034 Shoot tip pitch... 146 8e-035
gb|DR017618.1|DR017618 STRS1_17_A06.g1_A034 Shoot tip pitch... 146 8e-035
gb|DR018115.1|DR018115 STRS1_20_C07.g1_A034 Shoot tip pitch... 146 8e-035
gb|DR024764.1|DR024764 STRS1_67_G11.b1_A034 Shoot tip pitch... 146 8e-035
gb|DR053888.1|DR053888 RTCA1_14_A01.b1_A029 Roots minus cal... 146 8e-035
gb|DR053962.1|DR053962 RTCA1_14_A01.g1_A029 Roots minus cal... 146 8e-035
gb|DR099712.1|DR099712 STRR1_58_A03.b1_A033 Stem Response R... 146 8e-035
gb|DR100066.1|DR100066 STRR1_61_H02.b1_A033 Stem Response R... 146 8e-035
gb|DR180220.1|DR180220 RTMNUT1_27_E10.b1_A029 Roots minus m... 146 8e-035
gb|BE431388.1|BE431388 NXNV_181_F06_F Nsf Xylem Normal wood... 144 5e-034
gb|BQ699235.1|BQ699235 NXRV121_B08_F NXRV (Nsf Xylem Root w... 144 5e-034
gb|DR024846.1|DR024846 STRS1_67_G11.g1_A034 Shoot tip pitch... 144 5e-034
gb|DR109689.1|DR109689 RTS1_4_B09.b1_A029 Roots minus sulfu... 143 1e-033
gb|BQ695622.1|BQ695622 NXPV_030_E10_F NXPV (Nsf Xylem Plani... 142 1e-033
gb|BX249566.1|BX249566 BX249566 Pinus pinaster differenciat... 142 2e-033
gb|DR098956.1|DR098956 STRR1_49_C11.b1_A033 Stem Response R... 142 2e-033
gb|DR682506.1|DR682506 EST1072581 Normalized pine embryo li... 142 2e-033
gb|BQ696271.1|BQ696271 NXPV_037_D02_F NXPV (Nsf Xylem Plani... 138 2e-032
gb|CF390890.1|CF390890 RTDR3_2_G07.g1_A022 Loblolly pine ro... 138 2e-032
gb|CF391306.1|CF391306 RTDR3_1_G02.b1_A022 Loblolly pine ro... 138 2e-032
gb|CF391347.1|CF391347 RTDR3_1_F02.b1_A022 Loblolly pine ro... 138 2e-032
gb|CO200244.1|CO200244 GEO2_6_F09.b1_A032 Root gravitropism... 138 2e-032
gb|CO200327.1|CO200327 GEO2_6_F09.g1_A032 Root gravitropism... 138 2e-032
gb|CV138136.1|CV138136 EST849345 Sequencing ESTs from loblo... 138 2e-032
gb|DN454302.1|DN454302 EST950101 Sequencing ESTs from loblo... 138 2e-032
gb|DR024998.1|DR024998 STRS1_69_A06.b1_A034 Shoot tip pitch... 138 2e-032
gb|AW698173.1|AW698173 NXNV_074_B10_F Nsf Xylem Normal wood... 137 6e-032
gb|DN458383.1|DN458383 EST954182 Sequencing ESTs from loblo... 137 6e-032
gb|DR689916.1|DR689916 EST1080002 Normalized pine embryo li... 137 6e-032
gb|DN459451.1|DN459451 EST955250 Sequencing ESTs from loblo... 133 6e-031
gb|AW010249.1|AW010249 ST03H01 Pine TriplEx shoot tip libra... 96 1e-030
gb|DR059162.1|DR059162 RTNIT1_16_C04.b1_A029 Roots minus ni... 131 3e-030
gb|BF778582.1|BF778582 NXSI_088_D03_F NXSI (Nsf Xylem Side ... 128 3e-029
gb|BQ695717.1|BQ695717 NXPV_031_H11_F NXPV (Nsf Xylem Plani... 121 3e-027
gb|BX249291.1|BX249291 BX249291 Pinus pinaster differenciat... 118 2e-026
gb|BG832474.1|BG832474 NXPV_073_C06_F NXPV (Nsf Xylem Plani... 118 3e-026
gb|AW758915.1|AW758915 NXNV_094_G09_F Nsf Xylem Normal wood... 116 1e-025
gb|BX254319.1|BX254319 BX254319 Pinus pinaster differenciat... 113 9e-025
gb|DR109861.1|DR109861 RTS1_6_A06.b1_A029 Roots minus sulfu... 113 9e-025
gb|AW290272.1|AW290272 NXNV017F11F Nsf Xylem Normal wood Ve... 108 3e-023
gb|CD026930.1|CD026930 NXNV017F11 Nsf Xylem Normal wood Ver... 108 3e-023
>gb|BQ654594.1|BQ654594 NXRV082_F11_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV082_F11 5' similar to Arabidopsis thaliana
sequence At5g39320 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 632
Score = 146 bits (314), Expect = 8e-035
Identities = 55/79 (69%), Positives = 68/79 (86%)
