TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712967.2.1
(571 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR015139.1|DR015139 STRS1_1_E12.g1_A034 Shoot tip pitch ... 85 4e-021
gb|DR015053.1|DR015053 STRS1_1_E12.b1_A034 Shoot tip pitch ... 85 4e-021
gb|DR102882.1|DR102882 STRR1_84_G03.g1_A033 Stem Response R... 85 4e-021
gb|CO159712.1|CO159712 FLD1_15_G12.b1_A029 Root flooded Pin... 85 4e-021
gb|CO160722.1|CO160722 FLD1_23_D07.g1_A029 Root flooded Pin... 85 4e-021
gb|CO160664.1|CO160664 FLD1_23_D07.b1_A029 Root flooded Pin... 85 4e-021
gb|DR102830.1|DR102830 STRR1_84_G03.b1_A033 Stem Response R... 85 4e-021
gb|CO159211.1|CO159211 FLD1_12_E03.b1_A029 Root flooded Pin... 85 4e-021
gb|BX679734.1|BX679734 BX679734 RS Pinus pinaster cDNA clon... 101 4e-021
>gb|DR015139.1|DR015139 STRS1_1_E12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_1_E12_A034 5', mRNA sequence
Length = 893
Score = 84.9 bits (179), Expect(2) = 4e-021
Identities = 30/69 (43%), Positives = 45/69 (65%)
Frame = +2 / +2
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
+ TYLGRPWK+++RTV M+S +D + G++ W+G L T ++GE+ N G GA + R
Sbjct: 410 IKTYLGRPWKQYSRTVFMQSALDDLIDPAGWLEWDGNFALQTLYYGEYLNTGAGAGTSKR 589
Query: 248 KEMQGFHVM 274
GFHV+
Sbjct: 590 VSWPGFHVI 616
Score = 35.9 bits (72), Expect(2) = 4e-021
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2 / +2
Query: 287 ALQFTVGHFLHGADWIPETG 346
A QFTVG F+ G WIP TG
Sbjct: 632 AAQFTVGQFISGNSWIPATG 691
>gb|DR015053.1|DR015053 STRS1_1_E12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_1_E12_A034 3', mRNA sequence
Length = 813
Score = 84.9 bits (179), Expect(2) = 4e-021
Identities = 30/69 (43%), Positives = 45/69 (65%)
Frame = +2 / +1
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
+ TYLGRPWK+++RTV M+S +D + G++ W+G L T ++GE+ N G GA + R
Sbjct: 94 IKTYLGRPWKQYSRTVFMQSALDDLIDPAGWLEWDGNFALQTLYYGEYLNTGAGAGTSKR 273
Query: 248 KEMQGFHVM 274
GFHV+
Sbjct: 274 VSWPGFHVI 300
Score = 35.9 bits (72), Expect(2) = 4e-021
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2 / +1
Query: 287 ALQFTVGHFLHGADWIPETG 346
A QFTVG F+ G WIP TG
Sbjct: 316 AAQFTVGQFISGNSWIPATG 375
>gb|DR102882.1|DR102882 STRR1_84_G03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_84_G03_A033 5', mRNA sequence
Length = 771
Score = 84.9 bits (179), Expect(2) = 4e-021
Identities = 30/69 (43%), Positives = 45/69 (65%)
Frame = +2 / +2
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
+ TYLGRPWK+++RTV M+S +D + G++ W+G L T ++GE+ N G GA + R
Sbjct: 482 IKTYLGRPWKQYSRTVFMQSALDDLIDPAGWLEWDGNFALQTLYYGEYLNTGAGAGTSKR 661
Query: 248 KEMQGFHVM 274
GFHV+
Sbjct: 662 VSWPGFHVI 688
Score = 35.9 bits (72), Expect(2) = 4e-021
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2 / +2
Query: 287 ALQFTVGHFLHGADWIPETG 346
A QFTVG F+ G WIP TG
Sbjct: 704 AAQFTVGQFISGNSWIPATG 763
>gb|CO159712.1|CO159712 FLD1_15_G12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_15_G12_A029 3', mRNA sequence
Length = 764
Score = 84.9 bits (179), Expect(2) = 4e-021
Identities = 30/69 (43%), Positives = 45/69 (65%)
Frame = +2 / +3
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
+ TYLGRPWK+++RTV M+S +D + G++ W+G L T ++GE+ N G GA + R
Sbjct: 75 IKTYLGRPWKQYSRTVFMQSALDDLIDPAGWLEWDGNFALQTLYYGEYLNTGAGAGTSKR 254
Query: 248 KEMQGFHVM 274
GFHV+
Sbjct: 255 VSWPGFHVI 281
Score = 35.9 bits (72), Expect(2) = 4e-021
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2 / +3
Query: 287 ALQFTVGHFLHGADWIPETG 346
A QFTVG F+ G WIP TG
Sbjct: 297 AAQFTVGQFISGNSWIPATG 356
