TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115097.2.2
(1086 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR015281.1|DR015281 STRS1_2_C05.g1_A034 Shoot tip pitch ... 276 3e-089
gb|DR093057.1|DR093057 STRR1_5_F06.g1_A033 Stem Response Re... 277 2e-088
gb|DR096273.1|DR096273 STRR1_26_H05.g1_A033 Stem Response R... 277 2e-087
gb|CX649475.1|CX649475 COLD1_35_B04.g1_A029 Root cold Pinus... 270 3e-087
gb|DR070152.1|DR070152 RTDK1_11_D01.g1_A029 Roots, dark Pin... 264 1e-085
gb|DT636492.1|DT636492 EST1151423 Normalized pine embryo li... 263 3e-085
gb|DR055148.1|DR055148 RTCA1_21_G09.g2_A029 Roots minus cal... 277 4e-085
gb|CF666895.1|CF666895 RTCNT1_26_G11.g1_A029 Root control P... 268 4e-084
gb|AF085330.1|AF085330 Pinus taeda expansin mRNA, complete cds 163 2e-083
gb|U64891.1|PTU64891 Pinus taeda expansin mRNA, partial cds 163 2e-083
gb|CF402042.1|CF402042 RTWW1_16_F09.g1_A015 Well-watered lo... 271 4e-083
gb|CF386766.1|CF386766 RTDR1_16_C08.g1_A015 Loblolly pine r... 266 7e-083
gb|CF400637.1|CF400637 RTWW1_6_B06.g1_A015 Well-watered lob... 266 7e-083
gb|U64890.1|PTU64890 Pinus taeda expansin mRNA, partial cds 162 8e-083
gb|U64893.1|PTU64893 Pinus taeda expansin mRNA, partial cds 163 8e-083
gb|DR120696.1|DR120696 RTMG1_31_G12.b1_A029 Roots minus mag... 254 5e-082
gb|DR051531.1|DR051531 RTBOR1_30_E09.g1_A029 Roots plus add... 277 6e-082
gb|CX648930.1|CX648930 COLD1_31_H02.g1_A029 Root cold Pinus... 252 2e-081
gb|DR692635.1|DR692635 EST1082723 Normalized pine embryo li... 168 2e-081
gb|DT625757.1|DT625757 EST1157681 Sequencing ESTs from lobl... 168 2e-081
gb|CN784348.1|CN784348 EST783039 Sequencing ESTs from loblo... 168 2e-081
gb|CF391855.1|CF391855 RTDR3_10_C05.g1_A022 Loblolly pine r... 168 2e-081
gb|DR099166.1|DR099166 STRR1_53_C12.g1_A033 Stem Response R... 249 4e-081
gb|U64892.1|PTU64892 Pinus taeda expansin mRNA, partial cds 156 6e-081
gb|CX649938.1|CX649938 COLD1_42_B01.g1_A029 Root cold Pinus... 160 2e-080
gb|DR011619.1|DR011619 HEAT1_6_G09.g1_A029 Root at 37 C for... 277 5e-080
gb|DR024833.1|DR024833 STRS1_67_F03.g1_A034 Shoot tip pitch... 277 5e-080
gb|CF668487.1|CF668487 RTCNT1_36_F12.g1_A029 Root control P... 277 5e-080
gb|DR010861.1|DR010861 HEAT1_1_F12.g1_A029 Root at 37 C for... 160 1e-079
gb|CO197872.1|CO197872 GEO1_9_E12.g1_A029 Root gravitropism... 160 2e-079
gb|CO171305.1|CO171305 NDL1_20_C09.g1_A029 Needles control ... 198 3e-079
gb|CF386013.1|CF386013 RTDR1_7_F11.g1_A015 Loblolly pine ro... 274 5e-079
gb|CO367487.1|CO367487 RTK1_34_D03.g1_A029 Roots minus pota... 252 9e-079
gb|DR095411.1|DR095411 STRR1_20_G09.g1_A033 Stem Response R... 164 1e-078
gb|DR021085.1|DR021085 STRS1_42_F09.b1_A034 Shoot tip pitch... 164 1e-078
gb|CF668294.1|CF668294 RTCNT1_35_D04.g1_A029 Root control P... 164 1e-078
gb|DR050310.1|DR050310 RTBOR1_22_D04.g1_A029 Roots plus add... 252 1e-078
gb|CX652556.1|CX652556 COLD1_59_H02.g1_A029 Root cold Pinus... 240 2e-078
gb|CF471926.1|CF471926 RTDS1_7_A08.g1_A015 Drought-stressed... 163 2e-078
gb|DT624714.1|DT624714 EST1159049 Sequencing ESTs from lobl... 160 3e-078
gb|DR181356.1|DR181356 RTMNUT1_38_A01.g2_A029 Roots minus m... 160 3e-078
gb|DR080162.1|DR080162 RTFEPL1_20_E11.g1_A029 Roots plus ad... 277 6e-078
gb|DT633920.1|DT633920 EST1148851 Normalized pine embryo li... 185 6e-078
gb|CO169500.1|CO169500 NDL1_7_B04.g1_A029 Needles control P... 159 9e-078
gb|DT624311.1|DT624311 EST1158586 Sequencing ESTs from lobl... 162 1e-077
gb|DR685073.1|DR685073 EST1075150 Normalized pine embryo li... 162 1e-077
gb|DT632413.1|DT632413 EST1147344 Normalized pine embryo li... 152 1e-077
gb|DR688987.1|DR688987 EST1079073 Normalized pine embryo li... 168 2e-077
gb|DR180723.1|DR180723 RTMNUT1_34_A06.g1_A029 Roots minus m... 112 4e-077
gb|DR098553.1|DR098553 STRR1_46_F12.b1_A033 Stem Response R... 200 1e-076
gb|CF391890.1|CF391890 RTDR3_10_G01.g1_A022 Loblolly pine r... 277 4e-076
gb|DR093671.1|DR093671 STRR1_9_E07.g1_A033 Stem Response Re... 248 7e-076
gb|CV144435.1|CV144435 EST855644 Sequencing ESTs from loblo... 160 2e-075
gb|DR070312.1|DR070312 RTDK1_12_C03.g1_A029 Roots, dark Pin... 160 5e-075
gb|DR120128.1|DR120128 RTMG1_27_E05.g2_A029 Roots minus mag... 273 5e-075
gb|DR090373.1|DR090373 RTAL1_14_D02.g1_A029 Roots plus adde... 205 9e-075
gb|DR019211.1|DR019211 STRS1_28_B06.g1_A034 Shoot tip pitch... 138 5e-074
gb|DR051834.1|DR051834 RTBOR1_32_E10.g1_A029 Roots plus add... 252 6e-074
gb|DR089298.1|DR089298 RTAL1_7_G03.g1_A029 Roots plus added... 276 1e-073
gb|CX650703.1|CX650703 COLD1_47_B12.g1_A029 Root cold Pinus... 165 1e-073
gb|DT632636.1|DT632636 EST1147567 Normalized pine embryo li... 162 3e-073
gb|CO362158.1|CO362158 RTK1_1_E05.g1_A029 Roots minus potas... 223 4e-073
gb|CF479851.1|CF479851 RTWW3_12_D07.g1_A022 Well-watered lo... 275 5e-073
gb|DR097316.1|DR097316 STRR1_33_H05.g3_A033 Stem Response R... 156 1e-072
gb|CO368748.1|CO368748 RTK1_42_C07.g1_A029 Roots minus pota... 163 1e-072
gb|CO367410.1|CO367410 RTK1_34_D03.b1_A029 Roots minus pota... 222 1e-072
gb|DR022663.1|DR022663 STRS1_52_D06.g1_A034 Shoot tip pitch... 269 3e-071
gb|DR120161.1|DR120161 RTMG1_27_H07.g2_A029 Roots minus mag... 160 1e-070
gb|CF477384.1|CF477384 RTWW3_7_A01.g1_A022 Well-watered lob... 252 4e-070
gb|DR168497.1|DR168497 RTPHOS1_25_G11.g1_A029 Roots minus p... 252 2e-069
gb|BX253271.1|BX253271 BX253271 Pinus pinaster differenciat... 262 4e-069
gb|CO369598.1|CO369598 RTK1_48_F01.b1_A029 Roots minus pota... 213 5e-069
gb|DR096352.1|DR096352 STRR1_27_A07.g1_A033 Stem Response R... 261 7e-069
gb|DR092307.1|DR092307 RTAL1_28_G05.b1_A029 Roots plus adde... 252 1e-068
gb|BX254474.1|BX254474 BX254474 Pinus pinaster differenciat... 207 2e-068
gb|BX251144.1|BX251144 BX251144 Pinus pinaster differenciat... 259 3e-068
gb|BX251613.1|BX251613 BX251613 Pinus pinaster differenciat... 258 5e-068
gb|BX682844.1|BX682844 BX682844 Pinus pinaster differenciat... 258 5e-068
gb|DR692432.1|DR692432 EST1082520 Normalized pine embryo li... 155 8e-068
gb|DR687528.1|DR687528 EST1077610 Normalized pine embryo li... 168 2e-067
gb|CF476071.1|CF476071 RTWW2_16_D03.g1_A021 Well-watered lo... 160 3e-067
gb|DR100480.1|DR100480 STRR1_64_A12.g1_A033 Stem Response R... 255 4e-067
gb|DR745029.1|DR745029 RTCU1_26_C03.g1_A029 Roots plus adde... 198 8e-067
gb|DR072178.1|DR072178 RTDK1_24_C09.g1_A029 Roots, dark Pin... 200 2e-066
gb|CO200976.1|CO200976 RTCNT2_2_G03.g1_A029 Root control 2 ... 200 2e-066
gb|DR096360.1|DR096360 STRR1_27_B05.g1_A033 Stem Response R... 164 5e-066
gb|DR683982.1|DR683982 EST1074058 Normalized pine embryo li... 155 6e-066