Frame = -3 / +3
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA +DAH VCIL EWDEF+TLD++++ D M KPAFIFDGRN+VD KLR+IGF+VY+I
Sbjct: 192 AYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSI 371
Query: 305 GKPLDDWLKDMPAVA*SID 249
GKPLD W+KD+PA A* I+
Sbjct: 372 GKPLDPWVKDLPASA*KIE 428
>gb|BQ701947.1|BQ701947 NXSI_122_E05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_122_E05 5' similar to Arabidopsis thaliana
sequence At3g29360 UDP-glucose dehydrogenase, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 404
Score = 146 bits (314), Expect = 8e-035
Identities = 55/79 (69%), Positives = 68/79 (86%)
Frame = -3 / +3
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA +DAH VCIL EWDEF+TLD++++ D M KPAFIFDGRN+VD KLR+IGF+VY+I
Sbjct: 120 AYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSI 299
Query: 305 GKPLDDWLKDMPAVA*SID 249
GKPLD W+KD+PA A* I+
Sbjct: 300 GKPLDPWVKDLPASA*KIE 356
>gb|DR017543.1|DR017543 STRS1_17_A06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_A06_A034 3', mRNA sequence
Length = 673
Score = 146 bits (314), Expect = 8e-035
Identities = 55/79 (69%), Positives = 68/79 (86%)
Frame = -3 / +1
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA +DAH VCIL EWDEF+TLD++++ D M KPAFIFDGRN+VD KLR+IGF+VY+I
Sbjct: 118 AYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSI 297
Query: 305 GKPLDDWLKDMPAVA*SID 249
GKPLD W+KD+PA A* I+
Sbjct: 298 GKPLDPWVKDLPASA*KIE 354
>gb|DR017618.1|DR017618 STRS1_17_A06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_A06_A034 5', mRNA sequence
Length = 674
Score = 146 bits (314), Expect = 8e-035
Identities = 55/79 (69%), Positives = 68/79 (86%)
Frame = -3 / +3
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA +DAH VCIL EWDEF+TLD++++ D M KPAFIFDGRN+VD KLR+IGF+VY+I
Sbjct: 225 AYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSI 404
Query: 305 GKPLDDWLKDMPAVA*SID 249
GKPLD W+KD+PA A* I+
Sbjct: 405 GKPLDPWVKDLPASA*KIE 461
>gb|DR018115.1|DR018115 STRS1_20_C07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_20_C07_A034 5', mRNA sequence
Length = 822
Score = 146 bits (314), Expect = 8e-035
Identities = 55/79 (69%), Positives = 68/79 (86%)
Frame = -3 / +3
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA +DAH VCIL EWDEF+TLD++++ D M KPAFIFDGRN+VD KLR+IGF+VY+I
Sbjct: 180 AYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSI 359
Query: 305 GKPLDDWLKDMPAVA*SID 249
GKPLD W+KD+PA A* I+
Sbjct: 360 GKPLDPWVKDLPASA*KIE 416
>gb|DR024764.1|DR024764 STRS1_67_G11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_67_G11_A034 3', mRNA sequence
Length = 766
Score = 146 bits (314), Expect = 8e-035
Identities = 55/79 (69%), Positives = 68/79 (86%)
Frame = -3 / +2
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA +DAH VCIL EWDEF+TLD++++ D M KPAFIFDGRN+VD KLR+IGF+VY+I
Sbjct: 32 AYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSI 211
Query: 305 GKPLDDWLKDMPAVA*SID 249
GKPLD W+KD+PA A* I+
Sbjct: 212 GKPLDPWVKDLPASA*KIE 268
>gb|DR053888.1|DR053888 RTCA1_14_A01.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_14_A01_A029 3', mRNA sequence
Length = 858
Score = 146 bits (314), Expect = 8e-035
Identities = 55/79 (69%), Positives = 68/79 (86%)
Frame = -3 / +2
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA +DAH VCIL EWDEF+TLD++++ D M KPAFIFDGRN+VD KLR+IGF+VY+I
