TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3562100.2.1
(759 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX250828.1|BX250828 BX250828 Pinus pinaster differenciat... 188 5e-047
gb|BX682353.2|BX682353 BX682353 Pinus pinaster differenciat... 188 5e-047
gb|DN626792.1|DN626792 EST977608 Subtracted pine embryo lib... 188 5e-047
gb|DR020043.1|DR020043 STRS1_34_F06.b1_A034 Shoot tip pitch... 188 5e-047
gb|DR020121.1|DR020121 STRS1_34_F06.g1_A034 Shoot tip pitch... 188 5e-047
gb|DR070204.1|DR070204 RTDK1_12_A01.b1_A029 Roots, dark Pin... 188 5e-047
gb|DR695299.1|DR695299 EST1085392 Normalized pine embryo li... 188 5e-047
gb|DR179313.1|DR179313 RTMNUT1_21_G02.b2_A029 Roots minus m... 187 1e-046
gb|DR386262.1|DR386262 RTHG1_14_A08.b1_A029 Roots plus adde... 187 1e-046
gb|DR688541.1|DR688541 EST1078626 Normalized pine embryo li... 187 1e-046
gb|AI813230.1|AI813230 3E5 Pine Lambda Zap Xylem library Pi... 179 2e-044
gb|DR079445.1|DR079445 RTFEPL1_11_G04.b1_A029 Roots plus ad... 172 2e-042
gb|CF473586.1|CF473586 RTWW2_3_D10.g1_A021 Well-watered lob... 171 4e-042
gb|DR683351.1|DR683351 EST1073427 Normalized pine embryo li... 171 4e-042
gb|CO159685.1|CO159685 FLD1_15_D05.b1_A029 Root flooded Pin... 171 5e-042
gb|CO370563.1|CO370563 RTK1_68_E06.g1_A029 Roots minus pota... 171 5e-042
gb|DR160155.1|DR160155 RTFE1_4_D07.b1_A029 Roots minus iron... 166 2e-040
gb|BQ697926.1|BQ697926 NXPV_062_E11_F NXPV (Nsf Xylem Plani... 162 3e-039
gb|BX249114.1|BX249114 BX249114 Pinus pinaster differenciat... 147 7e-035
gb|BI398034.1|BI398034 NXPV_113_F09_F NXPV (Nsf Xylem Plani... 143 2e-033
gb|DR688931.1|DR688931 EST1079017 Normalized pine embryo li... 125 1e-029
>gb|BX250828.1|BX250828 BX250828 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP041H04, mRNA sequence
Length = 574
Score = 188 bits (404), Expect = 5e-047
Identities = 79/116 (68%), Positives = 90/116 (77%)
Frame = +3 / +3
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPRVGEYAFGFITS++VLQ + GDEELCSVYVPTNH
Sbjct: 48 SKQISAAISPDQNTRAFKEVAIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNH 227
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDR 350
LYIGDIFLVNS +IIRPNLS+REGIEI+VS GM+MPQ+I LE T R++R
Sbjct: 228 LYIGDIFLVNSKDIIRPNLSVREGIEIVVSVGMSMPQLISVLERTSETVDRTRMNR 395
Score = 127 bits (273), Expect = 6e-029
Identities = 65/113 (57%), Positives = 73/113 (64%)
Frame = -3 / -1
Query: 370 YSHTVLTLSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSP 191
Y + L R V S I CGI IP +T ISMPSR DK G +IS E T+KMSP
Sbjct: 415 YKRQIHPLFIRVLSTVSDVLSKTEINCGIDIPTDTTISMPSRTDKFGRMISLELTRKMSP 236
Query: 190 IYK*LVGT*TLHNSSSPLSV*RTMVDVMNPNAYSPTRG*LMIATSLNAXXFXS 32
I +* VGT*TL +SSSPLS *RT DV+ P AYSPTRG* +IATSL A F S
Sbjct: 235 I*R*FVGT*TLQSSSSPLST*RTSDDVIKPKAYSPTRG*RIIATSLKALVFWS 77
