TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115190.2.2
(1172 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR161157.1|DR161157 RTFE1_10_E01.b1_A029 Roots minus iro... 342 e-100
gb|CO362033.1|CO362033 NDL2_8_E07.g1_A029 Needles control 2... 342 e-100
gb|CF390665.1|CF390665 RTDR2_20_H04.g1_A021 Loblolly pine r... 333 4e-097
gb|CF400305.1|CF400305 RTWW1_4_F08.g1_A015 Well-watered lob... 321 1e-093
gb|DR071311.1|DR071311 RTDK1_19_C02.b1_A029 Roots, dark Pin... 342 2e-093
gb|DR117422.1|DR117422 RTMG1_6_H01.g1_A029 Roots minus magn... 309 4e-092
gb|CO201745.1|CO201745 RTCNT2_7_G09.g1_A029 Root control 2 ... 329 2e-091
gb|DR746198.1|DR746198 RTCU1_35_H02.b1_A029 Roots plus adde... 334 9e-091
gb|CF401295.1|CF401295 RTWW1_11_C07.g1_A015 Well-watered lo... 304 8e-090
gb|CF401713.1|CF401713 RTWW1_14_C04.g1_A015 Well-watered lo... 307 2e-089
gb|CF389614.1|CF389614 RTDR2_8_D07.g1_A021 Loblolly pine ro... 326 1e-088
gb|CF665374.1|CF665374 RTCNT1_15_D05.g1_A029 Root control P... 319 3e-086
gb|CF402753.1|CF402753 RTWW1_22_G07.g1_A015 Well-watered lo... 295 7e-086
gb|DR120859.1|DR120859 RTMG1_32_A06.g1_A029 Roots minus mag... 309 1e-085
gb|CF399982.1|CF399982 RTWW1_2_B02.g1_A015 Well-watered lob... 317 1e-085
gb|BQ696543.1|BQ696543 NXPV_042_E02_F NXPV (Nsf Xylem Plani... 310 1e-083
gb|DR097479.1|DR097479 STRR1_34_H05.g3_A033 Stem Response R... 287 2e-083
gb|AL751061.1|AL751061 AL751061 RS Pinus pinaster cDNA clon... 279 8e-083
gb|CF669425.1|CF669425 RTCNT1_43_G02.b1_A029 Root control P... 286 2e-082
gb|DR097773.1|DR097773 STRR1_36_H05.g3_A033 Stem Response R... 282 5e-082
gb|CF671517.1|CF671517 RTCNT1_57_D05.g1_A029 Root control P... 280 2e-081
gb|CO171062.1|CO171062 NDL1_18_F08.g1_A029 Needles control ... 277 6e-081
gb|BX255698.1|BX255698 BX255698 Pinus pinaster differenciat... 277 6e-081
gb|BM133679.1|BM133679 NXLV_010_G02_F NXLV (Nsf Xylem Late ... 271 3e-079
gb|CR354745.1|CR354745 CR354745 Pinus pinaster differenciat... 289 2e-077
gb|CF401342.1|CF401342 RTWW1_11_C09.g1_A015 Well-watered lo... 263 8e-077
gb|BQ633895.1|BQ633895 NXRV062_B09_F NXRV (Nsf Xylem Root w... 169 1e-076
gb|CO200608.1|CO200608 GEO2_8_A10.g1_A032 Root gravitropism... 257 7e-075
gb|DR117495.1|DR117495 RTMG1_7_G09.b1_A029 Roots minus magn... 253 9e-074
gb|CF478224.1|CF478224 RTWW3_19_G08.g1_A022 Well-watered lo... 256 9e-074
gb|DR168990.1|DR168990 RTPHOS1_29_E12.b1_A029 Roots minus p... 250 8e-073
gb|DR069223.1|DR069223 RTDK1_5_E09.g1_A029 Roots, dark Pinu... 221 9e-072
gb|CF402186.1|CF402186 RTWW1_20_F02.g1_A015 Well-watered lo... 246 9e-071
gb|CF478684.1|CF478684 RTWW3_16_H09.g1_A022 Well-watered lo... 236 6e-070
gb|BG040297.1|BG040297 NXSI_110_G02_F NXSI (Nsf Xylem Side ... 239 2e-062
gb|CF400336.1|CF400336 RTWW1_4_C07.g1_A015 Well-watered lob... 213 7e-062
gb|CV033562.1|CV033562 RTNACL1_35_F12.b1_A029 Roots plus ad... 211 3e-061
gb|DR017596.1|DR017596 STRS1_17_G04.b1_A034 Shoot tip pitch... 199 6e-061
gb|DR100690.1|DR100690 STRR1_66_H02.g1_A033 Stem Response R... 221 7e-061
gb|CF474563.1|CF474563 RTWW2_9_G09.g1_A021 Well-watered lob... 232 3e-060
gb|BE761988.1|BE761988 NXCI_075_F07_F NXCI (Nsf Xylem Compr... 232 4e-060
gb|DR161241.1|DR161241 RTFE1_10_E01.g1_A029 Roots minus iro... 207 5e-060
gb|BF049728.1|BF049728 NXCI_106_D04_F NXCI (Nsf Xylem Compr... 230 1e-059
gb|CV033540.1|CV033540 RTNACL1_35_D11.b1_A029 Roots plus ad... 205 4e-059
gb|DR019720.1|DR019720 STRS1_32_A09.b1_A034 Shoot tip pitch... 212 4e-059
gb|CF670977.1|CF670977 RTCNT1_53_H01.g1_A029 Root control P... 201 8e-059
gb|CO199504.1|CO199504 GEO2_1_E01.g1_A032 Root gravitropism... 195 2e-057
gb|AL750621.1|AL750621 AL750621 RN Pinus pinaster cDNA clon... 190 6e-056
gb|BM367381.1|BM367381 NXLV_048_E03_F NXLV (Nsf Xylem Late ... 204 8e-056
gb|BQ198210.1|BQ198210 NXLV128_A12_F NXLV (Nsf Xylem Late w... 173 8e-056
gb|CF401168.1|CF401168 RTWW1_10_B05.g1_A015 Well-watered lo... 193 2e-055
gb|CV033650.1|CV033650 RTNACL1_35_F12.g1_A029 Roots plus ad... 190 5e-055
gb|DR023301.1|DR023301 STRS1_56_E08.g1_A034 Shoot tip pitch... 177 1e-054
gb|BX680185.1|BX680185 BX680185 RS Pinus pinaster cDNA clon... 210 2e-053
gb|DR097388.1|DR097388 STRR1_34_H05.b1_A033 Stem Response R... 184 2e-052
gb|CF473597.1|CF473597 RTWW2_3_C02.g1_A021 Well-watered lob... 183 2e-051
gb|DR023486.1|DR023486 STRS1_58_B05.b1_A034 Shoot tip pitch... 166 4e-051
gb|BG039718.1|BG039718 NXSI_103_C07_F NXSI (Nsf Xylem Side ... 202 5e-051
gb|AL751028.1|AL751028 AL751028 RS Pinus pinaster cDNA clon... 191 7e-051
gb|CO361957.1|CO361957 NDL2_8_E07.b1_A029 Needles control 2... 174 3e-050
gb|CX713137.1|CX713137 RTPQ1_7_F01.b1_A032 Roots treated wi... 174 3e-050
gb|BX250981.1|BX250981 BX250981 Pinus pinaster differenciat... 174 5e-050
gb|AW754904.1|AW754904 PC08B10 Pine TriplEx pollen cone lib... 198 8e-050
gb|CF665030.1|CF665030 RTCNT1_13_A07.g1_A029 Root control P... 174 1e-049
gb|CF400507.1|CF400507 RTWW1_5_D03.g1_A015 Well-watered lob... 173 2e-049
gb|CO174502.1|CO174502 NDL1_44_A03.g1_A029 Needles control ... 172 4e-048
gb|CO366790.1|CO366790 RTK1_30_C11.b1_A029 Roots minus pota... 166 7e-048
gb|DR048046.1|DR048046 RTBOR1_6_F07.b2_A029 Roots plus adde... 191 7e-048
gb|BQ291291.1|BQ291291 NXRV058_D01_F NXRV (Nsf Xylem Root w... 174 2e-047
gb|DR386187.1|DR386187 RTHG1_13_B03.g1_A029 Roots plus adde... 163 3e-047
gb|CX647323.1|CX647323 COLD1_15_G01.b1_A029 Root cold Pinus... 113 3e-046
gb|BQ699768.1|BQ699768 NXRV128_F12_F NXRV (Nsf Xylem Root w... 133 6e-046
gb|CF401071.1|CF401071 RTWW1_9_G03.g1_A015 Well-watered lob... 165 6e-046
gb|BX254536.1|BX254536 BX254536 Pinus pinaster differenciat... 155 2e-044
gb|DR745814.1|DR745814 RTCU1_32_E09.g1_A029 Roots plus adde... 157 3e-044
gb|CO369134.1|CO369134 RTK1_45_E02.b1_A029 Roots minus pota... 160 1e-043
gb|CF400248.1|CF400248 RTWW1_4_C07.b1_A015 Well-watered lob... 95 2e-043
gb|BE810207.1|BE810207 NXCI_061_D08_F NXCI (Nsf Xylem Compr... 174 9e-043
gb|CO170986.1|CO170986 NDL1_18_F08.b1_A029 Needles control ... 146 7e-042
gb|AW698214.1|AW698214 NXNV_070_A01_F Nsf Xylem Normal wood... 171 1e-041
gb|AW985282.1|AW985282 NXNV_135_D01_F Nsf Xylem Normal wood... 171 1e-041
gb|CD027822.1|CD027822 NXNV_070_A01 Nsf Xylem Normal wood V... 171 1e-041
gb|BQ697346.1|BQ697346 NXPV_053_A10_F NXPV (Nsf Xylem Plani... 170 2e-041
gb|DR689988.1|DR689988 EST1080074 Normalized pine embryo li... 142 4e-040
gb|CF670903.1|CF670903 RTCNT1_53_H01.b1_A029 Root control P... 138 6e-040
gb|DR683957.1|DR683957 EST1074033 Normalized pine embryo li... 95 8e-040
gb|CF474497.1|CF474497 RTWW2_9_G09.b1_A021 Well-watered lob... 114 2e-039
gb|AW698213.1|AW698213 NXNV_070_A02_F Nsf Xylem Normal wood... 162 4e-039
gb|CD027823.1|CD027823 NXNV_070_A02 Nsf Xylem Normal wood V... 162 4e-039
gb|DR177419.1|DR177419 RTMNUT1_5_F01.b1_A029 Roots minus mi... 138 4e-039
gb|CO200240.1|CO200240 GEO2_6_F04.b1_A032 Root gravitropism... 130 7e-039
gb|CF385204.1|CF385204 RTDR1_2_G08.g1_A015 Loblolly pine ro... 88 7e-038
gb|BE241357.1|BE241357 NXNV_186_H07_F Nsf Xylem Normal wood... 155 6e-037
gb|CF472577.1|CF472577 RTDS1_10_A06.g1_A015 Drought-stresse... 87 8e-037
gb|DR742971.1|DR742971 RTCU1_8_E01.g2_A029 Roots plus added... 138 4e-036
gb|BF221021.1|BF221021 NXCI_162_B02_F NXCI (Nsf Xylem Compr... 149 3e-035
gb|DR023359.1|DR023359 STRS1_57_C07.b1_A034 Shoot tip pitch... 148 7e-035
gb|DT633426.1|DT633426 EST1148357 Normalized pine embryo li... 90 6e-034
gb|DR686230.1|DR686230 EST1076308 Normalized pine embryo li... 90 6e-034
gb|BE758614.1|BE758614 NXCI_069_B03_F NXCI (Nsf Xylem Compr... 143 2e-033
gb|AW226228.1|AW226228 ST79H03 Pine TriplEx shoot tip libra... 142 4e-033
gb|CO201671.1|CO201671 RTCNT2_7_G09.b1_A029 Root control 2 ... 105 2e-031
gb|BE582301.1|BE582301 NXCI_031_G04_F NXCI (Nsf Xylem Compr... 136 3e-031
gb|BE662271.1|BE662271 ST84/ST84A04 Pine TriplEx shoot tip ... 112 5e-031
gb|BX250283.1|BX250283 BX250283 Pinus pinaster differenciat... 110 6e-031
gb|CF402095.1|CF402095 RTWW1_20_F02.b1_A015 Well-watered lo... 112 8e-031
gb|CF401104.1|CF401104 RTWW1_10_B05.b1_A015 Well-watered lo... 90 5e-030
gb|DR069148.1|DR069148 RTDK1_5_E09.b1_A029 Roots, dark Pinu... 82 8e-030
gb|DR695222.1|DR695222 EST1085315 Normalized pine embryo li... 131 8e-030
gb|DT631978.1|DT631978 EST1146909 Normalized pine embryo li... 90 1e-029
gb|BQ634030.1|BQ634030 NXRV063_H09_F NXRV (Nsf Xylem Root w... 120 3e-029
gb|CF401635.1|CF401635 RTWW1_14_C04.b1_A015 Well-watered lo... 105 3e-029
gb|DR097687.1|DR097687 STRR1_36_H05.b1_A033 Stem Response R... 129 4e-029
gb|CF478056.1|CF478056 RTWW3_17_A02.g1_A022 Well-watered lo... 128 8e-029
gb|AW064989.1|AW064989 ST38C07 Pine TriplEx shoot tip libra... 81 1e-027
gb|CX651681.1|CX651681 COLD1_54_C07.b1_A029 Root cold Pinus... 99 2e-027
gb|CX651754.1|CX651754 COLD1_54_C07.g1_A029 Root cold Pinus... 120 2e-026
gb|BX254296.1|BX254296 BX254296 Pinus pinaster differenciat... 89 5e-026
gb|AW698057.1|AW698057 NXNV_078_C05_F Nsf Xylem Normal wood... 117 1e-025
gb|DT631856.1|DT631856 EST1146787 Normalized pine embryo li... 101 7e-023
gb|BF220841.1|BF220841 NXCI_154_E09_F NXCI (Nsf Xylem Compr... 106 3e-022
gb|CF478008.1|CF478008 RTWW3_17_E11.g1_A022 Well-watered lo... 106 3e-022
gb|BQ197748.1|BQ197748 NXLV115_E01_F NXLV (Nsf Xylem Late w... 105 4e-022
gb|CF471824.1|CF471824 RTDS1_7_C12.b1_A015 Drought-stressed... 84 6e-022
gb|DR023697.1|DR023697 STRS1_59_A03.g1_A034 Shoot tip pitch... 87 7e-022
gb|CO200322.1|CO200322 GEO2_6_F04.g1_A032 Root gravitropism... 101 8e-021
>gb|DR161157.1|DR161157 RTFE1_10_E01.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_E01_A029 3', mRNA sequence
Length = 799
Score = 342 bits (742), Expect(2) = e-100
Identities = 134/210 (63%), Positives = 164/210 (78%)
Frame = +1 / -1
Query: 1 IFARSMIIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMG 180
IF R M+IQL +EL+M+S KTIDGRGA VHIANG ITVQ ++VIIH +H+HD K
Sbjct: 727 IFERDMVIQLKEELIMNSYKTIDGRGANVHIANGPCITVQYVKHVIIHGIHIHDCKPGGN 548
Query: 181 GLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHF 360
++RDSPTH G RTR+DGDG+S+F A N+W+DH S+S+C DGLID ++ ST ITISN +
Sbjct: 547 AMVRDSPTHYGWRTRSDGDGVSIFGANNIWVDHCSLSSCTDGLIDAIRGSTAITISNNYM 368
Query: 361 TNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYA 540
+ H+ VML G SD + QD MQ+T+AFNHFG GLVQRMPRCR G+FHVVNNDYTHW MYA
Sbjct: 367 SQHDKVMLLGHSDDYTQDVNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYA 188
Query: 541 IGGGDAPTIISQGNRYIAPPNIAAKVITKH 630
IGG PTI SQGNR++AP N +K +TKH
Sbjct: 187 IGGSANPTINSQGNRFLAPSNAFSKEVTKH 98
Score = 116 bits (247), Expect(3) = 6e-047
Identities = 51/85 (60%), Positives = 61/85 (71%)
Frame = -1 / +3
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
CLV +L GA RLPWL++VG + PP+AY+SQ V*SL TTWK P RHLG+RCT P P
Sbjct: 99 CLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMRCTSPSP 278
Query: 449 KWLKATVICMIWSCGQESLAPKSMT 375
KWLKA V CM+ S SL P+S+T
Sbjct: 279 KWLKAIVTCMLTS*V*SSLWPRSIT 353
Score = 69.8 bits (146), Expect(3) = 6e-047
Identities = 33/53 (62%), Positives = 34/53 (64%)
Frame = -1 / +3
Query: 350 LEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALVREPMCVGES 192
LEMVI V+ SM PS QLD E WS Q L A K E PSPS LV P CVGES
Sbjct: 378 LEMVIAVDPRMASMSPSVQLDKEQWSTQILFAPKMETPSPSLLVLHP*CVGES 536
Score = 45.1 bits (92), Expect(2) = e-100
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1 / -1
Query: 634 AEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
A E W+ W W +E DL +NGA F SG A
Sbjct: 91 APENAWRQWNWRSEGDLMLNGAFFTQSGAA 2
Score = 41.4 bits (84), Expect(3) = 6e-047
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = -3 / +2
Query: 99 VGDVHLRAAPVDGLVAAHEQLLRELDDHGPRED 1
VGDV + A+ VD LV H++LL ELDDH +D
Sbjct: 629 VGDVDIGASAVDCLVTVHDKLLFELDDHVSLKD 727
>gb|CO362033.1|CO362033 NDL2_8_E07.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E07_A029 5', mRNA sequence
Length = 753
Score = 342 bits (742), Expect(2) = e-100
Identities = 134/210 (63%), Positives = 164/210 (78%)
Frame = +1 / +3
Query: 1 IFARSMIIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMG 180
IF R M+IQL +EL+M+S KTIDGRGA VHIANG ITVQ ++VIIH +H+HD K
Sbjct: 12 IFERDMVIQLKEELIMNSYKTIDGRGANVHIANGPCITVQYVKHVIIHGIHIHDCKPGGN 191
Query: 181 GLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHF 360
++RDSPTH G RTR+DGDG+S+F A N+W+DH S+S+C DGLID ++ ST ITISN +
Sbjct: 192 AMVRDSPTHYGWRTRSDGDGVSIFGANNIWVDHCSLSSCTDGLIDAIRGSTAITISNNYM 371
Query: 361 TNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYA 540
+ H+ VML G SD + QD MQ+T+AFNHFG GLVQRMPRCR G+FHVVNNDYTHW MYA
Sbjct: 372 SQHDKVMLLGHSDDYTQDVNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYA 551
Query: 541 IGGGDAPTIISQGNRYIAPPNIAAKVITKH 630
IGG PTI SQGNR++AP N +K +TKH
Sbjct: 552 IGGSANPTINSQGNRFLAPSNAFSKEVTKH 641
Score = 116 bits (247), Expect(3) = 6e-047
Identities = 51/85 (60%), Positives = 61/85 (71%)