>gb|CO160722.1|CO160722 FLD1_23_D07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_23_D07_A029 5', mRNA sequence
Length = 752
Score = 84.9 bits (179), Expect(2) = 4e-021
Identities = 30/69 (43%), Positives = 45/69 (65%)
Frame = +2 / +1
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
+ TYLGRPWK+++RTV M+S +D + G++ W+G L T ++GE+ N G GA + R
Sbjct: 184 IKTYLGRPWKQYSRTVFMQSALDDLIDPAGWLEWDGNFALQTLYYGEYLNTGAGAGTSKR 363
Query: 248 KEMQGFHVM 274
GFHV+
Sbjct: 364 VSWPGFHVI 390
Score = 35.9 bits (72), Expect(2) = 4e-021
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2 / +1
Query: 287 ALQFTVGHFLHGADWIPETG 346
A QFTVG F+ G WIP TG
Sbjct: 406 AAQFTVGQFISGNSWIPATG 465
>gb|CO160664.1|CO160664 FLD1_23_D07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_23_D07_A029 3', mRNA sequence
Length = 742
Score = 84.9 bits (179), Expect(2) = 4e-021
Identities = 30/69 (43%), Positives = 45/69 (65%)
Frame = +2 / +2
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
+ TYLGRPWK+++RTV M+S +D + G++ W+G L T ++GE+ N G GA + R
Sbjct: 20 IKTYLGRPWKQYSRTVFMQSALDDLIDPAGWLEWDGNFALQTLYYGEYLNTGAGAGTSKR 199
Query: 248 KEMQGFHVM 274
GFHV+
Sbjct: 200 VSWPGFHVI 226
Score = 35.9 bits (72), Expect(2) = 4e-021
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2 / +2
Query: 287 ALQFTVGHFLHGADWIPETG 346
A QFTVG F+ G WIP TG
Sbjct: 242 AAQFTVGQFISGNSWIPATG 301
>gb|DR102830.1|DR102830 STRR1_84_G03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_84_G03_A033 3', mRNA sequence
Length = 719
Score = 84.9 bits (179), Expect(2) = 4e-021
Identities = 30/69 (43%), Positives = 45/69 (65%)
Frame = +2 / +1
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
+ TYLGRPWK+++RTV M+S +D + G++ W+G L T ++GE+ N G GA + R
Sbjct: 19 IKTYLGRPWKQYSRTVFMQSALDDLIDPAGWLEWDGNFALQTLYYGEYLNTGAGAGTSKR 198
Query: 248 KEMQGFHVM 274
GFHV+
Sbjct: 199 VSWPGFHVI 225
Score = 35.9 bits (72), Expect(2) = 4e-021
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2 / +1
Query: 287 ALQFTVGHFLHGADWIPETG 346
A QFTVG F+ G WIP TG
Sbjct: 241 AAQFTVGQFISGNSWIPATG 300
>gb|CO159211.1|CO159211 FLD1_12_E03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_12_E03_A029 3', mRNA sequence
Length = 659
Score = 84.9 bits (179), Expect(2) = 4e-021
Identities = 30/69 (43%), Positives = 45/69 (65%)
Frame = +2 / +3
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
+ TYLGRPWK+++RTV M+S +D + G++ W+G L T ++GE+ N G GA + R
Sbjct: 63 IKTYLGRPWKQYSRTVFMQSALDDLIDPAGWLEWDGNFALQTLYYGEYLNTGAGAGTSKR 242
Query: 248 KEMQGFHVM 274
GFHV+
Sbjct: 243 VSWPGFHVI 269
Score = 35.9 bits (72), Expect(2) = 4e-021
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2 / +3
Query: 287 ALQFTVGHFLHGADWIPETG 346
A QFTVG F+ G WIP TG
Sbjct: 285 AAQFTVGQFISGNSWIPATG 344
>gb|BX679734.1|BX679734 BX679734 RS Pinus pinaster cDNA clone RS32E05, mRNA sequence
Length = 553
Score = 101 bits (215), Expect = 4e-021
Identities = 40/89 (44%), Positives = 53/89 (59%)
Frame = +2 / +3
Query: 74 TYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGRKE 253
T+LGRPWK ++RTV +ES ID V G++ W G L T ++GE+ N G GA R +
Sbjct: 285 TFLGRPWKNYSRTVYLESHIDDVVDPAGWLEWSGDFALTTLYYGEYMNSGPGAGTAARVQ 464
Query: 254 MQGFHVMGKDRALQFTVGHFLHGADWIPE 340
G+H M A FTV +F+ G DWI E
Sbjct: 465 WPGYHTMNISDAQNFTVTNFIAGDDWIRE 551
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 231,968,374
Number of Sequences: 355925
Number of extensions: 3066708
Number of successful extensions: 45012
Number of sequences better than 1.0e-020: 9
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7489752660
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)