>gb|BX682353.2|BX682353 BX682353 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 115D08 similar to P0677H08.7 protein, mRNA
sequence
Length = 627
Score = 188 bits (404), Expect = 5e-047
Identities = 79/116 (68%), Positives = 90/116 (77%)
Frame = +3 / +2
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPRVGEYAFGFITS++VLQ + GDEELCSVYVPTNH
Sbjct: 62 SKQISAAISPDQNTRAFKEVAIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNH 241
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDR 350
LYIGDIFLVNS +IIRPNLS+REGIEI+VS GM+MPQ+I LE T R++R
Sbjct: 242 LYIGDIFLVNSKDIIRPNLSVREGIEIVVSVGMSMPQLISVLERTSETVDRTRMNR 409
Score = 127 bits (273), Expect = 6e-029
Identities = 65/113 (57%), Positives = 73/113 (64%)
Frame = -3 / -1
Query: 370 YSHTVLTLSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSP 191
Y + L R V S I CGI IP +T ISMPSR DK G +IS E T+KMSP
Sbjct: 429 YKRQIHPLFIRVLSTVSDVLSKTEINCGIDIPTDTTISMPSRTDKFGRMISLELTRKMSP 250
Query: 190 IYK*LVGT*TLHNSSSPLSV*RTMVDVMNPNAYSPTRG*LMIATSLNAXXFXS 32
I +* VGT*TL +SSSPLS *RT DV+ P AYSPTRG* +IATSL A F S
Sbjct: 249 I*R*FVGT*TLQSSSSPLST*RTSDDVIKPKAYSPTRG*RIIATSLKALVFWS 91
>gb|DN626792.1|DN626792 EST977608 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAA802, mRNA sequence
Length = 864
Score = 188 bits (404), Expect = 5e-047
Identities = 79/116 (68%), Positives = 90/116 (77%)
Frame = +3 / -3
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPRVGEYAFGFITS++VLQ + GDEELCSVYVPTNH
Sbjct: 568 SKQISAAISPDQNTRAFKEVAIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNH 389
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDR 350
LYIGDIFLVNS +IIRPNLS+REGIEI+VS GM+MPQ+I LE T R++R
Sbjct: 388 LYIGDIFLVNSKDIIRPNLSVREGIEIVVSVGMSMPQLISVLERTSETVDRTRMNR 221
Score = 128 bits (275), Expect = 3e-029
Identities = 65/113 (57%), Positives = 73/113 (64%)
Frame = -3 / +3
Query: 370 YSHTVLTLSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSP 191
Y + L R V S I CGI IP +T ISMPSR DK G +IS E T+KMSP
Sbjct: 201 YKRQIYPLFIRVLSTVSDVLSKTEINCGIDIPTDTTISMPSRTDKFGRMISLELTRKMSP 380
Query: 190 IYK*LVGT*TLHNSSSPLSV*RTMVDVMNPNAYSPTRG*LMIATSLNAXXFXS 32
I +* VGT*TL +SSSPLS *RT DV+ P AYSPTRG* +IATSL A F S
Sbjct: 381 I*R*FVGT*TLQSSSSPLST*RTSDDVIKPKAYSPTRG*RIIATSLKALVFWS 539
>gb|DR020043.1|DR020043 STRS1_34_F06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_34_F06_A034 3', mRNA sequence
Length = 867
Score = 188 bits (404), Expect = 5e-047
Identities = 79/116 (68%), Positives = 90/116 (77%)
Frame = +3 / +2
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPRVGEYAFGFITS++VLQ + GDEELCSVYVPTNH
Sbjct: 203 SKQISAAISPDQNTRAFKEVAIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNH 382
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDR 350
LYIGDIFLVNS +IIRPNLS+REGIEI+VS GM+MPQ+I LE T R++R
Sbjct: 383 LYIGDIFLVNSKDIIRPNLSVREGIEIVVSVGMSMPQLISVLERTSETVDRTRMNR 550
Score = 128 bits (275), Expect = 3e-029
