TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3148257.2.1
(675 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR117496.1|DR117496 RTMG1_7_G10.b1_A029 Roots minus magn... 175 6e-047
gb|DR117586.1|DR117586 RTMG1_7_G10.g1_A029 Roots minus magn... 175 6e-047
gb|AW011545.1|AW011545 ST22A12 Pine TriplEx shoot tip libra... 171 3e-042
gb|AI812992.1|AI812992 2E10 Pine Lambda Zap Xylem library P... 126 1e-028
gb|CO167598.1|CO167598 FLD1_70_A08.b1_A029 Root flooded Pin... 126 2e-028
gb|CO167675.1|CO167675 FLD1_70_A08.g1_A029 Root flooded Pin... 126 2e-028
gb|CF397463.1|CF397463 RTDS3_3_G03.g1_A022 Drought-stressed... 122 2e-027
gb|DR020869.1|DR020869 STRS1_39_G06.g1_A034 Shoot tip pitch... 122 2e-027
gb|DR060520.1|DR060520 RTNIT1_28_H03.b1_A029 Roots minus ni... 122 2e-027
gb|BX678794.1|BX678794 BX678794 RS Pinus pinaster cDNA clon... 122 2e-027
gb|DR071603.1|DR071603 RTDK1_21_A05.b1_A029 Roots, dark Pin... 122 3e-027
gb|DR386081.1|DR386081 RTHG1_12_G05.g1_A029 Roots plus adde... 122 3e-027
gb|CF394902.1|CF394902 RTDS2_8_B01.b1_A021 Drought-stressed... 120 1e-026
gb|CO158939.1|CO158939 FLD1_10_F07.b1_A029 Root flooded Pin... 117 8e-026
gb|BX678600.1|BX678600 BX678600 RS Pinus pinaster cDNA clon... 116 2e-025
gb|DR386010.1|DR386010 RTHG1_12_G05.b1_A029 Roots plus adde... 113 1e-024
gb|DR048150.1|DR048150 RTBOR1_6_H10.g2_A029 Roots plus adde... 111 4e-024
gb|BF221028.1|BF221028 NXCI_162_C02_F NXCI (Nsf Xylem Compr... 111 5e-024
gb|DR060360.1|DR060360 RTNIT1_27_G11.b1_A029 Roots minus ni... 105 2e-022
>gb|DR117496.1|DR117496 RTMG1_7_G10.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_G10_A029 3', mRNA sequence
Length = 872
Score = 175 bits (376), Expect(2) = 6e-047
Identities = 67/99 (67%), Positives = 85/99 (85%)
Frame = +3 / +2
Query: 117 TEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAP 296
T + ID+ TS+LA +PTGWGLISIAQV+RP ++ T+VW+ +++VARLYE++ G+ IM P
Sbjct: 320 TNLKFIDLITSVLALMPTGWGLISIAQVLRPLLQPTMVWEIVVAVARLYEMIFGIIIMIP 499
Query: 297 VALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
VALLSWLPGFQ +QTR+LFNE FSRGLQISRIL GK+TN
Sbjct: 500 VALLSWLPGFQTLQTRILFNEAFSRGLQISRILVGKKTN 616
Score = 109 bits (233), Expect = 2e-023
Identities = 53/96 (55%), Positives = 63/96 (65%)
Frame = -3 / -3
Query: 418 TVFVLFPVRIRDIWRPLLKPSLKSTLVCIS*NPGNQDSNATGAIMNTPSSISYKRATEII 239
++ V P RIR+I PLLK SLKS VC * PGN +S ATG ++ P+ ISY RAT
Sbjct: 621 SILVFLPTRIREI*SPLLKASLKSIRVCNV*KPGNHESKATGIMIIMPNIISYNRATATT 442
Query: 238 LSQTTVDSMNGRIT*AIEIKPQPVGINAKRLVKMSM 131
+SQT V G T*AI+IKPQPVGINA LV S+
Sbjct: 441 ISQTMVGCNRGLRT*AIDIKPQPVGINASTLVIRSI 334
Score = 32.7 bits (65), Expect(2) = 6e-047
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 15 ARDKYAAKQHLYYR 56
A DKYAAK+H+YYR
Sbjct: 218 AEDKYAAKRHIYYR 259
