TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115184.2.3
(1548 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR050772.1|DR050772 RTBOR1_25_C10.g1_A029 Roots plus add... 151 6e-051
gb|DR072028.1|DR072028 RTDK1_23_D06.g1_A029 Roots, dark Pin... 141 3e-042
gb|CO196845.1|CO196845 GEO1_2_A06.b1_A029 Root gravitropism... 140 7e-041
gb|DR014638.1|DR014638 HEAT1_50_E08.g1_A029 Root at 37 C fo... 126 2e-039
gb|CO370082.1|CO370082 RTK1_65_H06.b1_A029 Roots minus pota... 147 3e-038
gb|BX253476.1|BX253476 BX253476 Pinus pinaster differenciat... 146 3e-038
gb|DR068962.1|DR068962 RTDK1_3_H10.g1_A029 Roots, dark Pinu... 122 3e-038
gb|BX252155.1|BX252155 BX252155 Pinus pinaster differenciat... 117 5e-037
gb|DR022672.1|DR022672 STRS1_52_E06.g1_A034 Shoot tip pitch... 154 2e-036
gb|DR096226.1|DR096226 STRR1_26_D02.g1_A033 Stem Response R... 135 3e-036
gb|CF665534.1|CF665534 RTCNT1_16_D01.g1_A029 Root control P... 133 3e-034
gb|BI397545.1|BI397545 NXPV_100_F08_F NXPV (Nsf Xylem Plani... 135 8e-034
gb|BX250521.1|BX250521 BX250521 Pinus pinaster differenciat... 130 2e-033
gb|CO172772.1|CO172772 NDL1_31_G01.g1_A029 Needles control ... 142 6e-033
gb|CO197457.1|CO197457 GEO1_6_C03.g1_A029 Root gravitropism... 125 7e-033
gb|BQ695682.1|BQ695682 NXPV_031_D11_F NXPV (Nsf Xylem Plani... 135 1e-032
gb|DR057194.1|DR057194 RTNIT1_4_E07.b1_A029 Roots minus nit... 128 2e-032
gb|DR682452.1|DR682452 EST1072527 Normalized pine embryo li... 138 1e-031
gb|BQ695692.1|BQ695692 NXPV_031_E12_F NXPV (Nsf Xylem Plani... 135 1e-031
gb|DR057265.1|DR057265 RTNIT1_4_E07.g1_A029 Roots minus nit... 125 4e-031
gb|BI202850.1|BI202850 NXPV_091_D07_F NXPV (Nsf Xylem Plani... 136 5e-031
gb|BG673824.1|BG673824 NXPV_075_E12_F NXPV (Nsf Xylem Plani... 135 7e-031
gb|DR097874.1|DR097874 STRR1_37_D04.g1_A033 Stem Response R... 130 2e-029
gb|BQ695778.1|BQ695778 NXPV_032_E11_F NXPV (Nsf Xylem Plani... 129 4e-029
gb|DR050690.1|DR050690 RTBOR1_25_C10.b1_A029 Roots plus add... 91 4e-029
gb|DR692937.1|DR692937 EST1083025 Normalized pine embryo li... 61 6e-029
gb|DR099658.1|DR099658 STRR1_57_E02.b1_A033 Stem Response R... 128 8e-029
gb|DR099702.1|DR099702 STRR1_57_E02.g1_A033 Stem Response R... 128 1e-028
gb|DR092421.1|DR092421 STRR1_1_G02.b1_A033 Stem Response Re... 122 7e-027
gb|BI076998.1|BI076998 NXPV_085_G09_F NXPV (Nsf Xylem Plani... 116 3e-025
gb|CO168808.1|CO168808 NDL1_2_D11.g1_A029 Needles control P... 106 3e-023
gb|CO370165.1|CO370165 RTK1_65_H06.g1_A029 Roots minus pota... 65 3e-021
gb|CO170268.1|CO170268 NDL1_12_G07.g1_A029 Needles control ... 81 3e-021
>gb|DR050772.1|DR050772 RTBOR1_25_C10.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_C10_A029 5', mRNA sequence
Length = 883
Score = 151 bits (325), Expect(4) = 6e-051
Identities = 63/139 (45%), Positives = 90/139 (64%)
Frame = -3 / +2
Query: 1027 CKILPNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHI 848
C +P +LV+ +NV +R +T +S H+ I + V ++ + + APGDSPNTDGIH+
Sbjct: 194 CLSVPTALVVYSSSNVHLRDLTFQDSPKIHVEIAQSTYVQVENLQIVAPGDSPNTDGIHV 373
Query: 847 GDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQ 668
S +V I + TI GDDC+SI GS I+I+ + CGPGHGIS+GSLG E V DV
Sbjct: 374 YASQHVVIQNCTIATGDDCVSIVTGSSDIQINKLVCGPGHGISIGSLGSGNSEDTVSDVI 553
Query: 667 VTGCTIAGTTNGLRIKSYE 611
V G ++ T NG+RIK+++
Sbjct: 554 VNGASLTATQNGVRIKTWQ 610
Score = 41.4 bits (84), Expect(4) = 6e-051
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = -3 / +2
Query: 487 ASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDI 356
+S V V++V + +I GTS T EAI L C+ ++PC + + + +
Sbjct: 752 SSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISL 883
Score = 33.1 bits (66), Expect(4) = 6e-051
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3 / +2
Query: 589 ASKFLYEGITMDNVSYPIIIDQKYC 515
A +++ + M NV+ PIIIDQ YC
Sbjct: 626 AQGIIFQHVRMTNVANPIIIDQYYC 700
Score = 32.7 bits (65), Expect(4) = 6e-051
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3 / +2
Query: 1144 QRNWIEIENVENLSINGHGTIDGQGALVWS 1055
++ W+ V+ L+I+G G IDG G W+
Sbjct: 74 RQEWLMFSKVQGLTISGGGIIDGTGRKWWA 163
>gb|DR072028.1|DR072028 RTDK1_23_D06.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_23_D06_A029 5', mRNA sequence
Length = 671