Sbjct: 200 AYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSI 379
Query: 305 GKPLDDWLKDMPAVA*SID 249
GKPLD W+KD+PA A* I+
Sbjct: 380 GKPLDPWVKDLPASA*KIE 436
>gb|DR053962.1|DR053962 RTCA1_14_A01.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_14_A01_A029 5', mRNA sequence
Length = 695
Score = 146 bits (314), Expect = 8e-035
Identities = 55/79 (69%), Positives = 68/79 (86%)
Frame = -3 / +2
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA +DAH VCIL EWDEF+TLD++++ D M KPAFIFDGRN+VD KLR+IGF+VY+I
Sbjct: 257 AYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSI 436
Query: 305 GKPLDDWLKDMPAVA*SID 249
GKPLD W+KD+PA A* I+
Sbjct: 437 GKPLDPWVKDLPASA*KIE 493
>gb|DR099712.1|DR099712 STRR1_58_A03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_58_A03_A033 3', mRNA sequence
Length = 752
Score = 146 bits (314), Expect = 8e-035
Identities = 55/79 (69%), Positives = 68/79 (86%)
Frame = -3 / +2
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA +DAH VCIL EWDEF+TLD++++ D M KPAFIFDGRN+VD KLR+IGF+VY+I
Sbjct: 26 AYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSI 205
Query: 305 GKPLDDWLKDMPAVA*SID 249
GKPLD W+KD+PA A* I+
Sbjct: 206 GKPLDPWVKDLPASA*KIE 262
>gb|DR100066.1|DR100066 STRR1_61_H02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_61_H02_A033 3', mRNA sequence
Length = 802
Score = 146 bits (314), Expect = 8e-035
Identities = 55/79 (69%), Positives = 68/79 (86%)
Frame = -3 / +2
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA +DAH VCIL EWDEF+TLD++++ D M KPAFIFDGRN+VD KLR+IGF+VY+I
Sbjct: 140 AYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSI 319
Query: 305 GKPLDDWLKDMPAVA*SID 249
GKPLD W+KD+PA A* I+
Sbjct: 320 GKPLDPWVKDLPASA*KIE 376
>gb|DR180220.1|DR180220 RTMNUT1_27_E10.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_27_E10_A029 3', mRNA sequence
Length = 813
Score = 146 bits (314), Expect = 8e-035
Identities = 55/79 (69%), Positives = 68/79 (86%)
Frame = -3 / +3
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA +DAH VCIL EWDEF+TLD++++ D M KPAFIFDGRN+VD KLR+IGF+VY+I
Sbjct: 87 AYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSI 266
Query: 305 GKPLDDWLKDMPAVA*SID 249
GKPLD W+KD+PA A* I+
Sbjct: 267 GKPLDPWVKDLPASA*EIE 323
>gb|BE431388.1|BE431388 NXNV_181_F06_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_181_F06 5' similar to Arabidopsis thaliana
sequence At3g29360 UDP-glucose dehydrogenase, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 476
Score = 144 bits (308), Expect = 5e-034
Identities = 54/79 (68%), Positives = 67/79 (84%)
Frame = -3 / +3
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA +DAH VCIL EWDEF+TLD++++ D M KPAFIFDGRN+VD KL +IGF+VY+I
Sbjct: 150 AYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLXKIGFIVYSI 329
Query: 305 GKPLDDWLKDMPAVA*SID 249
GKPLD W+KD+PA A* I+
Sbjct: 330 GKPLDPWVKDLPASA*KIE 386
>gb|BQ699235.1|BQ699235 NXRV121_B08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV121_B08 5' similar to Arabidopsis thaliana
sequence At5g39320 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 550
Score = 144 bits (308), Expect = 5e-034
Identities = 54/76 (71%), Positives = 66/76 (86%)
Frame = -3 / +1
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA +DAH VCIL EWDEF+TLD++++ D M KPAFIFDGRN+VD KLR+IGF+VY+I