Frame = -1 / -3
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
CLV +L GA RLPWL++VG + PP+AY+SQ V*SL TTWK P RHLG+RCT P P
Sbjct: 640 CLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMRCTSPSP 461
Query: 449 KWLKATVICMIWSCGQESLAPKSMT 375
KWLKA V CM+ S SL P+S+T
Sbjct: 460 KWLKAIVTCMLTS*V*SSLWPRSIT 386
Score = 69.8 bits (146), Expect(3) = 6e-047
Identities = 33/53 (62%), Positives = 34/53 (64%)
Frame = -1 / -3
Query: 350 LEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALVREPMCVGES 192
LEMVI V+ SM PS QLD E WS Q L A K E PSPS LV P CVGES
Sbjct: 361 LEMVIAVDPRMASMSPSVQLDKEQWSTQILFAPKMETPSPSLLVLHP*CVGES 203
Score = 45.1 bits (92), Expect(2) = e-100
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1 / +3
Query: 634 AEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
A E W+ W W +E DL +NGA F SG A
Sbjct: 648 APENAWRQWNWRSEGDLMLNGAFFTQSGAA 737
Score = 41.4 bits (84), Expect(3) = 6e-047
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = -3 / -2
Query: 99 VGDVHLRAAPVDGLVAAHEQLLRELDDHGPRED 1
VGDV + A+ VD LV H++LL ELDDH +D
Sbjct: 110 VGDVDIGASAVDCLVTVHDKLLFELDDHVSLKD 12
>gb|CF390665.1|CF390665 RTDR2_20_H04.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_20_H04_A021 5', mRNA
sequence
Length = 704
Score = 333 bits (721), Expect(2) = 4e-097
Identities = 129/203 (63%), Positives = 160/203 (78%)
Frame = +1 / +3
Query: 19 IIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMGGLMRDS 198
+IQL +EL+M+S KTIDGRG VHIANG ITVQ ++IIH +HVHD K ++RDS
Sbjct: 3 VIQLKEELIMNSYKTIDGRGVNVHIANGPCITVQYVSHIIIHGIHVHDCKPAGNAMVRDS 182
Query: 199 PTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDV 378
PTH G RT DGDGIS+F ++VW+DH+S++NC DGLID + +ST ITISN +FTNHN+V
Sbjct: 183 PTHYGWRTICDGDGISIFGGSHVWVDHVSLANCADGLIDAIMASTAITISNSYFTNHNEV 362
Query: 379 MLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDA 558
ML G SDS+ D M++TVA+NHFG GL+QRMPRC+ G+FHVVNNDYTHW MYAIGG
Sbjct: 363 MLLGHSDSYTPDVNMRVTVAYNHFGEGLIQRMPRCKHGYFHVVNNDYTHWEMYAIGGSAN 542
Query: 559 PTIISQGNRYIAPPNIAAKVITK 627
PTI SQGNR++AP N +AK +TK
Sbjct: 543 PTINSQGNRFLAPANPSAKEVTK 611
Score = 162 bits (349), Expect(3) = 1e-042
Identities = 78/144 (54%), Positives = 95/144 (65%)
Frame = -1 / -2
Query: 623 VITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKW 444
V + A F GA LP L++VG + PP+AY+SQ V*SL TTWK P HLGIRC RP PKW
Sbjct: 607 VTSFAEGFAGAKNLLP*LLIVGFALPPIAYISQ*V*SLFTTWKYPCLHLGIRCIRPSPKW 428
Query: 443 LKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQT 264
L ATV + S SL P ++TSLWLVK E+VI V+ S+RPS+QL E WS QT
Sbjct: 427 LYATVTRIFTSGV*LSL*PNNITSLWLVK*LFEIVIAVDAMMASIRPSAQLAKETWSTQT 248
Query: 263 LVAEKREMPSPSALVREPMCVGES 192
+ K ++PSPS +V P CVGES
Sbjct: 247 WLPPKMDIPSPSQIVLHP*CVGES 176
Score = 43.2 bits (88), Expect(2) = 4e-097
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1 / +3
Query: 607 AAKVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSG 717
A +V + Y + WK W W ++ D+ +NGA F PSG
Sbjct: 594 AKEVTKRIYGDVDQWKYWNWRSKGDMMLNGAYFVPSG 704
Score = 27.2 bits (53), Expect(3) = 1e-042
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3 / -1
Query: 99 VGDVHLRAAPVDGLVAAHEQLLRELDD 19
V +V + VD LV H+QLL LDD
Sbjct: 83 VCNVDINTPSVDCLVTVHDQLLL*LDD 3
Score = 22.6 bits (43), Expect(3) = 1e-042
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -1 / -2
Query: 716 PDGLKMAPFMNRSSSVCHTQFFH 648
PDG K AP S Q+FH
Sbjct: 703 PDGTKYAPLSIISPFDLQFQYFH 635
>gb|CF400305.1|CF400305 RTWW1_4_F08.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_4_F08_A015 5', mRNA sequence
Length = 763
Score = 321 bits (695), Expect(2) = 1e-093
Identities = 126/199 (63%), Positives = 153/199 (76%)
Frame = +1 / +2
Query: 34 QELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMGGLMRDSPTHIG 213
+EL+M+S KTIDGRG VHIANGA ITVQ ++IIH +H+HD K ++RDSP H G
Sbjct: 5 EELIMNSYKTIDGRGVNVHIANGACITVQYVHHIIIHGIHIHDCKPAGNAMVRDSPGHYG 184
Query: 214 SRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGA 393
RTR+DGDG+S+F +N+W+DH S+SNC DGLID + ST ITISN T+H+ VML G
Sbjct: 185 WRTRSDGDGVSIFGGSNIWVDHCSLSNCADGLIDAILGSTAITISNNFMTHHDKVMLLGH 364
Query: 394 SDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIIS 573
SD + QD MQ+TVAFNHFG GLVQR+PRCR G+FHVVNNDYTHW MYAIGG PTI S
Sbjct: 365 SDEYVQDVNMQVTVAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS 544
Query: 574 QGNRYIAPPNIAAKVITKH 630
QGNR++AP N +K +TKH
Sbjct: 545 QGNRFLAPVNRFSKEVTKH 601
Score = 186 bits (400), Expect(2) = 1e-048
Identities = 83/146 (56%), Positives = 96/146 (65%)
Frame = -1 / -2
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
C V +L GA RLPWL++VG + PP+AY+SQCV*SL TTWK P RHLG+RCT P P
Sbjct: 600 CFVTSLEKRLTGARNRLPWLLIVGLALPPIAYISQCV*SLFTTWK*PCRHLGMRCTSPSP 421
Query: 449 KWLKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSI 270
KWLKATV CM+ SC SL P+SMT W V E+VI V+ SM PS+Q D E S
Sbjct: 420 KWLKATVTCMLTSCTYSSLWPRSMTLSWCVIKLFEIVIAVDPRIASMSPSAQFDKEQ*ST 241
Query: 269 QTLVAEKREMPSPSALVREPMCVGES 192
Q L+ K E PSPS LV P C GES
Sbjct: 240 QILLPPKMETPSPSLLVLHP*CPGES 163
Score = 43.7 bits (89), Expect(2) = 1e-093
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1 / +2
Query: 634 AEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
A E W+ W W ++ DL +NGA F SG A
Sbjct: 608 APESAWRQWNWRSDGDLMLNGAFFTQSGAA 697
Score = 28.1 bits (55), Expect(2) = 1e-048
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1 / -2
Query: 119 CTVIPAPLAMCTCAPRP 69
CTV+ APLAM T P P
Sbjct: 90 CTVMQAPLAMWTFTPLP 40
>gb|DR071311.1|DR071311 RTDK1_19_C02.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_19_C02_A029 3', mRNA sequence
Length = 793
Score = 342 bits (742), Expect = 2e-093
Identities = 134/210 (63%), Positives = 164/210 (78%)
Frame = +1 / -2
Query: 1 IFARSMIIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMG 180
IF R M+IQL +EL+M+S KTIDGRGA VHIANG ITVQ ++VIIH +H+HD K
Sbjct: 630 IFERDMVIQLKEELIMNSYKTIDGRGANVHIANGPCITVQYVKHVIIHGIHIHDCKPGGN 451
Query: 181 GLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHF 360
++RDSPTH G RTR+DGDG+S+F A N+W+DH S+S+C DGLID ++ ST ITISN +
Sbjct: 450 AMVRDSPTHYGWRTRSDGDGVSIFGANNIWVDHCSLSSCTDGLIDAIRGSTAITISNNYM 271
Query: 361 TNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYA 540
+ H+ VML G SD + QD MQ+T+AFNHFG GLVQRMPRCR G+FHVVNNDYTHW MYA
Sbjct: 270 SQHDKVMLLGHSDDYTQDVNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYA 91
Query: 541 IGGGDAPTIISQGNRYIAPPNIAAKVITKH 630
IGG PTI SQGNR++AP N +K +TKH
Sbjct: 90 IGGSANPTINSQGNRFLAPSNAFSKEVTKH 1
Score = 116 bits (247), Expect(3) = 8e-044
Identities = 51/85 (60%), Positives = 61/85 (71%)
Frame = -1 / +2
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
CLV +L GA RLPWL++VG + PP+AY+SQ V*SL TTWK P RHLG+RCT P P
Sbjct: 2 CLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMRCTSPSP 181
Query: 449 KWLKATVICMIWSCGQESLAPKSMT 375
KWLKA V CM+ S SL P+S+T
Sbjct: 182 KWLKAIVTCMLTS*V*SSLWPRSIT 256
Score = 69.8 bits (146), Expect(3) = 8e-044
Identities = 33/53 (62%), Positives = 34/53 (64%)
Frame = -1 / +2
Query: 350 LEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALVREPMCVGES 192
LEMVI V+ SM PS QLD E WS Q L A K E PSPS LV P CVGES
Sbjct: 281 LEMVIAVDPRMASMSPSVQLDKEQWSTQILFAPKMETPSPSLLVLHP*CVGES 439
Score = 30.9 bits (61), Expect(3) = 8e-044
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1 / +2
Query: 140 MMTFCASCTVIPAPLAMCTCAPRP 69
M+T CTV+ PLAM T AP P
Sbjct: 491 MITCFTYCTVMQGPLAMWTLAPLP 562
>gb|DR117422.1|DR117422 RTMG1_6_H01.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_6_H01_A029 5', mRNA sequence
Length = 826
Score = 309 bits (669), Expect(2) = 4e-092
Identities = 119/189 (62%), Positives = 145/189 (76%)
Frame = +1 / +2
Query: 61 TIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMGGLMRDSPTHIGSRTRADGDG 240
TIDGRG VHIANG ITVQ ++IIH +HVHD K ++RDSPTH G RT DGDG
Sbjct: 2 TIDGRGVNVHIANGPCITVQYVSHIIIHGIHVHDCKPAGNAMVRDSPTHYGWRTICDGDG 181
Query: 241 ISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQI 420
IS+F +++W+DH+S+SNC DGLID + ST ITISN +FT+HN+VML G SD + D
Sbjct: 182 ISIFGGSHIWVDHVSLSNCADGLIDAIMGSTAITISNSYFTHHNEVMLLGHSDGYTPDVN 361
Query: 421 MQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPP 600
M++T+A+NHFG GL+QRMPRCR G+FHVVNNDYTHW MYAIGG PTI SQGNR++AP
Sbjct: 362 MRVTIAYNHFGEGLMQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPA 541
Query: 601 NIAAKVITK 627
N AK +TK
Sbjct: 542 NPFAKEVTK 568
Score = 159 bits (341), Expect(3) = 6e-044
Identities = 78/144 (54%), Positives = 92/144 (63%)
Frame = -1 / -2
Query: 623 VITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKW 444
V + A F GA LP L++VG + PP+AY+SQ V*SL TTWK P HLGIRC RP PKW
Sbjct: 564 VTSFAKGFAGAKNLLP*LLIVGFALPPIAYISQ*V*SLFTTWKYPCLHLGIRCIRPSPKW 385
Query: 443 LKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQT 264
L A V + S SL P ++TSLW VK EMV+ VE SMRPS+QLD E WS Q
Sbjct: 384 LYAIVTRIFTSGV*PSL*PNNITSLW*VK*LFEMVMAVEPMMASMRPSAQLDKETWSTQM 205
Query: 263 LVAEKREMPSPSALVREPMCVGES 192
+ E+PSPS +V P CVGES
Sbjct: 204 *LPPNMEIPSPSQIVLHP*CVGES 133
Score = 50.6 bits (104), Expect(2) = 4e-092
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +1 / +2
Query: 607 AAKVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
A +V + Y + WKNW W ++ DL +NGA F PSG A
Sbjct: 551 AKEVTKRVYGDLDEWKNWNWRSKGDLMLNGAYFTPSGAA 667
Score = 34.5 bits (69), Expect(3) = 6e-044
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -1 / -2
Query: 722 APPDGLKMAPFMNRSSSVCHTQFFHTPSS 636
A PDG+K APF RS QFFH+ S
Sbjct: 666 AAPDGVKYAPFSIRSPFDLQFQFFHSSKS 580
Score = 23.5 bits (45), Expect(3) = 6e-044
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1 / -2
Query: 143 WMMTFCASCTVIPAPLAMCTCAPRP 69
WM+ TVI P AM T P P
Sbjct: 84 WMIM*LTY*TVIHGPFAMWTFTPLP 10
>gb|CO201745.1|CO201745 RTCNT2_7_G09.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_7_G09_A029 5', mRNA sequence
Length = 837
Score = 329 bits (712), Expect(2) = 2e-091
Identities = 129/208 (62%), Positives = 160/208 (76%)
Frame = +1 / +2
Query: 4 FARSMIIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMGG 183
F R M+IQL +EL+M+S KTIDGRG VHIANG ITVQ ++IIH +H+HD K
Sbjct: 167 FERDMVIQLKEELIMNSYKTIDGRGVNVHIANGPCITVQYVSHIIIHGIHIHDCKPAGNA 346
Query: 184 LMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFT 363
++RDSPTH G RT +DGDG+S+F A+N+W+DH S+S+C DGLID ++ ST ITISN T
Sbjct: 347 MVRDSPTHYGWRTISDGDGVSIFGASNIWVDHCSLSSCTDGLIDAIRGSTAITISNNFMT 526
Query: 364 NHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAI 543
+H+ VML G +D + QD MQ+TVAFNHFG GLVQRMPRCR G+FHVVNNDYTHW MYAI
Sbjct: 527 HHDKVMLLGHNDDYTQDVNMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAI 706
Query: 544 GGGDAPTIISQGNRYIAPPNIAAKVITK 627
GG PTI SQGNR++AP ++K +TK
Sbjct: 707 GGSANPTINSQGNRFLAPDYHSSKEVTK 790
Score = 172 bits (370), Expect(2) = 6e-047
Identities = 80/135 (59%), Positives = 91/135 (67%)
Frame = -1 / -1
Query: 596 GAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKWLKATVICMI 417
GA RLPWL++VG + PPMAY+SQ V*SL TT K P RHLG+RCT P PKWLKATV CM+
Sbjct: 759 GARNRLPWLLIVGFALPPMAYISQWV*SLFTT*K*PCRHLGMRCTSPSPKWLKATVTCML 580
Query: 416 WSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMP 237
S SL P S+T W V E+VI V+ SM PS QLD E WS Q L+A K E P
Sbjct: 579 TSWV*SSLWPNSITLSWWVIKLFEIVIAVDPLMASMSPSVQLDKEQWSTQILLAPKMETP 400
Query: 236 SPSALVREPMCVGES 192
SPS +V P CVGES
Sbjct: 399 SPSLIVLHP*CVGES 355
Score = 36.3 bits (73), Expect(2) = 6e-047
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -3 / -3
Query: 102 AVGDVHLRAAPVDGLVAAHEQLLRELDDH 16
AV +V + A+ VD LVA H++L ELDDH
Sbjct: 265 AVCNVDIDASAVDCLVAVHDKLFFELDDH 179
Score = 28.1 bits (55), Expect(2) = 2e-091
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +1 / +2
Query: 613 KVITKHYAEEGVWKNWVW 666
+V + Y E VWK W W
Sbjct: 779 EVTKREYTAESVWKQWNW 832
>gb|DR746198.1|DR746198 RTCU1_35_H02.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_35_H02_A029 3', mRNA sequence
Length = 753
Score = 334 bits (723), Expect = 9e-091
Identities = 130/205 (63%), Positives = 159/205 (77%)
Frame = +1 / -1
Query: 1 IFARSMIIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMG 180
IF R M+IQL +EL+M+S KTIDGRG VHI NG ITVQ ++IIH +HVHD +
Sbjct: 615 IFQRDMVIQLKEELIMNSYKTIDGRGVNVHIGNGPCITVQYVSHIIIHGIHVHDCRPAGN 436
Query: 181 GLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHF 360
++RDSPTH G RT +DGDGIS+F ++VW+DH+S+SNC DGLID + STGITISN HF
Sbjct: 435 AMVRDSPTHYGWRTISDGDGISIFGGSDVWVDHVSLSNCADGLIDAIMGSTGITISNSHF 256
Query: 361 TNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYA 540
T+H+ +L GASDS+ D M++T+A+NHFG+GLVQRMPRCR G+FHVVNNDYTHW MYA
Sbjct: 255 THHDKAILLGASDSYTPDVKMRVTIAYNHFGKGLVQRMPRCRHGYFHVVNNDYTHWEMYA 76
Query: 541 IGGGDAPTIISQGNRYIAPPNIAAK 615
IGG PTI SQGNR+ AP N AK
Sbjct: 75 IGGSANPTINSQGNRFSAPDNALAK 1
Score = 162 bits (348), Expect(2) = 4e-045
Identities = 75/140 (53%), Positives = 91/140 (65%)
Frame = -1 / +2
Query: 611 AAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKWLKAT 432