Identities = 65/113 (57%), Positives = 73/113 (64%)
Frame = -3 / -1
Query: 370 YSHTVLTLSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSP 191
Y + L R V S I CGI IP +T ISMPSR DK G +IS E T+KMSP
Sbjct: 570 YKRQIYPLFIRVLSTVSDVLSKTEINCGIDIPTDTTISMPSRTDKFGRMISLELTRKMSP 391
Query: 190 IYK*LVGT*TLHNSSSPLSV*RTMVDVMNPNAYSPTRG*LMIATSLNAXXFXS 32
I +* VGT*TL +SSSPLS *RT DV+ P AYSPTRG* +IATSL A F S
Sbjct: 390 I*R*FVGT*TLQSSSSPLST*RTSDDVIKPKAYSPTRG*RIIATSLKALVFWS 232
>gb|DR020121.1|DR020121 STRS1_34_F06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_34_F06_A034 5', mRNA sequence
Length = 781
Score = 188 bits (404), Expect = 5e-047
Identities = 79/116 (68%), Positives = 90/116 (77%)
Frame = +3 / +2
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPRVGEYAFGFITS++VLQ + GDEELCSVYVPTNH
Sbjct: 428 SKQISAAISPDQNTRAFKEVAIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNH 607
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDR 350
LYIGDIFLVNS +IIRPNLS+REGIEI+VS GM+MPQ+I LE T R++R
Sbjct: 608 LYIGDIFLVNSKDIIRPNLSVREGIEIVVSVGMSMPQLISVLERTSETVDRTRMNR 775
Score = 127 bits (271), Expect = 1e-028
Identities = 61/93 (65%), Positives = 68/93 (73%)
Frame = -3 / -2
Query: 310 SSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV 131
S I CGI IP +T ISMPSR DK G +IS E T+KMSPI +* VGT*TL +SSSPLS
Sbjct: 735 SKTEINCGIDIPTDTTISMPSRTDKFGRMISLELTRKMSPI*R*FVGT*TLQSSSSPLST 556
Query: 130 *RTMVDVMNPNAYSPTRG*LMIATSLNAXXFXS 32
*RT DV+ P AYSPTRG* +IATSL A F S
Sbjct: 555 *RTSDDVIKPKAYSPTRG*RIIATSLKALVFWS 457
>gb|DR070204.1|DR070204 RTDK1_12_A01.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_12_A01_A029 3', mRNA sequence
Length = 857
Score = 188 bits (404), Expect = 5e-047
Identities = 79/116 (68%), Positives = 90/116 (77%)
Frame = +3 / +1
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPRVGEYAFGFITS++VLQ + GDEELCSVYVPTNH
Sbjct: 49 SKQISAAISPDQNTRAFKEVAIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNH 228
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDR 350
LYIGDIFLVNS +IIRPNLS+REGIEI+VS GM+MPQ+I LE T R++R
Sbjct: 229 LYIGDIFLVNSKDIIRPNLSVREGIEIVVSVGMSMPQLISVLERTSETVDRTRMNR 396
Score = 127 bits (271), Expect = 1e-028
Identities = 61/93 (65%), Positives = 68/93 (73%)
Frame = -3 / -1
Query: 310 SSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV 131
S I CGI IP +T ISMPSR DK G +IS E T+KMSPI +* VGT*TL +SSSPLS
Sbjct: 356 SKTEINCGIDIPTDTTISMPSRTDKFGRMISLELTRKMSPI*R*FVGT*TLQSSSSPLST 177
Query: 130 *RTMVDVMNPNAYSPTRG*LMIATSLNAXXFXS 32
*RT DV+ P AYSPTRG* +IATSL A F S
Sbjct: 176 *RTSDDVIKPKAYSPTRG*RIIATSLKALVFWS 78
>gb|DR695299.1|DR695299 EST1085392 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEN33 3' end, mRNA sequence
Length = 873
Score = 188 bits (404), Expect = 5e-047
Identities = 79/116 (68%), Positives = 90/116 (77%)
Frame = +3 / +3
