TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3642920.2.1
(570 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR744317.1|DR744317 RTCU1_21_E03.g1_A029 Roots plus adde... 314 4e-085
gb|BF221350.1|BF221350 NXCI_157_F07_F NXCI (Nsf Xylem Compr... 175 4e-057
gb|BQ697933.1|BQ697933 NXPV_062_F07_F NXPV (Nsf Xylem Plani... 175 7e-053
gb|BQ698491.1|BQ698491 NXPV_070_E11_F NXPV (Nsf Xylem Plani... 169 1e-044
gb|BF010558.1|BF010558 NXCI_086_A04_F NXCI (Nsf Xylem Compr... 132 2e-044
gb|DT637161.1|DT637161 EST1152092 Normalized pine embryo li... 100 7e-044
gb|DR053011.1|DR053011 RTCA1_8_A01.g1_A029 Roots minus calc... 105 7e-044
gb|DR692110.1|DR692110 EST1082197 Normalized pine embryo li... 100 7e-044
gb|BG673827.1|BG673827 NXPV_075_F03_F NXPV (Nsf Xylem Plani... 159 4e-041
gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo li... 107 1e-039
gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo li... 107 1e-039
gb|DT633602.1|DT633602 EST1148533 Normalized pine embryo li... 90 3e-038
gb|DR686821.1|DR686821 EST1076899 Normalized pine embryo li... 90 3e-038
gb|BQ107024.1|BQ107024 NXLV085_F11_F NXLV (Nsf Xylem Late w... 102 1e-029
gb|BE458150.1|BE458150 NXCI_008_C03_F NXCI (Nsf Xylem Compr... 127 8e-029
gb|BQ697965.1|BQ697965 NXPV_063_A07_F NXPV (Nsf Xylem Plani... 115 1e-028
gb|BX254765.1|BX254765 BX254765 Pinus pinaster differenciat... 122 3e-027
gb|BG317381.1|BG317381 NXPV_001_B01_F NXPV (Nsf Xylem Plani... 105 1e-025
gb|BQ197959.1|BQ197959 NXLV123_C04_F NXLV (Nsf Xylem Late w... 99 1e-023
gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus pota... 102 5e-023
gb|AW736910.1|AW736910 NXNV_081_D07_F Nsf Xylem Normal wood... 105 2e-022
gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfu... 105 2e-022
gb|DR161477.1|DR161477 RTFE1_12_B06.b1_A029 Roots minus iro... 105 3e-022
gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo li... 105 3e-022
gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo li... 105 3e-022
gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulf... 104 7e-022
gb|CX713339.1|CX713339 RTPQ1_8_B07.g1_A032 Roots treated wi... 91 9e-022
gb|CD017969.1|CD017969 NXCI_152_H11_F NXCI (Nsf Xylem Compr... 100 8e-021
>gb|DR744317.1|DR744317 RTCU1_21_E03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_E03_A029 5', mRNA sequence
Length = 749
Score = 314 bits (679), Expect = 4e-085
Identities = 126/188 (67%), Positives = 150/188 (79%)
Frame = +3 / +3
Query: 6 HFVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVK 185
HFVL +DN+LAASVVV S ++ PE VFHVITDKKTY AMH+WFAL+ L+PAI+EVK
Sbjct: 102 HFVLPTDNVLAASVVVSSAAKNFATPETAVFHVITDKKTYAAMHAWFALHPLAPAIIEVK 281
Query: 186 GVHQFDWLTQENVPVLESIETQRAARDRYHGSRRPITSANDSPRVFAAKLQAGSPTYTNV 365
VH F+WLT+ENVPVLE +ETQ R YHG T+ +DSP+ A+KL + SP Y ++
Sbjct: 282 SVHHFEWLTKENVPVLEVMETQSEIRRYYHGGHIIGTNLSDSPKTVASKLLSRSPKYMSI 461
Query: 366 LNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETCRGGDSWVMSK 545
LNH+RIY+PELFP+L+KVVFLDDD+V+Q DLSPLWDIDL GKVNGAVETC G D WVMSK
Sbjct: 462 LNHLRIYLPELFPNLHKVVFLDDDIVIQRDLSPLWDIDLQGKVNGAVETCIGNDPWVMSK 641
Query: 546 RFRNYLNF 569
RFR Y NF
Sbjct: 642 RFRTYFNF 665
Score = 116 bits (247), Expect(2) = 6e-036
Identities = 66/132 (50%), Positives = 78/132 (59%)
Frame = -3 / -2