Sbjct: 262 AYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSI 441
Query: 305 GKPLDDWLKDMPAVA* 258
GKPLD W+KD+PA A*
Sbjct: 442 GKPLDPWVKDLPASA* 489
>gb|DR024846.1|DR024846 STRS1_67_G11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_67_G11_A034 5', mRNA sequence
Length = 400
Score = 144 bits (308), Expect = 5e-034
Identities = 53/73 (72%), Positives = 64/73 (87%)
Frame = -3 / +2
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA +DAH VCIL EWDEFRTLD++++ D M KPAFIFDGRN+VD KLR+IGF+VY+I
Sbjct: 179 AYEATKDAHGVCILTEWDEFRTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSI 358
Query: 305 GKPLDDWLKDMPA 267
GKPLD W+KD+PA
Sbjct: 359 GKPLDPWVKDLPA 397
>gb|DR109689.1|DR109689 RTS1_4_B09.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_4_B09_A029 3', mRNA sequence
Length = 737
Score = 143 bits (306), Expect = 1e-033
Identities = 54/79 (68%), Positives = 67/79 (84%)
Frame = -3 / +2
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA +DAH VCIL EWDEF+TLD++++ D M K AFIFDGRN+VD KLR+IGF+VY+I
Sbjct: 89 AYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKSAFIFDGRNIVDVEKLRKIGFIVYSI 268
Query: 305 GKPLDDWLKDMPAVA*SID 249
GKPLD W+KD+PA A* I+
Sbjct: 269 GKPLDPWVKDLPASA*KIE 325
>gb|BQ695622.1|BQ695622 NXPV_030_E10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_030_E10 5' similar to Arabidopsis
thaliana sequence At3g29360 UDP-glucose dehydrogenase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 365
Score = 142 bits (305), Expect = 1e-033
Identities = 52/73 (71%), Positives = 64/73 (87%)
Frame = -3 / +2
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA +DAH VCIL EWDEF+TLD++++ D M KPAFIFDGRN+VD KLR+IGF+VY+I
Sbjct: 2 AYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSI 181
Query: 305 GKPLDDWLKDMPA 267
GKPLD W+KD+PA
Sbjct: 182 GKPLDXWVKDLPA 220
>gb|BX249566.1|BX249566 BX249566 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP025E08, mRNA sequence
Length = 601
Score = 142 bits (304), Expect = 2e-033
Identities = 53/76 (69%), Positives = 66/76 (86%)
Frame = -3 / -2
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEAA+DAH VCI+ EWDEFR LDY+R++D M KPAFIFDGRN+V+ +LR+IGF+VY+I
Sbjct: 489 AYEAAKDAHGVCIVTEWDEFRNLDYQRIYDNMQKPAFIFDGRNIVNVEQLRKIGFIVYSI 310
Query: 305 GKPLDDWLKDMPAVA* 258
GKPLD W+KD+P A*
Sbjct: 309 GKPLDPWVKDLPISA* 262
>gb|DR098956.1|DR098956 STRR1_49_C11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_49_C11_A033 3', mRNA sequence
Length = 717
Score = 142 bits (304), Expect = 2e-033
Identities = 53/76 (69%), Positives = 66/76 (86%)
Frame = -3 / -3
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEAA+DAH VCI+ EWDEFR LDY+R++D M KPAFIFDGRN+V+ +LR+IGF+VY+I
Sbjct: 424 AYEAAKDAHGVCIVTEWDEFRNLDYQRIYDNMQKPAFIFDGRNIVNVEQLRKIGFIVYSI 245
Query: 305 GKPLDDWLKDMPAVA* 258
GKPLD W+KD+P A*
Sbjct: 244 GKPLDPWVKDLPISA* 197
>gb|DR682506.1|DR682506 EST1072581 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAA32, mRNA sequence
Length = 788
Score = 142 bits (304), Expect = 2e-033
Identities = 53/76 (69%), Positives = 66/76 (86%)
Frame = -3 / -3
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEAA+DAH VCI+ EWDEFR LDY+R++D M KPAFIFDGRN+V+ +LR+IGF+VY+I
Sbjct: 303 AYEAAKDAHGVCIVTEWDEFRNLDYQRIYDNMQKPAFIFDGRNIVNVEQLRKIGFIVYSI 124
Query: 305 GKPLDDWLKDMPAVA* 258