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPRVGEYAFGFITS++VLQ + GDEELCSVYVPTNH
Sbjct: 519 SKQISAAISPDQNTRAFKEVAIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNH 698
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDR 350
LYIGDIFLVNS +IIRPNLS+REGIEI+VS GM+MPQ+I LE T R++R
Sbjct: 699 LYIGDIFLVNSKDIIRPNLSVREGIEIVVSVGMSMPQLISVLERTSETVDRTRMNR 866
Score = 127 bits (271), Expect = 1e-028
Identities = 61/93 (65%), Positives = 68/93 (73%)
Frame = -3 / -3
Query: 310 SSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV 131
S I CGI IP +T ISMPSR DK G +IS E T+KMSPI +* VGT*TL +SSSPLS
Sbjct: 826 SKTEINCGIDIPTDTTISMPSRTDKFGRMISLELTRKMSPI*R*FVGT*TLQSSSSPLST 647
Query: 130 *RTMVDVMNPNAYSPTRG*LMIATSLNAXXFXS 32
*RT DV+ P AYSPTRG* +IATSL A F S
Sbjct: 646 *RTSDDVIKPKAYSPTRG*RIIATSLKALVFWS 548
>gb|DR179313.1|DR179313 RTMNUT1_21_G02.b2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_21_G02_A029 3', mRNA sequence
Length = 698
Score = 187 bits (402), Expect = 1e-046
Identities = 78/106 (73%), Positives = 88/106 (83%)
Frame = +3 / +3
Query: 33 DXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNHLYIGDIFLVN 212
D N AFKEVAII HPRVGEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGDIFLVN
Sbjct: 27 DQNTRAFKEVAIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNHLYIGDIFLVN 206
Query: 213 SAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDR 350
S +IIRPNLS+REGIEI+VS GM+MPQ+I LE T R++R
Sbjct: 207 SKDIIRPNLSVREGIEIVVSVGMSMPQLISVLERTSETVDRTRMNR 344
Score = 128 bits (275), Expect = 3e-029
Identities = 65/113 (57%), Positives = 73/113 (64%)
Frame = -3 / -2
Query: 370 YSHTVLTLSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSP 191
Y + L R V S I CGI IP +T ISMPSR DK G +IS E T+KMSP
Sbjct: 364 YKRQIYPLFIRVLSTVSDVLSKTEINCGIDIPTDTTISMPSRTDKFGRMISLELTRKMSP 185
Query: 190 IYK*LVGT*TLHNSSSPLSV*RTMVDVMNPNAYSPTRG*LMIATSLNAXXFXS 32
I +* VGT*TL +SSSPLS *RT DV+ P AYSPTRG* +IATSL A F S
Sbjct: 184 I*R*FVGT*TLQSSSSPLST*RTSDDVIKPKAYSPTRG*RIIATSLKALVFWS 26
>gb|DR386262.1|DR386262 RTHG1_14_A08.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_14_A08_A029 3', mRNA sequence
Length = 663
Score = 187 bits (402), Expect = 1e-046
Identities = 78/106 (73%), Positives = 88/106 (83%)
Frame = +3 / +3
Query: 33 DXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNHLYIGDIFLVN 212
D N AFKEVAII HPRVGEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGDIFLVN
Sbjct: 18 DQNTRAFKEVAIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNHLYIGDIFLVN 197
Query: 213 SAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDR 350
S +IIRPNLS+REGIEI+VS GM+MPQ+I LE T R++R
Sbjct: 198 SKDIIRPNLSVREGIEIVVSVGMSMPQLISVLERTSETVDRTRMNR 335
Score = 128 bits (275), Expect = 3e-029
Identities = 65/113 (57%), Positives = 73/113 (64%)
Frame = -3 / -3
Query: 370 YSHTVLTLSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSP 191