Score = 141 bits (303), Expect(3) = 3e-042
Identities = 62/142 (43%), Positives = 87/142 (61%)
Frame = -3 / +3
Query: 1036 SYNCKILPNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDG 857
++ C +P + V+ +NV +R + +S H+ I +V ++ + + APGDSPNTDG
Sbjct: 150 NHMCLNIPTAFVVYSSSNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDG 329
Query: 856 IHIGDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVE 677
IHI S +V I + TI GDDCISI S I I + CGPGHGIS+GSLG V
Sbjct: 330 IHIYASQHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVS 509
Query: 676 DVQVTGCTIAGTTNGLRIKSYE 611
DV V G ++ GT NG+RIK+++
Sbjct: 510 DVFVNGASLNGTQNGVRIKTWQ 575
Score = 35.9 bits (72), Expect(3) = 3e-042
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3 / +3
Query: 589 ASKFLYEGITMDNVSYPIIIDQKYC 515
A + +++ + M NVS PIIIDQ YC
Sbjct: 591 AQRIMFQHVNMINVSNPIIIDQYYC 665
Score = 34.1 bits (68), Expect(3) = 3e-042
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3 / +3
Query: 1144 QRNWIEIENVENLSINGHGTIDGQGALVW 1058
+ W+ V+ L+ING G IDG G W
Sbjct: 39 RNEWLMFSKVQGLTINGGGIIDGTGQKWW 125
>gb|CO196845.1|CO196845 GEO1_2_A06.b1_A029 Root gravitropism April 2003 test Pinus taeda cDNA
clone GEO1_2_A06_A029 3', mRNA sequence
Length = 691
Score = 140 bits (300), Expect(3) = 7e-041
Identities = 61/142 (42%), Positives = 87/142 (61%)
Frame = -3 / -2
Query: 1036 SYNCKILPNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDG 857
++ C +P + V+ +NV +R + +S H+ I +V ++ + + APGDSPNTDG
Sbjct: 600 NHMCLNIPTAFVVYSSSNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDG 421
Query: 856 IHIGDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVE 677
IHI S +V I + TI GDDCISI S I I + CGPGHGIS+GSLG V
Sbjct: 420 IHIYASQHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVS 241
Query: 676 DVQVTGCTIAGTTNGLRIKSYE 611
DV V G ++ GT NG+RI++++
Sbjct: 240 DVFVNGASLNGTQNGVRIRTWQ 175
Score = 38.2 bits (77), Expect(3) = 7e-041
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -3 / -2
Query: 589 ASKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTS 434
A + +++ + M NVS PIIIDQ YC K K ND +H +
Sbjct: 159 AQRIMFQHVNMINVSNPIIIDQYYCAGPSPCKKQQMKPCNNDSSAVLVHNVT 4
Score = 28.6 bits (56), Expect(3) = 7e-041
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3 / -2
Query: 1117 VENLSINGHGTIDGQGALVW 1058
V+ L+ING G IDG G W
Sbjct: 684 VQGLTINGGGIIDGTGQKWW 625
>gb|DR014638.1|DR014638 HEAT1_50_E08.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_E08_A029 5', mRNA sequence
Length = 881
Score = 126 bits (270), Expect(3) = 2e-039
Identities = 51/94 (54%), Positives = 66/94 (70%)
Frame = -3 / -2
Query: 892 VKAPGDSPNTDGIHIGDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVG 713
+ APGDSPNTDGIH+ S +V I + TI GDDC+SI GS I+I+ + CGPGHGIS+G
Sbjct: 874 IVAPGDSPNTDGIHVYASQHVVIQNCTIATGDDCVSIVTGSSDIQINKLVCGPGHGISIG 695
Query: 712 SLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYE 611
SLG E V DV V G ++ T NG+RIK+++
Sbjct: 694 SLGSGNSEDTVSDVIVNGASLTATQNGVRIKTWQ 593
Score = 42.8 bits (87), Expect(3) = 2e-039
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = -3 / -2
Query: 487 ASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKT 329
+S V V++V + +I GTS T EAI L C+ ++PC + + + ++ + T
Sbjct: 451 SSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISLRLDNGDPAT 293
Score = 33.1 bits (66), Expect(3) = 2e-039
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3 / -2
Query: 589 ASKFLYEGITMDNVSYPIIIDQKYC 515
A +++ + M NV+ PIIIDQ YC
Sbjct: 577 AQGIIFQHVRMTNVANPIIIDQYYC 503
>gb|CO370082.1|CO370082 RTK1_65_H06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_65_H06_A029 3', mRNA sequence
Length = 723
Score = 147 bits (315), Expect(2) = 3e-038
Identities = 62/139 (44%), Positives = 90/139 (64%)
Frame = -3 / -2
Query: 1027 CKILPNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHI 848
C +P +LV+ +NV +R +T +S H+ I + V ++ + + APGDSPNTDGIH+
Sbjct: 563 CLSVPTALVVYSSSNVHLRDLTFQDSPKIHVEIAQSTYVEVENLQIVAPGDSPNTDGIHV 384
Query: 847 GDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQ 668
S +V I + TI GDDC+SI GS I+I+ + CGPGHGIS+GSLG E V +V
Sbjct: 383 YASQHVVIQNCTIATGDDCVSIVTGSSDIQINKLVCGPGHGISIGSLGSGDLEDTVSEVI 204
Query: 667 VTGCTIAGTTNGLRIKSYE 611