Query: 403 GNNSGMYIRI*LSTLVYVGLPA*SLAAKTLGLSLALVIGRRLPW*RSLAAR*VSIDSSTG 224
G +SG YIR +Y GL + A LG SL LV PW* + VS+ S+TG
Sbjct: 499 GKSSGRYIRKWFRIDIYFGLRESNFEATVLGESLRLVPMM*PPW*YLRISLWVSMTSNTG 320
Query: 223 TFSCVNQSN**TPFTSTIAGLREFKANHECMAG*VFLSVITWKTILSGFSDDLIVDLTTT 44
TFS V+ S **T FTS +AG R KANH CMA VFLSV+T KT +SG + D TTT
Sbjct: 319 TFSLVSHSK**TLFTSMMAGARGCKANHACMAAYVFLSVMT*KTAVSGVAKFFAADETTT 140
Query: 43 EAARMLSDANTK 8
+AAR LS TK
Sbjct: 139 DAARTLSVGKTK 104
Score = 111 bits (237), Expect = 4e-024
Identities = 67/186 (36%), Positives = 96/186 (51%)
Frame = +2 / +2
Query: 8 FCVSIR*HPCSLSCGQINN*IITEA*EDCFPCYY**KDLSCHAFMVCFKFSQSCYC*GER 187
FC + PCS+ I+ A C+Y *+D+ HA MVCF S SC+ *GE+
Sbjct: 104 FCFAN*QCPCSICGSFISCEKFCNARNSSLSCHYR*EDICSHACMVCFASSSSCHH*GEK 283
Query: 188 CSSI*LVNTRKCSCT*INRNSARCQRSLPWKSPPNNQC***PKGFCCQASGRKSNIY*CA 367
CSS *+ N RKCSC + N + LPW S +Q * + C + + + +Y +
Sbjct: 284 CSSF*MANQRKCSCIGSHGNPK*NPKVLPWGSHHRDQSQ*FTQNCCFKITFSQPKVYVNS 463
Query: 368 QSYSNIHA*VVPKPQQSRIS***CCCPA*PITTLGY*SIWEG*WRC*DLQRWR*LGDV*E 547
+ ++ I + KP S +S ** C A* +T +GY +G W *D+ R LG V E
Sbjct: 464 EPFTYISSRAFSKPS*SCVSG**HCDSA*LVTIMGYRPSGQGKWSS*DMHR**PLGYVKE 643
Query: 548 VQELFK 565
VQ +F+
Sbjct: 644 VQNIFQ 661
Score = 76.2 bits (160), Expect(2) = 7e-029
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = -2 / -1
Query: 281 TSMVTISGSALSFY*FKYRNIFLC*PIKLMNTFHLNNSRTERI*SKP*MHGRIGLFISNN 102
T MV S L F+ F+YRNIF *P K+MNTFHLN+ R+ R+ SKP MHG I L I N+
Sbjct: 377 TPMVIPSDFTLGFHDFQYRNIFFG*PFKMMNTFHLNDGRS*RMQSKPCMHGCICLLICND 198
Query: 101 MEN 93
M++
Sbjct: 197 MKD 189
Score = 70.7 bits (148), Expect(2) = 7e-029
Identities = 30/76 (39%), Positives = 51/76 (67%)
Frame = -2 / -1
Query: 569 KV*IIPEPLRHHPTISTSASLNSAINLPR*INIPKW**VMLDNNIIIKKYDFVEAWEQLR 390
K+ I EPL H+P + T A LN +I L + IP W* V L++N+II+K++F++ W++L
Sbjct: 665 KIEICSEPL*HNPGVITYACLNCSIYLALKVYIP*W*QVTLNHNVIIQKHNFMKVWKKLW 486
Query: 389 HVYSNMIEHISICWTS 342
+Y+ M+++ I W +
Sbjct: 485 KIYT*MVQN*HILWAA 438
Score = 54.7 bits (113), Expect(2) = 6e-036
Identities = 25/39 (64%), Positives = 28/39 (71%)
Frame = -3 / -2
Query: 568 KFK*FLNLLDITQLSPPLQVSTAPLTFPDRSISQSGDRS 452
K K LNL DITQ S P+ VSTAP T P RSIS +GD+S
Sbjct: 664 KLKYVLNLFDITQGSLPMHVSTAPFTLP*RSISHNGDKS 548
>gb|BF221350.1|BF221350 NXCI_157_F07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_157_F07 5' similar to Arabidopsis
thaliana sequence At5g15470 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 554
Score = 175 bits (376), Expect(2) = 4e-057
Identities = 69/92 (75%), Positives = 77/92 (83%)
Frame = +3 / +3
Query: 294 TSANDSPRVFAAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWD 473
T DSP + A KLQA SP Y ++LNH+RIY+PELFP+L KVVFLDDD+VVQHDLSPLWD
Sbjct: 159 TDLIDSPYLMALKLQAQSPKYFSILNHVRIYLPELFPNLEKVVFLDDDIVVQHDLSPLWD 338
Query: 474 IDLSGKVNGAVETCRGGDSWVMSKRFRNYLNF 569
IDL GKVNGAVETCRG DSWVMSK +NY NF
Sbjct: 339 IDLQGKVNGAVETCRGEDSWVMSKXXKNYFNF 434
Score = 66.6 bits (139), Expect(2) = 4e-057
Identities = 24/47 (51%), Positives = 33/47 (70%)
Frame = +3 / +3
Query: 132 MHSWFALNSLSPAIVEVKGVHQFDWLTQENVPVLESIETQRAARDRY 272
MH+WFAL+ + AI+EVKG+HQF WL ++ VPVLE ++ R Y
Sbjct: 6 MHAWFALHPIPSAIIEVKGLHQFTWLLKDKVPVLEEMKKDHEIRRHY 146