A GA P L++VG + PP+AY+SQ V*SL TTWK P HLGI CTRPLPKWL A
Sbjct: 5 AKALSGAENLFP*LLIVGFALPPIAYISQ*V*SLFTTWKYPCLHLGILCTRPLPKWLYAI 184
Query: 431 VICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAE 252
V ++ S SLAP ++ W VKW EMV+PV+ SMRPS+QLD + WS T +
Sbjct: 185 VTRILTSGV*LSLAPNNIALSW*VKWLFEMVMPVDPMMASMRPSAQLDNDTWSTHTSLPP 364
Query: 251 KREMPSPSALVREPMCVGES 192
K E+PSPS +V P CVGES
Sbjct: 365 KMEIPSPSLIVLHP*CVGES 424
Score = 40.5 bits (82), Expect(2) = 4e-045
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = -3 / +1
Query: 105 GAVGDVHLRAAPVDGLVAAHEQLLRELDDHGPRED 1
GAV +V + VD LV H+Q L ELDDH ED
Sbjct: 511 GAVPNVDINTPSVDCLVTVHDQFLLELDDHVSLED 615
>gb|CF401295.1|CF401295 RTWW1_11_C07.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_11_C07_A015 5', mRNA sequence
Length = 755
Score = 304 bits (658), Expect(2) = 8e-090
Identities = 118/188 (62%), Positives = 142/188 (75%)
Frame = +1 / +3
Query: 67 DGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMGGLMRDSPTHIGSRTRADGDGIS 246
DGRG VHIANGA ITVQ ++IIH +H+HD K ++RDSP H G RTR+DGDG+S
Sbjct: 3 DGRGVNVHIANGACITVQYVHHIIIHGIHIHDCKPAGNAMVRDSPGHYGWRTRSDGDGVS 182
Query: 247 LFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQ 426
+F +N+W+DH S+SNC DGLID + ST ITISN T+H+ VML G SD + QD MQ
Sbjct: 183 IFGGSNIWVDHCSLSNCADGLIDAIMGSTAITISNNFMTHHDKVMLLGHSDEYVQDVNMQ 362
Query: 427 ITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNI 606
+TVAFNHFG GLVQR+PRCR G+FHVVNNDY HW MYAIGG PTI SQGNR++AP N
Sbjct: 363 VTVAFNHFGEGLVQRIPRCRHGYFHVVNNDYAHWEMYAIGGSANPTINSQGNRFLAPVNR 542
Query: 607 AAKVITKH 630
+K +TKH
Sbjct: 543 FSKEVTKH 566
Score = 189 bits (408), Expect(2) = 2e-049
Identities = 82/146 (56%), Positives = 96/146 (65%)
Frame = -1 / -2
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
C V +L GA RLPWL++VG + PP+AY+SQC *SL TTWK P RHLG+RCT P P
Sbjct: 565 CFVTSLEKRLTGARNRLPWLLIVGFALPPIAYISQCA*SLFTTWK*PCRHLGMRCTSPSP 386
Query: 449 KWLKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSI 270
KWLKATV CM+ SC SL P+S+T W V E+VI V+ SM PS+Q D E WS
Sbjct: 385 KWLKATVTCMLTSCTYSSLWPRSITLSWCVIKLFEIVIAVDPMIASMSPSAQFDKEQWST 206
Query: 269 QTLVAEKREMPSPSALVREPMCVGES 192
Q L+ K E PSPS LV P C GES
Sbjct: 205 QILLPPKMETPSPSLLVLHP*CPGES 128
Score = 47.8 bits (98), Expect(2) = 8e-090
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1 / +3
Query: 613 KVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
+V YA E W+ W W ++ DL +NGA F SG A
Sbjct: 552 EVTKHEYAPESAWRRWNWRSDGDLMLNGAFFTQSGAA 662
Score = 27.2 bits (53), Expect(2) = 2e-049
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1 / -2
Query: 119 CTVIPAPLAMCTCAPRP 69
CTV+ APLAM T P P
Sbjct: 55 CTVMQAPLAM*TFTPLP 5
>gb|CF401713.1|CF401713 RTWW1_14_C04.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_14_C04_A015 5', mRNA sequence
Length = 733
Score = 307 bits (664), Expect(2) = 2e-089
Identities = 118/189 (62%), Positives = 146/189 (77%)
Frame = +1 / +2
Query: 64 IDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMGGLMRDSPTHIGSRTRADGDGI 243
IDGRG VH+ANGA ITVQ ++IIH +H+HD K ++RDSP H G RTR+DGDG+
Sbjct: 2 IDGRGVNVHVANGACITVQYVHHIIIHGIHIHDCKPAGNAMVRDSPGHYGWRTRSDGDGV 181
Query: 244 SLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIM 423
S+F +N+W+DH S+SNC DGLID + ST ITISN T+H++VML G SD + QD M
Sbjct: 182 SIFGGSNIWVDHCSLSNCADGLIDAILGSTAITISNNFMTHHDNVMLLGHSDEYMQDVNM 361
Query: 424 QITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPN 603
Q+TVAFNHFG GLVQR+PRCR G+FHVVNNDYTHW MYAIGG PTI SQGNR++AP +
Sbjct: 362 QVTVAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPVD 541
Query: 604 IAAKVITKH 630
++K +TKH
Sbjct: 542 RSSKEVTKH 568
Score = 177 bits (380), Expect(2) = 5e-045
Identities = 81/146 (55%), Positives = 94/146 (64%)
Frame = -1 / -2
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
C V + GA RLPWL++VG + PP+AY+SQCV*SL TTWK P RHLG+R T P P
Sbjct: 567 CFVTSFEERSTGARNRLPWLLIVGLALPPIAYISQCV*SLFTTWK*PCRHLGMRWTSPSP 388
Query: 449 KWLKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSI 270
KWLKATV CM+ SC SL P+SMT W V E+VI V+ SM PS+Q D E S
Sbjct: 387 KWLKATVTCMLTSCIYSSL*PRSMTLSWCVIKLFEIVIAVDPRIASMSPSAQFDKEQ*ST 208
Query: 269 QTLVAEKREMPSPSALVREPMCVGES 192
Q L+ K E PSPS LV P C GES
Sbjct: 207 QILLPPKMETPSPSLLVLHP*CPGES 130
Score = 43.7 bits (89), Expect(2) = 2e-089
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1 / +2
Query: 634 AEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
A E W+ W W ++ DL +NGA F SG A
Sbjct: 575 APESAWRQWNWRSDGDLMLNGAFFTQSGAA 664
Score = 25.4 bits (49), Expect(2) = 5e-045
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1 / -2
Query: 119 CTVIPAPLAMCTCAPRP 69
CTV+ APLA T P P
Sbjct: 57 CTVMQAPLATWTFTPLP 7
>gb|CF389614.1|CF389614 RTDR2_8_D07.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_D07_A021 5', mRNA
sequence
Length = 638
Score = 326 bits (707), Expect = 1e-088
Identities = 131/204 (64%), Positives = 155/204 (75%)
Frame = +1 / +3
Query: 19 IIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMGGLMRDS 198
+IQL +EL M+S KTIDGRGA VHIANGA ITVQ ++IIH +H+HD K ++RDS
Sbjct: 3 VIQLKEELFMNSYKTIDGRGANVHIANGACITVQYVHHIIIHGIHIHDCKPAGNAMVRDS 182
Query: 199 PTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDV 378
P H G RTR+DGDG+S+ +N+WIDH S+SNC DGLID V ST ITISN T+H+ V
Sbjct: 183 PGHYGWRTRSDGDGVSIVGGSNIWIDHCSLSNCSDGLIDAVLGSTAITISNNFMTHHDKV 362
Query: 379 MLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDA 558
ML G SD + QD MQ+TVAFNHFG GLVQR+PRCR G+FHVVNNDYTHW MYAIGG
Sbjct: 363 MLLGHSDEYVQDVNMQVTVAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSAN 542
Query: 559 PTIISQGNRYIAPPNIAAKVITKH 630
PTI SQGNR+ AP N +K +TKH
Sbjct: 543 PTINSQGNRFFAPVNRFSKEVTKH 614
Score = 195 bits (421), Expect(2) = 3e-052
Identities = 86/146 (58%), Positives = 97/146 (66%)
Frame = -1 / -2
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
C V +L GA RLPWL++VG + PP+AY+SQCV*SL TTWK P RHLG+RCT P P
Sbjct: 613 CFVTSLEKRLTGAKNRLPWLLIVGFALPPIAYISQCV*SLFTTWK*PCRHLGMRCTSPSP 434
Query: 449 KWLKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSI 270
KWLKATV CM+ SC SL P+SMT W V E+VI VE T SM PS Q D E WSI
Sbjct: 433 KWLKATVTCMLTSCTYSSLWPRSMTLSWCVIKLFEIVIAVEPRTASMSPSEQFDKEQWSI 254
Query: 269 QTLVAEKREMPSPSALVREPMCVGES 192
Q L+ E PSPS LV P C GES
Sbjct: 253 QILLPPTMETPSPSLLVLHP*CPGES 176
Score = 30.9 bits (61), Expect(2) = 3e-052
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1 / -2
Query: 140 MMTFCASCTVIPAPLAMCTCAPRP 69
M+ + CTV+ APLAM T AP P
Sbjct: 124 MIMWWTYCTVMQAPLAMWTFAPLP 53
>gb|CF665374.1|CF665374 RTCNT1_15_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_15_D05_A029 5', mRNA sequence
Length = 583
Score = 319 bits (690), Expect = 3e-086
Identities = 124/192 (64%), Positives = 152/192 (79%)
Frame = +1 / +3
Query: 16 MIIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMGGLMRD 195
M+IQL +EL+M+S KTIDGRGA VHIANG ITVQ ++VIIH +H+HD K ++RD
Sbjct: 6 MVIQLKEELIMNSYKTIDGRGANVHIANGPCITVQYVKHVIIHGIHIHDCKPGGNAMVRD 185
Query: 196 SPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHND 375
SPTH G RTR+DGDG+S+F A N+W+DH S+S+C DGLID ++ ST ITISN + + H+
Sbjct: 186 SPTHYGWRTRSDGDGVSIFGANNIWVDHCSLSSCTDGLIDAIRGSTAITISNNYMSQHDK 365
Query: 376 VMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGD 555
VML G SD + QD MQ+T+AFNHFG GLVQRMPRCR G+FHVVNNDYTHW MYAIGG
Sbjct: 366 VMLLGHSDDYTQDVNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSA 545
Query: 556 APTIISQGNRYI 591
PTI SQGNR++
Sbjct: 546 NPTINSQGNRFL 581
Score = 107 bits (229), Expect(3) = 2e-041
Identities = 45/70 (64%), Positives = 54/70 (77%)
Frame = -1 / -1
Query: 584 RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKWLKATVICMIWSCG 405
RLPWL++VG + PP+AY+SQ V*SL TTWK P RHLG+RCT P PKWLKA V CM+ S
Sbjct: 574 RLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMRCTSPSPKWLKAIVTCMLTS*V 395
Query: 404 QESLAPKSMT 375
SL P+S+T
Sbjct: 394 *SSLWPRSIT 365
Score = 69.8 bits (146), Expect(3) = 2e-041
Identities = 33/53 (62%), Positives = 34/53 (64%)
Frame = -1 / -1
Query: 350 LEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALVREPMCVGES 192
LEMVI V+ SM PS QLD E WS Q L A K E PSPS LV P CVGES
Sbjct: 340 LEMVIAVDPRMASMSPSVQLDKEQWSTQILFAPKMETPSPSLLVLHP*CVGES 182
Score = 30.9 bits (61), Expect(3) = 2e-041
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1 / -1
Query: 140 MMTFCASCTVIPAPLAMCTCAPRP 69
M+T CTV+ PLAM T AP P
Sbjct: 130 MITCFTYCTVMQGPLAMWTLAPLP 59
>gb|CF402753.1|CF402753 RTWW1_22_G07.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_22_G07_A015 5', mRNA sequence
Length = 807
Score = 295 bits (638), Expect(2) = 7e-086
Identities = 115/182 (63%), Positives = 139/182 (76%)
Frame = +1 / +2
Query: 85 VHIANGAGITVQLAQNVIIHNLHVHDVKHTMGGLMRDSPTHIGSRTRADGDGISLFSATN 264
VHIANGA ITVQ ++IIH +H+HD K ++RDSP H G RTR+DGDG+S+F +N
Sbjct: 2 VHIANGACITVQYVHHIIIHGIHIHDCKPAGNAMVRDSPGHYGWRTRSDGDGVSIFGGSN 181
Query: 265 VWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFN 444
+W+DH S+SNC DGLID + ST ITISN T+H+ VML G SD + QD MQ+TVAFN
Sbjct: 182 IWVDHCSLSNCADGLIDAILGSTAITISNNFMTHHDKVMLLGHSDEYVQDVNMQVTVAFN 361
Query: 445 HFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVIT 624
HFG GLVQR+PRCR G+FHVVNNDYTHW MYAIGG PTI SQGNR++AP N +K +T
Sbjct: 362 HFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPVNRFSKEVT 541
Query: 625 KH 630
KH
Sbjct: 542 KH 547
Score = 186 bits (400), Expect(2) = 3e-047
Identities = 83/146 (56%), Positives = 96/146 (65%)
Frame = -1 / -1
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
C V +L GA RLPWL++VG + PP+AY+SQCV*SL TTWK P RHLG+RCT P P
Sbjct: 546 CFVTSLEKRLTGARNRLPWLLIVGLALPPIAYISQCV*SLFTTWK*PCRHLGMRCTSPSP 367
Query: 449 KWLKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSI 270
KWLKATV CM+ SC SL P+SMT W V E+VI V+ SM PS+Q D E S
Sbjct: 366 KWLKATVTCMLTSCTYSSLWPRSMTLSWCVIKLFEIVIAVDPRIASMSPSAQFDKEQ*ST 187
Query: 269 QTLVAEKREMPSPSALVREPMCVGES 192
Q L+ K E PSPS LV P C GES
Sbjct: 186 QILLPPKMETPSPSLLVLHP*CPGES 109
Score = 43.7 bits (89), Expect(2) = 7e-086
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1 / +2
Query: 634 AEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
A E W+ W W ++ DL +NGA F SG A
Sbjct: 554 APESAWRQWNWRSDGDLMLNGAFFTQSGAA 643
Score = 23.5 bits (45), Expect(2) = 3e-047
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1 / -1
Query: 119 CTVIPAPLAMCT 84
CTV+ APLAM T
Sbjct: 36 CTVMQAPLAMWT 1
>gb|DR120859.1|DR120859 RTMG1_32_A06.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_32_A06_A029 5', mRNA sequence
Length = 815
Score = 309 bits (670), Expect(2) = 1e-085
Identities = 124/209 (59%), Positives = 155/209 (74%)
Frame = +1 / +1
Query: 1 IFARSMIIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMG 180
IF M+I+L +ELLM+S KTIDGRGA VHIA+GA IT+Q N+IIH + +H+
Sbjct: 109 IFQSDMVIRLKEELLMNSFKTIDGRGADVHIAHGACITIQYVTNIIIHGVSIHECVQAGN 288
Query: 181 GLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHF 360
++R SP H G RT +DGDGIS+F +WIDH S+SNC+DGLID + ST ITISN +F
Sbjct: 289 AMVRASPEHYGWRTVSDGDGISIFGGRYIWIDHCSLSNCKDGLIDAIMGSTAITISNNYF 468
Query: 361 TNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYA 540
++H+ VML G +DS+ D IMQIT+AFN+FG GL+QRMPRCR G+FHVVNN Y HW MYA
Sbjct: 469 SHHDMVMLLGHADSYTNDAIMQITIAFNYFGEGLIQRMPRCRHGYFHVVNNQYAHWEMYA 648
Query: 541 IGGGDAPTIISQGNRYIAPPNIAAKVITK 627
IGG PTI S+GN +IAP N AK +TK
Sbjct: 649 IGGSAKPTINSEGNIFIAPDNANAKEVTK 735
Score = 135 bits (290), Expect(2) = 5e-035
Identities = 73/152 (48%), Positives = 91/152 (59%)
Frame = -1 / -1
Query: 647 TPSSA*CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIR 468
+P+++ LV +LA GAM LP L+MVG + PP+AY+SQC L TT K P HLGI
Sbjct: 755 SPTTSSLLVTSLALALSGAMNMLPSLLMVGLALPPIAYISQCAYWLFTT*KYPCLHLGIL 576
Query: 467 CTRPLPKWLKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLD 288
P PK LKA VIC+I S S P+SMT W K EMV+ V+ S+RPS QL+
Sbjct: 575 *MSPSPK*LKAMVICIIASFV*LSACPRSMTMSWCEK*LFEMVMAVDPMIASIRPSLQLE 396
Query: 287 MEMWSIQTLVAEKREMPSPSALVREPMCVGES 192
E SIQ K E+PSPS V +P C GE+
Sbjct: 395 REQ*SIQI*RPPKIEIPSPSDTVLQP*CSGEA 300
Score = 33.1 bits (66), Expect(2) = 5e-035
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3 / -3
Query: 105 GAVGDVHLRAAPVDGLVAAHEQLLRELDDH 16
GAVG+V++ A+ +D L HE+ E +DH
Sbjct: 213 GAVGNVNVGASAIDCLETVHEEFFFEPNDH 124
Score = 28.6 bits (56), Expect(2) = 1e-085
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1 / +1
Query: 649 WKNWVWHTEDDLFMNGA 699
W W W + DL +NGA
Sbjct: 760 WTQWNWRSAGDLMLNGA 810
>gb|CF399982.1|CF399982 RTWW1_2_B02.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_2_B02_A015 5', mRNA sequence
Length = 585
Score = 317 bits (686), Expect = 1e-085
Identities = 124/191 (64%), Positives = 147/191 (76%)
Frame = +1 / +1
Query: 1 IFARSMIIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMG 180
+F R M+I L +EL+M+S KTIDGRG VHIANG ITVQ N+IIH +HVHD K
Sbjct: 13 VFERDMVITLKEELIMNSFKTIDGRGVNVHIANGPCITVQYVTNIIIHGIHVHDCKPAGN 192
Query: 181 GLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHF 360