V G ++ T NG+RIK+++
Sbjct: 203 VNGASLTATQNGVRIKTWQ 147
Score = 33.1 bits (66), Expect(2) = 3e-038
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3 / -2
Query: 589 ASKFLYEGITMDNVSYPIIIDQKYC 515
A +++ + M NV+ PIIIDQ YC
Sbjct: 131 AQGIIFQHVRMTNVANPIIIDQYYC 57
>gb|BX253476.1|BX253476 BX253476 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP083H12 similar to POLYGALACTURONASE
PRECURSOR, mRNA sequence
Length = 596
Score = 146 bits (313), Expect(2) = 3e-038
Identities = 63/142 (44%), Positives = 89/142 (62%)
Frame = -3 / +1
Query: 1036 SYNCKILPNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDG 857
++ C +P + ++ +NV +R + +S H+ I +V ++ + + APGDSPNTDG
Sbjct: 112 NHMCLSVPTAFMVYSSSNVHLRDLKFRDSPKIHVEIAMSTHVQVENLEIVAPGDSPNTDG 291
Query: 856 IHIGDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVE 677
IHI S +V I + TI GDDCISI S I I + CGPGHGIS+GSLG+ E V
Sbjct: 292 IHIYASQHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGKADSEDTVS 471
Query: 676 DVQVTGCTIAGTTNGLRIKSYE 611
DV V G ++ GT NGLRIK+++
Sbjct: 472 DVFVNGASLNGTQNGLRIKTWQ 537
Score = 34.1 bits (68), Expect(2) = 3e-038
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3 / +1
Query: 1144 QRNWIEIENVENLSINGHGTIDGQGALVW 1058
+ W+ V+ L+ING G IDG G W
Sbjct: 1 RNEWLMFSKVQGLTINGGGIIDGTGQKWW 87
>gb|DR068962.1|DR068962 RTDK1_3_H10.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_3_H10_A029 5', mRNA sequence
Length = 794
Score = 122 bits (261), Expect(3) = 3e-038
Identities = 50/98 (51%), Positives = 67/98 (68%)
Frame = -3 / +1
Query: 904 DKVTVKAPGDSPNTDGIHIGDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHG 725
+ + + A GDSPNTDGIH+ S +V I + TI GDDC+SI GS I+I+ + CGPGHG
Sbjct: 1 ENLQIVALGDSPNTDGIHVYASQHVVIQNCTIATGDDCVSIVTGSSGIQINKLVCGPGHG 180
Query: 724 ISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYE 611
IS+GSLG E V DV V G ++ T NG+RIK+++
Sbjct: 181 ISIGSLGSGDSEDTVSDVIVNGASLTATQNGVRIKTWQ 294
Score = 42.8 bits (87), Expect(3) = 3e-038
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = -3 / +1
Query: 487 ASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKT 329
+S V V++V + +I GTS T EAI L C+ ++PC + + + ++ + T
Sbjct: 436 SSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKILMEGISLRLDNGDPAT 594
Score = 33.1 bits (66), Expect(3) = 3e-038
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3 / +1
Query: 589 ASKFLYEGITMDNVSYPIIIDQKYC 515
A +++ + M NV+ PIIIDQ YC
Sbjct: 310 AQGIIFQHVRMTNVANPIIIDQYYC 384
>gb|BX252155.1|BX252155 BX252155 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP060E10, mRNA sequence
Length = 693
Score = 117 bits (251), Expect(3) = 5e-037
Identities = 51/107 (47%), Positives = 65/107 (60%)
Frame = -3 / +3
Query: 1027 CKILPNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHI 848
C+ P + +D NV I+ + NS+ H+ I V + + V APGDSPNTDGIHI
Sbjct: 372 CRSAPTAFTVDLSWNVIIKDLNFQNSQQIHIVISRSIGVQVTDLLVVAPGDSPNTDGIHI 551
Query: 847 GDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSL 707
S +V I+ I GDDCISI GS +++ V CGPGHGISVGSL
Sbjct: 552 TRSQDVVINGCKIATGDDCISIVSGSANVKVGDVLCGPGHGISVGSL 692
Score = 43.7 bits (89), Expect(3) = 5e-037
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -3 / +3
Query: 1369 LDIAQLGAKGDGKSDSTPMILKAWKNACEATGVQKIVIPPGNYLTGGLELKGPCKS 1202
+++ GA+GDG +D T + AW+ AC + +V YL + GPC S
Sbjct: 9 VNVESFGAQGDGITDDTQAFMNAWQMACSLSNSVFLVPEGYVYLVKPITFTGPCNS 176
Score = 32.7 bits (65), Expect(3) = 5e-037
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3 / +3
Query: 1141 RNWIEIENVENLSINGHGTIDGQGALVWSKN 1049
R W+ + ++I G G IDG G W+++
Sbjct: 255 RTWLVFSRLNGVTIQGEGVIDGSGQKWWAQS 347
>gb|DR022672.1|DR022672 STRS1_52_E06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_52_E06_A034 5', mRNA sequence
Length = 566
Score = 154 bits (330), Expect = 2e-036
Identities = 64/150 (42%), Positives = 89/150 (59%)
Frame = -3 / +2
Query: 1027 CKILPNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHI 848
C+ P ++ + N+++ +T+ NS+ H+ + C V+ D + V APG SPNTDGIH+
Sbjct: 89 CRSAPTAITFELCNNLRMMNLTVENSQQMHIKLRRCVGVVADHLKVLAPGHSPNTDGIHV 268
Query: 847 GDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQ 668
S +V I +T IG GDDCISI S I + CGPGHGIS+GSLG + V DV
Sbjct: 269 SASKDVVIKNTIIGTGDDCISIVSDSFNICTENIACGPGHGISIGSLGEGSAKAQVADVM 448