gb|DT631935.1|DT631935 EST1146866 Normalized pine embryo li... 155 6e-066
gb|CO362167.1|CO362167 RTK1_1_F05.g1_A029 Roots minus potas... 219 7e-066
gb|CF663902.1|CF663902 RTCNT1_5_H12.g1_A029 Root control Pi... 165 1e-065
gb|DR168662.1|DR168662 RTPHOS1_27_B09.b1_A029 Roots minus p... 200 9e-065
gb|AW011524.1|AW011524 ST21H02 Pine TriplEx shoot tip libra... 235 4e-063
gb|DR746394.1|DR746394 RTCU1_36_E04.g1_A029 Roots plus adde... 242 4e-063
gb|BM427751.1|BM427751 NXRV_002_G05_F NXRV (Nsf Xylem Root ... 155 1e-062
gb|DR056610.1|DR056610 RTCA1_31_A02.g1_A029 Roots minus cal... 234 1e-062
gb|CF479898.1|CF479898 RTWW3_12_H04.g1_A022 Well-watered lo... 160 2e-062
gb|DR055601.1|DR055601 RTCA1_24_E10.g2_A029 Roots minus cal... 155 8e-062
gb|BF609490.1|BF609490 NXSI_043_C03_F NXSI (Nsf Xylem Side ... 156 9e-062
gb|DR165660.1|DR165660 RTPHOS1_6_B10.g1_A029 Roots minus ph... 185 2e-061
gb|CR393417.1|CR393417 CR393417 RN Pinus pinaster cDNA clon... 214 5e-061
gb|DR163422.1|DR163422 RTFE1_42_G07.g1_A029 Roots minus iro... 181 1e-060
gb|CV035603.1|CV035603 RTNACL1_41_D10.b1_A029 Roots plus ad... 181 4e-059
gb|CX646780.1|CX646780 COLD1_11_B06.g1_A029 Root cold Pinus... 176 5e-059
gb|DR056635.1|DR056635 RTCA1_31_C07.g1_A029 Roots minus cal... 155 5e-059
gb|CO166169.1|CO166169 FLD1_59_G05.g1_A029 Root flooded Pin... 100 8e-059
gb|CX713463.1|CX713463 RTPQ1_9_C04.g1_A032 Roots treated wi... 172 5e-058
gb|DR023285.1|DR023285 STRS1_56_D02.g1_A034 Shoot tip pitch... 172 6e-058
gb|CF477424.1|CF477424 RTWW3_7_B01.g1_A022 Well-watered lob... 223 2e-057
gb|BX250040.1|BX250040 BX250040 Pinus pinaster differenciat... 136 3e-057
gb|DR053875.1|DR053875 RTCA1_13_G12.g1_A029 Roots minus cal... 222 4e-057
gb|DR113034.1|DR113034 RTS1_32_B12.g1_A029 Roots minus sulf... 166 2e-056
gb|BF778581.1|BF778581 NXSI_088_D02_F NXSI (Nsf Xylem Side ... 215 3e-055
gb|BX251561.1|BX251561 BX251561 Pinus pinaster differenciat... 214 8e-055
gb|BF518096.1|BF518096 NXSI_030_H10_F NXSI (Nsf Xylem Side ... 123 2e-053
gb|BG275593.1|BG275593 NXSI_143_F09_F NXSI (Nsf Xylem Side ... 156 2e-053
gb|CV138360.1|CV138360 EST849569 Sequencing ESTs from loblo... 133 4e-053
gb|DR100599.1|DR100599 STRR1_65_E02.g1_A033 Stem Response R... 198 1e-052
gb|CF400025.1|CF400025 RTWW1_2_C11.g1_A015 Well-watered lob... 95 2e-052
gb|DR119331.1|DR119331 RTMG1_22_C11.g1_A029 Roots minus mag... 151 4e-052
gb|BE762031.1|BE762031 NXCI_076_B10_F NXCI (Nsf Xylem Compr... 204 9e-052
gb|DR055444.1|DR055444 RTCA1_23_E11.g2_A029 Roots minus cal... 129 3e-051
gb|AA556861.1|AA556861 703 Loblolly pine C Pinus taeda cDNA... 165 3e-051
gb|CX648594.1|CX648594 COLD1_29_D11.g1_A029 Root cold Pinus... 128 1e-050
gb|DR742067.1|DR742067 RTCU1_1_B09.g1_A029 Roots plus added... 128 1e-050
gb|CF668454.1|CF668454 RTCNT1_36_C09.g1_A029 Root control P... 147 2e-050
gb|DR111040.1|DR111040 RTS1_14_G09.g1_A029 Roots minus sulf... 147 2e-050
gb|DR119250.1|DR119250 RTMG1_22_C11.b1_A029 Roots minus mag... 140 1e-048
gb|DR011201.1|DR011201 HEAT1_4_E06.b1_A029 Root at 37 C for... 140 1e-048
gb|DR070179.1|DR070179 RTDK1_11_F07.g1_A029 Roots, dark Pin... 194 1e-048
gb|CX650764.1|CX650764 COLD1_48_A05.b1_A029 Root cold Pinus... 146 2e-048
gb|BF609532.1|BF609532 NXSI_043_G01_F NXSI (Nsf Xylem Side ... 191 7e-048
gb|AA556812.1|AA556812 654 Loblolly pine C Pinus taeda cDNA... 137 2e-047
gb|AW290718.1|AW290718 NXNV046B02F Nsf Xylem Normal wood Ve... 147 2e-047
gb|CD027376.1|CD027376 NXNV046B02 Nsf Xylem Normal wood Ver... 147 2e-047
gb|CR393207.1|CR393207 CR393207 RN Pinus pinaster cDNA clon... 189 2e-047
gb|AW290022.1|AW290022 NXNV009F01F Nsf Xylem Normal wood Ve... 187 2e-046
gb|CD026679.1|CD026679 NXNV009F01 Nsf Xylem Normal wood Ver... 187 2e-046
gb|BQ198383.1|BQ198383 NXLV130_C02_F NXLV (Nsf Xylem Late w... 156 6e-046
gb|CV035673.1|CV035673 RTNACL1_41_D10.g1_A029 Roots plus ad... 181 7e-045
gb|BE049743.1|BE049743 NXNV_143_C08_F Nsf Xylem Normal wood... 136 1e-044
gb|DR163235.1|DR163235 RTFE1_41_E12.g1_A029 Roots minus iro... 128 2e-044
gb|DR163745.1|DR163745 RTFE1_44_D12.g1_A029 Roots minus iro... 128 2e-044
gb|DR163481.1|DR163481 RTFE1_43_D12.b1_A029 Roots minus iro... 128 2e-044
gb|CO361349.1|CO361349 NDL2_4_G08.b1_A029 Needles control 2... 128 2e-044
gb|DR163147.1|DR163147 RTFE1_41_E12.b1_A029 Roots minus iro... 128 2e-044
gb|CO172418.1|CO172418 NDL1_29_D02.g1_A029 Needles control ... 128 2e-044
gb|CF475910.1|CF475910 RTWW2_15_D07.g1_A021 Well-watered lo... 128 2e-044
gb|DR102236.1|DR102236 STRR1_79_C04.g1_A033 Stem Response R... 177 9e-044
gb|DR163657.1|DR163657 RTFE1_44_D12.b1_A029 Roots minus iro... 125 2e-043
gb|BM367687.1|BM367687 NXLV_053_B09_F NXLV (Nsf Xylem Late ... 174 8e-043
gb|DR100574.1|DR100574 STRR1_65_E02.b1_A033 Stem Response R... 120 2e-042
gb|CV035793.1|CV035793 RTNACL1_42_B01.g1_A029 Roots plus ad... 115 6e-041
gb|AW290008.1|AW290008 NXNV009E08F Nsf Xylem Normal wood Ve... 97 8e-041
gb|CD026675.1|CD026675 NXNV009E08 Nsf Xylem Normal wood Ver... 97 8e-041
gb|BF517063.1|BF517063 NXSI_008_G03_F NXSI (Nsf Xylem Side ... 106 2e-040
gb|DR071242.1|DR071242 RTDK1_18_C12.g1_A029 Roots, dark Pin... 91 6e-040
gb|CF400653.1|CF400653 RTWW1_6_A01.g1_A015 Well-watered lob... 128 3e-039
gb|CF386668.1|CF386668 RTDR1_16_C08.b1_A015 Loblolly pine r... 114 5e-039
gb|CO361435.1|CO361435 NDL2_4_G08.g1_A029 Needles control 2... 128 7e-039
gb|BG039378.1|BG039378 NXSI_098_D11_F NXSI (Nsf Xylem Side ... 113 9e-039
gb|DR071475.1|DR071475 RTDK1_20_C09.b1_A029 Roots, dark Pin... 107 6e-038
gb|DT639052.1|DT639052 EST1153983 Normalized pine embryo li... 128 1e-037
gb|DR100138.1|DR100138 STRR1_62_B05.b1_A033 Stem Response R... 104 2e-037
gb|CF471900.1|CF471900 RTDS1_7_A08.b1_A015 Drought-stressed... 105 2e-037
gb|CF668214.1|CF668214 RTCNT1_35_D04.b1_A029 Root control P... 104 2e-037
gb|BF609081.1|BF609081 NXSI_040_B10_F NXSI (Nsf Xylem Side ... 103 4e-037
gb|DR015200.1|DR015200 STRS1_2_C05.b1_A034 Shoot tip pitch ... 100 2e-036
gb|DR102735.1|DR102735 STRR1_83_A06.g1_A033 Stem Response R... 100 2e-036
gb|DR010784.1|DR010784 HEAT1_1_F12.b1_A029 Root at 37 C for... 97 7e-036
gb|CO168791.1|CO168791 NDL1_2_C05.g1_A029 Needles control P... 150 1e-035
gb|CF474408.1|CF474408 RTWW2_20_A09.g1_A021 Well-watered lo... 96 3e-035
gb|AA556399.1|AA556399 254 Loblolly pine C Pinus taeda cDNA... 147 3e-035
gb|BQ654413.1|BQ654413 NXRV080_A02_F NXRV (Nsf Xylem Root w... 106 5e-035
gb|AW985386.1|AW985386 NXNV_134_G08_F Nsf Xylem Normal wood... 146 2e-034
gb|DR050231.1|DR050231 RTBOR1_22_D04.b1_A029 Roots plus add... 95 2e-034
gb|DR092975.1|DR092975 STRR1_5_F06.b1_A033 Stem Response Re... 96 3e-034