>gb|DR117586.1|DR117586 RTMG1_7_G10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_G10_A029 5', mRNA sequence
Length = 763
Score = 175 bits (376), Expect(2) = 6e-047
Identities = 67/99 (67%), Positives = 85/99 (85%)
Frame = +3 / +3
Query: 117 TEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAP 296
T + ID+ TS+LA +PTGWGLISIAQV+RP ++ T+VW+ +++VARLYE++ G+ IM P
Sbjct: 453 TNLKFIDLITSVLALMPTGWGLISIAQVLRPLLQPTMVWEIVVAVARLYEMIFGIIIMIP 632
Query: 297 VALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
VALLSWLPGFQ +QTR+LFNE FSRGLQISRIL GK+TN
Sbjct: 633 VALLSWLPGFQTLQTRILFNEAFSRGLQISRILVGKKTN 749
Score = 109 bits (233), Expect = 2e-023
Identities = 53/96 (55%), Positives = 63/96 (65%)
Frame = -3 / -1
Query: 418 TVFVLFPVRIRDIWRPLLKPSLKSTLVCIS*NPGNQDSNATGAIMNTPSSISYKRATEII 239
++ V P RIR+I PLLK SLKS VC * PGN +S ATG ++ P+ ISY RAT
Sbjct: 754 SILVFLPTRIREI*SPLLKASLKSIRVCNV*KPGNHESKATGIMIIMPNIISYNRATATT 575
Query: 238 LSQTTVDSMNGRIT*AIEIKPQPVGINAKRLVKMSM 131
+SQT V G T*AI+IKPQPVGINA LV S+
Sbjct: 574 ISQTMVGCNRGLRT*AIDIKPQPVGINASTLVIRSI 467
Score = 32.7 bits (65), Expect(2) = 6e-047
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +3
Query: 15 ARDKYAAKQHLYYR 56
A DKYAAK+H+YYR
Sbjct: 351 AEDKYAAKRHIYYR 392
>gb|AW011545.1|AW011545 ST22A12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST22A12, mRNA sequence
Length = 578
Score = 171 bits (369), Expect = 3e-042
Identities = 65/122 (53%), Positives = 87/122 (71%)
Frame = +3 / +3
Query: 15 ARDKYAAKQHLYYRXXXXXXXXXXXXXXXXXXKFTEFQIIDIFTSLLAFIPTGWGLISIA 194
A DKYAAKQH+YYR + TE +++D+ TSLLAF+PTGWGLI IA
Sbjct: 150 AHDKYAAKQHIYYRAIQALVISCTILAILLLLQLTELKLVDLVTSLLAFVPTGWGLILIA 329
Query: 195 QVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQEMQTRVLFNEGFSRG 374
QV++ F+ +VW+++I+VARLYEI G+ +M P+A+LSWLPGFQ QTR+LFNE F +G
Sbjct: 330 QVLKSFLHYNIVWETVIAVARLYEITFGIIVMIPMAVLSWLPGFQATQTRILFNEAFXKG 509
Query: 375 LQ 380
L+
Sbjct: 510 LK 515
>gb|AI812992.1|AI812992 2E10 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 675
Score = 126 bits (270), Expect = 1e-028
Identities = 47/90 (52%), Positives = 66/90 (73%)
Frame = +3 / +1
Query: 135 DIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSW 314
D+F +LAF+PTGW ++ IAQ +PF+ W S+ ++AR YE ++G+ + APVA+L+W
Sbjct: 406 DLFACILAFMPTGWAILQIAQTCKPFVHRIGFWGSVRALARGYEFIMGLLLFAPVAVLAW 585
Query: 315 LPGFQEMQTRVLFNEGFSRGLQISRILTGK 404
P E QTR+LFN+ FSRGLQISRIL G+
Sbjct: 586 FPFVSEFQTRLLFNQAFSRGLQISRILAGR 675
>gb|CO167598.1|CO167598 FLD1_70_A08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_A08_A029 3', mRNA sequence
Length = 820
Score = 126 bits (269), Expect = 2e-028
Identities = 48/93 (51%), Positives = 66/93 (70%)
Frame = +3 / +3
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
I D+F LAF+PTGW + IA RP E +WDS+ ++AR YE ++G+ + PVA+L
