TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3311938.2.1
         (1003 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR387113.1|DR387113  RTHG1_19_C01.g1_A029 Roots plus adde...    59   7e-023
gb|CO158884.1|CO158884  FLD1_9_H09.g1_A029 Root flooded Pinu...    59   7e-023
gb|DR743783.1|DR743783  RTCU1_18_D05.b1_A029 Roots plus adde...    59   7e-023
gb|DR385457.1|DR385457  RTHG1_8_F09.g1_A029 Roots plus added...    59   7e-023
>gb|DR387113.1|DR387113 RTHG1_19_C01.g1_A029 Roots plus added mercury Pinus taeda cDNA
           clone RTHG1_19_C01_A029 5', mRNA sequence
          Length = 821

 Score = 58.8 bits (122), Expect(3) = 7e-023
 Identities = 22/49 (44%), Positives = 31/49 (63%)
 Frame = +3 / +3

                                                            
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITD 410
           V ++PF S  A G+  +FK G GCG+C+++KC +   CS   V V ITD
Sbjct: 225 VKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVITD 371

 Score = 51.9 bits (107), Expect(3) = 7e-023
 Identities = 20/41 (48%), Positives = 25/41 (60%)
 Frame = +3 / +3

                                                    
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
           HFDL+GTAF  MA  G    L   G++ + FRRV C+Y  K
Sbjct: 411 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYPGK 533

 Score = 34.5 bits (69), Expect(3) = 7e-023
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3 / +3

                                 
Query: 150 KNITANYGSDWLDAKATWYGKP 215
           K+  A  G+DW  A ATWYG P
Sbjct: 114 KHDLATQGNDWQPATATWYGSP 179
>gb|CO158884.1|CO158884 FLD1_9_H09.g1_A029 Root flooded Pinus taeda cDNA clone
           FLD1_9_H09_A029 5', mRNA sequence
          Length = 806

 Score = 58.8 bits (122), Expect(3) = 7e-023
 Identities = 22/49 (44%), Positives = 31/49 (63%)
 Frame = +3 / +2

                                                            
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITD 410
           V ++PF S  A G+  +FK G GCG+C+++KC +   CS   V V ITD
Sbjct: 254 VKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVITD 400

 Score = 51.9 bits (107), Expect(3) = 7e-023
 Identities = 20/41 (48%), Positives = 25/41 (60%)
 Frame = +3 / +2

                                                    
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
           HFDL+GTAF  MA  G    L   G++ + FRRV C+Y  K
Sbjct: 440 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYPGK 562

 Score = 34.5 bits (69), Expect(3) = 7e-023
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3 / +2

                                 
Query: 150 KNITANYGSDWLDAKATWYGKP 215
           K+  A  G+DW  A ATWYG P
Sbjct: 143 KHDLATQGNDWQPATATWYGSP 208
>gb|DR743783.1|DR743783 RTCU1_18_D05.b1_A029 Roots plus added copper Pinus taeda cDNA clone
           RTCU1_18_D05_A029 3', mRNA sequence
          Length = 793

 Score = 58.8 bits (122), Expect(3) = 7e-023
 Identities = 22/49 (44%), Positives = 31/49 (63%)
 Frame = +3 / -1

                                                            
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITD 410
           V ++PF S  A G+  +FK G GCG+C+++KC +   CS   V V ITD
Sbjct: 526 VKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVITD 380

 Score = 51.9 bits (107), Expect(3) = 7e-023
 Identities = 20/41 (48%), Positives = 25/41 (60%)
 Frame = +3 / -1

                                                    
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
           HFDL+GTAF  MA  G    L   G++ + FRRV C+Y  K
Sbjct: 340 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYPGK 218

 Score = 34.5 bits (69), Expect(3) = 7e-023
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3 / -1

                                 
Query: 150 KNITANYGSDWLDAKATWYGKP 215
           K+  A  G+DW  A ATWYG P
Sbjct: 637 KHDLATQGNDWQPATATWYGSP 572
>gb|DR385457.1|DR385457 RTHG1_8_F09.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
           RTHG1_8_F09_A029 5', mRNA sequence
          Length = 717

 Score = 58.8 bits (122), Expect(3) = 7e-023
 Identities = 22/49 (44%), Positives = 31/49 (63%)
 Frame = +3 / +3

                                                            
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITD 410
           V ++PF S  A G+  +FK G GCG+C+++KC +   CS   V V ITD
Sbjct: 225 VKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVITD 371

 Score = 51.9 bits (107), Expect(3) = 7e-023
 Identities = 20/41 (48%), Positives = 25/41 (60%)
 Frame = +3 / +3

                                                    
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
           HFDL+GTAF  MA  G    L   G++ + FRRV C+Y  K
Sbjct: 411 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYPGK 533

 Score = 34.5 bits (69), Expect(3) = 7e-023
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3 / +3

                                 
Query: 150 KNITANYGSDWLDAKATWYGKP 215
           K+  A  G+DW  A ATWYG P
Sbjct: 114 KHDLATQGNDWQPATATWYGSP 179
  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 553,383,046
Number of Sequences: 355925
Number of extensions: 9233002
Number of successful extensions: 67141
Number of sequences better than 1.0e-020: 4
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 14997281600
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)