gb|DR098461.1|DR098461 STRR1_45_E01.g1_A033 Stem Response R... 92 6e-034
gb|BF186094.1|BF186094 NXCI_132_F04_F NXCI (Nsf Xylem Compr... 92 6e-034
gb|DR090533.1|DR090533 RTAL1_15_E12.g1_A029 Roots plus adde... 144 8e-034
gb|DT637181.1|DT637181 EST1152112 Normalized pine embryo li... 126 1e-033
gb|CX650634.1|CX650634 COLD1_47_B12.b1_A029 Root cold Pinus... 95 5e-033
gb|DR055518.1|DR055518 RTCA1_24_E10.b1_A029 Roots minus cal... 90 7e-033
gb|BM902805.1|BM902805 NXLV_075_E10_F NXLV (Nsf Xylem Late ... 141 1e-032
gb|CF396870.1|CF396870 RTDS2_24_A10.g1_A021 Drought-stresse... 84 1e-031
gb|CO169428.1|CO169428 NDL1_7_B04.b1_A029 Needles control P... 79 2e-031
gb|CX651774.1|CX651774 COLD1_54_E06.g1_A029 Root cold Pinus... 105 6e-031
gb|BF049828.1|BF049828 NXCI_111_D09_F NXCI (Nsf Xylem Compr... 133 2e-030
gb|BE582419.1|BE582419 NXCI_033_B08_F NXCI (Nsf Xylem Compr... 105 2e-030
gb|DT635613.1|DT635613 EST1150544 Normalized pine embryo li... 46 2e-030
gb|DR090297.1|DR090297 RTAL1_14_D02.b1_A029 Roots plus adde... 79 4e-030
gb|DR112973.1|DR112973 RTS1_32_B12.b1_A029 Roots minus sulf... 79 4e-030
gb|DR090465.1|DR090465 RTAL1_15_E12.b1_A029 Roots plus adde... 79 5e-030
gb|DR071171.1|DR071171 RTDK1_18_C12.b1_A029 Roots, dark Pin... 77 2e-029
gb|AW587662.1|AW587662 ST63B06 Pine TriplEx shoot tip libra... 130 2e-029
gb|DR024751.1|DR024751 STRS1_67_F03.b1_A034 Shoot tip pitch... 77 2e-029
gb|DR694543.1|DR694543 EST1084635 Normalized pine embryo li... 110 2e-029
gb|CO368672.1|CO368672 RTK1_42_C07.b1_A029 Roots minus pota... 79 9e-029
gb|DR015024.1|DR015024 STRS1_1_B12.b1_A034 Shoot tip pitch ... 74 1e-028
gb|DR692513.1|DR692513 EST1082601 Normalized pine embryo li... 126 3e-028
gb|DR047687.1|DR047687 RTBOR1_2_F07.g1_A029 Roots plus adde... 74 4e-028
gb|CF400511.1|CF400511 RTWW1_6_B06.b1_A015 Well-watered lob... 78 2e-027
gb|CF399941.1|CF399941 RTWW1_2_C11.b1_A015 Well-watered lob... 75 3e-027
gb|CX649395.1|CX649395 COLD1_35_B04.b1_A029 Root cold Pinus... 73 4e-027
gb|CX649869.1|CX649869 COLD1_42_B01.b1_A029 Root cold Pinus... 73 5e-027
gb|BG039056.1|BG039056 NXSI_092_B09_F NXSI (Nsf Xylem Side ... 120 2e-026
gb|CO171240.1|CO171240 NDL1_20_C09.b1_A029 Needles control ... 68 3e-026
gb|AW697618.1|AW697618 ST61B04 Pine TriplEx shoot tip libra... 119 3e-026
gb|DR021638.1|DR021638 STRS1_46_B05.b1_A034 Shoot tip pitch... 73 6e-026
gb|BQ107011.1|BQ107011 NXLV085_E06_F NXLV (Nsf Xylem Late w... 73 8e-026
gb|BF517775.1|BF517775 NXSI_031_A12_F NXSI (Nsf Xylem Side ... 117 1e-025
gb|DR689717.1|DR689717 EST1079803 Normalized pine embryo li... 46 1e-025
gb|BF777631.1|BF777631 NXSI_070_G06_F NXSI (Nsf Xylem Side ... 117 1e-025
gb|BF610570.1|BF610570 NXSI_060_B07_F NXSI (Nsf Xylem Side ... 106 4e-025
gb|DR079899.1|DR079899 RTFEPL1_18_B10.g1_A029 Roots plus ad... 115 7e-025
gb|BE761955.1|BE761955 NXCI_075_C03_F NXCI (Nsf Xylem Compr... 114 1e-024
gb|BQ635086.1|BQ635086 NXRV076_G12_F NXRV (Nsf Xylem Root w... 114 1e-024
gb|BM158415.1|BM158415 NXLV_034_B09_F NXLV (Nsf Xylem Late ... 74 1e-024
gb|DR054266.1|DR054266 RTCA1_16_F08.b1_A029 Roots minus cal... 71 3e-024
gb|CF475767.1|CF475767 RTWW2_15_D07.b1_A021 Well-watered lo... 71 3e-024
gb|DR162969.1|DR162969 RTFE1_23_E05.b1_A029 Roots minus iro... 112 3e-024
gb|CO369680.1|CO369680 RTK1_48_F01.g1_A029 Roots minus pota... 69 4e-024
gb|CD020758.1|CD020758 NXNV_085_G07_F Nsf Xylem Normal wood... 111 1e-023
gb|DR092690.1|DR092690 STRR1_3_D06.b1_A033 Stem Response Re... 73 1e-023
gb|BF778542.1|BF778542 NXSI_085_H09_F NXSI (Nsf Xylem Side ... 73 1e-023
gb|DR089220.1|DR089220 RTAL1_7_G03.b1_A029 Roots plus added... 73 4e-023
gb|AW698040.1|AW698040 NXNV_078_B06_F Nsf Xylem Normal wood... 108 6e-023
gb|AW698185.1|AW698185 NXNV_074_D07_F Nsf Xylem Normal wood... 71 6e-023
gb|BF186130.1|BF186130 NXCI_133_A11_F NXCI (Nsf Xylem Compr... 104 1e-021
gb|BF609736.1|BF609736 NXSI_048_G12_F NXSI (Nsf Xylem Side ... 104 1e-021
gb|DR684423.1|DR684423 EST1074500 Normalized pine embryo li... 81 1e-021
gb|AW290421.1|AW290421 NXNV020D02F Nsf Xylem Normal wood Ve... 78 1e-021
gb|CD027081.1|CD027081 NXNV020D02 Nsf Xylem Normal wood Ver... 78 1e-021
gb|DR070227.1|DR070227 RTDK1_12_C03.b1_A029 Roots, dark Pin... 73 2e-021
gb|CF668373.1|CF668373 RTCNT1_36_C09.b1_A029 Root control P... 73 3e-021
gb|CO201071.1|CO201071 RTCNT2_3_A06.g1_A029 Root control 2 ... 71 4e-021
gb|CF385705.1|CF385705 RTDR1_5_F10.g1_A015 Loblolly pine ro... 94 4e-021
>gb|DR015281.1|DR015281 STRS1_2_C05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_2_C05_A034 5', mRNA sequence
Length = 848
Score = 276 bits (598), Expect(2) = 3e-089
Identities = 104/174 (59%), Positives = 130/174 (74%)
Frame = +3 / +2
Query: 159 GKFTAGPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGC 338
G + GP AHATFYGG D SGT GACGY + +QGYGVQ+ A+ST LF G +CG C
Sbjct: 131 GVYFPGPWNEAHATFYGGSDASGTMGGACGYGNLYSQGYGVQSAALSTALFNSGLSCGAC 310
Query: 339 YEVRCVDSPSGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQ 518
+E++CV+ P C P +++VTAT+ CPPN D+GGWCNPPR HFDLSMP FL++A+
Sbjct: 311 FEIKCVNDPEWCHPGNPSILVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPIFLKMAE 490
Query: 519 EKAGIVPISYRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+AGIVP+ +RRV C KQGG+R+TI G KYFN+V ITNV GAGD+ VSVKGS+
Sbjct: 491 YRAGIVPVLFRRVPCVKQGGVRFTINGFKYFNLVLITNVAGAGDLVRVSVKGSQ 652
Score = 170 bits (366), Expect(2) = 8e-044
Identities = 90/180 (50%), Positives = 98/180 (54%)
Frame = -3 / -3
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
LPFT T SPAP T V+ T LKYL P+MV PPCF H TL GT+PA AI R
Sbjct: 648 LPFTLTLTKSPAPATFVMRTRLKYLKPLMVNLTPPCFTHGTLLKRTGTIPARYSAILRKI 469
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAP 317
GM RSK RGGLH PPLS LGG + VAVT G H G T S PQ +P
Sbjct: 468 GMERSKWGRGGLHQPPLSLGRA*LGGQKLVAVTKIEGLPG*HHSGSFTHLISKQAPQLSP 289
Query: 316 SPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWAGFXGPAVNLPWLWCTTR 137
N VL A TPYP YP AP +VP+ S PP*KVA A F GP P + TR
Sbjct: 288 LLNRAVLNAAD*TPYPWLYRLPYPQAPPMVPEASLPP*KVACASFQGPGK*TPGIRPYTR 109
Score = 73.0 bits (153), Expect(2) = 3e-089
Identities = 24/55 (43%), Positives = 36/55 (65%)
Frame = +3 / +2
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
W + RNWGQ WQ L +SL+FR+ SD R +TSW+++P +W+FG T+ +
Sbjct: 659 WIPLSRNWGQNWQCSTVLVGQSLSFRITGSDRRTSTSWNIVPPNWEFGQTFSGKQ 823
Score = 27.6 bits (54), Expect(2) = 8e-044
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2 / -2
Query: 833 AELPVSGENVP*GGLAVVASHHPERQRLAGEVLPGLPHLPPVALHLRP 690
A+LP+ NVP G V + + E + L + LP L PV+ P
Sbjct: 802 AKLPIWRHNVPGCGGPAVTASYSEGEALPDQNGAALPILAPVSGQWNP 659
>gb|DR093057.1|DR093057 STRR1_5_F06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_5_F06_A033 5', mRNA sequence