++RDSPTH G RT DGDGIS+F +++W+DH+S+SNC DGLID + ST ITISN HF
Sbjct: 193 AMVRDSPTHYGWRTICDGDGISIFGGSHIWVDHVSLSNCADGLIDAIMGSTAITISNNHF 372
Query: 361 TNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYA 540
T+HN+VML G SDS+ D MQ+T+AFNHFG GLVQRMPRCR G+FHVVNNDYTHW MYA
Sbjct: 373 THHNEVMLLGHSDSYTPDVNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYA 552
Query: 541 IGGGDAPTIIS 573
IGG PTI S
Sbjct: 553 IGGSANPTINS 585
Score = 160 bits (345), Expect(2) = 4e-041
Identities = 74/127 (58%), Positives = 87/127 (68%)
Frame = -1 / -2
Query: 572 LMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKWLKATVICMIWSCGQESL 393
L++VG + PP+AY+SQ V*SL TTWK P HLGI CTRP PK L A V CM+ S SL
Sbjct: 584 LLIVGFALPPIAYISQ*V*SLFTTWKYPCLHLGILCTRPSPK*LNAIVTCMLTSGV*LSL 405
Query: 392 APKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALVRE 213
P ++TSLW VKW EMVI V+ SMRPS+QLD E WS Q + K E+PSPS +V
Sbjct: 404 *PNNITSLW*VKWLFEMVIAVDPMMASMRPSAQLDKETWSTQMWLPPKMEIPSPSQIVLH 225
Query: 212 PMCVGES 192
P CVGES
Sbjct: 224 P*CVGES 204
Score = 28.6 bits (56), Expect(2) = 4e-041
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3 / -1
Query: 105 GAVGDVHLRAAPVDGLVAAHEQLLRELDDHGPRED 1
G V +V + A V+ L H+QLL + D H ED
Sbjct: 117 GPVCNVDIDAPSVNCLETVHDQLLLQCDHHVSLED 13
>gb|BQ696543.1|BQ696543 NXPV_042_E02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_042_E02 5' similar to Arabidopsis
thaliana sequence At5g48900 pectate lyase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 629
Score = 310 bits (671), Expect = 1e-083
Identities = 119/194 (61%), Positives = 147/194 (75%)
Frame = +1 / +3
Query: 10 RSMIIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMGGLM 189
R M+I L +EL+M+S KTIDGRG VHIANG ITVQ N+IIH +H+HD + ++
Sbjct: 3 RDMVIMLKEELIMNSYKTIDGRGVNVHIANGPCITVQYVTNIIIHGIHIHDCRPAGNAMV 182
Query: 190 RDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNH 369
R SPTH G RT DGDG+S+F ++VW+DH S+SNC DGLID + +ST ITISN HFT+H
Sbjct: 183 RSSPTHYGWRTMCDGDGVSIFGGSHVWVDHCSLSNCADGLIDAIMASTAITISNNHFTHH 362
Query: 370 NDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGG 549
+ VML G +D++ D+ MQ+T+AFNHFG LVQRMPRCR G+FHVVNNDYTHW MYAIGG
Sbjct: 363 DKVMLLGHNDAYAPDKNMQVTIAFNHFGEXLVQRMPRCRHGYFHVVNNDYTHWEMYAIGG 542
Query: 550 GDAPTIISQGNRYI 591
PTI GNRY+
Sbjct: 543 SANPTINXXGNRYL 584
Score = 152 bits (326), Expect(2) = 9e-041
Identities = 73/130 (56%), Positives = 84/130 (64%)
Frame = -1 / -2
Query: 578 PWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKWLKATVICMIWSCGQE 399
P ++VG + PP+AY+SQ V*SL TT K P RHLG+RCTR PKWLKA V CM S
Sbjct: 571 PXXLIVGLALPPIAYISQ*V*SLFTT*KYPWRHLGMRCTRXSPKWLKAIVTCMFLSGA*A 392
Query: 398 SLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALV 219
SL P+SMT W VK EMVI VE SM PS+QL+ E S QT + K E PSPS +V
Sbjct: 391 SLCPRSMTLSWWVK*LFEMVIAVEAMIASMSPSAQLESEQ*STQTWLPPKIETPSPSHIV 212
Query: 218 REPMCVGESR 189
P CVGE R
Sbjct: 211 LHP*CVGELR 182
Score = 35.9 bits (72), Expect(2) = 9e-041
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1 / -2
Query: 143 WMMTFCASCTVIPAPLAMCTCAPRP 69
WM+ F CTV+ P AM T PRP
Sbjct: 136 WMIMFVTYCTVMQGPFAM*TLTPRP 62
>gb|DR097479.1|DR097479 STRR1_34_H05.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_34_H05_A033 5', mRNA sequence
Length = 799
Score = 287 bits (621), Expect(2) = 2e-083
Identities = 110/173 (63%), Positives = 133/173 (76%)
Frame = +1 / +2
Query: 109 ITVQLAQNVIIHNLHVHDVKHTMGGLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISM 288
IT+Q ++I+H +HVHD K ++RDSPTH G RT DGDGIS+F +++W+DH+S+
Sbjct: 8 ITIQNVSHIIVHGIHVHDCKPAGNAMVRDSPTHYGWRTMCDGDGISIFEGSHIWVDHVSL 187
Query: 289 SNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQ 468
SNC DGLID + ST ITISN HFT+HN+VML G SDS+ D MQIT+A+NHFG GLVQ
Sbjct: 188 SNCADGLIDAIMGSTAITISNNHFTHHNEVMLLGHSDSYTPDVNMQITIAYNHFGEGLVQ 367
Query: 469 RMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVITK 627
RMPRCR G+FHVVNNDYTHW MYAIGG PTI SQGNR+ AP N AK +TK
Sbjct: 368 RMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFSAPDNSLAKEVTK 526
Score = 172 bits (370), Expect = 4e-042
Identities = 82/144 (56%), Positives = 96/144 (66%)
Frame = -1 / -2
Query: 623 VITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKW 444
V +LA + GA P L++VG + PP+AY+SQ V*SL TTWK P HLGI CTRP PKW
Sbjct: 522 VTSLAKLLSGAENLFP*LLIVGFALPPIAYISQ*V*SLFTTWKYPCLHLGILCTRPSPKW 343
Query: 443 LKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQT 264
L A VICM+ S SL P ++TSLW VKW EMVI V+ SMRPS+QLD E S Q
Sbjct: 342 LYAIVICMLTSGV*LSL*PNNITSLW*VKWLFEMVIAVDPMMASMRPSAQLDKET*STQM 163
Query: 263 LVAEKREMPSPSALVREPMCVGES 192
+ K EMPSPS +V P CVGES
Sbjct: 162 WLPSKMEMPSPSHMVLHP*CVGES 91
Score = 43.2 bits (88), Expect(2) = 2e-083
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1 / +2
Query: 601 NIAAKVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSG 717
++A +V + + WK+W W ++ D+ +NGA F PSG
Sbjct: 503 SLAKEVTKRINKDADQWKDWNWRSKGDMMLNGAYFTPSG 619
>gb|AL751061.1|AL751061 AL751061 RS Pinus pinaster cDNA clone RS03F05 similar to PECTATE
LYASE, mRNA sequence
Length = 607
Score = 279 bits (603), Expect(2) = 8e-083
Identities = 107/170 (62%), Positives = 130/170 (76%)
Frame = +1 / +2
Query: 118 QLAQNVIIHNLHVHDVKHTMGGLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNC 297
Q N+IIH +HVHD K ++RDSPTH G RT DGDGIS+F +++W+DH+S+SNC
Sbjct: 2 QYVTNIIIHGIHVHDCKPAGNAMVRDSPTHYGWRTICDGDGISIFGGSHIWVDHVSLSNC 181
Query: 298 EDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMP 477
DGLID + ST ITISN +FT+HN+VML G SDS+ D M++T+A+NHFG GLVQRMP
Sbjct: 182 ADGLIDAIMGSTAITISNSYFTHHNEVMLMGHSDSYTPDVNMRVTIAYNHFGEGLVQRMP 361
Query: 478 RCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVITK 627
RCR G+FHVVNNDYTHW MYAIGG PTI SQGNR+ AP N AK +TK
Sbjct: 362 RCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFSAPANPFAKEVTK 511
Score = 160 bits (344), Expect(2) = 4e-042
Identities = 84/163 (51%), Positives = 99/163 (60%)
Frame = -1 / -2
Query: 623 VITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKW 444
V + A F GA P L++VG + PP+AY+SQ V*SLLTTWK P HLGIRCTRP PKW
Sbjct: 507 VTSFAKGFAGAENLFP*LLIVGFALPPIAYISQ*V*SLLTTWKYPCLHLGIRCTRPSPKW 328
Query: 443 LKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQT 264
L A V + S SL P ++TSLW VK E+VI V+ SMRPS+QLD E WS Q
Sbjct: 327 LYAIVTRIFTSGV*LSL*PINITSLW*VK*LFEIVIAVDPMMASMRPSAQLDKETWSTQM 148
Query: 263 LVAEKREMPSPSALVREPMCVGESRMRPPMVCLTSCTCRLWMM 135
+ E+PSPS +V P CVGES L S T WMM
Sbjct: 147 *LPPNMEIPSPSQMVLHP*CVGESLTMAFPAGLQS*T*MPWMM 19
Score = 49.6 bits (102), Expect(2) = 8e-083
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1 / +2
Query: 607 AAKVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSG 717
A +V + Y + WKNW W ++ DL +NGA F PSG
Sbjct: 494 AKEVTKRVYGDVNEWKNWNWRSKGDLMLNGAYFTPSG 604
Score = 32.2 bits (64), Expect(2) = 4e-042
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1 / -2
Query: 716 PDGLKMAPFMNRSSSVCHTQFFHTPSS 636
PDG+K APF RS QFFH+ +S
Sbjct: 603 PDGVKYAPFSIRSPFDLQFQFFHSFTS 523
>gb|CF669425.1|CF669425 RTCNT1_43_G02.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_43_G02_A029 3', mRNA sequence
Length = 655
Score = 286 bits (620), Expect(2) = 2e-082
Identities = 115/178 (64%), Positives = 135/178 (75%)
Frame = +1 / -2
Query: 10 RSMIIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMGGLM 189
R M+IQL +EL M+S KTIDGRGA VHIANGA ITVQ ++IIH +H+HD K +
Sbjct: 651 RDMVIQLKEELFMNSYKTIDGRGANVHIANGACITVQYVHHIIIHGIHIHDCKPAGNATV 472
Query: 190 RDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNH 369
RDSP H G RTR+DGDG+S+ +N+WIDH S+SNC DGLID V ST ITISN T+H
Sbjct: 471 RDSPGHYGWRTRSDGDGVSIVGGSNIWIDHCSLSNCADGLIDAVLGSTAITISNNFMTHH 292
Query: 370 NDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAI 543
+ VML G SD + QD MQ+TVAFN FG GLVQR+PRCR G+FHVVNNDYTHW MYAI
Sbjct: 291 DKVMLLGHSDEYMQDVNMQVTVAFNRFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAI 118
Score = 155 bits (333), Expect(3) = 7e-046
Identities = 71/125 (56%), Positives = 83/125 (66%)
Frame = -1 / +2
Query: 566 MVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKWLKATVICMIWSCGQESLAP 387
++G+ +AY+SQCV*SL TTWK P RHLG+RCT P PK LKATV CM+ SC SL P
Sbjct: 95 LLGSHFHQIAYISQCV*SLFTTWK*PCRHLGMRCTSPSPKRLKATVTCMLTSCIYSSL*P 274
Query: 386 KSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALVREPM 207
+SMT W V E+VI V+ T SM PS+Q D E WSIQ L+ E PSPS LV P
Sbjct: 275 RSMTLSWCVIKLFEIVIAVDPRTASMSPSAQFDKEQWSIQILLPPTMETPSPSLLVLHP* 454
Query: 206 CVGES 192
C GES
Sbjct: 455 CPGES 469
Score = 40.5 bits (82), Expect(2) = 2e-082
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +1 / -3
Query: 544 GGGDAPTIISQGNRYIAPPNIAAKVITKH 630
GG PTI SQGNR+ AP N +K +TKH
Sbjct: 116 GGSANPTINSQGNRFHAPVNPFSKEVTKH 30
Score = 35.4 bits (71), Expect(3) = 7e-046
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1 / +1
Query: 641 SSA*CLVITLAAMFGGAM*RLPWLMMVGASPPP 543
S++ C V +L GA RLPWL++VG + PP
Sbjct: 19 SASSCFVTSLEKGLTGAWNRLPWLLIVGFALPP 117
Score = 32.7 bits (65), Expect(3) = 7e-046
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3 / +1
Query: 105 GAVGDVHLRAAPVDGLVAAHEQLLRELDDH 16
G VG++ + + + LV HE+L ELDDH
Sbjct: 556 GTVGNMDICTSSIYCLVTVHEKLFFELDDH 645
>gb|DR097773.1|DR097773 STRR1_36_H05.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_36_H05_A033 5', mRNA sequence
Length = 798
Score = 282 bits (611), Expect(2) = 5e-082
Identities = 108/173 (62%), Positives = 132/173 (76%)
Frame = +1 / +2
Query: 109 ITVQLAQNVIIHNLHVHDVKHTMGGLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISM 288
IT+Q ++I+H +HVHD K ++RDSPTH G RT DGDGIS+F +++W+DH+S+
Sbjct: 2 ITIQNVSHIIVHGIHVHDCKPAGNAMVRDSPTHYGWRTMCDGDGISIFEGSHIWVDHVSL 181
Query: 289 SNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQ 468
SNC DGLID + ST ITIS+ HFT+HN+VML G SDS+ D MQIT+A+NHFG GLV
Sbjct: 182 SNCADGLIDAIMGSTAITISDNHFTHHNEVMLLGHSDSYTPDVNMQITIAYNHFGEGLVH 361
Query: 469 RMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVITK 627
RMPRCR G+FHVVNNDYTHW MYAIGG PTI SQGNR+ AP N AK +TK
Sbjct: 362 RMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFSAPDNSLAKEVTK 520
Score = 171 bits (368), Expect = 8e-042
Identities = 82/144 (56%), Positives = 96/144 (66%)
Frame = -1 / -1
Query: 623 VITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKW 444
V +LA + GA P L++VG + PP+AY+SQ V*SL TTWK P HLGI CTRP PKW
Sbjct: 516 VTSLAKLLSGAENLFP*LLIVGFALPPIAYISQ*V*SLFTTWKYPCLHLGILCTRPSPKW 337
Query: 443 LKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQT 264
L A VICM+ S SL P ++TSLW VKW EMVI V+ SMRPS+QLD E S Q
Sbjct: 336 LYAIVICMLTSGV*LSL*PNNITSLW*VKWLSEMVIAVDPMMASMRPSAQLDKET*STQM 157
Query: 263 LVAEKREMPSPSALVREPMCVGES 192
+ K EMPSPS +V P CVGES
Sbjct: 156 WLPSKMEMPSPSHMVLHP*CVGES 85
Score = 43.2 bits (88), Expect(2) = 5e-082
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1 / +2
Query: 601 NIAAKVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSG 717
++A +V + + WK+W W ++ D+ +NGA F PSG
Sbjct: 497 SLAKEVTKRINKDADQWKDWNWRSKGDMMLNGAYFTPSG 613
>gb|CF671517.1|CF671517 RTCNT1_57_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_57_D05_A029 5', mRNA sequence
Length = 792
Score = 280 bits (605), Expect(2) = 2e-081
Identities = 108/174 (62%), Positives = 132/174 (75%)
Frame = +1 / +1
Query: 109 ITVQLAQNVIIHNLHVHDVKHTMGGLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISM 288
ITVQ ++IIH +H+HD K ++RDSP H G RTR+DGDG+S+F +N+W+DH S+
Sbjct: 1 ITVQYVHHIIIHGIHIHDCKPAGNAMVRDSPGHYGWRTRSDGDGVSIFGGSNIWVDHCSL 180
Query: 289 SNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQ 468
SNC DGLID + ST ITISN T+H+ VML G SD + QD MQ+TVAFNHFG GLVQ
Sbjct: 181 SNCADGLIDAILGSTAITISNNFMTHHDKVMLLGHSDEYVQDVNMQVTVAFNHFGEGLVQ 360
Query: 469 RMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVITKH 630
R+PRCR G+FHVVNNDYTHW MYAIGG PTI SQGNR++AP N +K +TKH
Sbjct: 361 RIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPVNRFSKEVTKH 522
Score = 186 bits (400), Expect = 3e-046
Identities = 83/146 (56%), Positives = 96/146 (65%)
Frame = -1 / -2
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
C V +L GA RLPWL++VG + PP+AY+SQCV*SL TTWK P RHLG+RCT P P
Sbjct: 521 CFVTSLEKRLTGARNRLPWLLIVGLALPPIAYISQCV*SLFTTWK*PCRHLGMRCTSPSP 342
Query: 449 KWLKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSI 270
KWLKATV CM+ SC SL P+SMT W V E+VI V+ SM PS+Q D E S
Sbjct: 341 KWLKATVTCMLTSCTYSSLWPRSMTLSWCVIKLFEIVIAVDPRIASMSPSAQFDKEQ*ST 162
Query: 269 QTLVAEKREMPSPSALVREPMCVGES 192
Q L+ K E PSPS LV P C GES
Sbjct: 161 QILLPPKMETPSPSLLVLHP*CPGES 84
Score = 43.7 bits (89), Expect(2) = 2e-081
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1 / +1
Query: 634 AEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
A E W+ W W ++ DL +NGA F SG A
Sbjct: 529 APESAWRQWNWRSDGDLMLNGAFFTQSGAA 618
>gb|CO171062.1|CO171062 NDL1_18_F08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_18_F08_A029 5', mRNA sequence
Length = 802
Score = 277 bits (599), Expect(2) = 6e-081