Y + L R V S I CGI IP +T ISMPSR DK G +IS E T+KMSP
Sbjct: 355 YKRQIYPLFIRVLSTVSDVLSKTEINCGIDIPTDTTISMPSRTDKFGRMISLELTRKMSP 176
Query: 190 IYK*LVGT*TLHNSSSPLSV*RTMVDVMNPNAYSPTRG*LMIATSLNAXXFXS 32
I +* VGT*TL +SSSPLS *RT DV+ P AYSPTRG* +IATSL A F S
Sbjct: 175 I*R*FVGT*TLQSSSSPLST*RTSDDVIKPKAYSPTRG*RIIATSLKALVFWS 17
>gb|DR688541.1|DR688541 EST1078626 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC757 3' end, mRNA sequence
Length = 906
Score = 187 bits (402), Expect = 1e-046
Identities = 79/116 (68%), Positives = 90/116 (77%)
Frame = +3 / +1
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPRVGEYAFGFITS++VLQ + GDEELCSVYVPTNH
Sbjct: 520 SKQISAAISPDQNTRAFKEVAIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNH 699
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDR 350
LYIGDIFLVNS +IIRPNLS+REGIEI+VS GM+MPQ+I LE T R++R
Sbjct: 700 LYIGDIFLVNSKDIIRPNLSVREGIEIVVSVGMSMPQLISVLERTSETVGRTRMNR 867
Score = 127 bits (271), Expect = 1e-028
Identities = 61/93 (65%), Positives = 68/93 (73%)
Frame = -3 / -2
Query: 310 SSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV 131
S I CGI IP +T ISMPSR DK G +IS E T+KMSPI +* VGT*TL +SSSPLS
Sbjct: 827 SKTEINCGIDIPTDTTISMPSRTDKFGRMISLELTRKMSPI*R*FVGT*TLQSSSSPLST 648
Query: 130 *RTMVDVMNPNAYSPTRG*LMIATSLNAXXFXS 32
*RT DV+ P AYSPTRG* +IATSL A F S
Sbjct: 647 *RTSDDVIKPKAYSPTRG*RIIATSLKALVFWS 549
>gb|AI813230.1|AI813230 3E5 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 771
Score = 179 bits (386), Expect = 2e-044
Identities = 74/99 (74%), Positives = 83/99 (83%)
Frame = +3 / +2
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPRVGEYAFGFITS++VLQ + GDEELCSVYVPTNH
Sbjct: 467 SKQISAAISPDQNTRAFKEVAIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNH 646
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVI 299
LYIGDIFLVNS +IIRPNLS+REGIEI+VS GM+MPQ+I
Sbjct: 647 LYIGDIFLVNSKDIIRPNLSVREGIEIVVSVGMSMPQLI 763
Score = 126 bits (270), Expect = 2e-028
Identities = 60/89 (67%), Positives = 67/89 (75%)
Frame = -3 / -1
Query: 298 ITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV*RTM 119
I CGI IP +T ISMPSR DK G +IS E T+KMSPI +* VGT*TL +SSSPLS *RT
Sbjct: 762 INCGIDIPTDTTISMPSRTDKFGRMISLELTRKMSPI*R*FVGT*TLQSSSSPLST*RTS 583
Query: 118 VDVMNPNAYSPTRG*LMIATSLNAXXFXS 32
DV+ P AYSPTRG* +IATSL A F S
Sbjct: 582 DDVIKPKAYSPTRG*RIIATSLKALVFWS 496
>gb|DR079445.1|DR079445 RTFEPL1_11_G04.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_11_G04_A029 3', mRNA sequence
Length = 903
Score = 172 bits (371), Expect = 2e-042
Identities = 72/126 (57%), Positives = 92/126 (73%)
Frame = +3 / -1
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPR+GEYAFGFITS++ LQ D G+EEL VYVPTNH
Sbjct: 636 SKQISAAISPDRNTQAFKEVAIIRHPRMGEYAFGFITSSVALQNDVGEEELFCVYVPTNH 457
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDRVRTV 362
LYIGDIFL+NS ++IRPNLS+REGIEI++SGGM+MP+V+ S++ + + +R V