GKPLD W+KD+P A*
Sbjct: 123 GKPLDPWVKDLPISA* 76
>gb|BQ696271.1|BQ696271 NXPV_037_D02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_037_D02 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 558
Score = 138 bits (297), Expect = 2e-032
Identities = 49/73 (67%), Positives = 63/73 (86%)
Frame = -3 / +3
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA ++AH VCIL EWDEF+ LDY ++++ M KPAF+FDGRNVVD KLR+IGF+VY++
Sbjct: 204 AYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVDAEKLRKIGFIVYSV 383
Query: 305 GKPLDDWLKDMPA 267
GKPLD W+KD+PA
Sbjct: 384 GKPLDXWIKDLPA 422
>gb|CF390890.1|CF390890 RTDR3_2_G07.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_G07_A022 5', mRNA
sequence
Length = 791
Score = 138 bits (297), Expect = 2e-032
Identities = 49/73 (67%), Positives = 63/73 (86%)
Frame = -3 / +1
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA ++AH VCIL EWDEF+ LDY ++++ M KPAF+FDGRNVVD KLR+IGF+VY++
Sbjct: 238 AYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVDAEKLRKIGFIVYSV 417
Query: 305 GKPLDDWLKDMPA 267
GKPLD W+KD+PA
Sbjct: 418 GKPLDPWIKDLPA 456
>gb|CF391306.1|CF391306 RTDR3_1_G02.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_G02_A022 3', mRNA
sequence
Length = 632
Score = 138 bits (297), Expect = 2e-032
Identities = 49/73 (67%), Positives = 63/73 (86%)
Frame = -3 / +1
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA ++AH VCIL EWDEF+ LDY ++++ M KPAF+FDGRNVVD KLR+IGF+VY++
Sbjct: 157 AYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVDAEKLRKIGFIVYSV 336
Query: 305 GKPLDDWLKDMPA 267
GKPLD W+KD+PA
Sbjct: 337 GKPLDPWIKDLPA 375
>gb|CF391347.1|CF391347 RTDR3_1_F02.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_F02_A022 3', mRNA
sequence
Length = 676
Score = 138 bits (297), Expect = 2e-032
Identities = 49/73 (67%), Positives = 63/73 (86%)
Frame = -3 / +3
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA ++AH VCIL EWDEF+ LDY ++++ M KPAF+FDGRNVVD KLR+IGF+VY++
Sbjct: 201 AYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVDAEKLRKIGFIVYSV 380
Query: 305 GKPLDDWLKDMPA 267
GKPLD W+KD+PA
Sbjct: 381 GKPLDPWIKDLPA 419
>gb|CO200244.1|CO200244 GEO2_6_F09.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_F09_A032 3', mRNA sequence
Length = 870
Score = 138 bits (297), Expect = 2e-032
Identities = 49/73 (67%), Positives = 63/73 (86%)
Frame = -3 / +1
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA ++AH VCIL EWDEF+ LDY ++++ M KPAF+FDGRNVVD KLR+IGF+VY++
Sbjct: 97 AYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVDAEKLRKIGFIVYSV 276
Query: 305 GKPLDDWLKDMPA 267
GKPLD W+KD+PA
Sbjct: 277 GKPLDPWIKDLPA 315
>gb|CO200327.1|CO200327 GEO2_6_F09.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_F09_A032 5', mRNA sequence
Length = 817
Score = 138 bits (297), Expect = 2e-032
Identities = 49/73 (67%), Positives = 63/73 (86%)
Frame = -3 / +1
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA ++AH VCIL EWDEF+ LDY ++++ M KPAF+FDGRNVVD KLR+IGF+VY++
Sbjct: 211 AYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVDAEKLRKIGFIVYSV 390
Query: 305 GKPLDDWLKDMPA 267
GKPLD W+KD+PA
Sbjct: 391 GKPLDPWIKDLPA 429
>gb|CV138136.1|CV138136 EST849345 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAZ35 5' end, mRNA sequence
Length = 915
Score = 138 bits (297), Expect = 2e-032