Sbjct: 51 IADLFVCFLAFMPTGWAFLQIALACRPLFECCGLWDSVRALARSYEYVMGLHLFTPVAIL 230
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E Q+R+LFN+ FSRGLQISRILTG++
Sbjct: 231 AWFPFVSEFQSRLLFNQAFSRGLQISRILTGRK 329
>gb|CO167675.1|CO167675 FLD1_70_A08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_A08_A029 5', mRNA sequence
Length = 501
Score = 126 bits (269), Expect = 2e-028
Identities = 48/93 (51%), Positives = 66/93 (70%)
Frame = +3 / +2
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
I D+F LAF+PTGW + IA RP E +WDS+ ++AR YE ++G+ + PVA+L
Sbjct: 59 IADLFVCFLAFMPTGWAFLQIALACRPLFECCGLWDSVRALARSYEYVMGLHLFTPVAIL 238
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E Q+R+LFN+ FSRGLQISRILTG++
Sbjct: 239 AWFPFVSEFQSRLLFNQAFSRGLQISRILTGRK 337
>gb|CF397463.1|CF397463 RTDS3_3_G03.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_3_G03_A022 5', mRNA sequence
Length = 773
Score = 122 bits (262), Expect = 2e-027
Identities = 48/93 (51%), Positives = 65/93 (69%)
Frame = +3 / +2
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
+ D+F LAF+PTGW L+ IAQ RP T +S+ S+AR YE ++G+ + PVA+L
Sbjct: 338 VADLFACFLAFMPTGWALLQIAQACRPLYNRTGFLESVRSLARGYEYIMGLLLFTPVAIL 517
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E QTR+LFN+ FSRGLQISRIL G++
Sbjct: 518 AWFPFVSEFQTRLLFNQAFSRGLQISRILAGRK 616
>gb|DR020869.1|DR020869 STRS1_39_G06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_39_G06_A034 5', mRNA sequence
Length = 683
Score = 122 bits (262), Expect = 2e-027
Identities = 48/93 (51%), Positives = 65/93 (69%)
Frame = +3 / -2
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
+ D+F LAF+PTGW L+ IAQ RP T +S+ S+AR YE ++G+ + PVA+L
Sbjct: 571 VADLFACFLAFMPTGWALLQIAQACRPLYNRTGFLESVRSLARGYEYIMGLLLFTPVAIL 392
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E QTR+LFN+ FSRGLQISRIL G++
Sbjct: 391 AWFPFVSEFQTRLLFNQAFSRGLQISRILAGRK 293
>gb|DR060520.1|DR060520 RTNIT1_28_H03.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_28_H03_A029 3', mRNA sequence
Length = 692
Score = 122 bits (262), Expect = 2e-027
Identities = 48/93 (51%), Positives = 65/93 (69%)
Frame = +3 / +2
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
+ D+F LAF+PTGW L+ IAQ RP T +S+ S+AR YE ++G+ + PVA+L
Sbjct: 11 VADLFACFLAFMPTGWALLQIAQACRPLYNRTGFLESVRSLARGYEYIMGLLLFTPVAIL 190
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E QTR+LFN+ FSRGLQISRIL G++
Sbjct: 191 AWFPFVSEFQTRLLFNQAFSRGLQISRILAGRK 289
>gb|BX678794.1|BX678794 BX678794 RS Pinus pinaster cDNA clone RS15C01, mRNA sequence
Length = 488
Score = 122 bits (261), Expect = 2e-027
Identities = 46/93 (49%), Positives = 64/93 (68%)
Frame = +3 / +2
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
I D+F LAF+PTGW + IA RP ++ WDS+ ++AR Y+ ++G+ + PVA+L
Sbjct: 92 ISDLFACFLAFMPTGWAFLQIALACRPLLQHAGFWDSVRALARSYDYVMGLLLFTPVAIL 271