>gb|BQ697933.1|BQ697933 NXPV_062_F07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_062_F07 5' similar to Arabidopsis
thaliana sequence At5g15470 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 517
Score = 175 bits (376), Expect(2) = 7e-053
Identities = 69/92 (75%), Positives = 77/92 (83%)
Frame = +3 / +1
Query: 294 TSANDSPRVFAAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWD 473
T DSP + A KLQA SP Y ++LNH+RIY+PELFP+L KVVFLDDD+VVQHDLSPLWD
Sbjct: 139 TDLIDSPYLMALKLQAQSPKYFSILNHVRIYLPELFPNLEKVVFLDDDIVVQHDLSPLWD 318
Query: 474 IDLSGKVNGAVETCRGGDSWVMSKRFRNYLNF 569
IDL GKVNGAVETCRG DSWVMSK +NY NF
Sbjct: 319 IDLQGKVNGAVETCRGEDSWVMSKXXKNYFNF 414
Score = 52.4 bits (108), Expect(2) = 7e-053
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +3 / +1
Query: 147 ALNSLSPAIVEVKGVHQFDWLTQENVPVLESIETQRAARDRY 272
AL+ + AI+EVKG+HQF WL ++ VPVLE ++ R Y
Sbjct: 1 ALHPIPSAIIEVKGLHQFTWLLKDKVPVLEEMKKDHEIRRHY 126
>gb|BQ698491.1|BQ698491 NXPV_070_E11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_070_E11 5' similar to Arabidopsis
thaliana sequence At3g01040 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 439
Score = 169 bits (364), Expect(2) = 1e-044
Identities = 66/92 (71%), Positives = 75/92 (81%)
Frame = +3 / +1
Query: 294 TSANDSPRVFAAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWD 473
T DSP + A KLQA SP Y ++LNH+RIY+PELFP+L K+VFLDDD+VVQHDLSPLWD
Sbjct: 91 TDLIDSPYLMALKLQAQSPKYFSILNHVRIYLPELFPNLEKIVFLDDDIVVQHDLSPLWD 270
Query: 474 IDLSGKVNGAVETCRGGDSWVMSKRFRNYLNF 569
IDL NGAVETCRG DSWVMSK F+NY NF
Sbjct: 271 IDLXXXXNGAVETCRGEDSWVMSKXFKNYFNF 366
Score = 30.4 bits (60), Expect(2) = 1e-044
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3 / +1
Query: 195 QFDWLTQENVPVLESIETQRAARDRY 272
QF WL ++ VPVLE ++ R Y
Sbjct: 1 QFTWLLKDKVPVLEEMKKDHEIRRHY 78
>gb|BF010558.1|BF010558 NXCI_086_A04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_086_A04 5' similar to Arabidopsis
thaliana sequence At5g54690 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 387
Score = 132 bits (283), Expect(2) = 2e-044
Identities = 53/76 (69%), Positives = 60/76 (78%)
Frame = +3 / +3
Query: 294 TSANDSPRVFAAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWD 473
T DSP + A KLQA SP Y ++LNH+RIY+PELFP+L VFLDDD+VV DLSPLWD
Sbjct: 159 TDLIDSPYLMALKLQAQSPKYFSILNHVRIYLPELFPNLEXXVFLDDDIVVXXDLSPLWD 338
Query: 474 IDLSGKVNGAVETCRG 521
IDL GKVNGA ETCRG
Sbjct: 339 IDLQGKVNGAXETCRG 386
Score = 66.6 bits (139), Expect(2) = 2e-044
Identities = 24/47 (51%), Positives = 33/47 (70%)
Frame = +3 / +3
Query: 132 MHSWFALNSLSPAIVEVKGVHQFDWLTQENVPVLESIETQRAARDRY 272
MH+WFAL+ + AI+EVKG+HQF WL ++ VPVLE ++ R Y
Sbjct: 6 MHAWFALHPIPSAIIEVKGLHQFTWLLKDKVPVLEEMKKDHEIRRHY 146
>gb|DT637161.1|DT637161 EST1152092 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH039 3' end, mRNA sequence
Length = 879
Score = 99.6 bits (211), Expect(2) = 7e-044
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = +3 / +1
Query: 345 SPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETC 515
+P Y ++LNH+R Y+PE++P+L KVVFLD DVVVQ DL+PL+ IDL G VNGAVETC
Sbjct: 538 NPKYLSMLNHLRFYIPEVYPALEKVVFLDHDVVVQKDLTPLFSIDLHGNVNGAVETC 708
Score = 97.7 bits (207), Expect(2) = 7e-044
Identities = 38/92 (41%), Positives = 59/92 (64%)
Frame = +3 / +1