Sbjct: 456 LYIGDIFLINSRDVIRPNLSVREGIEIVLSGGMSMPRVLSSMDRSAIQVDRSMANRGLNV 277
Query: 363 *LYEAC 380
* +C
Sbjct: 276 *KLSSC 259
Score = 114 bits (244), Expect = 6e-025
Identities = 55/93 (59%), Positives = 63/93 (67%)
Frame = -3 / +2
Query: 310 SSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV 131
S D T GI IPP+ ISMPSR DK GLI S E + MSP+Y+ VGT T +SSSP S
Sbjct: 329 SIDESTLGIDIPPDKTISMPSRTDKFGLITSLELIRNMSPMYRWFVGTYTQKSSSSPTSF 508
Query: 130 *RTMVDVMNPNAYSPTRG*LMIATSLNAXXFXS 32
*R +V+NP AYSP RG L+IATSLNA F S
Sbjct: 509 *RATEEVINPKAYSPMRGCLIIATSLNAWVFRS 607
>gb|CF473586.1|CF473586 RTWW2_3_D10.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_3_D10_A021 5', mRNA sequence
Length = 734
Score = 171 bits (369), Expect = 4e-042
Identities = 71/116 (61%), Positives = 90/116 (77%)
Frame = +3 / +3
Query: 33 DXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNHLYIGDIFLVN 212
D N AFKEVAII HPR+GEYAFGFITS++ LQ D G+EEL VYVPTNHLYIGDIFL+N
Sbjct: 12 DRNTLAFKEVAIIRHPRMGEYAFGFITSSVALQNDVGEEELFCVYVPTNHLYIGDIFLIN 191
Query: 213 SAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDRVRTV*LYEAC 380
S ++IRPNLS+REGIEI++SGGM+MP+V+ S++ + + +R V* +C
Sbjct: 192 SRDVIRPNLSVREGIEIVLSGGMSMPRVLSSMDRSAIQVDRSMANRGLNV*KLSSC 359
Score = 115 bits (245), Expect = 5e-025
Identities = 55/93 (59%), Positives = 63/93 (67%)
Frame = -3 / -2
Query: 310 SSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV 131
S D T GI IPP+ ISMPSR DK GLI S E + MSP+Y+ VGT T +SSSP S
Sbjct: 289 SIDESTLGIDIPPDKTISMPSRTDKFGLITSLELIRNMSPMYRWFVGTYTQKSSSSPTSF 110
Query: 130 *RTMVDVMNPNAYSPTRG*LMIATSLNAXXFXS 32
*R +V+NP AYSP RG L+IATSLNA F S
Sbjct: 109 *RATEEVINPKAYSPMRGCLIIATSLNAKVFRS 11
>gb|DR683351.1|DR683351 EST1073427 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAG18 3' end, mRNA sequence
Length = 753
Score = 171 bits (369), Expect = 4e-042
Identities = 71/95 (74%), Positives = 79/95 (83%)
Frame = +3 / +1
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPRVGEYAFGFITS++VLQ + GDEELCSVYVPTNH
Sbjct: 469 SKQISAAISPDQNTRAFKEVAIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNH 648
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTM 287
LYIGDIFLVNS +IIRPNLS+REGIEI+VS GM+M
Sbjct: 649 LYIGDIFLVNSKDIIRPNLSVREGIEIVVSVGMSM 753
Score = 117 bits (251), Expect = 7e-026
Identities = 57/85 (67%), Positives = 64/85 (75%)
Frame = -3 / -2
Query: 286 IVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV*RTMVDVM 107
I IP +T ISMPSR DK G +IS E T+KMSPI +* VGT*TL +SSSPLS *RT DV+
Sbjct: 752 IDIPTDTTISMPSRTDKFGRMISLELTRKMSPI*R*FVGT*TLQSSSSPLST*RTSDDVI 573
Query: 106 NPNAYSPTRG*LMIATSLNAXXFXS 32
P AYSPTRG* +IATSL A F S
Sbjct: 572 KPKAYSPTRG*RIIATSLKALVFWS 498
>gb|CO159685.1|CO159685 FLD1_15_D05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_15_D05_A029 3', mRNA sequence
Length = 754
Score = 171 bits (368), Expect = 5e-042