Identities = 105/171 (61%), Positives = 132/171 (77%)
Frame = +1 / +1
Query: 118 QLAQNVIIHNLHVHDVKHTMGGLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNC 297
Q ++VII+ +H+HD K ++RDSPTH G RTR+DGDG+S+F A N+W+DH S+S+C
Sbjct: 1 QYVKHVIIYGIHIHDCKPGGNAMVRDSPTHYGWRTRSDGDGVSIFGANNIWVDHCSLSSC 180
Query: 298 EDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMP 477
DGLID ++ ST ITISN + + H+ VML G SD + QD MQ+T+AFNHFG GLVQRMP
Sbjct: 181 TDGLIDAIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTIAFNHFGEGLVQRMP 360
Query: 478 RCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVITKH 630
RCR G+FHVVNNDYTHW MYAIGG PTI SQGNR++AP N +K +TKH
Sbjct: 361 RCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSKEVTKH 513
Score = 116 bits (247), Expect(2) = 4e-040
Identities = 51/85 (60%), Positives = 61/85 (71%)
Frame = -1 / -3
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
CLV +L GA RLPWL++VG + PP+AY+SQ V*SL TTWK P RHLG+RCT P P
Sbjct: 512 CLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMRCTSPSP 333
Query: 449 KWLKATVICMIWSCGQESLAPKSMT 375
KWLKA V CM+ S SL P+S+T
Sbjct: 332 KWLKAIVTCMLTS*V*SSLWPRSIT 258
Score = 69.8 bits (146), Expect(2) = 4e-040
Identities = 33/53 (62%), Positives = 34/53 (64%)
Frame = -1 / -3
Query: 350 LEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALVREPMCVGES 192
LEMVI V+ SM PS QLD E WS Q L A K E PSPS LV P CVGES
Sbjct: 233 LEMVIAVDPRMASMSPSVQLDKEQWSTQILFAPKMETPSPSLLVLHP*CVGES 75
Score = 45.1 bits (92), Expect(2) = 6e-081
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1 / +1
Query: 634 AEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
A E W+ W W +E DL +NGA F SG A
Sbjct: 520 APENAWRQWNWRSEGDLMLNGAFFTQSGAA 609
>gb|BX255698.1|BX255698 BX255698 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP008G04 similar to PECTATE LYASE PRECURSOR,
mRNA sequence
Length = 667
Score = 277 bits (599), Expect(2) = 6e-081
Identities = 105/168 (62%), Positives = 131/168 (77%)
Frame = +1 / +1
Query: 127 QNVIIHNLHVHDVKHTMGGLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDG 306
++VIIH +H+HD K ++RDSPTH G RTR+DGDG+S+F A N+W+DH S+S+C DG
Sbjct: 7 KHVIIHGIHIHDCKPGGNTMVRDSPTHYGWRTRSDGDGVSIFGANNIWVDHCSLSSCTDG 186
Query: 307 LIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCR 486
LID ++ ST ITISN + + H+ VML G SD + QD MQ+T+AFNHFG GLVQRMPRCR
Sbjct: 187 LIDAIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTIAFNHFGEGLVQRMPRCR 366
Query: 487 WGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVITKH 630
G+FHVVNNDYTHW MYAIGG PTI SQGNR++AP N +K +TKH
Sbjct: 367 HGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSKEVTKH 510
Score = 116 bits (247), Expect(2) = 4e-040
Identities = 51/85 (60%), Positives = 61/85 (71%)
Frame = -1 / -3
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
CLV +L GA RLPWL++VG + PP+AY+SQ V*SL TTWK P RHLG+RCT P P
Sbjct: 509 CLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMRCTSPSP 330
Query: 449 KWLKATVICMIWSCGQESLAPKSMT 375
KWLKA V CM+ S SL P+S+T
Sbjct: 329 KWLKAIVTCMLTS*V*SSLWPRSIT 255
Score = 69.8 bits (146), Expect(2) = 4e-040
Identities = 33/53 (62%), Positives = 34/53 (64%)
Frame = -1 / -3
Query: 350 LEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALVREPMCVGES 192
LEMVI V+ SM PS QLD E WS Q L A K E PSPS LV P CVGES
Sbjct: 230 LEMVIAVDPRMASMSPSVQLDKEQWSTQILFAPKMETPSPSLLVLHP*CVGES 72
Score = 45.1 bits (92), Expect(2) = 6e-081
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1 / +1
Query: 634 AEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
A E W+ W W +E DL +NGA F SG A
Sbjct: 517 APENAWRQWNWRSEGDLMLNGAFFTQSGAA 606
>gb|BM133679.1|BM133679 NXLV_010_G02_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_010_G02 5' similar to Arabidopsis thaliana
sequence At4g24780 pectate lyase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 807
Score = 271 bits (587), Expect(2) = 3e-079
Identities = 103/164 (62%), Positives = 126/164 (76%)
Frame = +1 / +3
Query: 139 IHNLHVHDVKHTMGGLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDV 318
IH +H+HD K ++RDSPTH G RTR+DGDG+S+F A N+W+DH S+S+C DGLID
Sbjct: 18 IHGIHIHDCKPGGNAMVRDSPTHYGWRTRSDGDGVSIFGANNIWVDHCSLSSCTDGLIDA 197
Query: 319 VQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFF 498
++ ST ITISN + + H+ VML G SD + QD MQ T+AFNHFG GLVQRMPRCR G+F
Sbjct: 198 IRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQATIAFNHFGEGLVQRMPRCRHGYF 377
Query: 499 HVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVITKH 630
HVVNNDYTHW MYAIGG PTI SQGNR++AP N +K +TKH
Sbjct: 378 HVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSKEVTKH 509
Score = 116 bits (247), Expect(2) = 4e-040
Identities = 51/85 (60%), Positives = 61/85 (71%)
Frame = -1 / -3
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
CLV +L GA RLPWL++VG + PP+AY+SQ V*SL TTWK P RHLG+RCT P P
Sbjct: 508 CLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMRCTSPSP 329
Query: 449 KWLKATVICMIWSCGQESLAPKSMT 375
KWLKA V CM+ S SL P+S+T
Sbjct: 328 KWLKAIVACMLTS*V*SSLWPRSIT 254
Score = 69.8 bits (146), Expect(2) = 4e-040
Identities = 33/53 (62%), Positives = 34/53 (64%)
Frame = -1 / -3
Query: 350 LEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALVREPMCVGES 192
LEMVI V+ SM PS QLD E WS Q L A K E PSPS LV P CVGES
Sbjct: 229 LEMVIAVDPRMASMSPSVQLDKEQWSTQILFAPKMETPSPSLLVLHP*CVGES 71
Score = 45.1 bits (92), Expect(2) = 3e-079
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1 / +3
Query: 634 AEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
A E W+ W W +E DL +NGA F SG A
Sbjct: 516 APENAWRQWNWRSEGDLMLNGAFFTQSGAA 605
>gb|CR354745.1|CR354745 CR354745 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 125H08, mRNA sequence
Length = 582
Score = 289 bits (626), Expect = 2e-077
Identities = 112/181 (61%), Positives = 137/181 (75%)
Frame = +1 / +3
Query: 85 VHIANGAGITVQLAQNVIIHNLHVHDVKHTMGGLMRDSPTHIGSRTRADGDGISLFSATN 264
VHIANG ITVQ N+IIH +H+HD + ++R SPTH G RT DGDG+S+F ++
Sbjct: 6 VHIANGPCITVQYVTNIIIHGIHIHDCRPAGNAMVRSSPTHYGWRTMCDGDGVSIFGGSH 185
Query: 265 VWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFN 444
VW+DH S+S C DGLID + +ST ITISN HFT+H+ VML G +D + D+ MQ+T+AFN
Sbjct: 186 VWVDHCSLSKCADGLIDAIMASTAITISNNHFTHHDKVMLLGHNDGYAPDKNMQVTIAFN 365
Query: 445 HFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVIT 624
HFG GLVQRMPRCR G+FHVVNNDYTHW MYAIGG PTI S+GNRY+AP + AK IT
Sbjct: 366 HFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSEGNRYLAPVDRFAKEIT 545
Query: 625 K 627
K
Sbjct: 546 K 548
Score = 161 bits (347), Expect(2) = 6e-043
Identities = 80/145 (55%), Positives = 92/145 (63%)
Frame = -1 / -3
Query: 623 VITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKW 444
VI+LA GA P L++VG + PP+AY+SQ V*SLLTT K P RHLG+RCTRP PKW
Sbjct: 544 VISLAKRSTGARYLFPSLLIVGLALPPIAYISQ*V*SLLTT*KYPWRHLGMRCTRPSPKW 365
Query: 443 LKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQT 264
L A V CM S SL P+SMT W VK EMVI VE SM PS+ L+ E S QT
Sbjct: 364 LNAIVTCMFLSGA*PSLCPRSMTLSWWVK*LFEMVIAVEAMIASMSPSAHLESEQ*STQT 185
Query: 263 LVAEKREMPSPSALVREPMCVGESR 189
+ K E PSPS +V P CVGE R
Sbjct: 184 WLPPKIETPSPSHIVLHP*CVGELR 110
Score = 33.6 bits (67), Expect(2) = 6e-043
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1 / -3
Query: 143 WMMTFCASCTVIPAPLAMCT 84
WM+ F CTV+ P AMCT
Sbjct: 64 WMIMFVTYCTVMQGPFAMCT 5
>gb|CF401342.1|CF401342 RTWW1_11_C09.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_11_C09_A015 5', mRNA sequence
Length = 779
Score = 263 bits (569), Expect(2) = 8e-077
Identities = 100/159 (62%), Positives = 123/159 (77%)
Frame = +1 / +2
Query: 154 VHDVKHTMGGLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSST 333
+HD K ++RDSPTH G RTR+DGDG+S+F A N+W+DH S+S+C DGLID ++ ST
Sbjct: 2 IHDCKPGGNAMVRDSPTHYGWRTRSDGDGVSIFGANNIWVDHCSLSSCTDGLIDAIRGST 181
Query: 334 GITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNN 513
ITISN + + H+ VML G SD + QD MQ+T+AFNHFG GLVQRMPRCR G+FHVVNN
Sbjct: 182 AITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNN 361
Query: 514 DYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVITKH 630
DYTHW MYAIGG PTI SQGNR++AP N +K +TKH
Sbjct: 362 DYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSKEVTKH 478
Score = 116 bits (247), Expect(2) = 4e-040
Identities = 51/85 (60%), Positives = 61/85 (71%)
Frame = -1 / -3
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
CLV +L GA RLPWL++VG + PP+AY+SQ V*SL TTWK P RHLG+RCT P P
Sbjct: 477 CLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMRCTSPSP 298
Query: 449 KWLKATVICMIWSCGQESLAPKSMT 375
KWLKA V CM+ S SL P+S+T
Sbjct: 297 KWLKAIVTCMLTS*V*SSLWPRSIT 223
Score = 69.8 bits (146), Expect(2) = 4e-040
Identities = 33/53 (62%), Positives = 34/53 (64%)
Frame = -1 / -3
Query: 350 LEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALVREPMCVGES 192
LEMVI V+ SM PS QLD E WS Q L A K E PSPS LV P CVGES
Sbjct: 198 LEMVIAVDPRMASMSPSVQLDKEQWSTQILFAPKMETPSPSLLVLHP*CVGES 40
Score = 45.1 bits (92), Expect(2) = 8e-077
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1 / +2
Query: 634 AEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
A E W+ W W +E DL +NGA F SG A
Sbjct: 485 APENAWRQWNWRSEGDLMLNGAFFTQSGAA 574
>gb|BQ633895.1|BQ633895 NXRV062_B09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV062_B09 5' similar to Arabidopsis thaliana
sequence At4g24780 pectate lyase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 657
Score = 169 bits (364), Expect(2) = 1e-076
Identities = 69/116 (59%), Positives = 83/116 (71%)
Frame = +1 / +2
Query: 19 IIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMGGLMRDS 198
+IQL L M+S KTIDGRGA VHIANGA ITVQ ++IIH +H+HD K +RDS
Sbjct: 2 VIQLXXXLFMNSYKTIDGRGANVHIANGACITVQYVHHIIIHGIHIHDCKPAGNATVRDS 181
Query: 199 PTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTN 366
P H G RTR+DGDG+S+ +N+WIDH S+SNC DGLID V ST ITISN T+
Sbjct: 182 PGHYGWRTRSDGDGVSIVGGSNIWIDHCSLSNCADGLIDAVLGSTAITISNNFMTH 349
Score = 138 bits (296), Expect(2) = 1e-076
Identities = 57/85 (67%), Positives = 63/85 (74%)
Frame = +1 / +1
Query: 376 VMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGD 555
VML G SD + QD MQ+TVAFN FG GLVQR+PRCR G+FHVVNNDYTHW MYAIGG
Sbjct: 358 VMLLGHSDEYMQDVNMQVTVAFNRFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSA 537
Query: 556 APTIISQGNRYIAPPNIAAKVITKH 630
PTI SQ NR+ AP N + TKH
Sbjct: 538 NPTINSQSNRFHAPVNPFSXXXTKH 612
Score = 117 bits (251), Expect(3) = 4e-043
Identities = 52/89 (58%), Positives = 62/89 (69%)
Frame = -1 / -2
Query: 641 SSA*CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCT 462
S++ C V GA RL WL++VG + PP+AY+SQCV*SL TTWK P RHLG+RCT
Sbjct: 623 SASSCFVXXXEKGLTGAWNRLLWLLIVGFALPPIAYISQCV*SLFTTWK*PCRHLGMRCT 444
Query: 461 RPLPKWLKATVICMIWSCGQESLAPKSMT 375
P PK LKATV CM+ SC SL P+SMT
Sbjct: 443 SPSPKRLKATVTCMLTSCIYSSL*PRSMT 357
Score = 67.5 bits (141), Expect(3) = 4e-043
Identities = 31/60 (51%), Positives = 36/60 (60%)
Frame = -1 / -1
Query: 371 LWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALVREPMCVGES 192
+W V E+VI V+ T SM PS+Q D E WSIQ L+ E PSPS LV P C GES
Sbjct: 354 IWCVIKLFEIVIAVDPRTASMSPSAQFDKEQWSIQILLPPTMETPSPSLLVLHP*CPGES 175
Score = 29.0 bits (57), Expect(3) = 4e-043
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1 / -1
Query: 140 MMTFCASCTVIPAPLAMCTCAPRP 69
M+ + CTV+ APLA+ T AP P
Sbjct: 123 MIMWWTYCTVMQAPLAIWTFAPLP 52
>gb|CO200608.1|CO200608 GEO2_8_A10.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_8_A10_A032 5', mRNA sequence
Length = 865
Score = 257 bits (555), Expect(2) = 7e-075
Identities = 97/149 (65%), Positives = 119/149 (79%)
Frame = +1 / -1
Query: 184 LMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFT 363
++RDSPTH G RTR+DGDG+S+F A N+W+DH S+S+C DGLID ++ ST ITISN + +
Sbjct: 856 MVRDSPTHYGWRTRSDGDGVSIFGANNIWVDHCSLSSCTDGLIDAIRGSTAITISNNYMS 677
Query: 364 NHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAI 543
H+ VML G SD + QD MQ+T+AFNHFG GLVQRMPRCR G+FHVVNNDYTHW MYAI
Sbjct: 676 QHDKVMLLGHSDDYTQDVNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAI 497
Query: 544 GGGDAPTIISQGNRYIAPPNIAAKVITKH 630
GG PTI SQGNR++AP N +K +TKH
Sbjct: 496 GGSANPTINSQGNRFLAPSNAFSKEVTKH 410
Score = 116 bits (247), Expect(2) = 4e-040
Identities = 51/85 (60%), Positives = 61/85 (71%)
Frame = -1 / +3
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
CLV +L GA RLPWL++VG + PP+AY+SQ V*SL TTWK P RHLG+RCT P P
Sbjct: 411 CLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMRCTSPSP 590
Query: 449 KWLKATVICMIWSCGQESLAPKSMT 375
KWLKA V CM+ S SL P+S+T
Sbjct: 591 KWLKAIVTCMLTS*V*SSLWPRSIT 665
Score = 69.8 bits (146), Expect(2) = 4e-040
Identities = 33/53 (62%), Positives = 34/53 (64%)
Frame = -1 / +3
Query: 350 LEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALVREPMCVGES 192
LEMVI V+ SM PS QLD E WS Q L A K E PSPS LV P CVGES
Sbjct: 690 LEMVIAVDPRMASMSPSVQLDKEQWSTQILFAPKMETPSPSLLVLHP*CVGES 848
Score = 45.1 bits (92), Expect(2) = 7e-075