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E QTR LFN+ FSRGLQISRIL G++
Sbjct: 272 AWFPFVSEFQTRFLFNQAFSRGLQISRILAGRK 370
>gb|DR071603.1|DR071603 RTDK1_21_A05.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_21_A05_A029 3', mRNA sequence
Length = 769
Score = 122 bits (260), Expect = 3e-027
Identities = 46/93 (49%), Positives = 64/93 (68%)
Frame = +3 / +1
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
I D+F LAF+PTGW + IA RP ++ WDS+ ++AR Y+ ++G+ + PVA+L
Sbjct: 121 ISDLFACFLAFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVAIL 300
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E QTR LFN+ FSRGLQISRIL G++
Sbjct: 301 AWFPFVSEFQTRFLFNQAFSRGLQISRILAGRK 399
>gb|DR386081.1|DR386081 RTHG1_12_G05.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_12_G05_A029 5', mRNA sequence
Length = 804
Score = 122 bits (260), Expect = 3e-027
Identities = 46/93 (49%), Positives = 64/93 (68%)
Frame = +3 / +1
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
I D+F LAF+PTGW + IA RP ++ WDS+ ++AR Y+ ++G+ + PVA+L
Sbjct: 118 ISDLFACFLAFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVAIL 297
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E QTR LFN+ FSRGLQISRIL G++
Sbjct: 298 AWFPFVSEFQTRFLFNQAFSRGLQISRILAGRK 396
>gb|CF394902.1|CF394902 RTDS2_8_B01.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_8_B01_A021 3', mRNA sequence
Length = 559
Score = 120 bits (256), Expect = 1e-026
Identities = 46/94 (48%), Positives = 66/94 (70%)
Frame = +3 / +3
Query: 135 DIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSW 314
D+F S+LAFIPTGWG++ +A +P ++ +W SI S+ RLY+ +G+ + PVAL SW
Sbjct: 6 DVFASILAFIPTGWGILCLAIAWKPIVKRLGLWKSIRSLGRLYDAGMGMIVFIPVALCSW 185
Query: 315 LPGFQEMQTRVLFNEGFSRGLQISRILTGKRTNT 416
LP QTR++FN+ FSRGL+IS IL G + N+
Sbjct: 186 LPFVSTFQTRLMFNQAFSRGLEISLILAGNKPNS 287
>gb|CO158939.1|CO158939 FLD1_10_F07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_F07_A029 3', mRNA sequence
Length = 760
Score = 117 bits (250), Expect = 8e-026
Identities = 44/89 (49%), Positives = 61/89 (68%)
Frame = +3 / +1
Query: 141 FTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSWLP 320
F LAF+PTGW + IA RP ++ WDS+ ++AR Y+ ++G+ + PVA+L+W P
Sbjct: 1 FACFLAFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVAILAWFP 180
Query: 321 GFQEMQTRVLFNEGFSRGLQISRILTGKR 407
E QTR LFN+ FSRGLQISRIL G++
Sbjct: 181 FVSEFQTRFLFNQAFSRGLQISRILAGRK 267
>gb|BX678600.1|BX678600 BX678600 RS Pinus pinaster cDNA clone RS11G06, mRNA sequence
Length = 551
Score = 116 bits (248), Expect = 2e-025
Identities = 44/93 (47%), Positives = 62/93 (66%)
Frame = +3 / +3
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
I D+F LAF+PTGW + IA RP ++ WDS+ ++AR Y+ ++G+ + PVA+L
Sbjct: 84 ISDLFACFLAFMPTGWAFLQIALACRPLLQHAGFWDSVRALARSYDYVMGLLLFTPVAIL 263