Identities = 49/73 (67%), Positives = 63/73 (86%)
Frame = -3 / +1
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA ++AH VCIL EWDEF+ LDY ++++ M KPAF+FDGRNVVD KLR+IGF+VY++
Sbjct: 493 AYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVDAEKLRKIGFIVYSV 672
Query: 305 GKPLDDWLKDMPA 267
GKPLD W+KD+PA
Sbjct: 673 GKPLDPWIKDLPA 711
>gb|DN454302.1|DN454302 EST950101 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIG215 5' end, mRNA sequence
Length = 859
Score = 138 bits (297), Expect = 2e-032
Identities = 49/73 (67%), Positives = 63/73 (86%)
Frame = -3 / +2
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA ++AH VCIL EWDEF+ LDY ++++ M KPAF+FDGRNVVD KLR+IGF+VY++
Sbjct: 632 AYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVDAEKLRKIGFIVYSV 811
Query: 305 GKPLDDWLKDMPA 267
GKPLD W+KD+PA
Sbjct: 812 GKPLDPWIKDLPA 850
>gb|DR024998.1|DR024998 STRS1_69_A06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_69_A06_A034 3', mRNA sequence
Length = 841
Score = 138 bits (297), Expect = 2e-032
Identities = 49/73 (67%), Positives = 63/73 (86%)
Frame = -3 / +3
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA ++AH VCIL EWDEF+ LDY ++++ M KPAF+FDGRNVVD KLR+IGF+VY++
Sbjct: 198 AYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVDAEKLRKIGFIVYSV 377
Query: 305 GKPLDDWLKDMPA 267
GKPLD W+KD+PA
Sbjct: 378 GKPLDPWIKDLPA 416
>gb|AW698173.1|AW698173 NXNV_074_B10_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_074_B10 5' similar to Arabidopsis thaliana
sequence At5g15490 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 340
Score = 137 bits (293), Expect = 6e-032
Identities = 48/72 (66%), Positives = 62/72 (86%)
Frame = -3 / +3
Query: 482 YEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAIG 303
YEA ++AH VCIL EWDEF+ LDY ++++ M KPAF+FDGRNVVD KLR+IGF+VY++G
Sbjct: 3 YEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVDAEKLRKIGFIVYSVG 182
Query: 302 KPLDDWLKDMPA 267
KPLD W+KD+PA
Sbjct: 183 KPLDPWIKDLPA 218
>gb|DN458383.1|DN458383 EST954182 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHB32 5' end, mRNA sequence
Length = 943
Score = 137 bits (293), Expect = 6e-032
Identities = 48/72 (66%), Positives = 62/72 (86%)
Frame = -3 / +2
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA ++AH VCIL EWDEF+ LDY ++++ M KPAF+FDGRNVVD KLR+IGF+VY++
Sbjct: 728 AYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVDAEKLRKIGFIVYSV 907
Query: 305 GKPLDDWLKDMP 270
GKPLD W+KD+P
Sbjct: 908 GKPLDPWIKDLP 943
>gb|DR689916.1|DR689916 EST1080002 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACO92 3' end, mRNA sequence
Length = 841
Score = 137 bits (293), Expect = 6e-032
Identities = 48/73 (65%), Positives = 62/73 (84%)
Frame = -3 / +2
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA ++AH VCIL EWDEF+ LDY ++++ M KPAF+FDGRN VD KLR+IGF+VY++
Sbjct: 404 AYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNAVDAEKLRKIGFIVYSV 583
Query: 305 GKPLDDWLKDMPA 267
GKPLD W+KD+PA
Sbjct: 584 GKPLDPWIKDLPA 622
>gb|DN459451.1|DN459451 EST955250 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHN31 5' end, mRNA sequence
Length = 922
Score = 133 bits (286), Expect = 6e-031
Identities = 47/71 (66%), Positives = 61/71 (85%)
Frame = -3 / +3
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA ++AH VCIL EWDEF+ LDY ++++ M KPAF+FDGRNVVD KLR+IGF+VY++