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1 / -1
Query: 634 AEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
A E W+ W W +E DL +NGA F SG A
Sbjct: 403 APENAWRQWNWRSEGDLMLNGAFFTQSGAA 314
>gb|DR117495.1|DR117495 RTMG1_7_G09.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_G09_A029 3', mRNA sequence
Length = 878
Score = 253 bits (547), Expect(2) = 9e-074
Identities = 96/149 (64%), Positives = 118/149 (79%)
Frame = +1 / +2
Query: 184 LMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFT 363
++RDSPTH G RTR+D DG+S+F A N+W+DH S+S+C DGLID ++ ST ITISN + +
Sbjct: 2 MVRDSPTHYGWRTRSDEDGVSIFGANNIWVDHCSLSSCTDGLIDAIRGSTAITISNNYMS 181
Query: 364 NHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAI 543
H+ VML G SD + QD MQ+T+AFNHFG GLVQRMPRCR G+FHVVNNDYTHW MYAI
Sbjct: 182 QHDKVMLLGHSDDYTQDVNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAI 361
Query: 544 GGGDAPTIISQGNRYIAPPNIAAKVITKH 630
GG PTI SQGNR++AP N +K +TKH
Sbjct: 362 GGSANPTINSQGNRFLAPSNAFSKEVTKH 448
Score = 116 bits (247), Expect(2) = 5e-039
Identities = 51/85 (60%), Positives = 61/85 (71%)
Frame = -1 / -3
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
CLV +L GA RLPWL++VG + PP+AY+SQ V*SL TTWK P RHLG+RCT P P
Sbjct: 447 CLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMRCTSPSP 268
Query: 449 KWLKATVICMIWSCGQESLAPKSMT 375
KWLKA V CM+ S SL P+S+T
Sbjct: 267 KWLKAIVTCMLTS*V*SSLWPRSIT 193
Score = 66.1 bits (138), Expect(2) = 5e-039
Identities = 32/53 (60%), Positives = 33/53 (62%)
Frame = -1 / -3
Query: 350 LEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALVREPMCVGES 192
LEMVI V+ SM PS QLD E WS Q L A K E PS S LV P CVGES
Sbjct: 168 LEMVIAVDPRMASMSPSVQLDKEQWSTQILFAPKMETPSSSLLVLHP*CVGES 10
Score = 45.1 bits (92), Expect(2) = 9e-074
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1 / +2
Query: 634 AEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
A E W+ W W +E DL +NGA F SG A
Sbjct: 455 APENAWRQWNWRSEGDLMLNGAFFTQSGAA 544
>gb|CF478224.1|CF478224 RTWW3_19_G08.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_19_G08_A022 5', mRNA sequence
Length = 764
Score = 256 bits (553), Expect(2) = 9e-074
Identities = 97/145 (66%), Positives = 118/145 (81%)
Frame = +1 / +1
Query: 193 DSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHN 372
DSPTH G RT DGDGIS+F ++VW+DH+S++NC DGLID + +ST ITISN +FTNHN
Sbjct: 1 DSPTHYGCRTICDGDGISIFGGSHVWVDHVSLANCADGLIDAIMASTAITISNSYFTNHN 180
Query: 373 DVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGG 552
+VML G SDS+ D M++TVA+NHFG GL+QRMPRCR G+FHVVNNDYTHW MYAIGG
Sbjct: 181 EVMLLGHSDSYTPDVNMRVTVAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGS 360
Query: 553 DAPTIISQGNRYIAPPNIAAKVITK 627
PTI SQGNR++AP N +AK +TK
Sbjct: 361 ANPTINSQGNRFLAPANPSAKEVTK 435
Score = 162 bits (348), Expect(2) = 1e-040
Identities = 78/143 (54%), Positives = 94/143 (65%)
Frame = -1 / -1
Query: 623 VITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKW 444
V + A F GA LP L+MVG + PP+AY+SQ V*SL TTWK P HLGIRC RP PKW
Sbjct: 431 VTSFAEGFAGAKNLLP*LLMVGFALPPIAYISQ*V*SLFTTWKYPCLHLGIRCIRPSPKW 252
Query: 443 LKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQT 264
L ATV + S SL P ++TSLWLVK E+VI V+ S+RPS+QL E WS QT
Sbjct: 251 LYATVTRIFTSGV*LSL*PNNITSLWLVK*LFEIVIAVDAMMASIRPSAQLANETWSTQT 72
Query: 263 LVAEKREMPSPSALVREPMCVGE 195
+ K ++PSPS +V P CVGE
Sbjct: 71 WLPPKMDIPSPSQIVLHP*CVGE 3
Score = 42.3 bits (86), Expect(2) = 9e-074
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1 / +1
Query: 607 AAKVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSG 717
A +V + Y WK W W ++ D+ +NGA F PSG
Sbjct: 418 AKEVTKRIYGHVDQWKYWNWRSKGDMMLNGAYFVPSG 528
Score = 25.4 bits (49), Expect(2) = 1e-040
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1 / -1
Query: 716 PDGLKMAPFMNRSSSVCHTQFFH 648
PDG K APF S Q+FH
Sbjct: 527 PDGTKYAPFSIISPFDLQFQYFH 459
>gb|DR168990.1|DR168990 RTPHOS1_29_E12.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_29_E12_A029 3', mRNA sequence
Length = 735
Score = 250 bits (540), Expect(2) = 8e-073
Identities = 95/148 (64%), Positives = 118/148 (79%)
Frame = +1 / -1
Query: 184 LMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFT 363
++R SPTH G RT DGDG+S+F ++VW+DH S+SNC DGLID + +ST ITISN HFT
Sbjct: 720 MVRSSPTHYGWRTMCDGDGVSIFGGSHVWVDHCSLSNCADGLIDAIMASTAITISNNHFT 541
Query: 364 NHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAI 543
+H+ VML G +D++ D+ MQ+T+AFNHFG GLVQRMPRCR G+FHVVNNDYTHW MYAI
Sbjct: 540 HHDKVMLLGHNDAYAPDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAI 361
Query: 544 GGGDAPTIISQGNRYIAPPNIAAKVITK 627
GG PTI S+GNRY+AP + AK +TK
Sbjct: 360 GGSANPTINSEGNRYLAPVDRFAKEVTK 277
Score = 162 bits (348), Expect(2) = 4e-041
Identities = 80/145 (55%), Positives = 92/145 (63%)
Frame = -1 / +2
Query: 623 VITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKW 444
V +LA GA P L++VG + PP+AY+SQ V*SL TT K P RHLG+RCTRP PKW
Sbjct: 281 VTSLAKRSTGARYLFPSLLIVGLALPPIAYISQ*V*SLFTT*KYPWRHLGMRCTRPSPKW 460
Query: 443 LKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQT 264
LKA V CM S SL P+SMT W VK EMVI VE SM PS+QL+ E S QT
Sbjct: 461 LKAIVTCMFLSGA*ASLCPRSMTLSWWVK*LFEMVIAVEAMIASMSPSAQLESEQ*STQT 640
Query: 263 LVAEKREMPSPSALVREPMCVGESR 189
+ K E PSPS +V P CVGE R
Sbjct: 641 WLPPKIETPSPSHIVLHP*CVGELR 715
Score = 45.1 bits (92), Expect(2) = 8e-073
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1 / -1
Query: 607 AAKVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSG 717
A +V + G WKNW W ++ DLF+NGA F SG
Sbjct: 294 AKEVTKRVETPHGRWKNWNWRSQGDLFLNGAYFINSG 184
Score = 27.2 bits (53), Expect(2) = 4e-041
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1 / +2
Query: 716 PDGLKMAPFMNRSSSVCHTQFFHTP 642
P+ +K AP N+S QFFH P
Sbjct: 185 PELMKYAPLRNKSP*DLQFQFFHLP 259
>gb|DR069223.1|DR069223 RTDK1_5_E09.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_5_E09_A029 5', mRNA sequence
Length = 877
Score = 221 bits (476), Expect(4) = 9e-072
Identities = 87/132 (65%), Positives = 104/132 (78%)
Frame = +1 / -2
Query: 232 GDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQ 411
GDGIS+ +A ++W+DH SMSNCEDGLID V++ST ITISN +FT+HN VML G SD
Sbjct: 756 GDGISISTARHIWVDHCSMSNCEDGLIDAVKASTYITISNNYFTHHNKVMLLGHSDDHHH 577
Query: 412 DQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYI 591
D++MQ TVA NHFG GLVQRMPRCR+G+FHV NNDYT W MYAIGG PTI+SQGNR++
Sbjct: 576 DKVMQATVALNHFGEGLVQRMPRCRFGYFHVFNNDYTEWGMYAIGGSSNPTILSQGNRFM 397
Query: 592 APPNIAAKVITK 627
A N K +TK
Sbjct: 396 ASGNPMVKEVTK 361
Score = 162 bits (348), Expect(2) = 1e-045
Identities = 77/132 (58%), Positives = 87/132 (65%)
Frame = -1 / +2
Query: 626 LVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPK 447
LV +L F AM LP L MVG PPMAY+ V*SLL TWK P RHLGIRCTRP PK
Sbjct: 362 LVTSLTMGFPDAMNLLP*LSMVGFELPPMAYIPHSV*SLLNTWKYPNRHLGIRCTRPSPK 541
Query: 446 WLKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQ 267
WL ATV C+ S SL P ++T LW VK LEMVI V+ T SMRPSSQLD+E WS
Sbjct: 542 WLSATVACITLS*WWSSL*PNNITLLW*VK*LLEMVI*VDALTASMRPSSQLDIEQWSTH 721
Query: 266 TLVAEKREMPSP 231
+A + E+PSP
Sbjct: 722 MCLAVEIEIPSP 757
Score = 46.4 bits (95), Expect(4) = 9e-072
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1 / -2
Query: 613 KVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSG 717
+V + + E WK W W +EDD +NGA F PSG
Sbjct: 372 EVTKRQNSTESEWKKWNWISEDDALLNGAYFTPSG 268
Score = 41.8 bits (85), Expect(2) = 1e-045
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = -1 / +2
Query: 716 PDGLKMAPFMNRSSSVCHTQFFHTPSSA*CLVITLAAM 603
PDG+K APF + SSS FFH+ S CL++T M
Sbjct: 269 PDGVKYAPFSSASSSDIQFHFFHSLSVEFCLLVTSLTM 382
Score = 32.7 bits (65), Expect(4) = 9e-072
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1 / -3
Query: 112 TVQLAQNVIIHNLHVHDVK 168
T++ A N+IIH +H+HD K
Sbjct: 875 TIKHATNIIIHGIHIHDCK 819
Score = 29.0 bits (57), Expect(4) = 9e-072
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1 / -2
Query: 754 KPKPGTYVTRLTRFSGTLSCCTGKPC* 834
+PK V +TR +G LSC G C*
Sbjct: 228 RPKSSAVVEEITRNAGVLSCKKGTRC* 148
>gb|CF402186.1|CF402186 RTWW1_20_F02.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_20_F02_A015 5', mRNA sequence
Length = 785
Score = 246 bits (531), Expect(2) = 9e-071
Identities = 97/146 (66%), Positives = 113/146 (77%)
Frame = +1 / +2
Query: 193 DSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHN 372
DSP H G RTR+DGDG+S+ +N+WIDH S+SNC DGLID V ST ITISN T+H+
Sbjct: 26 DSPGHYGWRTRSDGDGVSIVGGSNIWIDHCSLSNCSDGLIDAVLGSTAITISNNFMTHHD 205
Query: 373 DVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGG 552
VML G SD + QD MQ+TVAFNHFG GLVQR+PRCR G+FHVVNNDYTHW MYAIGG
Sbjct: 206 KVMLLGHSDEYVQDAKMQVTVAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGS 385
Query: 553 DAPTIISQGNRYIAPPNIAAKVITKH 630
PTI SQGNR++AP N +K +TKH
Sbjct: 386 ANPTINSQGNRFLAPVNRFSKEVTKH 463
Score = 193 bits (416), Expect(2) = 2e-049
Identities = 85/146 (58%), Positives = 97/146 (66%)
Frame = -1 / -3
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
C V +L GA RLPWL++VG + PP+AY+SQCV*SL TTWK P RHLG+RCT P P
Sbjct: 462 CFVTSLEKRLTGARNRLPWLLIVGFALPPIAYISQCV*SLFTTWK*PCRHLGMRCTSPSP 283
Query: 449 KWLKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSI 270
KWLKATV C++ SC SL P+SMT W V E+VI VE T SM PS Q D E WSI
Sbjct: 282 KWLKATVTCILASCTYSSLWPRSMTLSWCVIKLFEIVIAVEPRTASMSPSEQFDKEQWSI 103
Query: 269 QTLVAEKREMPSPSALVREPMCVGES 192
Q L+ E PSPS LV P C GES
Sbjct: 102 QILLPPTMETPSPSLLVLHP*CPGES 25
Score = 42.3 bits (86), Expect(2) = 9e-071
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1 / +2
Query: 634 AEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
A E W+ W W ++ DL +NGA F +G A
Sbjct: 470 APESAWRRWNWRSDGDLLLNGAFFTQTGAA 559
Score = 24.0 bits (46), Expect(2) = 2e-049
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -1 / -3
Query: 722 APPDGLKMAPFMNRSSSVCHTQFFHTPSSA*CLVIT 615
A P +K APF NRS S H S A +T
Sbjct: 558 AAPV*VKKAPFNNRSPSDLQFHRLHALSGASSCFVT 451
>gb|CF478684.1|CF478684 RTWW3_16_H09.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_16_H09_A022 5', mRNA sequence
Length = 770
Score = 236 bits (510), Expect(2) = 6e-070
Identities = 92/148 (62%), Positives = 114/148 (77%)
Frame = +1 / -3
Query: 184 LMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFT 363
++RDSP H G RT +DGDG+S+F A+++W+DH S+S+C GLID + ST ITISN T
Sbjct: 759 MVRDSPDHYGWRTISDGDGVSIFGASHIWVDHCSLSSCTVGLIDAIMGSTAITISNNFMT 580
Query: 364 NHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAI 543
+H+ VML G +D + D MQ+TVAFNHFG GLVQRMPRCR G+FHVVNNDYTHW MYAI
Sbjct: 579 HHDKVMLLGHNDDYTPDVNMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAI 400
Query: 544 GGGDAPTIISQGNRYIAPPNIAAKVITK 627
GG PTI SQGNR++AP N +K +TK
Sbjct: 399 GGSANPTINSQGNRFLAPVNRFSKEVTK 316
Score = 171 bits (368), Expect(2) = 2e-043
Identities = 82/144 (56%), Positives = 93/144 (64%)
Frame = -1 / +2
Query: 623 VITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKW 444
V +L GA RLPWL++VG + PPMAY+SQCV*SL TTWK P RHLGI CTRP PKW
Sbjct: 320 VTSLEKRLTGARNRLPWLLIVGFALPPMAYISQCV*SLFTTWK*PCRHLGILCTRPSPKW 499
Query: 443 LKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQT 264
LKATV CM+ S SL P+SMT W V EMVI V+ SM P+ QLD E S Q
Sbjct: 500 LKATVTCMLTSGV*SSLWPRSMTLSWCVIKLFEMVIAVDPIMASMSPTVQLDKEQ*STQI 679
Query: 263 LVAEKREMPSPSALVREPMCVGES 192
+A K E PSPS +V P GES
Sbjct: 680 WLAPKMETPSPSLIVLHP**SGES 751
Score = 49.2 bits (101), Expect(2) = 6e-070
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1 / -3
Query: 613 KVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSG 717
+V + Y + +W++W W +E DL +NGA F PSG
Sbjct: 327 EVTKREYTPKSIWRHWNWRSEGDLMLNGAFFVPSG 223
Score = 25.8 bits (50), Expect(2) = 2e-043
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1 / +2
Query: 716 PDGLKMAPFMNRSSSVCHTQFFH 648
PDG K APF RS S Q H
Sbjct: 224 PDGTKNAPFNIRSPSDLQFQCLH 292
>gb|BG040297.1|BG040297 NXSI_110_G02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_G02 5' similar to Arabidopsis thaliana
sequence At3g24670 pectate lyase, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 569
Score = 239 bits (517), Expect = 2e-062
Identities = 91/148 (61%), Positives = 112/148 (75%)
Frame = +1 / +3
Query: 184 LMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFT 363
++RDSPTH G RT DGDGIS+F +++W+DH+S+SNC DGLID + ST ITISN +FT
Sbjct: 81 MVRDSPTHYGWRTICDGDGISIFGGSHIWVDHVSLSNCADGLIDAIMGSTAITISNSYFT 260
Query: 364 NHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAI 543
+HN+VML G SDS+ D M++T+A+NHFG L+QRMPRC G+FH VNNDYTHW MYAI
Sbjct: 261 HHNEVMLMGHSDSYTPDVNMRVTIAYNHFGEXLIQRMPRCXHGYFHXVNNDYTHWEMYAI 440
Query: 544 GGGDAPTIISQGNRYIAPPNIAAKVITK 627
GG PT S GNR+ AP N AK TK
Sbjct: 441 GGSANPTXXSXGNRFSAPANPFAKXXTK 524
Score = 146 bits (313), Expect = 3e-034
Identities = 75/144 (52%), Positives = 86/144 (59%)
Frame = -1 / -2
Query: 623 VITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKW 444
V A F GA P L VG + PP+AY+SQ V*SL T WK P HLGIRC R PKW