Query: 667 VTGCTIAGTTNGLRIKSYEDSKSSLKASKF 578
V G + TTNGLRIK+++ S + F
Sbjct: 449 VHGAFLENTTNGLRIKTWQGSSGFARRITF 538
>gb|DR096226.1|DR096226 STRR1_26_D02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_26_D02_A033 5', mRNA sequence
Length = 802
Score = 135 bits (290), Expect(2) = 3e-036
Identities = 59/126 (46%), Positives = 79/126 (62%)
Frame = -3 / +3
Query: 988 TNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTI 809
+NV +R + +S H+ I +V ++ + + APGDSPNTDGIHI S +V I + TI
Sbjct: 15 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 194
Query: 808 GVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGL 629
GDDCISI S I I + CGPGHGIS+GSLG V DV V G ++ GT NG+
Sbjct: 195 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGV 374
Query: 628 RIKSYE 611
RIK+++
Sbjct: 375 RIKTWQ 392
Score = 41.4 bits (84), Expect(2) = 3e-036
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = -3 / +3
Query: 487 ASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDI 356
+S V V++V + +I GTS T EAI L C+ ++PC + + + +
Sbjct: 534 SSAVLVHNVTYTDITGTSATKEAIKLACSGSVPCTEIVMEGISL 665
>gb|CF665534.1|CF665534 RTCNT1_16_D01.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_D01_A029 5', mRNA sequence
Length = 441
Score = 133 bits (285), Expect(2) = 3e-034
Identities = 54/110 (49%), Positives = 74/110 (67%)
Frame = -3 / +3
Query: 940 HLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTIGVGDDCISIGPGSKMI 761
H+ I + V ++ + + APGDSPNTDGIH+ S +V I + TI GDDC+SI GS I
Sbjct: 3 HVEIAQSTYVQVENLQIVAPGDSPNTDGIHVYASQHVVIQNCTIATGDDCVSIVTGSSGI 182
Query: 760 RIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYE 611
+I+ + CGPGHGIS+GSLG E V DV V G ++ T NG+RIK+++
Sbjct: 183 QINKLVCGPGHGISIGSLGSGDSEDTVSDVIVNGASLTATQNGVRIKTWQ 332
Score = 33.1 bits (66), Expect(2) = 3e-034
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3 / +3
Query: 589 ASKFLYEGITMDNVSYPIIIDQKYC 515
A +++ + M NV+ PIIIDQ YC
Sbjct: 348 AQGIIFQHVRMTNVANPIIIDQYYC 422
>gb|BI397545.1|BI397545 NXPV_100_F08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_100_F08 5' similar to Arabidopsis
thaliana sequence At1g80170 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 135 bits (290), Expect(2) = 8e-034
Identities = 59/126 (46%), Positives = 79/126 (62%)
Frame = -3 / +2
Query: 988 TNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTI 809
+NV +R + +S H+ I +V ++ + + APGDSPNTDGIHI S +V I + TI
Sbjct: 2 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 181
Query: 808 GVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGL 629
GDDCISI S I I + CGPGHGIS+GSLG V DV V G ++ GT NG+
Sbjct: 182 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGV 361
Query: 628 RIKSYE 611
RIK+++
Sbjct: 362 RIKTWQ 379
Score = 29.5 bits (58), Expect(2) = 8e-034
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3 / +2
Query: 589 ASKFLYEGITMDNVSYPIIIDQ 524
A + +++ + M NVS PIIIDQ
Sbjct: 395 AQRIMFQHVNMINVSNPIIIDQ 460
>gb|BX250521.1|BX250521 BX250521 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP038A08 similar to POLYGALACTURONASE
PRECURSOR, mRNA sequence
Length = 662
Score = 130 bits (278), Expect(2) = 2e-033
Identities = 57/132 (43%), Positives = 80/132 (60%)
Frame = -3 / +2
Query: 1036 SYNCKILPNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDG 857
++ C +P + ++ +NV +R + +S H+ I +V ++ + + APGDSPNTDG
Sbjct: 266 NHMCLSVPTAFMVYSSSNVHLRDLKFRDSPKIHVEIAMSTHVQVENLEIVAPGDSPNTDG 445
Query: 856 IHIGDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVE 677
IHI S +V I + TI GDDCISI S I I + CGPGHGIS+GSLG+ E V
Sbjct: 446 IHIYASQHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGQADSEDTVS 625
Query: 676 DVQVTGCTIAGT 641
DV V G ++ GT
Sbjct: 626 DVFVNGASLNGT 661
Score = 34.1 bits (68), Expect(2) = 2e-033
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3 / +2
Query: 1144 QRNWIEIENVENLSINGHGTIDGQGALVW 1058
+ W+ V+ L+ING G IDG G W
Sbjct: 155 RNEWLMFSKVQGLTINGGGIIDGTGQKWW 241
>gb|CO172772.1|CO172772 NDL1_31_G01.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_31_G01_A029 5', mRNA sequence
Length = 695
Score = 142 bits (305), Expect = 6e-033
Identities = 62/161 (38%), Positives = 95/161 (59%)
Frame = -3 / +1