Sbjct: 708 AYEATKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVDAEKLRKIGFIVYSV 887
Query: 305 GKPLDDWLKDM 273
GKPLD W+KD+
Sbjct: 888 GKPLDPWIKDL 920
>gb|AW010249.1|AW010249 ST03H01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST03H01, mRNA sequence
Length = 650
Score = 95.9 bits (203), Expect(2) = 1e-030
Identities = 37/59 (62%), Positives = 47/59 (79%)
Frame = -3 / +3
Query: 425 RTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAIGKPLDDWLKDMPAVA*SID 249
R +++ D M KPAFIFDGRN+VD KLR+IGF+VY+IGKPLD W+KD+PA A* I+
Sbjct: 69 RLWTFRKFSDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSIGKPLDPWVKDLPASA*KIE 245
Score = 57.0 bits (118), Expect(2) = 1e-030
Identities = 19/28 (67%), Positives = 25/28 (89%)
Frame = -3 / +2
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRM 402
AYEA +DAH VCIL EWDEF+TLD++++
Sbjct: 8 AYEATKDAHGVCILTEWDEFKTLDFQKI 91
>gb|DR059162.1|DR059162 RTNIT1_16_C04.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_16_C04_A029 3', mRNA sequence
Length = 624
Score = 131 bits (281), Expect = 3e-030
Identities = 49/72 (68%), Positives = 61/72 (84%)
Frame = -3 / +3
Query: 464 AHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAIGKPLDDW 285
AH VCI EWDEF+TLD++++ D M KPAFIFDGRN+VD KLR+IGF+VY+IGKPLD W
Sbjct: 3 AHGVCIXTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSIGKPLDPW 182
Query: 284 LKDMPAVA*SID 249
+KD+PA A* I+
Sbjct: 183 VKDLPASA*EIE 218
>gb|BF778582.1|BF778582 NXSI_088_D03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_088_D03 5' similar to Arabidopsis thaliana
sequence At5g39320 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 439
Score = 128 bits (274), Expect = 3e-029
Identities = 48/69 (69%), Positives = 60/69 (86%)
Frame = -3 / +3
Query: 455 VCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAIGKPLDDWLKD 276
VCIL EWDEF+TLD++++ D M KPAFIFDGRN+VD KLR+IGF+VY+IGKPLD W+KD
Sbjct: 3 VCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSIGKPLDPWVKD 182
Query: 275 MPAVA*SID 249
+PA A* I+
Sbjct: 183 LPASA*KIE 209
>gb|BQ695717.1|BQ695717 NXPV_031_H11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_031_H11 5' similar to Arabidopsis
thaliana sequence At3g29360 UDP-glucose dehydrogenase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 528
Score = 121 bits (259), Expect = 3e-027
Identities = 45/67 (67%), Positives = 54/67 (80%)
Frame = -3 / +1
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA +DAH VCIL EWDEF+TLD++++ D M KPAFIFDG N+VD KL IGF+VY+I
Sbjct: 307 AYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGXNIVDVEKLXXIGFIVYSI 486
Query: 305 GKPLDDW 285
GKPL W
Sbjct: 487 GKPLXXW 507
>gb|BX249291.1|BX249291 BX249291 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP022C10, mRNA sequence
Length = 673
Score = 118 bits (253), Expect = 2e-026
Identities = 44/62 (70%), Positives = 54/62 (87%)
Frame = -3 / +2
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYEA +DAH VCIL EWDEF+TLD++++ D M KPAFIFDGRN+VD KLR+IGF+VY+I
Sbjct: 488 AYEATKDAHGVCILTEWDEFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSI 667
Query: 305 GK 300
GK
Sbjct: 668 GK 673
>gb|BG832474.1|BG832474 NXPV_073_C06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_073_C06 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 468
Score = 118 bits (252), Expect = 3e-026
