TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3311938.2.1
(1003 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR387113.1|DR387113 RTHG1_19_C01.g1_A029 Roots plus adde... 59 7e-023
gb|CO158884.1|CO158884 FLD1_9_H09.g1_A029 Root flooded Pinu... 59 7e-023
gb|DR743783.1|DR743783 RTCU1_18_D05.b1_A029 Roots plus adde... 59 7e-023
gb|DR385457.1|DR385457 RTHG1_8_F09.g1_A029 Roots plus added... 59 7e-023
>gb|DR387113.1|DR387113 RTHG1_19_C01.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_19_C01_A029 5', mRNA sequence
Length = 821
Score = 58.8 bits (122), Expect(3) = 7e-023
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +3 / +3
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITD 410
V ++PF S A G+ +FK G GCG+C+++KC + CS V V ITD
Sbjct: 225 VKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVITD 371
Score = 51.9 bits (107), Expect(3) = 7e-023
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3 / +3
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+GTAF MA G L G++ + FRRV C+Y K
Sbjct: 411 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYPGK 533
Score = 34.5 bits (69), Expect(3) = 7e-023
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3 / +3
Query: 150 KNITANYGSDWLDAKATWYGKP 215
K+ A G+DW A ATWYG P
Sbjct: 114 KHDLATQGNDWQPATATWYGSP 179
>gb|CO158884.1|CO158884 FLD1_9_H09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_9_H09_A029 5', mRNA sequence
Length = 806
Score = 58.8 bits (122), Expect(3) = 7e-023
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +3 / +2
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITD 410
V ++PF S A G+ +FK G GCG+C+++KC + CS V V ITD
Sbjct: 254 VKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVITD 400
Score = 51.9 bits (107), Expect(3) = 7e-023
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3 / +2
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+GTAF MA G L G++ + FRRV C+Y K
Sbjct: 440 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYPGK 562
Score = 34.5 bits (69), Expect(3) = 7e-023
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3 / +2
Query: 150 KNITANYGSDWLDAKATWYGKP 215
K+ A G+DW A ATWYG P
Sbjct: 143 KHDLATQGNDWQPATATWYGSP 208
>gb|DR743783.1|DR743783 RTCU1_18_D05.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_18_D05_A029 3', mRNA sequence
Length = 793
Score = 58.8 bits (122), Expect(3) = 7e-023
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +3 / -1
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITD 410
V ++PF S A G+ +FK G GCG+C+++KC + CS V V ITD
Sbjct: 526 VKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVITD 380
Score = 51.9 bits (107), Expect(3) = 7e-023
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3 / -1
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+GTAF MA G L G++ + FRRV C+Y K
Sbjct: 340 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYPGK 218
Score = 34.5 bits (69), Expect(3) = 7e-023
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3 / -1
Query: 150 KNITANYGSDWLDAKATWYGKP 215
K+ A G+DW A ATWYG P
Sbjct: 637 KHDLATQGNDWQPATATWYGSP 572
>gb|DR385457.1|DR385457 RTHG1_8_F09.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_F09_A029 5', mRNA sequence
Length = 717
Score = 58.8 bits (122), Expect(3) = 7e-023
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +3 / +3
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITD 410
V ++PF S A G+ +FK G GCG+C+++KC + CS V V ITD
Sbjct: 225 VKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVITD 371
Score = 51.9 bits (107), Expect(3) = 7e-023
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3 / +3
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+GTAF MA G L G++ + FRRV C+Y K
Sbjct: 411 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYPGK 533
Score = 34.5 bits (69), Expect(3) = 7e-023
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3 / +3
Query: 150 KNITANYGSDWLDAKATWYGKP 215
K+ A G+DW A ATWYG P
Sbjct: 114 KHDLATQGNDWQPATATWYGSP 179
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 553,383,046
Number of Sequences: 355925
Number of extensions: 9233002
Number of successful extensions: 67141
Number of sequences better than 1.0e-020: 4
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 14997281600
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)