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E QTR LFN+ FSRGL SRIL G++
Sbjct: 264 AWFPFVSEFQTRFLFNQAFSRGLXNSRILAGRK 362
>gb|DR386010.1|DR386010 RTHG1_12_G05.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_12_G05_A029 3', mRNA sequence
Length = 806
Score = 113 bits (241), Expect = 1e-024
Identities = 42/84 (50%), Positives = 59/84 (70%)
Frame = +3 / +1
Query: 156 AFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQEM 335
AF+PTGW + IA RP ++ WDS+ ++AR Y+ ++G+ + PVA+L+W P E
Sbjct: 1 AFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVAILAWFPFVSEF 180
Query: 336 QTRVLFNEGFSRGLQISRILTGKR 407
QTR LFN+ FSRGLQISRIL G++
Sbjct: 181 QTRFLFNQAFSRGLQISRILAGRK 252
>gb|DR048150.1|DR048150 RTBOR1_6_H10.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_6_H10_A029 5', mRNA sequence
Length = 691
Score = 111 bits (238), Expect = 4e-024
Identities = 41/95 (43%), Positives = 64/95 (67%)
Frame = +3 / -2
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
+ D+F S+LAF+PTGW +I +A + ++S +W S+ ++AR Y+ +G+ + P+ +L
Sbjct: 618 VTDLFASILAFVPTGWLIICLAITWKSVVKSLGLWKSVSAIARFYDAGMGILLFIPIVVL 439
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
SW P QTR+LFN+ FSRGL+IS IL G + N
Sbjct: 438 SWFPFVSTFQTRLLFNQAFSRGLEISLILAGNKPN 334
>gb|BF221028.1|BF221028 NXCI_162_C02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_162_C02 5' similar to Arabidopsis
thaliana sequence At2g31960 glucan synthase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 381
Score = 111 bits (237), Expect = 5e-024
Identities = 41/85 (48%), Positives = 60/85 (70%)
Frame = +3 / +1
Query: 153 LAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQE 332
LAF+PTGW ++ IAQ + F+ W S+ ++AR YE ++G+ + AP+A+L+W P E
Sbjct: 1 LAFMPTGWAILQIAQTCKSFVHRIGFWGSVRALARGYEFIMGLLLFAPIAVLAWFPFVSE 180
Query: 333 MQTRVLFNEGFSRGLQISRILTGKR 407
QTR+LFN+ F GLQISRIL G++
Sbjct: 181 FQTRLLFNQXFXXGLQISRILAGRK 255
>gb|DR060360.1|DR060360 RTNIT1_27_G11.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_27_G11_A029 3', mRNA sequence
Length = 569
Score = 105 bits (225), Expect = 2e-022
Identities = 40/87 (45%), Positives = 59/87 (67%)
Frame = +3 / +2
Query: 156 AFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQEM 335
AFIPTGWG++ + +P ++ +W SI S+ RLY+ +G+ + PVA+ SWLP
Sbjct: 2 AFIPTGWGILCLGIAWKPIVKRLGLWKSIRSLGRLYDAGMGMIVFIPVAMCSWLPFVSTF 181
Query: 336 QTRVLFNEGFSRGLQISRILTGKRTNT 416
QTR++FN+ FSRGL+IS IL G + N+
Sbjct: 182 QTRLMFNQAFSRGLEISLILAGNKPNS 262
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 353,276,342
Number of Sequences: 355925
Number of extensions: 5073475
Number of successful extensions: 42656
Number of sequences better than 1.0e-020: 23
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9273834940
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)