Identities = 68/103 (66%), Positives = 84/103 (81%)
Frame = +3 / -3
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPR+GEYAFGFITS++ LQ D G+EEL VYVPTNH
Sbjct: 626 SKQISAAISPDRNTQAFKEVAIIRHPRMGEYAFGFITSSVALQNDVGEEELFCVYVPTNH 447
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLE 311
LYIGDIFL+NS ++IRPNLS+REGIEI++SGGM+MP+V+ S++
Sbjct: 446 LYIGDIFLINSRDVIRPNLSVREGIEIVLSGGMSMPRVLSSMD 318
Score = 114 bits (244), Expect = 6e-025
Identities = 55/93 (59%), Positives = 63/93 (67%)
Frame = -3 / +1
Query: 310 SSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV 131
S D T GI IPP+ ISMPSR DK GLI S E + MSP+Y+ VGT T +SSSP S
Sbjct: 319 SIDESTLGIDIPPDKTISMPSRTDKFGLITSLELIRNMSPMYRWFVGTYTQKSSSSPTSF 498
Query: 130 *RTMVDVMNPNAYSPTRG*LMIATSLNAXXFXS 32
*R +V+NP AYSP RG L+IATSLNA F S
Sbjct: 499 *RATEEVINPKAYSPMRGCLIIATSLNAWVFRS 597
>gb|CO370563.1|CO370563 RTK1_68_E06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_68_E06_A029 5', mRNA sequence
Length = 774
Score = 171 bits (368), Expect = 5e-042
Identities = 68/103 (66%), Positives = 84/103 (81%)
Frame = +3 / -3
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPR+GEYAFGFITS++ LQ D G+EEL VYVPTNH
Sbjct: 655 SKQISAAISPDRNTQAFKEVAIIRHPRMGEYAFGFITSSVALQNDVGEEELFCVYVPTNH 476
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLE 311
LYIGDIFL+NS ++IRPNLS+REGIEI++SGGM+MP+V+ S++
Sbjct: 475 LYIGDIFLINSRDVIRPNLSVREGIEIVLSGGMSMPRVLSSMD 347
Score = 114 bits (244), Expect = 6e-025
Identities = 55/93 (59%), Positives = 63/93 (67%)
Frame = -3 / +3
Query: 310 SSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV 131
S D T GI IPP+ ISMPSR DK GLI S E + MSP+Y+ VGT T +SSSP S
Sbjct: 348 SIDESTLGIDIPPDKTISMPSRTDKFGLITSLELIRNMSPMYRWFVGTYTQKSSSSPTSF 527
Query: 130 *RTMVDVMNPNAYSPTRG*LMIATSLNAXXFXS 32
*R +V+NP AYSP RG L+IATSLNA F S
Sbjct: 528 *RATEEVINPKAYSPMRGCLIIATSLNAWVFRS 626
>gb|DR160155.1|DR160155 RTFE1_4_D07.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_4_D07_A029 3', mRNA sequence
Length = 723
Score = 166 bits (357), Expect = 2e-040
Identities = 68/92 (73%), Positives = 78/92 (84%)
Frame = +3 / +1
Query: 75 HPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSAEIIRPNLSIREG 254
HPRVGEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGDIFLVNS +IIRPNLS+REG
Sbjct: 1 HPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNHLYIGDIFLVNSKDIIRPNLSVREG 180
Query: 255 IEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDR 350
IEI+VS GM+MPQ+I LE T R++R
Sbjct: 181 IEIVVSVGMSMPQLISVLERTSETVDRTRMNR 276
Score = 112 bits (240), Expect = 2e-024
Identities = 52/78 (66%), Positives = 58/78 (74%)
Frame = -3 / -2
Query: 310 SSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV 131
S I CGI IP +T ISMPSR DK G +IS E T+KMSPI +* VGT*TL +SSSPLS
Sbjct: 236 SKTEINCGIDIPTDTTISMPSRTDKFGRMISLELTRKMSPI*R*FVGT*TLQSSSSPLST 57
Query: 130 *RTMVDVMNPNAYSPTRG 77
