TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713074.2.1
(527 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response R... 115 3e-025
gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response R... 115 3e-025
gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side ... 114 4e-025
gb|CF389519.1|CF389519 RTDR2_8_B11.b1_A021 Loblolly pine ro... 114 4e-025
gb|CF670190.1|CF670190 RTCNT1_48_D08.g1_A029 Root control P... 114 4e-025
gb|CO363849.1|CO363849 RTK1_12_E06.b1_A029 Roots minus pota... 114 4e-025
gb|CO365399.1|CO365399 RTK1_25_B06.g1_A029 Roots minus pota... 114 4e-025
gb|CO365443.1|CO365443 RTK1_17_C10.b1_A029 Roots minus pota... 114 4e-025
gb|CO365529.1|CO365529 RTK1_17_C10.g1_A029 Roots minus pota... 114 4e-025
gb|CO369002.1|CO369002 RTK1_44_F12.b1_A029 Roots minus pota... 114 4e-025
gb|DR017548.1|DR017548 STRS1_17_B02.b1_A034 Shoot tip pitch... 114 4e-025
gb|DR017625.1|DR017625 STRS1_17_B02.g1_A034 Shoot tip pitch... 114 4e-025
gb|DR091080.1|DR091080 RTAL1_19_F09.b1_A029 Roots plus adde... 114 4e-025
gb|DR091162.1|DR091162 RTAL1_19_F09.g1_A029 Roots plus adde... 114 4e-025
gb|DR166003.1|DR166003 RTPHOS1_8_E04.g1_A029 Roots minus ph... 114 4e-025
gb|CO365327.1|CO365327 RTK1_25_B06.b1_A029 Roots minus pota... 112 1e-024
gb|AI725280.1|AI725280 1146 PtIFG2 Pinus taeda cDNA clone 9... 112 2e-024
gb|CF393001.1|CF393001 RTDR3_18_E12.g1_A022 Loblolly pine r... 111 4e-024
gb|DR097306.1|DR097306 STRR1_33_G07.g3_A033 Stem Response R... 109 2e-023
gb|CO369078.1|CO369078 RTK1_44_F12.g1_A029 Roots minus pota... 107 6e-023
>gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_C06_A033 3', mRNA sequence
Length = 806
Score = 115 bits (245), Expect = 3e-025
Identities = 43/56 (76%), Positives = 49/56 (87%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL DDN+F+ADALQSLT NLCY
Sbjct: 204 GTVVDSTICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDDNRFSADALQSLTNNLCY 371
>gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_G07_A033 3', mRNA sequence
Length = 857
Score = 115 bits (245), Expect = 3e-025
Identities = 43/56 (76%), Positives = 49/56 (87%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL DDN+F+ADALQSLT NLCY
Sbjct: 163 GTVVDSTICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDDNRFSADALQSLTNNLCY 330
>gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_A07 5' similar to Arabidopsis thaliana
sequence At1g48410 Argonaute protein AGO1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 86 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 253
>gb|CF389519.1|CF389519 RTDR2_8_B11.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_B11_A021 3', mRNA
sequence
Length = 645
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 35 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 202
>gb|CF670190.1|CF670190 RTCNT1_48_D08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_D08_A029 5', mRNA sequence
Length = 797
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 543 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 710
>gb|CO363849.1|CO363849 RTK1_12_E06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_E06_A029 3', mRNA sequence
Length = 900
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 207 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 374
>gb|CO365399.1|CO365399 RTK1_25_B06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_B06_A029 5', mRNA sequence
Length = 845
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 308 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 475
>gb|CO365443.1|CO365443 RTK1_17_C10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_C10_A029 3', mRNA sequence
Length = 871
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 162 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 329
>gb|CO365529.1|CO365529 RTK1_17_C10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_C10_A029 5', mRNA sequence
Length = 831
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 479 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 646
>gb|CO369002.1|CO369002 RTK1_44_F12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_F12_A029 3', mRNA sequence
Length = 823
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 119 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 286
>gb|DR017548.1|DR017548 STRS1_17_B02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_B02_A034 3', mRNA sequence
Length = 759
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 66 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 233
>gb|DR017625.1|DR017625 STRS1_17_B02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_B02_A034 5', mRNA sequence
Length = 626
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 251 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 418
>gb|DR091080.1|DR091080 RTAL1_19_F09.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_F09_A029 3', mRNA sequence
Length = 741
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 43 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 210
>gb|DR091162.1|DR091162 RTAL1_19_F09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_F09_A029 5', mRNA sequence
Length = 796
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 285 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 452
>gb|DR166003.1|DR166003 RTPHOS1_8_E04.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_8_E04_A029 5', mRNA sequence
Length = 924
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 441 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 608
>gb|CO365327.1|CO365327 RTK1_25_B06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_B06_A029 3', mRNA sequence
Length = 755
Score = 112 bits (240), Expect = 1e-024
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT N CY
Sbjct: 57 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNFCY 224
>gb|AI725280.1|AI725280 1146 PtIFG2 Pinus taeda cDNA clone 9201r, mRNA sequence
Length = 580
Score = 112 bits (239), Expect = 2e-024
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTV D+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 124 GTVXDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 291
>gb|CF393001.1|CF393001 RTDR3_18_E12.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_18_E12_A022 5', mRNA
sequence
Length = 748
Score = 111 bits (237), Expect = 4e-024
Identities = 42/55 (76%), Positives = 47/55 (85%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLC 174
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLC
Sbjct: 582 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLC 746
>gb|DR097306.1|DR097306 STRR1_33_G07.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_G07_A033 5', mRNA sequence
Length = 840
Score = 109 bits (232), Expect = 2e-023
Identities = 42/56 (75%), Positives = 45/56 (80%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTE DF++C HA GTS P HYHVL DDN FTADALQSLT NLCY
Sbjct: 347 GTVVDSTICHPTELDFYLCSHAGIHGTSTPAHYHVLWDDNTFTADALQSLTNNLCY 514
>gb|CO369078.1|CO369078 RTK1_44_F12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_F12_A029 5', mRNA sequence
Length = 779
Score = 107 bits (228), Expect = 6e-023
Identities = 41/54 (75%), Positives = 46/54 (85%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNL 171
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NL
Sbjct: 616 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNL 777
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 320,799,030
Number of Sequences: 355925
Number of extensions: 4736429
Number of successful extensions: 52781
Number of sequences better than 1.0e-020: 23
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 6729922680
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)