Length = 884
Score = 277 bits (599), Expect(2) = 2e-088
Identities = 104/174 (59%), Positives = 130/174 (74%)
Frame = +3 / +3
Query: 159 GKFTAGPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGC 338
G + GP AHATFYGG D SGT GACGY + +QGYGVQ+ A+ST LF G +CG C
Sbjct: 114 GVYQPGPWNEAHATFYGGSDASGTMGGACGYGNLYSQGYGVQSAALSTALFNSGLSCGAC 293
Query: 339 YEVRCVDSPSGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQ 518
+E++CV+ P C P +++VTAT+ CPPN D+GGWCNPPR HFDLSMP FL++A+
Sbjct: 294 FEIKCVNDPEWCHPGNPSILVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPIFLKMAE 473
Query: 519 EKAGIVPISYRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+AGIVP+ +RRV C KQGG+R+TI G KYFN+V ITNV GAGD+ VSVKGS+
Sbjct: 474 YRAGIVPVLFRRVPCVKQGGVRFTINGFKYFNLVLITNVAGAGDLVRVSVKGSQ 635
Score = 169 bits (364), Expect(2) = 2e-043
Identities = 87/168 (51%), Positives = 94/168 (55%)
Frame = -3 / -2
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
LPFT T SPAP T V+ T LKYL P+MV PPCF H TL GT+PA AI R
Sbjct: 631 LPFTLTLTKSPAPATFVMRTRLKYLKPLMVNLTPPCFTHGTLLKRTGTIPARYSAILRKI 452
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAP 317
GM RSK RGGLH PPLS LGG + VAVT G H G T S PQ +P
Sbjct: 451 GMERSKWGRGGLHQPPLSLGRA*LGGQKLVAVTKIEGLPG*HHSGSFTHLISKQAPQLSP 272
Query: 316 SPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWAGFXGP 173
N VL A TPYP YP AP +VP+ S PP*KVA A F GP
Sbjct: 271 LLNRAVLNAAD*TPYPWLYRLPYPQAPPMVPEASLPP*KVACASFQGP 128
Score = 70.3 bits (147), Expect(2) = 2e-088
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +3 / +3
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
W + RNWGQ WQ L +SL+FR+ SD R + SW+++P +W+FG T+ +
Sbjct: 642 WIPLSRNWGQNWQCSTVLVGQSLSFRITGSDRRTSISWNIVPPNWEFGQTFSGKQ 806
Score = 27.6 bits (54), Expect(2) = 2e-043
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2 / -1
Query: 833 AELPVSGENVP*GGLAVVASHHPERQRLAGEVLPGLPHLPPVALHLRP 690
A+LP+ NVP G V + + E + L + LP L PV+ P
Sbjct: 785 AKLPIWRHNVPGYGGPAVTASYSEGEALPDQNGAALPILAPVSGQWNP 642
>gb|DR096273.1|DR096273 STRR1_26_H05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_26_H05_A033 5', mRNA sequence
Length = 801
Score = 277 bits (599), Expect(2) = 2e-087
Identities = 104/174 (59%), Positives = 130/174 (74%)
Frame = +3 / +3
Query: 159 GKFTAGPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGC 338
G + GP AHATFYGG D SGT GACGY + +QGYGVQ+ A+ST LF G +CG C
Sbjct: 129 GVYQPGPWNEAHATFYGGSDASGTMGGACGYGNLYSQGYGVQSAALSTALFNSGLSCGAC 308
Query: 339 YEVRCVDSPSGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQ 518
+E++CV+ P C P +++VTAT+ CPPN D+GGWCNPPR HFDLSMP FL++A+
Sbjct: 309 FEIKCVNDPEWCHPGNPSILVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPIFLKMAE 488
Query: 519 EKAGIVPISYRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+AGIVP+ +RRV C KQGG+R+TI G KYFN+V ITNV GAGD+ VSVKGS+
Sbjct: 489 YRAGIVPVLFRRVPCVKQGGVRFTINGFKYFNLVLITNVAGAGDLVRVSVKGSQ 650
Score = 169 bits (364), Expect(2) = 4e-043
Identities = 87/168 (51%), Positives = 94/168 (55%)
Frame = -3 / -3
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
LPFT T SPAP T V+ T LKYL P+MV PPCF H TL GT+PA AI R
Sbjct: 646 LPFTLTLTKSPAPATFVMRTRLKYLKPLMVNLTPPCFTHGTLLKRTGTIPARYSAILRKI 467
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAP 317
GM RSK RGGLH PPLS LGG + VAVT G H G T S PQ +P
Sbjct: 466 GMERSKWGRGGLHQPPLSLGRA*LGGQKLVAVTKIEGLPG*HHSGSFTHLISKQAPQLSP 287
Query: 316 SPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWAGFXGP 173
N VL A TPYP YP AP +VP+ S PP*KVA A F GP
Sbjct: 286 LLNRAVLNAAD*TPYPWLYRLPYPQAPPMVPEASLPP*KVACASFQGP 143
Score = 67.0 bits (140), Expect(2) = 2e-087
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +3 / +3
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFG 833
W + RNWGQ WQ L +SL+FR+ SD + +TSW+++P +W+FG
Sbjct: 657 WIPLSRNWGQNWQCSTVLVGQSLSFRITGSDPQTSTSWNIVPPNWEFG 800
Score = 26.3 bits (51), Expect(2) = 4e-043
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2 / -2
Query: 833 AELPVSGENVP*GGLAVVASHHPERQRLAGEVLPGLPHLPPVALHLRP 690
A+LP+ NVP G V + + E + L + LP L PV+ P
Sbjct: 800 AKLPIWRHNVPGCGGLRVTASYSEGEALPDQNGAALPILAPVSGQWNP 657
>gb|CX649475.1|CX649475 COLD1_35_B04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_35_B04_A029 5', mRNA sequence
Length = 670
Score = 270 bits (584), Expect(2) = 3e-087
Identities = 101/164 (61%), Positives = 126/164 (76%)
Frame = +3 / +1
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPS 368
AHATFYGG D SGT GACGY + +QGYGVQ+ A+ST LF G +CG C+E++CV+ P
Sbjct: 19 AHATFYGGSDASGTMGGACGYGNLYSQGYGVQSAALSTALFNSGLSCGACFEIKCVNDPE 198
Query: 369 GCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISY 548
C P +++VTAT+ CPPN D+GGWCNPPR HFDLSMP FL++A+ +AGIVP+ +
Sbjct: 199 WCHPGNPSILVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPIFLKMAEYRAGIVPVLF 378
Query: 549 RRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
RRV C KQGG+R+TI G KYFN+V ITNV GAGD+ VSVKGS+
Sbjct: 379 RRVPCVKQGGVRFTINGFKYFNLVLITNVAGAGDLVRVSVKGSQ 510
Score = 161 bits (346), Expect(2) = 4e-041
Identities = 84/163 (51%), Positives = 91/163 (55%)
Frame = -3 / -3
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
LPFT T SPAP T V+ T LKYL P+MV PPCF H TL GT+PA AI R
Sbjct: 506 LPFTLTLTKSPAPATFVMRTRLKYLKPLMVNLTPPCFTHGTLLKRTGTIPARYSAILRKI 327
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAP 317
GM RSK RGGLH PPLS LGG + VAVT G H G T S PQ +P
Sbjct: 326 GMERSKWGRGGLHQPPLSLGRA*LGGQKLVAVTKIEGLPG*HHSGSFTHLISKQAPQLSP 147
Query: 316 SPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWA 188
N VL A TPYP YP AP +VP+ S PP*KVA A
Sbjct: 146 LLNRAVLNAAD*TPYPWLYRLPYPQAPPMVPEASLPP*KVACA 18
Score = 73.0 bits (153), Expect(2) = 3e-087
Identities = 25/51 (49%), Positives = 35/51 (68%)
Frame = +3 / +1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTY 842
W + RNWGQ WQ L +SL+FRV SD R +TSW+++P +W+FG T+
Sbjct: 517 WIPLSRNWGQNWQCSTVLVGQSLSFRVTGSDRRTSTSWNIVPPNWEFGQTF 669
Score = 27.6 bits (54), Expect(2) = 4e-041
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2 / -2
Query: 833 AELPVSGENVP*GGLAVVASHHPERQRLAGEVLPGLPHLPPVALHLRP 690
A+LP+ NVP G V + + E + L + LP L PV+ P
Sbjct: 660 AKLPIWRHNVPGCGGPAVTASYSEGEALPDQDGAALPILAPVSGQWNP 517
>gb|DR070152.1|DR070152 RTDK1_11_D01.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_11_D01_A029 5', mRNA sequence
Length = 748
Score = 264 bits (572), Expect(2) = 1e-085
Identities = 99/162 (61%), Positives = 124/162 (76%)
Frame = +3 / +2
Query: 195 ATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPSGC 374
ATFYGG D SGT GACGY + +QGYGVQ+ A+ST LF G +CG C+E++CV+ P C
Sbjct: 2 ATFYGGSDASGTMGGACGYGNLYSQGYGVQSAALSTALFNSGLSCGACFEIKCVNDPEWC 181
Query: 375 KPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRR 554