Query: 6 HFVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVK 185
HF + SDN+LA SVVV ST++++ PE++VFH++TD+ + A +WFA+N A +EV+
Sbjct: 232 HFCVFSDNVLATSVVVNSTVQNADYPEQLVFHIVTDEINHGATQAWFAMNDYRGAAIEVQ 411
Query: 186 GVHQFDWLTQENVPVLESIETQRAARDRYHGS 281
V F+WL VPVL+ + + + GS
Sbjct: 412 NVDDFNWLNASYVPVLKQLRDEETQSYYFKGS 507
>gb|DR053011.1|DR053011 RTCA1_8_A01.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_8_A01_A029 5', mRNA sequence
Length = 802
Score = 105 bits (225), Expect(2) = 7e-044
Identities = 38/66 (57%), Positives = 54/66 (81%)
Frame = +3 / +3
Query: 324 AAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGA 503
A ++ +P Y ++LNH+R Y+PE++P L++++FLDDDVVVQ DL+ LW+ID+ GKVNGA
Sbjct: 378 APNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGA 557
Query: 504 VETCRG 521
VETC G
Sbjct: 558 VETCFG 575
Score = 91.3 bits (193), Expect(2) = 7e-044
Identities = 37/86 (43%), Positives = 55/86 (63%)
Frame = +3 / +3
Query: 6 HFVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVK 185
H+ + SDN++AASVVV S ++++ +P + VFHV+TDK AM WF + SL+ + VEVK
Sbjct: 81 HYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLAAMQVWFKMRSLNGSHVEVK 260
Query: 186 GVHQFDWLTQENVPVLESIETQRAAR 263
V + +L VPVL +E+ R
Sbjct: 261 AVEDYKFLNSSYVPVLRQLESANLQR 338
>gb|DR692110.1|DR692110 EST1082197 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADI14 3' end, mRNA sequence
Length = 741
Score = 99.6 bits (211), Expect(2) = 7e-044
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = +3 / +2
Query: 345 SPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETC 515
+P Y ++LNH+R Y+PE++P+L KVVFLD DVVVQ DL+PL+ IDL G VNGAVETC
Sbjct: 530 NPKYLSMLNHLRFYIPEVYPALEKVVFLDHDVVVQKDLTPLFSIDLHGNVNGAVETC 700
Score = 97.7 bits (207), Expect(2) = 7e-044
Identities = 38/92 (41%), Positives = 59/92 (64%)
Frame = +3 / +2
Query: 6 HFVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVK 185
HF + SDN+LA SVVV ST++++ PE++VFH++TD+ + A +WFA+N A +EV+
Sbjct: 224 HFCVFSDNVLATSVVVNSTVQNADYPEQLVFHIVTDEINHGATQAWFAMNDYRGAAIEVQ 403
Query: 186 GVHQFDWLTQENVPVLESIETQRAARDRYHGS 281
V F+WL VPVL+ + + + GS
Sbjct: 404 NVDDFNWLNASYVPVLKQLRDEETQSYYFKGS 499
>gb|BG673827.1|BG673827 NXPV_075_F03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_075_F03 5' similar to Arabidopsis
thaliana sequence At3g01040 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 380
Score = 159 bits (342), Expect(2) = 4e-041
Identities = 63/92 (68%), Positives = 71/92 (77%)
Frame = +3 / +3
Query: 294 TSANDSPRVFAAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWD 473
T DSP + A KLQA SP Y ++LNH+RIY+PELFP+L K+VFLDDD+VVQHDLSPLWD
Sbjct: 90 TDLIDSPYLMALKLQAQSPKYFSILNHVRIYLPELFPNLEKIVFLDDDIVVQHDLSPLWD 269
Query: 474 IDLSGKVNGAVETCRGGDSWVMSKRFRNYLNF 569
IDL NGAVETCRG SWVMS NY NF
Sbjct: 270 IDLQXXXNGAVETCRGXXSWVMSXXXXNYFNF 365
Score = 28.1 bits (55), Expect(2) = 4e-041
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3 / +3
Query: 198 FDWLTQENVPVLESIETQRAARDRY 272
F WL ++ VPVLE ++ R Y
Sbjct: 3 FTWLLKDKVPVLEEMKKDHEIRRHY 77
>gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABI03 3' end, mRNA sequence
Length = 866
Score = 107 bits (228), Expect(2) = 1e-039
Identities = 37/64 (57%), Positives = 54/64 (84%)
Frame = +3 / +2
Query: 324 AAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGA 503