Query: 1087 TIDGQGALVWSKNQCQHSYNCKILPNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVL 908
TI G G + S+ C +P +LV++ +NV ++ +T + H+ I E V
Sbjct: 184 TIGGGGIIDGRDCNRNRSHICPSVPTALVVNSSSNVHLKNLTFHVNPKIHVEINESTYVE 363
Query: 907 IDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGH 728
++ + + APGDSPNTDGIH+ DS +V I + I GD C+SIG S I+I+ + C PG
Sbjct: 364 VENLKIVAPGDSPNTDGIHVYDSQHVVIQNCKIATGDYCVSIGTESSSIQINKLVCEPGQ 543
Query: 727 GISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDS 605
GIS+GSLG E V DV V G ++ + NG+R+++++ S
Sbjct: 544 GISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVETWQSS 666
>gb|CO197457.1|CO197457 GEO1_6_C03.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_6_C03_A029 5', mRNA sequence
Length = 580
Score = 125 bits (267), Expect(2) = 7e-033
Identities = 53/102 (51%), Positives = 68/102 (66%)
Frame = -3 / +3
Query: 916 NVLIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCG 737
+V ++ + + APGDSPNTDGIHI S +V I + TI GDDCISI S I I + CG
Sbjct: 24 HVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDIEISKLVCG 203
Query: 736 PGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYE 611
PGHGIS+GSLG V DV V G ++ GT NG+RIK+++
Sbjct: 204 PGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTWQ 329
Score = 40.0 bits (81), Expect(2) = 7e-033
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = -3 / +3
Query: 487 ASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPC 386
+S V V++V + +I GTS T EAI L C+ ++PC
Sbjct: 471 SSAVLVHNVTYTDITGTSATKEAIKLACSGSVPC 572
>gb|BQ695682.1|BQ695682 NXPV_031_D11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_031_D11 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 523
Score = 135 bits (290), Expect(2) = 1e-032
Identities = 59/126 (46%), Positives = 79/126 (62%)
Frame = -3 / +2
Query: 988 TNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTI 809
+NV +R + +S H+ I +V ++ + + APGDSPNTDGIHI S +V I + TI
Sbjct: 2 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 181
Query: 808 GVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGL 629
GDDCISI S I I + CGPGHGIS+GSLG V DV V G ++ GT NG+
Sbjct: 182 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGV 361
Query: 628 RIKSYE 611
RIK+++
Sbjct: 362 RIKTWQ 379
Score = 25.8 bits (50), Expect(2) = 1e-032
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3 / +2
Query: 589 ASKFLYEGITMDNVSYPIIIDQKYC 515
A + +++ + M NVS III YC
Sbjct: 395 AQRIMFQHVNMINVSXXIIIXXIYC 469
>gb|DR057194.1|DR057194 RTNIT1_4_E07.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_4_E07_A029 3', mRNA sequence
Length = 504
Score = 128 bits (275), Expect(2) = 2e-032
Identities = 55/110 (50%), Positives = 71/110 (64%)
Frame = -3 / -2
Query: 940 HLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTIGVGDDCISIGPGSKMI 761
H+ I +V ++ + + APGDSPNTDGIHI S +V I + TI GDDCISI S I
Sbjct: 497 HIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDI 318
Query: 760 RIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYE 611
I + CGPGHGIS+GSLG V DV V G ++ GT NG+RIK+++
Sbjct: 317 EISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTWQ 168
Score = 31.8 bits (63), Expect(2) = 2e-032
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3 / -2
Query: 589 ASKFLYEGITMDNVSYPIIIDQKYCPNN 506
A + +++ + M VS PIIIDQ +C N
Sbjct: 152 AQRIMFQHVNMIKVSNPIIIDQYFCTWN 69
>gb|DR682452.1|DR682452 EST1072527 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA992, mRNA sequence
Length = 841
Score = 138 bits (296), Expect = 1e-031
Identities = 60/160 (37%), Positives = 94/160 (58%)
Frame = -3 / -2
Query: 1084 IDGQGALVWSKNQCQHSYNCKILPNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLI 905
I G G + ++ C +P +LV++ +NV ++ +T + H+ I + V +
Sbjct: 840 ISGGGIIDGRDCNRTRNHICPSVPTALVVNSSSNVHLKNLTFHVNPKIHVEINQSTYVEV 661
Query: 904 DKVTVKAPGDSPNTDGIHIGDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHG 725
+ + + APGDSPNTDGI + DS +V I + TI GDDC+SIG S I+I+ + C PG G
Sbjct: 660 ENLKIVAPGDSPNTDGIRVYDSQHVVIQNCTIATGDDCVSIGTESSTIQINKLVCEPGQG 481
Query: 724 ISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDS 605
IS+GSLG E V DV V G ++ + NG+R+++ + S
Sbjct: 480 ISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVQTGQSS 361