P +++VTAT+ CPPN D+GGWCNPPR HFDLSMP FL++A+ +AGIVP+ +RR
Sbjct: 182 HPGNPSILVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPIFLKMAEYRAGIVPVLFRR 361
Query: 555 VACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
V C KQGG+R+TI G KYFN+V ITNV GAGD+ VSVKGS+
Sbjct: 362 VPCVKQGGVRFTINGFKYFNLVLITNVAGAGDLVRVSVKGSQ 487
Score = 160 bits (344), Expect(2) = 8e-041
Identities = 83/161 (51%), Positives = 90/161 (55%)
Frame = -3 / -2
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
LPFT T SPAP T V+ T LKYL P+MV PPCF H TL GT+PA AI R
Sbjct: 483 LPFTLTLTKSPAPATFVMRTRLKYLKPLMVNLTPPCFTHGTLLKRTGTIPARYSAILRKI 304
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAP 317
GM RSK RGGLH PPLS LGG + VAVT G H G T S PQ +P
Sbjct: 303 GMERSKWGRGGLHQPPLSLGRA*LGGQKLVAVTKIEGLPG*HHSGSFTHLISKQAPQLSP 124
Query: 316 SPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVA 194
N VL A TPYP YP AP +VP+ S PP*KVA
Sbjct: 123 LLNRAVLNAAD*TPYPWLYRLPYPQAPPMVPEASLPP*KVA 1
Score = 73.0 bits (153), Expect(2) = 1e-085
Identities = 24/55 (43%), Positives = 36/55 (65%)
Frame = +3 / +2
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
W + RNWGQ WQ L +SL+FR+ SD R +TSW+++P +W+FG T+ +
Sbjct: 494 WIPLSRNWGQNWQCSTVLVGQSLSFRITGSDRRTSTSWNIVPPNWEFGQTFSGKQ 658
Score = 27.6 bits (54), Expect(2) = 8e-041
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2 / -1
Query: 833 AELPVSGENVP*GGLAVVASHHPERQRLAGEVLPGLPHLPPVALHLRP 690
A+LP+ NVP G V + + E + L + LP L PV+ P
Sbjct: 637 AKLPIWRHNVPGCGGPAVTASYSEGEALPDQNGAALPILAPVSGQWNP 494
>gb|DT636492.1|DT636492 EST1151423 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGS45 3' end, mRNA sequence
Length = 833
Score = 263 bits (568), Expect(2) = 3e-085
Identities = 98/162 (60%), Positives = 123/162 (75%)
Frame = +3 / +3
Query: 195 ATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPSGC 374
ATFYGG D SGT GACGY + +QGYGVQ+ A+ST LF G +CG C+E++CV+ P C
Sbjct: 12 ATFYGGSDASGTMGGACGYGNLYSQGYGVQSAALSTALFNSGLSCGACFEIKCVNDPEWC 191
Query: 375 KPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRR 554
P +++VTAT+ CPPN D+GGWCNPPR HFDLSMP FL++A+ +AGIVP+ +RR
Sbjct: 192 HPGNPSILVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPIFLKMAEYRAGIVPVLFRR 371
Query: 555 VACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
V C KQGG+R+TI G KYFN+V ITNV GAGD+ VS KGS+
Sbjct: 372 VPCVKQGGVRFTINGFKYFNLVLITNVAGAGDLVRVSAKGSQ 497
Score = 158 bits (339), Expect(2) = 4e-040
Identities = 82/161 (50%), Positives = 89/161 (55%)
Frame = -3 / -2
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
LPF T SPAP T V+ T LKYL P+MV PPCF H TL GT+PA AI R
Sbjct: 493 LPFALTLTKSPAPATFVMRTRLKYLKPLMVNLTPPCFTHGTLLKRTGTIPARYSAILRKI 314
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAP 317
GM RSK RGGLH PPLS LGG + VAVT G H G T S PQ +P
Sbjct: 313 GMERSKWGRGGLHQPPLSLGRA*LGGQKLVAVTKIEGLPG*HHSGSFTHLISKQAPQLSP 134
Query: 316 SPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVA 194
N VL A TPYP YP AP +VP+ S PP*KVA
Sbjct: 133 LLNRAVLNAAD*TPYPWLYRLPYPQAPPMVPEASLPP*KVA 11
Score = 73.5 bits (154), Expect(2) = 3e-085
Identities = 25/55 (45%), Positives = 36/55 (65%)
Frame = +3 / +3
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
W + RNWGQ WQ L +SL+FRV SD R +TSW+++P +W+FG T+ +
Sbjct: 504 WIPLSRNWGQNWQCSTVLVGQSLSFRVTGSDRRTSTSWNIVPPNWEFGQTFSGKQ 668
Score = 27.6 bits (54), Expect(2) = 4e-040
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2 / -1
Query: 833 AELPVSGENVP*GGLAVVASHHPERQRLAGEVLPGLPHLPPVALHLRP 690
A+LP+ NVP G V + + E + L + LP L PV+ P
Sbjct: 647 AKLPIWRHNVPGCGGPAVTASYSEGEALPDQDGAALPILAPVSGQWNP 504
>gb|DR055148.1|DR055148 RTCA1_21_G09.g2_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_21_G09_A029 5', mRNA sequence
Length = 722
Score = 277 bits (599), Expect(2) = 4e-085
Identities = 104/174 (59%), Positives = 130/174 (74%)
Frame = +3 / +3
Query: 159 GKFTAGPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGC 338
G + GP AHATFYGG D SGT GACGY + +QGYGVQ+ A+ST LF G +CG C
Sbjct: 63 GVYQPGPWNEAHATFYGGSDASGTMGGACGYGNLYSQGYGVQSAALSTALFNSGLSCGAC 242
Query: 339 YEVRCVDSPSGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQ 518
+E++CV+ P C P +++VTAT+ CPPN D+GGWCNPPR HFDLSMP FL++A+
Sbjct: 243 FEIKCVNDPEWCHPGNPSILVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPIFLKMAE 422
Query: 519 EKAGIVPISYRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+AGIVP+ +RRV C KQGG+R+TI G KYFN+V ITNV GAGD+ VSVKGS+
Sbjct: 423 YRAGIVPVLFRRVPCVKQGGVRFTINGFKYFNLVLITNVAGAGDLVRVSVKGSQ 584
Score = 169 bits (364), Expect = 3e-041
Identities = 87/168 (51%), Positives = 94/168 (55%)
Frame = -3 / -2
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
LPFT T SPAP T V+ T LKYL P+MV PPCF H TL GT+PA AI R
Sbjct: 580 LPFTLTLTKSPAPATFVMRTRLKYLKPLMVNLTPPCFTHGTLLKRTGTIPARYSAILRKI 401
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAP 317
GM RSK RGGLH PPLS LGG + VAVT G H G T S PQ +P
Sbjct: 400 GMERSKWGRGGLHQPPLSLGRA*LGGQKLVAVTKIEGLPG*HHSGSFTHLISKQAPQLSP 221
Query: 316 SPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWAGFXGP 173
N VL A TPYP YP AP +VP+ S PP*KVA A F GP
Sbjct: 220 LLNRAVLNAAD*TPYPWLYRLPYPQAPPMVPEASLPP*KVACASFQGP 77
Score = 58.8 bits (122), Expect(2) = 4e-085
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +3 / +3
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLP 815
W + RNWGQ WQ L +SL+FR+ SD R +TSW+++P
Sbjct: 591 WIPLSRNWGQNWQCSTVLVGQSLSFRITGSDRRTSTSWNIVP 716
>gb|CF666895.1|CF666895 RTCNT1_26_G11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_26_G11_A029 5', mRNA sequence
Length = 779
Score = 268 bits (580), Expect(2) = 4e-084
Identities = 100/163 (61%), Positives = 124/163 (76%)
Frame = +3 / +1
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPS 368
AHATFYGG D +GT AGACGY + +QGYG T A+ST LF GA+CG C+E++CVD P
Sbjct: 130 AHATFYGGADAAGTMAGACGYGNLYSQGYGTNTAALSTALFNSGASCGACFEIKCVDDPQ 309
Query: 369 GCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISY 548
C P + ++V+TAT+ CPPN + D GGWCNPPREHFD++MPAF QI KAGIVPI Y
Sbjct: 310 WCLPGSPSIVITATNFCPPNYALANDDGGWCNPPREHFDMAMPAFEQIGIWKAGIVPIQY 489
Query: 549 RRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+RVAC K+GG+R+TI GN YF ++ +TNVGG G +A V VKGS
Sbjct: 490 KRVACVKEGGMRFTINGNYYFYLILVTNVGGDGVVADVKVKGS 618
Score = 136 bits (292), Expect(2) = 7e-036
Identities = 68/135 (50%), Positives = 77/135 (57%)
Frame = -3 / -1
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
PFT T+A +P+PPT V K P+MV +PP F HATL +GT+PAF I NAG
Sbjct: 614 PFTFTSATTPSPPTFVTRMR*K**LPLMVNLIPPSFTHATLLYWIGTIPAFQMPICSNAG 435
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAPS 314
+ SKCSRGGLHHPP S LGG + VAV T G H G ST S H PQ AP