Sbjct: 520 VXXFAKGFAGAENLFPXLXXVGFALPPIAYISQ*V*SLFTXWKYPXLHLGIRCIRXSPKW 341
Query: 443 LKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQT 264
L A V + S SL P ++TSLW VK EMVI V+ SMRPS+QLD E WS Q
Sbjct: 340 LYAIVTRIFTSGV*LSL*PINITSLW*VK*LFEMVIAVDPMMASMRPSAQLDKETWSTQM 161
Query: 263 LVAEKREMPSPSALVREPMCVGES 192
+ E+PSPS +V P CVGES
Sbjct: 160 *LPPNIEIPSPSQMVLHP*CVGES 89
>gb|CF400336.1|CF400336 RTWW1_4_C07.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_4_C07_A015 5', mRNA sequence
Length = 788
Score = 213 bits (460), Expect(2) = 7e-062
Identities = 81/125 (64%), Positives = 98/125 (78%)
Frame = +1 / -3
Query: 256 ATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITV 435
A N+W+DH S+S+C DGLID ++ ST ITISN + + H+ VML G SD + QD MQ+T+
Sbjct: 786 ANNIWVDHCSLSSCTDGLIDAIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTI 607
Query: 436 AFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAK 615
AFNHFG GLVQRMPRCR G+FHVVNNDYTHW MYAIGG PTI SQGNR++AP N +K
Sbjct: 606 AFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSK 427
Query: 616 VITKH 630
+TKH
Sbjct: 426 EVTKH 412
Score = 116 bits (247), Expect(2) = 3e-031
Identities = 51/85 (60%), Positives = 61/85 (71%)
Frame = -1 / +2
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
CLV +L GA RLPWL++VG + PP+AY+SQ V*SL TTWK P RHLG+RCT P P
Sbjct: 413 CLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMRCTSPSP 592
Query: 449 KWLKATVICMIWSCGQESLAPKSMT 375
KWLKA V CM+ S SL P+S+T
Sbjct: 593 KWLKAIVTCMLTS*V*SSLWPRSIT 667
Score = 45.1 bits (92), Expect(2) = 7e-062
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1 / -3
Query: 634 AEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
A E W+ W W +E DL +NGA F SG A
Sbjct: 405 APENAWRQWNWRSEGDLMLNGAFFTQSGAA 316
Score = 40.0 bits (81), Expect(2) = 3e-031
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = -1 / +2
Query: 350 LEMVIPVELCTTSMRPSSQLDMEMWSIQTLVA 255
LEMVI V+ SM PS QLD E WS Q L A
Sbjct: 692 LEMVIAVDPRMASMSPSVQLDKEQWSTQILFA 787
>gb|CV033562.1|CV033562 RTNACL1_35_F12.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_35_F12_A029 3', mRNA sequence
Length = 812
Score = 211 bits (456), Expect(2) = 3e-061
Identities = 80/123 (65%), Positives = 97/123 (78%)
Frame = +1 / +1
Query: 262 NVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAF 441
N+W+DH S+S+C DGLID ++ ST ITISN + + H+ VML G SD + QD MQ+T+AF
Sbjct: 4 NIWVDHCSLSSCTDGLIDAIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTIAF 183
Query: 442 NHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVI 621
NHFG GLVQRMPRCR G+FHVVNNDYTHW MYAIGG PTI SQGNR++AP N +K +
Sbjct: 184 NHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSKEV 363
Query: 622 TKH 630
TKH
Sbjct: 364 TKH 372
Score = 116 bits (247), Expect(2) = 8e-031
Identities = 51/85 (60%), Positives = 61/85 (71%)
Frame = -1 / -1
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
CLV +L GA RLPWL++VG + PP+AY+SQ V*SL TTWK P RHLG+RCT P P
Sbjct: 371 CLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMRCTSPSP 192
Query: 449 KWLKATVICMIWSCGQESLAPKSMT 375
KWLKA V CM+ S SL P+S+T
Sbjct: 191 KWLKAIVTCMLTS*V*SSLWPRSIT 117
Score = 45.1 bits (92), Expect(2) = 3e-061
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1 / +1
Query: 634 AEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
A E W+ W W +E DL +NGA F SG A
Sbjct: 379 APENAWRQWNWRSEGDLMLNGAFFTQSGAA 468
Score = 38.6 bits (78), Expect(2) = 8e-031
Identities = 18/30 (60%), Positives = 19/30 (63%)
Frame = -1 / -1
Query: 350 LEMVIPVELCTTSMRPSSQLDMEMWSIQTL 261
LEMVI V+ SM PS QLD E WS Q L
Sbjct: 92 LEMVIAVDPRMASMSPSVQLDKEQWSTQIL 3
>gb|DR017596.1|DR017596 STRS1_17_G04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_G04_A034 3', mRNA sequence
Length = 761
Score = 199 bits (428), Expect(3) = 6e-061
Identities = 80/118 (67%), Positives = 92/118 (77%)
Frame = +1 / +1
Query: 274 DHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFNHFG 453
DH SMSNCEDGLID V++ST ITISN +FT+HN VML G SD D++MQ TVA NHFG
Sbjct: 1 DHCSMSNCEDGLIDAVKASTYITISNNYFTHHNKVMLLGHSDDHHHDKVMQATVALNHFG 180
Query: 454 RGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVITK 627
GLVQRMPRCR+G+FHV NNDYT W MYAIGG PTI+SQGNR++A N K +TK
Sbjct: 181 EGLVQRMPRCRFGYFHVFNNDYTEWGMYAIGGSSNPTILSQGNRFMASGNPMVKEVTK 354
Score = 150 bits (322), Expect(2) = 2e-042
Identities = 71/117 (60%), Positives = 78/117 (66%)
Frame = -1 / -1
Query: 626 LVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPK 447
LV +L F AM LP L MVG PPMAY+ V*SLL TWK P RHLGIRCTRP PK
Sbjct: 353 LVTSLTMGFPDAMNLLP*LSMVGFELPPMAYIPHSV*SLLNTWKYPNRHLGIRCTRPSPK 174
Query: 446 WLKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMW 276
WL ATV C+ S SL P ++T LW VK LEMVI V+ T SMRPSSQLD+E W
Sbjct: 173 WLSATVACITLS*WWSSL*PNNITLLW*VK*LLEMVI*VDALTASMRPSSQLDIEQW 3
Score = 46.4 bits (95), Expect(3) = 6e-061
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1 / +1
Query: 613 KVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSG 717
+V + + E WK W W +EDD +NGA F PSG
Sbjct: 343 EVTKRQNSAESEWKKWNWISEDDALLNGAYFTPSG 447
Score = 43.2 bits (88), Expect(2) = 2e-042
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -1 / -1
Query: 716 PDGLKMAPFMNRSSSVCHTQFFHTPSSA*CLVITLAAM 603
PDG+K APF + SSS FFH+ S+ CL++T M
Sbjct: 446 PDGVKYAPFSSASSSDIQFHFFHSLSAEFCLLVTSLTM 333
Score = 29.0 bits (57), Expect(3) = 6e-061
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1 / +1
Query: 754 KPKPGTYVTRLTRFSGTLSCCTGKPC* 834
+PK V +TR +G LSC G C*
Sbjct: 487 RPKSSAVVEEITRNAGVLSCKKGTRC* 567
>gb|DR100690.1|DR100690 STRR1_66_H02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_66_H02_A033 5', mRNA sequence
Length = 816
Score = 221 bits (477), Expect(2) = 7e-061
Identities = 84/136 (61%), Positives = 106/136 (77%)
Frame = +1 / +1
Query: 220 TRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASD 399
T +DGDGIS+F +W+DH S+S C DGLID + ST ITISN +FT+H++VML G SD
Sbjct: 1 TVSDGDGISIFGGRYIWVDHCSLSKCNDGLIDAIMGSTAITISNNYFTHHDEVMLLGHSD 180
Query: 400 SWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQG 579
S+ QD IMQ+T+AFN+FG GL+QRMPRCR G+FHVVNN Y HW MYAIGG PTI S+G
Sbjct: 181 SYVQDVIMQVTIAFNYFGEGLIQRMPRCRHGYFHVVNNQYAHWEMYAIGGSANPTINSEG 360
Query: 580 NRYIAPPNIAAKVITK 627
N+++AP + AK +TK
Sbjct: 361 NKFLAPDDDNAKEVTK 408
Score = 127 bits (271), Expect(2) = 2e-030
Identities = 68/133 (51%), Positives = 80/133 (60%)
Frame = -1 / -2
Query: 626 LVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPK 447
LV +LA GA LP L++VG + PP+AY+SQC L TT K P RHLGI P PK
Sbjct: 407 LVTSLALSSSGAKNLLPSLLIVGLALPPIAYISQCAYWLFTT*KYPCRHLGILWISPSPK 228
Query: 446 WLKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQ 267
LKA V C+I SC SL P+SMTS VK EMV+ V+ S+RPS L+ E WS Q
Sbjct: 227 *LKAIVTCIITSCT*LSL*PRSMTSS*CVK*LFEMVMAVDPMIASIRPSLHLEREQWSTQ 48
Query: 266 TLVAEKREMPSPS 228
K EMPSPS
Sbjct: 47 I*RPPKIEMPSPS 9
Score = 34.1 bits (68), Expect(2) = 7e-061
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1 / +1
Query: 649 WKNWVWHTEDDLFMNGAIFNPSG 717
W W W + DL +NGA F SG
Sbjct: 433 WTQWNWRSAGDLMLNGAFFVASG 501
Score = 26.3 bits (51), Expect(2) = 2e-030
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1 / -2
Query: 716 PDGLKMAPFMNRSSSVCHTQFFHTPSSA*CLVITLAAM 603
PD K APF RS + H+ A L++T A+
Sbjct: 500 PDATKKAPFSIRSPADLQFHCVHSSGPASSLLVTSLAL 387
>gb|CF474563.1|CF474563 RTWW2_9_G09.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_9_G09_A021 5', mRNA sequence
Length = 758
Score = 232 bits (502), Expect = 3e-060
Identities = 91/151 (60%), Positives = 116/151 (76%)
Frame = +1 / +3
Query: 1 IFARSMIIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMG 180
IF R M+IQL +EL+M+S KTIDGRGA VHIANG ITVQ ++VIIH +H+HD K
Sbjct: 306 IFERDMVIQLKEELIMNSYKTIDGRGANVHIANGPCITVQYVKHVIIHGIHIHDCKPGGN 485
Query: 181 GLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHF 360
++RDSPTH G RTR+DGDG+S+F A N+W+DH S+S+C DGLID ++ ST ITISN +
Sbjct: 486 AMVRDSPTHYGWRTRSDGDGVSIFGANNIWVDHCSLSSCTDGLIDAIRGSTAITISNNYM 665
Query: 361 TNHNDVMLFGASDSWPQDQIMQITVAFNHFG 453
+ H+ VML G SD + QD MQ+T+AFNHFG
Sbjct: 666 SQHDKVMLLGHSDDYTQDVNMQVTIAFNHFG 758
Score = 69.8 bits (146), Expect(3) = 6e-023
Identities = 33/53 (62%), Positives = 34/53 (64%)
Frame = -1 / -2
Query: 350 LEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALVREPMCVGES 192
LEMVI V+ SM PS QLD E WS Q L A K E PSPS LV P CVGES
Sbjct: 655 LEMVIAVDPRMASMSPSVQLDKEQWSTQILFAPKMETPSPSLLVLHP*CVGES 497
Score = 41.4 bits (84), Expect(3) = 6e-023
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = -3 / -1
Query: 99 VGDVHLRAAPVDGLVAAHEQLLRELDDHGPRED 1
VGDV + A+ VD LV H++LL ELDDH +D
Sbjct: 404 VGDVDIGASAVDCLVTVHDKLLFELDDHVSLKD 306
Score = 34.5 bits (69), Expect(3) = 6e-023
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -1 / -2
Query: 452 PKWLKATVICMIWSCGQESLAPKSMT 375
PKWLKA V CM+ S SL P+S+T
Sbjct: 757 PKWLKAIVTCMLTS*V*SSLWPRSIT 680
>gb|BE761988.1|BE761988 NXCI_075_F07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_075_F07 5' similar to Arabidopsis
thaliana sequence At4g24780 pectate lyase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 393
Score = 232 bits (501), Expect = 4e-060
Identities = 87/130 (66%), Positives = 105/130 (80%)
Frame = +1 / +3
Query: 199 PTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDV 378
PTH G RT DGDG+S+F ++VW+DH S+SNC DGLID + +ST ITISN HFT+H+ V
Sbjct: 3 PTHYGWRTMCDGDGVSIFGGSHVWVDHCSLSNCADGLIDAIMASTAITISNNHFTHHDKV 182
Query: 379 MLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDA 558
ML G +D++ D+ MQ+T+AFNHFG GLVQRMPRCR G+FHVVNNDYTHW MYAIGG
Sbjct: 183 MLLGHNDAYAPDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAN 362
Query: 559 PTIISQGNRY 588
PTI S+GNRY
Sbjct: 363 PTINSEGNRY 392
Score = 157 bits (337), Expect = 2e-037
Identities = 74/127 (58%), Positives = 85/127 (66%)
Frame = -1 / -3
Query: 578 PWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKWLKATVICMIWSCGQE 399
P L++VG + PP+AY+SQ V*SL TT K P RHLG+RCTRP PKWLKA V CM S
Sbjct: 382 PSLLIVGLALPPIAYISQ*V*SLFTT*KYPWRHLGMRCTRPSPKWLKAIVTCMFLSGA*A 203
Query: 398 SLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQTLVAEKREMPSPSALV 219
SL P+SMT W VK EMVI VE SMRPS+QL+ E S QT + K E PSPS +V
Sbjct: 202 SLCPRSMTLSWWVK*LFEMVIAVEAMIASMRPSAQLESEQ*STQTWLPPKIETPSPSHIV 23
Query: 218 REPMCVG 198
P CVG
Sbjct: 22 LHP*CVG 2
>gb|DR161241.1|DR161241 RTFE1_10_E01.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_E01_A029 5', mRNA sequence
Length = 791
Score = 207 bits (447), Expect(2) = 5e-060
Identities = 79/121 (65%), Positives = 95/121 (78%)
Frame = +1 / -2
Query: 268 WIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFNH 447
W+DH S+S+C DGLID ++ ST ITISN + + H+ VML G SD + QD MQ+T+AFNH
Sbjct: 790 WVDHCSLSSCTDGLIDAIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTIAFNH 611
Query: 448 FGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVITK 627
FG GLVQRMPRCR G+FHVVNNDYTHW MYAIGG PTI SQGNR++AP N +K +TK
Sbjct: 610 FGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSKEVTK 431
Query: 628 H 630
H
Sbjct: 430 H 428
Score = 116 bits (247), Expect(2) = 2e-030
Identities = 51/85 (60%), Positives = 61/85 (71%)
Frame = -1 / +3
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
CLV +L GA RLPWL++VG + PP+AY+SQ V*SL TTWK P RHLG+RCT P P
Sbjct: 429 CLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMRCTSPSP 608
Query: 449 KWLKATVICMIWSCGQESLAPKSMT 375
KWLKA V CM+ S SL P+S+T
Sbjct: 609 KWLKAIVTCMLTS*V*SSLWPRSIT 683
Score = 45.1 bits (92), Expect(2) = 5e-060
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1 / -2
Query: 634 AEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
A E W+ W W +E DL +NGA F SG A
Sbjct: 421 APENAWRQWNWRSEGDLMLNGAFFTQSGAA 332
Score = 37.3 bits (75), Expect(2) = 2e-030
Identities = 17/28 (60%), Positives = 18/28 (64%)
Frame = -1 / +3
Query: 350 LEMVIPVELCTTSMRPSSQLDMEMWSIQ 267
LEMVI V+ SM PS QLD E WS Q
Sbjct: 708 LEMVIAVDPRMASMSPSVQLDKEQWSTQ 791
>gb|BF049728.1|BF049728 NXCI_106_D04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_106_D04 5' similar to Arabidopsis
thaliana sequence At4g24780 pectate lyase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 456
Score = 230 bits (497), Expect = 1e-059
Identities = 89/143 (62%), Positives = 107/143 (74%)
Frame = +1 / +3
Query: 199 PTHIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDV 378
PTH G RT DGDG+S+F +VW+ S+SNC DGLID + +ST ITISN HFT+H+ V
Sbjct: 3 PTHYGWRTMCDGDGVSIFGGXHVWVXXCSLSNCADGLIDAIMASTAITISNNHFTHHDKV 182
Query: 379 MLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDA 558
ML G +D++ D+ MQ+T+AFNHFG GLVQRMPRCR G+FHV NNDYTHW MYAIGG
Sbjct: 183 MLLGHNDAYAPDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVXNNDYTHWEMYAIGGSAN 362
Query: 559 PTIISQGNRYIAPPNIAAKVITK 627
PTI S+GN Y+AP AK TK
Sbjct: 363 PTINSEGNXYLAPVXXFAKXXTK 431
Score = 157 bits (337), Expect = 2e-037
Identities = 77/142 (54%), Positives = 87/142 (61%)