>gb|BQ695692.1|BQ695692 NXPV_031_E12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_031_E12 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 522
Score = 135 bits (290), Expect(2) = 1e-031
Identities = 59/126 (46%), Positives = 79/126 (62%)
Frame = -3 / +2
Query: 988 TNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTI 809
+NV +R + +S H+ I +V ++ + + APGDSPNTDGIHI S +V I + TI
Sbjct: 2 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 181
Query: 808 GVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGL 629
GDDCISI S I I + CGPGHGIS+GSLG V DV V G ++ GT NG+
Sbjct: 182 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGV 361
Query: 628 RIKSYE 611
RIK+++
Sbjct: 362 RIKTWQ 379
Score = 22.1 bits (42), Expect(2) = 1e-031
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -3 / +2
Query: 589 ASKFLYEGITMDNVSYPIIIDQKYC 515
A + + + + M S PIII YC
Sbjct: 395 AQRIMXQHVNMIXXSNPIIIXXIYC 469
>gb|DR057265.1|DR057265 RTNIT1_4_E07.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_4_E07_A029 5', mRNA sequence
Length = 650
Score = 125 bits (267), Expect(2) = 4e-031
Identities = 55/108 (50%), Positives = 69/108 (63%)
Frame = -3 / +2
Query: 937 LNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTIGVGDDCISIGPGSKMIR 758
L I +V ++ + + APGDSPNTDGIHI S +V I + TI GDDCISI S I
Sbjct: 326 LKIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDIE 505
Query: 757 IHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSY 614
I + CGPGHGIS+GSLG V DV V G ++ GT NG+RIK++
Sbjct: 506 ISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTW 649
Score = 34.1 bits (68), Expect(2) = 4e-031
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3 / +1
Query: 1144 QRNWIEIENVENLSINGHGTIDGQGALVW 1058
+ W+ V+ L+ING G IDG G W
Sbjct: 115 RNEWLMFSKVQGLTINGGGIIDGTGQKWW 201
>gb|BI202850.1|BI202850 NXPV_091_D07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_091_D07 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 537
Score = 136 bits (291), Expect = 5e-031
Identities = 56/141 (39%), Positives = 88/141 (62%)
Frame = -3 / +3
Query: 1027 CKILPNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHI 848
C +P +LV++ +NV+++ +T + H+ I + V ++ + + APGDSPNTDGI +
Sbjct: 54 CPSVPTALVVNSSSNVRLKNLTFHVNPKIHVEINQSTYVEVENLKIVAPGDSPNTDGIRV 233
Query: 847 GDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQ 668
DS +V I + TI GDDC+SIG S I+I+ + C PG GIS+GSLG E V DV
Sbjct: 234 YDSQHVVIQNCTIATGDDCVSIGTESSTIQINKLVCEPGQGISIGSLGSGNSEDTVSDVI 413
Query: 667 VTGCTIAGTTNGLRIKSYEDS 605
G ++ + NG+R+++ + S
Sbjct: 414 XXGASLTASQNGVRVQTGQSS 476
>gb|BG673824.1|BG673824 NXPV_075_E12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_075_E12 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 471
Score = 135 bits (290), Expect = 7e-031
Identities = 59/126 (46%), Positives = 79/126 (62%)
Frame = -3 / +2
Query: 988 TNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTI 809
+NV +R + +S H+ I +V ++ + + APGDSPNTDGIHI S +V I + TI
Sbjct: 2 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 181
Query: 808 GVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGL 629
GDDCISI S I I + CGPGHGIS+GSLG V DV V G ++ GT NG+
Sbjct: 182 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGV 361
Query: 628 RIKSYE 611
RIK+++
Sbjct: 362 RIKTWQ 379
>gb|DR097874.1|DR097874 STRR1_37_D04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_37_D04_A033 5', mRNA sequence
Length = 695
Score = 130 bits (279), Expect = 2e-029
Identities = 56/137 (40%), Positives = 82/137 (59%)
Frame = -3 / +3
Query: 1015 PNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSS 836
PN F NV ++ +T + H+ I + V ++ + + APGDSPNTDGI + DS
Sbjct: 21 PNRTCGKF*LNVHLKNLTFHVNPKIHVEINQSTYVEVENLKIVAPGDSPNTDGIRVYDSQ 200
Query: 835 NVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGC 656
+V I + TI GDDC+SIG S I+I+ + C PG GIS+GSLG E V DV V G
Sbjct: 201 HVVIQNCTIATGDDCVSIGTESSTIQINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGA 380
Query: 655 TIAGTTNGLRIKSYEDS 605
++ + NG+R+++ + S
Sbjct: 381 SLTASQNGVRVQTGQSS 431
>gb|BQ695778.1|BQ695778 NXPV_032_E11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_032_E11 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 423