Sbjct: 434 IAMSKCSRGGLHHPPSSFARA*LGGQKLVAVMTIEGLPGRHHCGSSTHFISKHAPQDAPL 255
Query: 313 PNSTVLTATVCTPYP 269
VL A V PYP
Sbjct: 254 LKRAVLRAAVLVPYP 210
Score = 64.3 bits (134), Expect(2) = 4e-084
Identities = 23/50 (46%), Positives = 34/50 (68%)
Frame = +3 / +1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVT 839
W + RNWGQ WQ+ L ++L+F+V +S R TS++V P+DW+FG T
Sbjct: 628 WLPLTRNWGQNWQSNSILKGQALSFQVTSSGGRTVTSYNVAPSDWQFGQT 777
Score = 35.0 bits (70), Expect(2) = 7e-036
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = -3 / -1
Query: 247 PHAPAVVPDPSRPP*KVAWAGFXGP 173
P APA+VP S PP*KVA A F P
Sbjct: 188 PQAPAIVPAASAPP*KVA*A*FHPP 114
>gb|AF085330.1|AF085330 Pinus taeda expansin mRNA, complete cds
Length = 998
Score = 163 bits (351), Expect(3) = 2e-083
Identities = 60/97 (61%), Positives = 79/97 (81%)
Frame = +3 / +3
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
T+ VTAT+ CPPN+ D+GGWCNPP +HFD++ PAFL+IA+ + GIVPI Y RV C +
Sbjct: 384 TVTVTATNFCPPNNALPNDNGGWCNPPLQHFDMAEPAFLKIAKYRGGIVPILYTRVPCLR 563
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+GGIR+T+ G+ YFN+V ITNVGGAGD+ AVS+KGS+
Sbjct: 564 KGGIRFTVNGHSYFNLVLITNVGGAGDVHAVSIKGSR 674
Score = 115 bits (245), Expect(3) = 2e-083
Identities = 43/77 (55%), Positives = 50/77 (64%)
Frame = +3 / +3
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG D SGT GACGY + +QGYG T A+ST LF DG +CG CYE+RC
Sbjct: 174 GGWESAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGLSCGACYEMRC 353
Query: 354 VDSPSGCKPNAATLVVT 404
D P C P T+ T
Sbjct: 354 NDDPQWCLPGTVTVTAT 404
Score = 112 bits (240), Expect(3) = 1e-044
Identities = 52/95 (54%), Positives = 60/95 (63%)
Frame = -3 / -2
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
PF +TA SPAPPTLV+ T LKY +P V R+PP TL * MGT+P AI+R AG
Sbjct: 667 PFMETAWTSPAPPTLVMSTRLKYEWPFTVKRIPPFLKQGTLV*RMGTIPPLYFAIFRKAG 488
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSV 389
SKC GGLHHPPLS GG + VAVT +V
Sbjct: 487 SAISKCCSGGLHHPPLSLGRALFGGQKLVAVTVTV 383
Score = 70.7 bits (148), Expect(3) = 2e-083
Identities = 27/58 (46%), Positives = 38/58 (65%)
Frame = +3 / +3
Query: 681 RVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
R W M RNWGQ WQ+ L +SL+F+V TSD R S +V P++W+FG T++ S+
Sbjct: 672 RSGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVVSNNVAPSNWQFGQTFEGSQ 845
Score = 65.2 bits (136), Expect(3) = 1e-044
Identities = 34/77 (44%), Positives = 38/77 (49%)
Frame = -3 / -2
Query: 403 VTTSVAALGLHPLGLSTQRTS*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVP 224
V +V G H G S R S* PQ +PS VL A V P P YP AP +VP
Sbjct: 403 VAVTVTVPGKHHWGSSLHRIS*QAPQLSPSLKRAVLKAAVFVP*PWL*RLPYPQAPPIVP 224
Query: 223 DPSRPP*KVAWAGFXGP 173
+ S PP* VAWA P
Sbjct: 223 EASLPP*NVAWADSHPP 173
Score = 40.9 bits (83), Expect(3) = 1e-044
Identities = 20/45 (44%), Positives = 24/45 (53%)
Frame = -3 / -2
Query: 838 VTPNFQSAGRTCHEVALRWSLVITRNVSDSQVRSSPVCHTCPQLR 704
V PN Q G T E +R SLV+T N +R +C CPQLR
Sbjct: 829 VWPNCQFEGATLFETTVRPSLVVTWNERLCPLRYELLCQFCPQLR 695
>gb|U64891.1|PTU64891 Pinus taeda expansin mRNA, partial cds
Length = 919
Score = 163 bits (351), Expect(3) = 2e-083
Identities = 60/97 (61%), Positives = 79/97 (81%)
Frame = +3 / +2
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
T+ VTAT+ CPPN+ D+GGWCNPP +HFD++ PAFL+IA+ + GIVPI Y RV C +
Sbjct: 233 TVTVTATNFCPPNNALPNDNGGWCNPPLQHFDMAEPAFLKIAKYRGGIVPILYTRVPCLR 412
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+GGIR+T+ G+ YFN+V ITNVGGAGD+ AVS+KGS+
Sbjct: 413 KGGIRFTVNGHSYFNLVLITNVGGAGDVHAVSIKGSR 523
Score = 115 bits (245), Expect(3) = 2e-083
Identities = 43/77 (55%), Positives = 50/77 (64%)
Frame = +3 / +2
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG D SGT GACGY + +QGYG T A+ST LF DG +CG CYE+RC
Sbjct: 23 GGWESAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGLSCGACYEMRC 202
Query: 354 VDSPSGCKPNAATLVVT 404
D P C P T+ T
Sbjct: 203 NDDPQWCLPGTVTVTAT 253
Score = 112 bits (240), Expect(3) = 1e-044
Identities = 52/95 (54%), Positives = 60/95 (63%)
Frame = -3 / -2
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
PF +TA SPAPPTLV+ T LKY +P V R+PP TL * MGT+P AI+R AG
Sbjct: 516 PFMETAWTSPAPPTLVMSTRLKYEWPFTVKRIPPFLKQGTLV*RMGTIPPLYFAIFRKAG 337
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSV 389
SKC GGLHHPPLS GG + VAVT +V
Sbjct: 336 SAISKCCSGGLHHPPLSLGRALFGGQKLVAVTVTV 232
Score = 70.7 bits (148), Expect(3) = 2e-083
Identities = 27/58 (46%), Positives = 38/58 (65%)
Frame = +3 / +2
Query: 681 RVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
R W M RNWGQ WQ+ L +SL+F+V TSD R S +V P++W+FG T++ S+
Sbjct: 521 RSGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVVSNNVAPSNWQFGQTFEGSQ 694
Score = 65.2 bits (136), Expect(3) = 1e-044
Identities = 34/77 (44%), Positives = 38/77 (49%)
Frame = -3 / -2
Query: 403 VTTSVAALGLHPLGLSTQRTS*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVP 224
V +V G H G S R S* PQ +PS VL A V P P YP AP +VP
Sbjct: 252 VAVTVTVPGKHHWGSSLHRIS*QAPQLSPSLKRAVLKAAVFVP*PWL*RLPYPQAPPIVP 73
Query: 223 DPSRPP*KVAWAGFXGP 173
+ S PP* VAWA P
Sbjct: 72 EASLPP*NVAWADSHPP 22
Score = 40.9 bits (83), Expect(3) = 1e-044
Identities = 20/45 (44%), Positives = 24/45 (53%)
Frame = -3 / -2
Query: 838 VTPNFQSAGRTCHEVALRWSLVITRNVSDSQVRSSPVCHTCPQLR 704
V PN Q G T E +R SLV+T N +R +C CPQLR
Sbjct: 678 VWPNCQFEGATLFETTVRPSLVVTWNERLCPLRYELLCQFCPQLR 544
>gb|CF402042.1|CF402042 RTWW1_16_F09.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_16_F09_A015 5', mRNA sequence
Length = 753
Score = 271 bits (587), Expect(2) = 4e-083
Identities = 103/163 (63%), Positives = 124/163 (76%)
Frame = +3 / +1
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPS 368
AHATFYGG D SGT GACGY + +QGYG T A+STVLF GA+CG C+E++CVD P
Sbjct: 115 AHATFYGGADASGTMQGACGYGNLYSQGYGTNTAALSTVLFNSGASCGSCFEIKCVDDPQ 294
Query: 369 GCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISY 548
C P + ++VVTAT+ CPPN D+GGWCNPPREHFD++MPAF QI KAGIVP+ Y
Sbjct: 295 WCLPGSPSIVVTATNFCPPNYALPNDNGGWCNPPREHFDMAMPAFEQIGIWKAGIVPVQY 474
Query: 549 RRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
RRVAC K+GGIR+TI GN YF ++ +TNVGG G +A V VKGS
Sbjct: 475 RRVACVKEGGIRFTINGNYYFYLILVTNVGGDGVVADVKVKGS 603
Score = 134 bits (288), Expect(3) = 2e-038
Identities = 69/135 (51%), Positives = 77/135 (57%)
Frame = -3 / -2
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
PFT T+A +P+PPT V K P+MV +PP F HATL GT+PAF I NAG
Sbjct: 599 PFTFTSATTPSPPTFVTRMR*K**LPLMVNLIPPSFTHATLLYWTGTIPAFHMPICSNAG 420
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAPS 314
+ SKCSRGGLH PPLS LGG + VAVTT G H G ST S H PQ AP
Sbjct: 419 IAMSKCSRGGLHQPPLSLGRA*LGGQKLVAVTTIEGLPGRHHWGSSTHFISKHDPQDAPL 240
Query: 313 PNSTVLTATVCTPYP 269