++ L+ +P Y ++LNH+R Y+P+++P L+K++FLDDD+VVQ DL+PLW +DL GKVNGA
Sbjct: 272 SSNLKYRNPKYLSMLNHLRFYLPQVYPKLDKILFLDDDIVVQKDLTPLWSVDLHGKVNGA 451
Query: 504 VETC 515
VETC
Sbjct: 452 VETC 463
Score = 75.8 bits (159), Expect(2) = 1e-039
Identities = 32/71 (45%), Positives = 43/71 (60%)
Frame = +3 / +2
Query: 36 AASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVKGVHQFDWLTQ 215
AASVVV STI ++ + E+ VFH++TDK + AM WF LN A + V+ V F WL
Sbjct: 2 AASVVVNSTIMNAKESEKHVFHLVTDKLNFGAMKMWFLLNPPGKAAIHVENVDDFKWLNS 181
Query: 216 ENVPVLESIET 248
PVL +E+
Sbjct: 182 SYCPVLRQLES 214
>gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFX37 3' end, mRNA sequence
Length = 812
Score = 107 bits (228), Expect(2) = 1e-039
Identities = 37/64 (57%), Positives = 54/64 (84%)
Frame = +3 / +1
Query: 324 AAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGA 503
++ L+ +P Y ++LNH+R Y+P+++P L+K++FLDDD+VVQ DL+PLW +DL GKVNGA
Sbjct: 280 SSNLKYRNPKYLSMLNHLRFYLPQVYPKLDKILFLDDDIVVQKDLTPLWSVDLHGKVNGA 459
Query: 504 VETC 515
VETC
Sbjct: 460 VETC 471
Score = 75.8 bits (159), Expect(2) = 1e-039
Identities = 32/71 (45%), Positives = 43/71 (60%)
Frame = +3 / +1
Query: 36 AASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVKGVHQFDWLTQ 215
AASVVV STI ++ + E+ VFH++TDK + AM WF LN A + V+ V F WL
Sbjct: 10 AASVVVNSTIMNAKESEKHVFHLVTDKLNFGAMKMWFLLNPPGKAAIHVENVDDFKWLNS 189
Query: 216 ENVPVLESIET 248
PVL +E+
Sbjct: 190 SYCPVLRQLES 222
>gb|DT633602.1|DT633602 EST1148533 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFW66 3' end, mRNA sequence
Length = 879
Score = 90.4 bits (191), Expect(3) = 3e-038
Identities = 37/86 (43%), Positives = 54/86 (62%)
Frame = +3 / +3
Query: 6 HFVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVK 185
H+ + SDN++AASVVV S ++++ +P + VFHV+TDK AM WF + SL+ + VEVK
Sbjct: 210 HYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLAAMQVWFKMRSLNGSHVEVK 389
Query: 186 GVHQFDWLTQENVPVLESIETQRAAR 263
V + +L VPVL +E R
Sbjct: 390 AVEDYKFLNSSYVPVLRQLEPANLQR 467
Score = 57.4 bits (119), Expect(3) = 3e-038
Identities = 19/34 (55%), Positives = 29/34 (85%)
Frame = +3 / +2
Query: 345 SPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVV 446
+P Y ++LNH+R Y+PE++P ++V+FLDDDVVV
Sbjct: 527 NPKYLSMLNHLRFYLPEMYPKSHRVLFLDDDVVV 628
Score = 48.7 bits (100), Expect(3) = 3e-038
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3 / +3
Query: 438 VVVQHDLSPLWDIDLSGKVNGAVETCRG 521
++ Q DL+ LW+ID+ GKVNGAVETC G
Sbjct: 621 LLFQKDLTGLWEIDMEGKVNGAVETCFG 704
>gb|DR686821.1|DR686821 EST1076899 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABK22 3' end, mRNA sequence
Length = 742
Score = 90.4 bits (191), Expect(3) = 3e-038
Identities = 37/86 (43%), Positives = 54/86 (62%)
Frame = +3 / +1
Query: 6 HFVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVK 185
H+ + SDN++AASVVV S ++++ +P + VFHV+TDK AM WF + SL+ + VEVK
Sbjct: 202 HYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLAAMQVWFKMRSLNGSHVEVK 381
Query: 186 GVHQFDWLTQENVPVLESIETQRAAR 263
V + +L VPVL +E R
Sbjct: 382 AVEDYKFLNSSYVPVLRQLEPANLQR 459
Score = 57.4 bits (119), Expect(3) = 3e-038
Identities = 19/34 (55%), Positives = 29/34 (85%)
Frame = +3 / +3
Query: 345 SPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVV 446