Frame = -1 / -3
Query: 623 VITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKW 444
V LA GA P L++VG + PP+AY+SQ V*SL T K P RHLG+RCTRP PKW
Sbjct: 427 VXXLAKXSTGARYXFPSLLIVGLALPPIAYISQ*V*SLFXT*KYPWRHLGMRCTRPSPKW 248
Query: 443 LKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQT 264
LKA V CM S SL P+SMT W VK EMVI VE SMRPS+QL+ E QT
Sbjct: 247 LKAIVTCMFLSGA*ASLCPRSMTLSWWVK*LFEMVIAVEAMIASMRPSAQLESEQXXTQT 68
Query: 263 LVAEKREMPSPSALVREPMCVG 198
K E PSPS +V P CVG
Sbjct: 67 WXPPKIETPSPSHIVLHP*CVG 2
>gb|CV033540.1|CV033540 RTNACL1_35_D11.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_35_D11_A029 3', mRNA sequence
Length = 876
Score = 205 bits (443), Expect(2) = 4e-059
Identities = 83/124 (66%), Positives = 95/124 (76%)
Frame = +1 / +3
Query: 259 TNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVA 438
+N+WIDH S+SNC DGLID V ST ITISN T+H+ VML G SD + QD MQ+TVA
Sbjct: 6 SNIWIDHCSLSNCADGLIDAVLGSTAITISNNFMTHHDKVMLLGHSDEYMQDVNMQVTVA 185
Query: 439 FNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKV 618
FN FG GLVQR+PRCR G+FHVVNNDYTHW MYAIGG PTI SQGNR+ AP N +K
Sbjct: 186 FNRFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFHAPVNPFSKE 365
Query: 619 ITKH 630
+TKH
Sbjct: 366 VTKH 377
Score = 163 bits (350), Expect(2) = 5e-041
Identities = 73/128 (57%), Positives = 88/128 (68%)
Frame = -1 / -3
Query: 641 SSA*CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCT 462
S++ C V +L GA RLPWL++VG + PP+AY+SQCV*SL TTWK P RHLG+RCT
Sbjct: 388 SASSCFVTSLEKGLTGAWNRLPWLLIVGFALPPIAYISQCV*SLFTTWK*PCRHLGMRCT 209
Query: 461 RPLPKWLKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDME 282
P PK LKATV CM+ SC SL P+SMT W V E+VI V+ T SM PS+Q D E
Sbjct: 208 SPSPKRLKATVTCMLTSCIYSSL*PRSMTLSWCVIKLFEIVIAVDPRTASMSPSAQFDKE 29
Query: 281 MWSIQTLV 258
WSIQ L+
Sbjct: 28 QWSIQILL 5
Score = 43.7 bits (89), Expect(2) = 4e-059
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1 / +3
Query: 634 AEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 723
A E VW+ W W + DL +NGA F SG A
Sbjct: 384 ALESVWREWNWRSNGDLMLNGAFFTQSGAA 473
Score = 25.8 bits (50), Expect(2) = 5e-041
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -1 / -3
Query: 722 APPDGLKMAPFMNRSSSVCHTQFFHTPSSA*CLVIT 615
A PD +K APF RS HT SSA +T
Sbjct: 472 AAPD*VKNAPFSIRSPFDLQFHSLHTLSSASSCFVT 365
>gb|DR019720.1|DR019720 STRS1_32_A09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_32_A09_A034 3', mRNA sequence
Length = 741
Score = 212 bits (457), Expect(2) = 4e-059
Identities = 85/141 (60%), Positives = 102/141 (72%)
Frame = +1 / -2
Query: 205 HIGSRTRADGDGISLFSATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVML 384
H G RT ADGDGIS+F +WID + S+C GLID + ST ITISN +FT H+ VML
Sbjct: 716 HYGWRTLADGDGISIFGGRYIWIDRCAFSSCNHGLIDAIMGSTAITISNNYFTQHDMVML 537
Query: 385 FGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPT 564
G SDS+ QD IMQ+T+A+N+FG GLVQRMPRCR G+FHVVNN Y HW MYAIGG PT
Sbjct: 536 LGHSDSYVQDVIMQVTIAYNYFGEGLVQRMPRCRHGYFHVVNNQYVHWEMYAIGGSANPT 357
Query: 565 IISQGNRYIAPPNIAAKVITK 627
I S+GN +IA + K +TK
Sbjct: 356 INSEGNIFIASDDANVKQVTK 294
Score = 118 bits (253), Expect(2) = 2e-026
Identities = 68/141 (48%), Positives = 81/141 (57%)
Frame = -1 / +1
Query: 626 LVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPK 447
LV L AM LP L++VG + PP+AY+SQC L TT K P RHLGI T P PK
Sbjct: 295 LVTCLTLASSDAMNMLPSLLIVGLALPPIAYISQCTYWLFTT*KYPCRHLGILWTSPSPK 474
Query: 446 WLKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQ 267
L A V C+I SC SL P+SMT VK +MV+ V+ S+RP QL+ SIQ
Sbjct: 475 *L*AIVTCIITSCT*LSL*PRSMTMSC*VK*LFDMVMAVDPMIASIRPWLQLEKAQRSIQ 654
Query: 266 TLVAEKREMPSPSALVREPMC 204
K EMPSPSA V +P C
Sbjct: 655 M*RPPKIEMPSPSANVLQP*C 717
Score = 37.3 bits (75), Expect(2) = 4e-059
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1 / -2
Query: 646 VWKNWVWHTEDDLFMNGAIFNPSG 717
VW++W W + D +NGA F PSG
Sbjct: 254 VWQDWNWRSVGDQMLNGAYFVPSG 183
Score = 24.0 bits (46), Expect(2) = 2e-026
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2 / +1
Query: 673 PCATPSSSTRLLPRSA 626
PC TP+SS R+ ++A
Sbjct: 85 PCKTPASSVRVSTKTA 132
>gb|CF670977.1|CF670977 RTCNT1_53_H01.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_53_H01_A029 5', mRNA sequence
Length = 640
Score = 201 bits (433), Expect(2) = 8e-059
Identities = 78/122 (63%), Positives = 94/122 (77%)
Frame = +1 / +2
Query: 262 NVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAF 441
++W+DH S+S+C DGLID + ST ITISN T+H+ VML G +D + D MQ+TVAF
Sbjct: 2 HIWVDHCSLSSCTDGLIDAIMGSTAITISNNFMTHHDKVMLLGHNDDYTPDVNMQVTVAF 181
Query: 442 NHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVI 621
NHFG GLVQRMPRCR G+FHVVNNDYTHW MYAIGG PTI SQGNR++AP N +K +
Sbjct: 182 NHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPVNRFSKEV 361
Query: 622 TK 627
TK
Sbjct: 362 TK 367
Score = 149 bits (319), Expect(2) = 5e-036
Identities = 70/119 (58%), Positives = 78/119 (65%)
Frame = -1 / -2
Query: 623 VITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKW 444
V +L GA RLPWL++VG + PPMAY+SQCV*SL TTWK P RHLGI CT P PKW
Sbjct: 363 VTSLEKRLTGARNRLPWLLIVGFALPPMAYISQCV*SLFTTWK*PCRHLGILCTSPSPKW 184
Query: 443 LKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSIQ 267
LKATV CM+ S SL P+SMT W V EMVI V+ SM PS QLD E S Q
Sbjct: 183 LKATVTCMLTSGV*SSLWPRSMTLSWCVIKLFEMVIAVDPIMASMSPSVQLDKEQ*STQ 7
Score = 47.3 bits (97), Expect(2) = 8e-059
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1 / +2
Query: 613 KVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSG 717
+V + Y + +W++W W ++ DL +NGA F PSG
Sbjct: 356 EVTKREYTPKSIWRHWNWRSKGDLMLNGAFFVPSG 460
Score = 23.1 bits (44), Expect(2) = 5e-036
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1 / -2
Query: 716 PDGLKMAPFMNRSSSVCHTQFFH 648
PDG K APF RS Q H
Sbjct: 459 PDGTKNAPFNIRSPFDLQFQCLH 391
>gb|CO199504.1|CO199504 GEO2_1_E01.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_1_E01_A032 5', mRNA sequence
Length = 821
Score = 195 bits (420), Expect(2) = 2e-057
Identities = 76/114 (66%), Positives = 90/114 (78%)
Frame = +1 / -1
Query: 286 MSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLV 465
+SNC DGLID + ST ITISN +FT+HN+VML G SDS+ D M++T+A+NHFG GL+
Sbjct: 821 LSNCADGLIDAIMGSTAITISNSYFTHHNEVMLMGHSDSYTPDVNMRVTIAYNHFGEGLI 642
Query: 466 QRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVITK 627
QRMPRCR G+FHVVNNDYTHW MYAIGG PTI SQGNR+ AP N AK +TK
Sbjct: 641 QRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFSAPANPFAKEVTK 480
Score = 119 bits (254), Expect(2) = 3e-030
Identities = 61/112 (54%), Positives = 72/112 (64%)
Frame = -1 / +1
Query: 623 VITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPKW 444
V + A F GA P L++VG + PP+AY+SQ V*SL TTWK P HLGIRC RP PKW
Sbjct: 484 VTSFAKGFAGAENLFP*LLIVGFALPPIAYISQ*V*SLFTTWKYPCLHLGIRCIRPSPKW 663
Query: 443 LKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLD 288
L A V + S SL P ++TSLW VK EMVI V+ SMRPS+QLD
Sbjct: 664 LYAIVTRIFTSGV*LSL*PINITSLW*VK*LFEMVIAVDPMMASMRPSAQLD 819
Score = 48.7 bits (100), Expect(2) = 2e-057
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1 / -1
Query: 607 AAKVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSG 717
A +V + Y + WKNW W ++ DL +NGA F PSG
Sbjct: 497 AKEVTKRVYGDVEEWKNWNWRSKGDLMLNGAYFTPSG 387
Score = 33.6 bits (67), Expect(2) = 3e-030
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1 / +1
Query: 716 PDGLKMAPFMNRSSSVCHTQFFHTPSS 636
PDG+K APF RS QFFH+ +S
Sbjct: 388 PDGVKYAPFSIRSPFDLQFQFFHSSTS 468
>gb|AL750621.1|AL750621 AL750621 RN Pinus pinaster cDNA clone RN05E06 similar to PECTATE
LYASE, mRNA sequence
Length = 674
Score = 190 bits (409), Expect(2) = 6e-056
Identities = 77/114 (67%), Positives = 89/114 (78%)
Frame = +1 / +3
Query: 286 MSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLV 465
MSNCEDGLID V++ST ITISN +FT HN VML G SD D++MQ TVA NHFG+GLV
Sbjct: 3 MSNCEDGLIDAVKASTFITISNNYFTRHNKVMLLGHSDDHHHDKVMQATVALNHFGKGLV 182
Query: 466 QRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVITK 627
QRMPRCR+G+FHV NN YT W MYAIGG PTI+SQGNR++A N AK +TK
Sbjct: 183 QRMPRCRFGYFHVFNNHYTEWGMYAIGGSSNPTILSQGNRFMASANPFAKEVTK 344
Score = 138 bits (297), Expect(2) = 5e-039
Identities = 68/114 (59%), Positives = 76/114 (66%)
Frame = -1 / -2
Query: 626 LVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLPK 447
LV +LA F A+ LP L +VG PPMAY+ V* LL TWK P RHLGIR TRPLPK
Sbjct: 343 LVTSLAKGFADAINLLP*LRIVGFELPPMAYIPHSV**LLNTWKYPNRHLGIR*TRPLPK 164
Query: 446 WLKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDM 285
WL ATV C+ S SL P S+T LW VK LEMVI V+ T SMRPSSQLD+
Sbjct: 163 WLSATVACITLS*WWSSL*PNSITLLWRVK*LLEMVIKVDALTASMRPSSQLDI 2
Score = 48.7 bits (100), Expect(2) = 6e-056
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1 / +3
Query: 607 AAKVITKHYAEEGVWKNWVWHTEDDLFMNGAIFNPSG 717
A +V + E WK W W +EDD+ +NGA F PSG
Sbjct: 327 AKEVTKRQNTAESEWKKWNWTSEDDVLLNGAYFTPSG 437
Score = 43.2 bits (88), Expect(2) = 5e-039
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = -1 / -2
Query: 716 PDGLKMAPFMNRSSSVCHTQFFHTPSSA*CLVITLAA 606
PDG+K APF + SSS FFH+ S+ CL++T A
Sbjct: 436 PDGVKYAPFSSTSSSDVQFHFFHSLSAVFCLLVTSLA 326
>gb|BM367381.1|BM367381 NXLV_048_E03_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_048_E03 5' similar to Arabidopsis thaliana
sequence At4g24780 pectate lyase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 507
Score = 204 bits (439), Expect(2) = 8e-056
Identities = 79/124 (63%), Positives = 95/124 (76%)
Frame = +1 / +3
Query: 259 TNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVA 438
+N+W+DH S+SNC +GLID + ST ITISN T+H+ VML G SD + QD MQ+TVA
Sbjct: 24 SNIWVDHCSLSNCANGLIDAILGSTAITISNNFMTHHDKVMLLGHSDEYVQDVNMQVTVA 203
Query: 439 FNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKV 618
FNHFG GLVQR+PRCR G+FHVVNNDYTHW MYAIGG PTI SQGNR++ P N +K
Sbjct: 204 FNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLXPVNRFSKE 383
Query: 619 ITKH 630
+T H
Sbjct: 384 VTXH 395
Score = 154 bits (331), Expect = 1e-036
Identities = 68/124 (54%), Positives = 81/124 (65%)
Frame = -1 / -3
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
C V +L G RLPWL++VG + PP+AY+SQCV*SL TTWK P RHLG+RCT P P
Sbjct: 394 CXVTSLEKRLTGXRNRLPWLLIVGLALPPIAYISQCV*SLFTTWK*PCRHLGMRCTSPSP 215
Query: 449 KWLKATVICMIWSCGQESLAPKSMTSLWLVKWQLEMVIPVELCTTSMRPSSQLDMEMWSI 270
KWLKATV CM+ SC SL P+SMT W V E+VI V+ SM P +Q D E S
Sbjct: 214 KWLKATVTCMLTSCTYSSLWPRSMTLSWCVIKLFEIVIAVDPRIASMSPFAQFDKEQ*ST 35
Query: 269 QTLV 258
Q L+
Sbjct: 34 QILL 23
Score = 34.5 bits (69), Expect(2) = 8e-056
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1 / +3
Query: 634 AEEGVWKNWVWHTEDDLFMNGAIFNPSG 717
A E W+ W W + L +NG F SG
Sbjct: 402 APEXXWRQWNWRSXGXLMLNGXFFTQSG 485
>gb|BQ198210.1|BQ198210 NXLV128_A12_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV128_A12 5' similar to Arabidopsis thaliana
sequence At5g63180 pectate lyase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 507
Score = 173 bits (372), Expect(3) = 8e-056
Identities = 69/109 (63%), Positives = 81/109 (74%)
Frame = +1 / +3
Query: 304 GLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRC 483
GLID ++ ST ITISN + + H+ VML G SD + QD MQ T+AFNHFG GLVQRMP C
Sbjct: 168 GLIDAIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQATIAFNHFGEGLVQRMPXC 347
Query: 484 RWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIAPPNIAAKVITKH 630
R G+FHVVNNDYTHW MYAIGG PTI SQ NR++AP N + +TKH
Sbjct: 348 RHGYFHVVNNDYTHWEMYAIGGSANPTINSQXNRFLAPXNAFSXXVTKH 494
Score = 106 bits (226), Expect(2) = 1e-029
Identities = 48/85 (56%), Positives = 57/85 (67%)
Frame = -1 / -3
Query: 629 CLVITLAAMFGGAM*RLPWLMMVGASPPPMAYMSQCV*SLLTTWKKPQRHLGIRCTRPLP 450
CLV GA RL WL++VG + PP+AY+SQ V*SL TTWK P R LG+RCT P P
Sbjct: 493 CLVTXXENALXGARNRLXWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRXLGMRCTSPSP 314
Query: 449 KWLKATVICMIWSCGQESLAPKSMT 375
KWLKA V CM+ S SL P+S+T
Sbjct: 313 KWLKAIVACMLTS*V*SSLWPRSIT 239
Score = 55.6 bits (115), Expect(3) = 8e-056
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +1 / +1
Query: 211 GSRTRADGDGISLFSATNVWIDHISMSNCEDG 306
G T DGDG+S+F A N+W+DH S+S+C +G
Sbjct: 76 GXXTXXDGDGVSIFGANNIWVDHCSLSSCTEG 171
Score = 44.6 bits (91), Expect(2) = 1e-029
Identities = 19/33 (57%), Positives = 20/33 (60%)
Frame = -1 / -2
Query: 305 PSSQLDMEMWSIQTLVAEKREMPSPSALVREPM 207
PS QLD E WS Q L A K E PSPS V P+
Sbjct: 170 PSVQLDKEQWSTQILFAPKMETPSPSXXVXXPV 72
Score = 28.1 bits (55), Expect(3) = 8e-056
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1 / +3
Query: 154 VHDVKHTMGGLMRDSPTHIG 213
+HD K ++RDSPTH G
Sbjct: 18 LHDCKPGGNAMVRDSPTHYG 77
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 582,642,540
Number of Sequences: 355925
Number of extensions: 9419316
Number of successful extensions: 61725
Number of sequences better than 1.0e-020: 161
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 18050299640
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)