TVL A V P P
Sbjct: 239 LKRTVLRAAVLVP*P 195
Score = 57.9 bits (120), Expect(2) = 4e-083
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +3 / +1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKF 830
W + RNWGQ WQ L ++L+FRV +S R TS++V P+ W+F
Sbjct: 613 WLPLSRNWGQNWQCNTILKGQALSFRVTSSGGRPVTSYNVAPSHWQF 753
Score = 35.0 bits (70), Expect(3) = 2e-038
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -3 / -2
Query: 247 PHAPAVVPDPSRPP*KVA 194
PHAP +VP+ S PP*KVA
Sbjct: 173 PHAPCMVPEASAPP*KVA 120
Score = 28.6 bits (56), Expect(3) = 2e-038
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -3 / -2
Query: 829 NFQSAGRTCHEVALRWSLVITRNVSDSQVRSSPVCHTCPQLRFISVH 689
N Q G T EV R L +TR +R C CPQ R H
Sbjct: 752 NCQWEGATL*EVTGRPPLEVTRKERACPLRMVLHCQFCPQFRLRGSH 612
>gb|CF386766.1|CF386766 RTDR1_16_C08.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_16_C08_A015 5', mRNA
sequence
Length = 774
Score = 266 bits (576), Expect(2) = 7e-083
Identities = 102/168 (60%), Positives = 124/168 (73%)
Frame = +3 / +1
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G AHAT YGG D +G AGACGY + +QGYG T A+S +LF GAACG C+E++C
Sbjct: 118 GDWNSAHATLYGGGDAAGIMAGACGYGNLYSQGYGTNTAALSAILFDSGAACGACFEIKC 297
Query: 354 VDSPSGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGI 533
VD C P + ++V+TAT+ CPPN S D+GGWCNPPREHFD++MPAF QIA KAGI
Sbjct: 298 VDDSQWCLPGSPSVVITATNFCPPNYALSNDNGGWCNPPREHFDMAMPAFEQIAIWKAGI 477
Query: 534 VPISYRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
VP+ YRRV C K GGIR+TI GN+YF ++ ITNVGG GD+A V VKGS
Sbjct: 478 VPVQYRRVRCAKGGGIRFTIHGNRYFYLILITNVGGDGDVAEVMVKGS 621
Score = 167 bits (359), Expect(2) = 3e-041
Identities = 85/168 (50%), Positives = 97/168 (57%)
Frame = -3 / -2
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
PFT T+A SP+PPT VI K FP MV R+PP TL GT+PAF AI AG
Sbjct: 617 PFTITSATSPSPPTFVIRMR*K*RFP*MVNRIPPPLAQRTLLYWTGTIPAFQMAICSKAG 438
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAPS 314
+ SKCSRGGLHHPPLS D LGG + VAV T+ G H ST S PQAAP
Sbjct: 437 IAMSKCSRGGLHHPPLSLDRA*LGGQKLVAVITTDGLPGRHHCESSTHFISKQAPQAAPL 258
Query: 313 PNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWAGFXGPA 170
N L+A V PYP YP APA++P S PP*+VA A F P+
Sbjct: 257 SNRIALSAAVLVPYP*LYKFPYPQAPAMIPAASPPP*RVA*AEFQSPS 114
Score = 62.0 bits (129), Expect(2) = 7e-083
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +3 / +1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFG 833
W + RNWGQ WQ+ +L ++L+F+V +S TS++V P+DW+FG
Sbjct: 631 WLPLTRNWGQNWQSNTNLQGQALSFQVSSSSGHTITSYNVAPSDWQFG 774
Score = 22.1 bits (42), Expect(2) = 3e-041
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2 / -1
Query: 833 AELPVSGENVP*GGLAVVASHHPERQRLAGEVLPGLPHLPPVALHLRPLN 684
+ELPV +V * A + + L E+ GLP L PV +P++
Sbjct: 774 SELPVRRSHVI*SNGVATAGANLK**SLPLEIGIGLPVLSPVPRQWQPVS 625
>gb|CF400637.1|CF400637 RTWW1_6_B06.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_6_B06_A015 5', mRNA sequence
Length = 761
Score = 266 bits (576), Expect(2) = 7e-083
Identities = 102/168 (60%), Positives = 124/168 (73%)
Frame = +3 / +3
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G AHAT YGG D +G AGACGY + +QGYG T A+S +LF GAACG C+E++C
Sbjct: 105 GDWNSAHATLYGGGDAAGIMAGACGYGNLYSQGYGTNTAALSAILFDSGAACGACFEIKC 284
Query: 354 VDSPSGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGI 533
VD C P + ++V+TAT+ CPPN S D+GGWCNPPREHFD++MPAF QIA KAGI
Sbjct: 285 VDDSQWCLPGSPSVVITATNFCPPNYALSNDNGGWCNPPREHFDMAMPAFEQIAIWKAGI 464
Query: 534 VPISYRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
VP+ YRRV C K GGIR+TI GN+YF ++ ITNVGG GD+A V VKGS
Sbjct: 465 VPVQYRRVRCAKGGGIRFTIHGNRYFYLILITNVGGDGDVAEVMVKGS 608
Score = 167 bits (359), Expect(2) = 3e-041
Identities = 85/168 (50%), Positives = 97/168 (57%)
Frame = -3 / -2
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
PFT T+A SP+PPT VI K FP MV R+PP TL GT+PAF AI AG
Sbjct: 604 PFTITSATSPSPPTFVIRMR*K*RFP*MVNRIPPPLAQRTLLYWTGTIPAFQMAICSKAG 425
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAPS 314
+ SKCSRGGLHHPPLS D LGG + VAV T+ G H ST S PQAAP
Sbjct: 424 IAMSKCSRGGLHHPPLSLDRA*LGGQKLVAVITTDGLPGRHHCESSTHFISKQAPQAAPL 245
Query: 313 PNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWAGFXGPA 170
N L+A V PYP YP APA++P S PP*+VA A F P+
Sbjct: 244 SNRIALSAAVLVPYP*LYKFPYPQAPAMIPAASPPP*RVA*AEFQSPS 101
Score = 62.0 bits (129), Expect(2) = 7e-083
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +3 / +3
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFG 833
W + RNWGQ WQ+ +L ++L+F+V +S TS++V P+DW+FG
Sbjct: 618 WLPLTRNWGQNWQSNTNLQGQALSFQVSSSSGHTITSYNVAPSDWQFG 761
Score = 22.1 bits (42), Expect(2) = 3e-041
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2 / -1
Query: 833 AELPVSGENVP*GGLAVVASHHPERQRLAGEVLPGLPHLPPVALHLRPLN 684
+ELPV +V * A + + L E+ GLP L PV +P++
Sbjct: 761 SELPVRRSHVI*SNGVATAGANLK**SLPLEIGIGLPVLSPVPRQWQPVS 612
>gb|U64890.1|PTU64890 Pinus taeda expansin mRNA, partial cds
Length = 923
Score = 162 bits (349), Expect(3) = 8e-083
Identities = 60/96 (62%), Positives = 78/96 (81%)
Frame = +3 / +2
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
T+ VTAT+ CPPN+ D+GGWCNPP +HFD++ PAFL+IA+ + GIVPI Y RV C +
Sbjct: 233 TVTVTATNFCPPNNALPNDNGGWCNPPLQHFDMAEPAFLKIAKYRGGIVPILYTRVPCLR 412
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+GGIR+T+ G+ YFN+V ITNVGGAGD+ AVS+KGS
Sbjct: 413 KGGIRFTVNGHSYFNLVLITNVGGAGDVHAVSIKGS 520
Score = 115 bits (245), Expect(3) = 8e-083
Identities = 43/77 (55%), Positives = 50/77 (64%)
Frame = +3 / +2
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG D SGT GACGY + +QGYG T A+ST LF DG +CG CYE+RC
Sbjct: 23 GGWESAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGLSCGACYEMRC 202
Query: 354 VDSPSGCKPNAATLVVT 404
D P C P T+ T
Sbjct: 203 NDDPQWCLPGTVTVTAT 253
Score = 112 bits (240), Expect(3) = 2e-044
Identities = 52/95 (54%), Positives = 60/95 (63%)
Frame = -3 / -3
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
PF +TA SPAPPTLV+ T LKY +P V R+PP TL * MGT+P AI+R AG
Sbjct: 516 PFMETAWTSPAPPTLVMSTRLKYEWPFTVKRIPPFLKQGTLV*RMGTIPPLYFAIFRKAG 337
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSV 389
SKC GGLHHPPLS GG + VAVT +V
Sbjct: 336 SAISKCCSGGLHHPPLSLGRALFGGQKLVAVTVTV 232
Score = 69.8 bits (146), Expect(3) = 8e-083
Identities = 26/55 (47%), Positives = 37/55 (67%)
Frame = +3 / +2
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
W M RNWGQ WQ+ L +SL+F+V TSD R S +V P++W+FG T++ S+
Sbjct: 530 WQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTIVSNNVAPSNWQFGQTFEGSQ 694
Score = 65.2 bits (136), Expect(3) = 2e-044
Identities = 34/77 (44%), Positives = 38/77 (49%)
Frame = -3 / -3
Query: 403 VTTSVAALGLHPLGLSTQRTS*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVP 224