+P Y ++LNH+R Y+PE++P ++V+FLDDDVVV
Sbjct: 519 NPKYLSMLNHLRFYLPEMYPKSHRVLFLDDDVVV 620
Score = 48.7 bits (100), Expect(3) = 3e-038
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3 / +1
Query: 438 VVVQHDLSPLWDIDLSGKVNGAVETCRG 521
++ Q DL+ LW+ID+ GKVNGAVETC G
Sbjct: 613 LLFQKDLTGLWEIDMEGKVNGAVETCFG 696
>gb|BQ107024.1|BQ107024 NXLV085_F11_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV085_F11 5' similar to Arabidopsis thaliana
sequence At2g20807 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 732
Score = 102 bits (218), Expect(2) = 1e-029
Identities = 39/57 (68%), Positives = 49/57 (85%)
Frame = +3 / +1
Query: 345 SPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETC 515
+P Y ++LNH+R Y+PE++P+L KVVFLDDDVVVQ DL+PL+ IDL G VNGAVETC
Sbjct: 199 NPKYLSMLNHLRFYIPEVYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETC 369
Score = 46.9 bits (96), Expect(2) = 1e-029
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3 / +1
Query: 123 YPAMHSWFALNSLSPAIVEVKGVHQFDWLTQENVPVLESIETQRAARDRYHG 278
+P +WFA+N A +EV+ V F+WL VPVL+ + + + G
Sbjct: 10 WPGTQAWFAMNDYRGATIEVQNVDDFNWLNASYVPVLKQLRDEETQSYYFKG 165
>gb|BE458150.1|BE458150 NXCI_008_C03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_008_C03 5' similar to Arabidopsis
thaliana sequence At3g01040 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 453
Score = 127 bits (271), Expect = 8e-029
Identities = 50/75 (66%), Positives = 62/75 (82%)
Frame = +3 / +1
Query: 6 HFVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVK 185
HFVLA+DN+ AASVVV S +++S KPE+IVFHVIT KKTY AMHSW AL+ L P+++ K
Sbjct: 229 HFVLATDNVFAASVVVASAVKASSKPEKIVFHVITXKKTYAAMHSWXALHHLPPSVIXXK 408
Query: 186 GVHQFDWLTQENVPV 230
GVHQFD T++NVPV
Sbjct: 409 GVHQFDXXTKDNVPV 453
>gb|BQ697965.1|BQ697965 NXPV_063_A07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_063_A07 5' similar to Arabidopsis
thaliana sequence At3g01040 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 300
Score = 115 bits (245), Expect(2) = 1e-028
Identities = 46/70 (65%), Positives = 54/70 (77%)
Frame = +3 / +1
Query: 294 TSANDSPRVFAAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWD 473
T DSP + A KLQA SP Y ++LNH+RIY+PELFP+L K+VFL DD+VV DLSPLWD
Sbjct: 91 TDLIDSPYLMALKLQAQSPKYFSILNHVRIYLPELFPNLEKIVFLXDDIVVXXDLSPLWD 270
Query: 474 IDLSGKVNGA 503
I L GK NGA
Sbjct: 271 IXLXGKXNGA 300
Score = 30.4 bits (60), Expect(2) = 1e-028
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3 / +1
Query: 195 QFDWLTQENVPVLESIETQRAARDRY 272
QF WL ++ VPVLE ++ R Y
Sbjct: 1 QFTWLLKDKVPVLEEMKKDHEIRRHY 78
>gb|BX254765.1|BX254765 BX254765 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP104A12, mRNA sequence
Length = 629
Score = 122 bits (260), Expect = 3e-027
Identities = 46/67 (68%), Positives = 58/67 (86%)
Frame = +3 / +2
Query: 6 HFVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVK 185
HFVLA+DN+LAASVVV S +R+S KP+++VFHVITDKKTY MH+WFAL+ + AI+EVK
Sbjct: 428 HFVLATDNVLAASVVVLSAVRNSAKPDKVVFHVITDKKTYAPMHAWFALHPIPSAIIEVK 607
Query: 186 GVHQFDW 206
G+HQF W
Sbjct: 608 GLHQFTW 628
>gb|BG317381.1|BG317381 NXPV_001_B01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_001_B01 5' similar to Arabidopsis
thaliana sequence At3g01040 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 283