Score = 129 bits (277), Expect = 4e-029
Identities = 58/124 (46%), Positives = 74/124 (59%)
Frame = -3 / +2
Query: 988 TNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTI 809
+NV +R + +S H+ I +V ++ + + APGDSPNTDGIHI S +V I + TI
Sbjct: 2 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 181
Query: 808 GVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGL 629
GDDCISI S I I + CGPGHGIS+GSLG V DV V G GT N +
Sbjct: 182 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSXXSNDTVSDVFVNGAXXNGTQNXV 361
Query: 628 RIKS 617
RIK+
Sbjct: 362 RIKT 373
>gb|DR050690.1|DR050690 RTBOR1_25_C10.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_C10_A029 3', mRNA sequence
Length = 835
Score = 91.3 bits (193), Expect(3) = 4e-029
Identities = 37/72 (51%), Positives = 49/72 (68%)
Frame = -3 / +2
Query: 826 ISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIA 647
I + TI GDDC+SI GS I+I+ + CGPGHGIS+GSLG E V DV V G ++
Sbjct: 5 IQNCTIATGDDCVSIVTGSSDIQINKLVCGPGHGISIGSLGSGNSEDTVSDVIVNGASLT 184
Query: 646 GTTNGLRIKSYE 611
T NG+RIK+++
Sbjct: 185 ATQNGVRIKTWQ 220
Score = 42.8 bits (87), Expect(3) = 4e-029
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = -3 / +2
Query: 487 ASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKT 329
+S V V++V + +I GTS T EAI L C+ ++PC + + + ++ + T
Sbjct: 362 SSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISLRLDNGDPAT 520
Score = 33.1 bits (66), Expect(3) = 4e-029
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3 / +2
Query: 589 ASKFLYEGITMDNVSYPIIIDQKYC 515
A +++ + M NV+ PIIIDQ YC
Sbjct: 236 AQGIIFQHVRMTNVANPIIIDQYYC 310
>gb|DR692937.1|DR692937 EST1083025 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADS13 3' end, mRNA sequence
Length = 757
Score = 60.6 bits (126), Expect(4) = 6e-029
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = -3 / +1
Query: 1366 DIAQLGAKGDGKSDSTPMILKAWKNACEATGVQKIVIPPGNYLTGGLELKGPCKSSIII 1190
++ Q GAK DG +D+ L AW AC +T + IP GN+L G + +GPC + I+
Sbjct: 223 NVQQYGAKADGITDNRKAFLAAWVAACSSTHTSVVYIPEGNFLLGPVSFEGPCNNDNIM 399
Score = 56.1 bits (116), Expect(4) = 6e-029
Identities = 21/34 (61%), Positives = 28/34 (82%)
Frame = -3 / +3
Query: 943 FHLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGD 842
F +I CKNV +++T++APGDSPNTDGIH+GD
Sbjct: 654 FPHSIRSCKNVNAEELTMEAPGDSPNTDGIHMGD 755
Score = 35.4 bits (71), Expect(4) = 6e-029
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3 / +1
Query: 1135 WIEIENVENLSINGHGTIDGQGALVWS 1055
W+ V++L++ G G +DGQGA W+
Sbjct: 469 WLNFNYVDHLTVEGMGRLDGQGASWWN 549
Score = 31.8 bits (63), Expect(4) = 6e-029
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3 / +1
Query: 1033 YNCKILPNSLVLDFVTNVQIRGITLLNSKFFHL 935
Y C P +L+ N +R IT +NSK FH+
Sbjct: 565 YVCHGGPTTLLFSNANNTVVRQITSINSKHFHI 663
>gb|DR099658.1|DR099658 STRR1_57_E02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_57_E02_A033 3', mRNA sequence
Length = 768
Score = 128 bits (275), Expect = 8e-029
Identities = 53/121 (43%), Positives = 77/121 (63%)
Frame = -3 / +2
Query: 967 ITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTIGVGDDCI 788
+T S H+ I + V ++ + + APGDSPNTDGIH+ DS +V I + TI GDDC+
Sbjct: 5 LTFHVSPKIHVEINQSTYVEVENLKIVAPGDSPNTDGIHVYDSQHVVIQNCTIATGDDCV 184
Query: 787 SIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYED 608
SIG S I+I+ + C PG GIS+GSLG E V DV V G ++ + NG+R+++++
Sbjct: 185 SIGTESSSIQINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVETWQS 364
Query: 607 S 605
S
Sbjct: 365 S 367
>gb|DR099702.1|DR099702 STRR1_57_E02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_57_E02_A033 5', mRNA sequence
Length = 546
Score = 128 bits (274), Expect = 1e-028
Identities = 51/112 (45%), Positives = 74/112 (66%)
Frame = -3 / +2
Query: 940 HLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTIGVGDDCISIGPGSKMI 761
H+ I + V ++ + + APGDSPNTDGIH+ DS +V I + TI GDDC+SIG S I
Sbjct: 5 HVEINQSTYVEVENLKIVAPGDSPNTDGIHVYDSQHVVIQNCTIATGDDCVSIGTESSSI 184
Query: 760 RIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDS 605
+I+ + C PG GIS+GSLG E V DV V G ++ + NG+R+++++ S
Sbjct: 185 QINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVETWQSS 340
>gb|DR092421.1|DR092421 STRR1_1_G02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_G02_A033 3', mRNA sequence