*RT DV+ P AYSPTRG
Sbjct: 56 *RTSDDVIKPKAYSPTRG 3
>gb|BQ697926.1|BQ697926 NXPV_062_E11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_062_E11 5' similar to Arabidopsis
thaliana sequence At2g20120 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 515
Score = 162 bits (348), Expect = 3e-039
Identities = 65/103 (63%), Positives = 81/103 (78%)
Frame = +3 / +3
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPR+GEYAFGFITS++ LQ D G+EEL VYVPTNH
Sbjct: 159 SKQISAAISPDRNTQAFKEVAIIRHPRMGEYAFGFITSSVALQNDVGEEELFCVYVPTNH 338
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLE 311
LYIGDIFL+NS ++IRPNLS+R IEI++SG M+MP+V+ S++
Sbjct: 339 LYIGDIFLINSRDVIRPNLSVRXXIEIVLSGXMSMPRVLSSMD 467
>gb|BX249114.1|BX249114 BX249114 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP020B10, mRNA sequence
Length = 698
Score = 147 bits (316), Expect = 7e-035
Identities = 60/87 (68%), Positives = 69/87 (79%)
Frame = +3 / +2
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPR+GEYAFGFITS++ LQ D G+EEL VYVPTNH
Sbjct: 437 SKQISAAISPDRNTQAFKEVAIIRHPRMGEYAFGFITSSVALQNDVGEEELFCVYVPTNH 616
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEI 263
LYIGDIFL+NS ++IRPNLS+REGIEI
Sbjct: 617 LYIGDIFLINSRDVIRPNLSVREGIEI 697
>gb|BI398034.1|BI398034 NXPV_113_F09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_113_F09 5' similar to Arabidopsis
thaliana sequence At2g20120 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 505
Score = 143 bits (306), Expect = 2e-033
Identities = 59/103 (57%), Positives = 75/103 (72%)
Frame = +3 / +3
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII PR+ EYAFGFITS++ LQ D G+EEL VY TNH
Sbjct: 159 SKQISAAISPDRNTQAFKEVAIIXXPRMXEYAFGFITSSVALQNDVGEEELFCVYXXTNH 338
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLE 311
LYIGDIFL+NS ++ NLS+R IEI++SGGM+MP+V+ S++
Sbjct: 339 LYIGDIFLINSRDVXXXNLSVRXXIEIVLSGGMSMPRVLSSMD 467
>gb|DR688931.1|DR688931 EST1079017 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACC30 3' end, mRNA sequence
Length = 808
Score = 125 bits (267), Expect(2) = 1e-029
Identities = 51/69 (73%), Positives = 55/69 (79%)
Frame = +3 / +2
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPRVGEYAFGFITS++VLQ + GDEELCSVYVPTNH
Sbjct: 518 SKQISAAISPDQNTRAFKEVAIIRHPRVGEYAFGFITSSLVLQVESGDEELCSVYVPTNH 697
Query: 183 LYIGDIFLV 209
LYIGDIFLV
Sbjct: 698 LYIGDIFLV 724
Score = 24.9 bits (48), Expect(2) = 1e-029
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +3 / +3
Query: 234 NLSIREGIEII 266
NLS+REGIEI+
Sbjct: 747 NLSVREGIEIL 779
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 389,139,287
Number of Sequences: 355925
Number of extensions: 5742626
Number of successful extensions: 37263
Number of sequences better than 1.0e-020: 26
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10783529000
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)