Score = 105 bits (223), Expect(2) = 1e-025
Identities = 41/60 (68%), Positives = 48/60 (80%)
Frame = +3 / +1
Query: 294 TSANDSPRVFAAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWD 473
T DSP + A KLQA SP Y ++LNH+RIY+PELFP+L K VFL DD+VVQHDLSPLWD
Sbjct: 91 TDLIDSPYLMALKLQAQSPKYFSILNHVRIYLPELFPNLEKXVFLXDDIVVQHDLSPLWD 270
Score = 30.4 bits (60), Expect(2) = 1e-025
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3 / +1
Query: 195 QFDWLTQENVPVLESIETQRAARDRY 272
QF WL ++ VPVLE ++ R Y
Sbjct: 1 QFTWLLKDKVPVLEEMKKDHEIRRHY 78
>gb|BQ197959.1|BQ197959 NXLV123_C04_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV123_C04 5' similar to Arabidopsis thaliana
sequence At3g25140 glycosyl transferase, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 442
Score = 99.1 bits (210), Expect(2) = 1e-023
Identities = 35/66 (53%), Positives = 51/66 (77%)
Frame = +3 / +1
Query: 324 AAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGA 503
A ++ +P Y ++LNH+R Y+PE++P ++++FLDDDVVVQ DL+ LW+I + GKVNGA
Sbjct: 214 APNMKFRNPKYLSMLNHLRFYLPEMYPKFHRILFLDDDVVVQKDLTGLWEIXMEGKVNGA 393
Query: 504 VETCRG 521
ETC G
Sbjct: 394 AETCFG 411
Score = 30.4 bits (60), Expect(2) = 1e-023
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3 / +1
Query: 156 SLSPAIVEVKGVHQFDWLTQENVPVLESIETQRAAR 263
SL + VEVK V + +L VPVL +E+ R
Sbjct: 67 SLXGSHVEVKAVEDYKFLNSSYVPVLRQLESANLQR 174
>gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_C05_A029 5', mRNA sequence
Length = 912
Score = 102 bits (218), Expect(2) = 5e-023
Identities = 39/57 (68%), Positives = 49/57 (85%)
Frame = +3 / -1
Query: 345 SPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETC 515
+P Y ++LNH+R Y+PE++P+L KVVFLDDDVVVQ DL+PL+ IDL G VNGAVETC
Sbjct: 792 NPKYLSMLNHLRFYIPEVYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETC 622
Score = 24.4 bits (47), Expect(2) = 5e-023
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3 / -1
Query: 198 FDWLTQENVPVLESIETQRAARDRYHGS 281
F+WL VPVL+ + + + GS
Sbjct: 906 FNWLNASYVPVLKQLRDEETQSYYFKGS 823
>gb|AW736910.1|AW736910 NXNV_081_D07_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_081_D07 5' similar to Arabidopsis thaliana
sequence At3g01040 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 216
Score = 105 bits (225), Expect = 2e-022
Identities = 42/62 (67%), Positives = 49/62 (79%)
Frame = +3 / +2
Query: 294 TSANDSPRVFAAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWD 473
T DSP + A KLQA SP Y ++LNH+RIY+PELFP+L VVFL D+VVQHDLSPLWD
Sbjct: 29 TDLIDSPYLMALKLQAQSPKYFSILNHVRIYLPELFPNLEXVVFLXXDIVVQHDLSPLWD 208
Query: 474 ID 479
ID
Sbjct: 209 ID 214
>gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_E05_A029 3', mRNA sequence
Length = 820
Score = 105 bits (225), Expect = 2e-022
Identities = 38/66 (57%), Positives = 54/66 (81%)
Frame = +3 / +3
Query: 324 AAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGA 503
A ++ +P Y ++LNH+R Y+PE++P L++++FLDDDVVVQ DL+ LW+ID+ GKVNGA
Sbjct: 6 APNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGA 185
Query: 504 VETCRG 521
VETC G
Sbjct: 186 VETCFG 203
>gb|DR161477.1|DR161477 RTFE1_12_B06.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_12_B06_A029 3', mRNA sequence
Length = 482
Score = 105 bits (224), Expect = 3e-022