Identities = 43/73 (58%), Positives = 55/73 (75%)
Frame = -3 / +3
Query: 485 AYEAARDAHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAI 306
AYE ++AH VCIL EWDEF+ LDY ++++ M KPAF+FDGRNVV KLR+IG VY+
Sbjct: 234 AYEXTKNAHGVCILTEWDEFKNLDYGKIYENMEKPAFVFDGRNVVXAEKLRKIGXXVYSX 413
Query: 305 GKPLDDWLKDMPA 267
GKPL W+ +PA
Sbjct: 414 GKPLGSWIXXLPA 452
>gb|AW758915.1|AW758915 NXNV_094_G09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_094_G09 5' similar to Arabidopsis thaliana
sequence At5g39320 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 386
Score = 116 bits (247), Expect = 1e-025
Identities = 43/64 (67%), Positives = 55/64 (85%)
Frame = -3 / +2
Query: 449 ILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAIGKPLDDWLKDMP 270
I+ EWDEFR LDY+R++D M KPAFIFDGRN+V+ +LR+IGF+VY+IGKPLD W+KD+P
Sbjct: 2 IVXEWDEFRNLDYQRIYDNMQKPAFIFDGRNIVNVEQLRKIGFIVYSIGKPLDPWVKDLP 181
Query: 269 AVA* 258
A*
Sbjct: 182 ISA* 193
>gb|BX254319.1|BX254319 BX254319 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP096G05, mRNA sequence
Length = 648
Score = 113 bits (241), Expect = 9e-025
Identities = 39/58 (67%), Positives = 51/58 (87%)
Frame = -3 / +3
Query: 440 EWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAIGKPLDDWLKDMPA 267
EWDEF+ LDY ++++ M KPAF+FDGRNVVD KLR+IGF+VY++GKPLD W+KD+PA
Sbjct: 3 EWDEFKNLDYGKIYENMEKPAFVFDGRNVVDAEKLRKIGFIVYSVGKPLDPWIKDLPA 176
>gb|DR109861.1|DR109861 RTS1_6_A06.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_6_A06_A029 3', mRNA sequence
Length = 421
Score = 113 bits (241), Expect = 9e-025
Identities = 39/58 (67%), Positives = 51/58 (87%)
Frame = -3 / +2
Query: 440 EWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAIGKPLDDWLKDMPA 267
EWDEF+ LDY ++++ M KPAF+FDGRNVVD KLR+IGF+VY++GKPLD W+KD+PA
Sbjct: 5 EWDEFKNLDYGKIYENMEKPAFVFDGRNVVDAEKLRKIGFIVYSVGKPLDPWIKDLPA 178
>gb|AW290272.1|AW290272 NXNV017F11F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV017F11 5', mRNA sequence
Length = 362
Score = 108 bits (230), Expect = 3e-023
Identities = 41/62 (66%), Positives = 53/62 (85%)
Frame = -3 / +2
Query: 434 DEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAIGKPLDDWLKDMPAVA*S 255
D F+TLD++++ D M KPAFIFDGRN+VD KLR+IGF+VY+IGKPLD W+KD+PA A*
Sbjct: 2 DVFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSIGKPLDPWVKDLPASA*K 181
Query: 254 ID 249
I+
Sbjct: 182 IE 187
>gb|CD026930.1|CD026930 NXNV017F11 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV017F11 5' similar to Arabidopsis thaliana sequence
At5g39320 UDP-glucose dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 362
Score = 108 bits (230), Expect = 3e-023
Identities = 41/62 (66%), Positives = 53/62 (85%)
Frame = -3 / +2
Query: 434 DEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAIGKPLDDWLKDMPAVA*S 255
D F+TLD++++ D M KPAFIFDGRN+VD KLR+IGF+VY+IGKPLD W+KD+PA A*
Sbjct: 2 DVFKTLDFQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSIGKPLDPWVKDLPASA*K 181
Query: 254 ID 249
I+
Sbjct: 182 IE 187
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 195,317,392
Number of Sequences: 355925
Number of extensions: 2337967
Number of successful extensions: 34355
Number of sequences better than 1.0e-020: 58
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 5970092700
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)