Length = 860
Score = 122 bits (261), Expect = 7e-027
Identities = 50/112 (44%), Positives = 72/112 (64%)
Frame = -3 / +2
Query: 940 HLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTIGVGDDCISIGPGSKMI 761
H+ I + V ++ + + APGDSPNTDGI + DS +V I + TI GDDC+SIG S I
Sbjct: 56 HVEINQSTYVEVENLKIVAPGDSPNTDGIRVYDSQHVVIQNCTIATGDDCVSIGTESSTI 235
Query: 760 RIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDS 605
+I+ + C PG GIS+GSLG E V DV V G ++ + NG+R+++ + S
Sbjct: 236 QINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVQTGQSS 391
>gb|BI076998.1|BI076998 NXPV_085_G09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_085_G09 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 373
Score = 116 bits (249), Expect = 3e-025
Identities = 54/124 (43%), Positives = 71/124 (57%)
Frame = -3 / +2
Query: 988 TNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTI 809
+NV +R + +S H+ I +V ++ + + APGDSPNTDGIHI S +V I + TI
Sbjct: 2 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 181
Query: 808 GVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGL 629
GDDCISI S I I + CGPGHGIS LG V V V G ++ T N +
Sbjct: 182 ATGDDCISIVTQSSDIEISKLVCGPGHGISXXXLGSGDSNDTVXXVFVXGASLNXTQNXV 361
Query: 628 RIKS 617
RIK+
Sbjct: 362 RIKT 373
>gb|CO168808.1|CO168808 NDL1_2_D11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_2_D11_A029 5', mRNA sequence
Length = 728
Score = 106 bits (227), Expect(2) = 3e-023
Identities = 43/89 (48%), Positives = 59/89 (66%)
Frame = -3 / +3
Query: 871 PNTDGIHIGDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKD 692
PNTDGIH+ DS +V I + TI GDDC+SIG S I+I+ + C PG GIS+GSLG
Sbjct: 291 PNTDGIHVYDSQHVVIQNCTIATGDDCVSIGTESSTIQINKLVCEPGQGISIGSLGSGNS 470
Query: 691 EKDVEDVQVTGCTIAGTTNGLRIKSYEDS 605
E V DV V G ++ + NG+R+++ + S
Sbjct: 471 EDTVSDVIVNGASLTASQNGVRVETGQSS 557
Score = 26.3 bits (51), Expect(2) = 3e-023
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3 / +2
Query: 1141 RNWIEIENVENLSINGHGTIDGQ 1073
+ W+ V+ L+I+G G IDG+
Sbjct: 176 QEWLMFSKVQVLNISGGGIIDGR 244
>gb|CO370165.1|CO370165 RTK1_65_H06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_65_H06_A029 5', mRNA sequence
Length = 728
Score = 64.8 bits (135), Expect(3) = 3e-021
Identities = 27/55 (49%), Positives = 38/55 (69%)
Frame = -3 / -1
Query: 775 GSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYE 611
GS I+I+ + CGPGHGIS+GSLG E V +V V G ++ T NG+RIK+++
Sbjct: 725 GSSDIQINKLVCGPGHGISMGSLGSGDLEDTVSEVIVNGASLTATQNGVRIKTWQ 561
Score = 42.8 bits (87), Expect(3) = 3e-021
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = -3 / -1
Query: 487 ASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVNVDIKYNGSGNKT 329
+S V V++V + +I GTS T EAI L C+ ++PC + + + ++ + T
Sbjct: 419 SSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISLRLDNGDPAT 261
Score = 33.1 bits (66), Expect(3) = 3e-021
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3 / -1
Query: 589 ASKFLYEGITMDNVSYPIIIDQKYC 515
A +++ + M NV+ PIIIDQ YC
Sbjct: 545 AQGIIFQHVRMTNVANPIIIDQYYC 471
>gb|CO170268.1|CO170268 NDL1_12_G07.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_12_G07_A029 5', mRNA sequence
Length = 555
Score = 80.8 bits (170), Expect(2) = 3e-021
Identities = 33/74 (44%), Positives = 48/74 (64%)
Frame = -3 / -1
Query: 826 ISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIA 647
I + TI GD+C+SIG S I+I+ V C PG GIS+GSLG E V DV V G +++
Sbjct: 423 IQNCTIATGDECVSIGTESSTIQINKVVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLS 244
Query: 646 GTTNGLRIKSYEDS 605
+ NG+R+++ + S
Sbjct: 243 ASQNGVRVQTGQSS 202
Score = 42.3 bits (86), Expect(2) = 3e-021
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -3 / -2
Query: 940 HLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDS 839
H+ I + V ++ + + APGDSPNTDGI + DS
Sbjct: 539 HVEINQSTYVEVENLKIVAPGDSPNTDGIRVYDS 438
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 557,663,183
Number of Sequences: 355925
Number of extensions: 6867623
Number of successful extensions: 49417
Number of sequences better than 1.0e-020: 40
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 24527871495
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)