Identities = 38/66 (57%), Positives = 54/66 (81%)
Frame = +3 / -2
Query: 324 AAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGA 503
A ++ +P Y ++LNH+R Y+PE++P L++++FLDDDVVVQ DL+ LW+ID+ GKVNGA
Sbjct: 418 APNMKFMNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGA 239
Query: 504 VETCRG 521
VETC G
Sbjct: 238 VETCFG 221
>gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACF91 3' end, mRNA sequence
Length = 854
Score = 105 bits (223), Expect = 3e-022
Identities = 37/59 (62%), Positives = 51/59 (86%)
Frame = +3 / +2
Query: 345 SPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETCRG 521
+P Y ++LNH+R Y+PE++P L++++FLDDDVVVQ DL+ LW+ID+ GKVNGAVETC G
Sbjct: 11 NPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFG 187
>gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGF84 3' end, mRNA sequence
Length = 768
Score = 105 bits (223), Expect = 3e-022
Identities = 37/59 (62%), Positives = 51/59 (86%)
Frame = +3 / +1
Query: 345 SPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETCRG 521
+P Y ++LNH+R Y+PE++P L++++FLDDDVVVQ DL+ LW+ID+ GKVNGAVETC G
Sbjct: 19 NPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFG 195
>gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_29_B07_A029 3', mRNA sequence
Length = 688
Score = 104 bits (221), Expect = 7e-022
Identities = 40/61 (65%), Positives = 52/61 (85%)
Frame = +3 / +2
Query: 333 LQAGSPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVET 512
L+ +P Y ++LNH+R Y+PE++P+L+KVVFLDDDVVVQ DL+PL+ IDL G VNGAVET
Sbjct: 23 LKFHNPKYLSMLNHLRFYIPEIYPALDKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVET 202
Query: 513 C 515
C
Sbjct: 203 C 205
>gb|CX713339.1|CX713339 RTPQ1_8_B07.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_B07_A032 5', mRNA sequence
Length = 657
Score = 91.3 bits (193), Expect(2) = 9e-022
Identities = 37/86 (43%), Positives = 55/86 (63%)
Frame = +3 / +2
Query: 6 HFVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVK 185
H+ + SDN++AASVVV S ++++ +P + VFHV+TDK AM WF + SL+ + VEVK
Sbjct: 263 HYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLAAMQVWFKMRSLNGSHVEVK 442
Query: 186 GVHQFDWLTQENVPVLESIETQRAAR 263
V + +L VPVL +E+ R
Sbjct: 443 AVEDYKFLNSSYVPVLRQLESANLQR 520
Score = 31.8 bits (63), Expect(2) = 9e-022
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3 / +2
Query: 324 AAKLQAGSPTYTNVLNHIRIYMPE 395
A ++ +P Y ++LNH+R Y+PE
Sbjct: 560 APNMKFRNPKYLSMLNHLRFYLPE 631
>gb|CD017969.1|CD017969 NXCI_152_H11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_152_H11 5' similar to Arabidopsis
thaliana sequence At3g01040 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 146
Score = 100 bits (213), Expect = 8e-021
Identities = 38/44 (86%), Positives = 42/44 (95%)
Frame = +3 / +2
Query: 384 YMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETC 515
Y+PELFP+L+KVVFLDDD+VVQHDLSPLWDIDL GK NGAVETC
Sbjct: 2 YLPELFPNLHKVVFLDDDIVVQHDLSPLWDIDLHGKXNGAVETC 133
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 303,771,042
Number of Sequences: 355925
Number of extensions: 4264109
Number of successful extensions: 40280
Number of sequences better than 1.0e-020: 40
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7489752660
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)