V +V G H G S R S* PQ +PS VL A V P P YP AP +VP
Sbjct: 252 VAVTVTVPGKHHWGSSLHRIS*QAPQLSPSLKRAVLKAAVFVP*PWL*RLPYPQAPPIVP 73
Query: 223 DPSRPP*KVAWAGFXGP 173
+ S PP* VAWA P
Sbjct: 72 EASLPP*NVAWADSHPP 22
Score = 40.5 bits (82), Expect(3) = 2e-044
Identities = 20/45 (44%), Positives = 24/45 (53%)
Frame = -3 / -3
Query: 838 VTPNFQSAGRTCHEVALRWSLVITRNVSDSQVRSSPVCHTCPQLR 704
V PN Q G T E +R SLV+T N +R +C CPQLR
Sbjct: 678 VWPNCQFEGATLFETIVRPSLVVTWNERLCPLRYELLCQFCPQLR 544
>gb|U64893.1|PTU64893 Pinus taeda expansin mRNA, partial cds
Length = 891
Score = 163 bits (351), Expect(3) = 8e-083
Identities = 60/97 (61%), Positives = 79/97 (81%)
Frame = +3 / +2
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
T+ VTAT+ CPPN+ D+GGWCNPP +HFD++ PAFL+IA+ + GIVPI Y RV C +
Sbjct: 233 TVTVTATNFCPPNNALPNDNGGWCNPPLQHFDMAEPAFLKIAKYRGGIVPILYTRVPCLR 412
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+GGIR+T+ G+ YFN+V ITNVGGAGD+ AVS+KGS+
Sbjct: 413 KGGIRFTVNGHSYFNLVLITNVGGAGDVNAVSIKGSR 523
Score = 113 bits (242), Expect(3) = 2e-043
Identities = 52/95 (54%), Positives = 60/95 (63%)
Frame = -3 / -1
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
PF +TA SPAPPTLV+ T LKY +P V R+PP TL * MGT+P AI+R AG
Sbjct: 516 PFMETALTSPAPPTLVMSTRLKYEWPFTVKRIPPFLKQGTLV*RMGTIPPLYFAIFRKAG 337
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSV 389
SKC GGLHHPPLS GG + VAVT +V
Sbjct: 336 SAISKCCSGGLHHPPLSLGRALFGGQKLVAVTVTV 232
Score = 113 bits (241), Expect(3) = 8e-083
Identities = 42/77 (54%), Positives = 50/77 (64%)
Frame = +3 / +2
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG D SGT GACGY + +QGYG T A+ST LF DG +CG CYE++C
Sbjct: 23 GGWESAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGLSCGACYEMQC 202
Query: 354 VDSPSGCKPNAATLVVT 404
D P C P T+ T
Sbjct: 203 NDDPQWCLPGTVTVTAT 253
Score = 70.7 bits (148), Expect(3) = 8e-083
Identities = 27/58 (46%), Positives = 38/58 (65%)
Frame = +3 / +2
Query: 681 RVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
R W M RNWGQ WQ+ L +SL+F+V TSD R S +V P++W+FG T++ S+
Sbjct: 521 RSGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVVSNNVAPSNWQFGQTFEGSQ 694
Score = 61.6 bits (128), Expect(3) = 2e-043
Identities = 33/77 (42%), Positives = 37/77 (48%)
Frame = -3 / -1
Query: 403 VTTSVAALGLHPLGLSTQRTS*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVP 224
V +V G H G S S* PQ +PS VL A V P P YP AP +VP
Sbjct: 252 VAVTVTVPGKHHWGSSLHCIS*QAPQLSPSLKRAVLKAAVFVP*PWL*RLPYPQAPPIVP 73
Query: 223 DPSRPP*KVAWAGFXGP 173
+ S PP* VAWA P
Sbjct: 72 EASLPP*NVAWADSQPP 22
Score = 40.0 bits (81), Expect(3) = 2e-043
Identities = 20/45 (44%), Positives = 24/45 (53%)
Frame = -3 / -1
Query: 838 VTPNFQSAGRTCHEVALRWSLVITRNVSDSQVRSSPVCHTCPQLR 704
V PN Q G T E +R SLV+T N +R +C CPQLR
Sbjct: 678 VWPNCQFEGATLFETTVRPSLVVTWNERLCPLR*ELLCQFCPQLR 544
>gb|DR120696.1|DR120696 RTMG1_31_G12.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_31_G12_A029 3', mRNA sequence
Length = 865
Score = 254 bits (549), Expect(2) = 5e-082
Identities = 96/163 (58%), Positives = 120/163 (73%)
Frame = +3 / -1
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPS 368
AHATFYGG D SGT GACGY + +QGYG T A+ST LF +GA CG CYE++C D
Sbjct: 685 AHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGATCGACYEMKCNDQSD 506
Query: 369 GCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISY 548
T+ VTAT+LCPPN D+GGWCNPP +HFD++ PAF QIA ++GIVPI +
Sbjct: 505 SQWCLPGTVTVTATNLCPPNSALPNDNGGWCNPPLQHFDMAQPAFQQIAIYRSGIVPIMF 326
Query: 549 RRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
RR+ C ++GG+R+TI G+ YFN+V ITNVGGAGD+ AVS+KGS
Sbjct: 325 RRIPCVREGGVRFTINGHSYFNLVLITNVGGAGDVEAVSIKGS 197
Score = 108 bits (230), Expect(2) = 5e-035
Identities = 52/97 (53%), Positives = 59/97 (60%)
Frame = -3 / +3
Query: 679 LLPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRN 500
L P +TA+ SPAPPTLV+ T LK P++V R PP H L +GTMP AI
Sbjct: 195 LEPLMETASTSPAPPTLVMSTKLK*ECPLIVNRTPPSLTHGILLNMIGTMPLLYMAIC*K 374
Query: 499 AGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSV 389
AG SKC RGGLHHPPLS LGG R VAVT +V
Sbjct: 375 AGCAMSKCWRGGLHHPPLSLGRAELGGQRLVAVTVTV 485
Score = 71.6 bits (150), Expect(2) = 5e-082
Identities = 26/52 (50%), Positives = 37/52 (71%)
Frame = +3 / -1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQ 845
W M RNWGQ WQ+ L ++L+F+V TSD R TS++V PA+W+FG T++
Sbjct: 187 WQTMSRNWGQNWQSNSYLNGQTLSFQVSTSDGRIITSYNVAPANWQFGQTFE 32
Score = 60.6 bits (126), Expect(2) = 5e-035
Identities = 29/52 (55%), Positives = 30/52 (57%)
Frame = -3 / +3
Query: 343 S*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWA 188
S* PQ AP S VL A V PYP YPHAP +VPD S PP* VA A
Sbjct: 531 S*QAPQVAPLLKSAVLRAAVFVPYPWLYKLPYPHAPPIVPDASLPP*NVACA 686
>gb|DR051531.1|DR051531 RTBOR1_30_E09.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_30_E09_A029 5', mRNA sequence
Length = 798
Score = 277 bits (599), Expect(2) = 6e-082
Identities = 104/174 (59%), Positives = 130/174 (74%)
Frame = +3 / +2
Query: 159 GKFTAGPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGC 338
G + GP AHATFYGG D SGT GACGY + +QGYGVQ+ A+ST LF G +CG C
Sbjct: 158 GVYQPGPWNEAHATFYGGSDASGTMGGACGYGNLYSQGYGVQSAALSTALFNSGLSCGAC 337
Query: 339 YEVRCVDSPSGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQ 518
+E++CV+ P C P +++VTAT+ CPPN D+GGWCNPPR HFDLSMP FL++A+
Sbjct: 338 FEIKCVNDPEWCHPGNPSILVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPIFLKMAE 517
Query: 519 EKAGIVPISYRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+AGIVP+ +RRV C KQGG+R+TI G KYFN+V ITNV GAGD+ VSVKGS+
Sbjct: 518 YRAGIVPVLFRRVPCVKQGGVRFTINGFKYFNLVLITNVAGAGDLVRVSVKGSQ 679
Score = 169 bits (364), Expect = 3e-041
Identities = 87/168 (51%), Positives = 94/168 (55%)
Frame = -3 / -1
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
LPFT T SPAP T V+ T LKYL P+MV PPCF H TL GT+PA AI R
Sbjct: 675 LPFTLTLTKSPAPATFVMRTRLKYLKPLMVNLTPPCFTHGTLLKRTGTIPARYSAILRKI 496
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAP 317
GM RSK RGGLH PPLS LGG + VAVT G H G T S PQ +P
Sbjct: 495 GMERSKWGRGGLHQPPLSLGRA*LGGQKLVAVTKIEGLPG*HHSGSFTHLISKQAPQLSP 316
Query: 316 SPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWAGFXGP 173
N VL A TPYP YP AP +VP+ S PP*KVA A F GP
Sbjct: 315 LLNRAVLNAAD*TPYPWLYRLPYPQAPPMVPEASLPP*KVACASFQGP 172
Score = 48.3 bits (99), Expect(2) = 6e-082
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3 / +2
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATS 800
W + RNWGQ WQ L +SL+FR+ SD R +TS
Sbjct: 686 WIPLSRNWGQNWQCSTVLVGQSLSFRITGSDRRTSTS 796
>gb|CX648930.1|CX648930 COLD1_31_H02.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_31_H02_A029 5', mRNA sequence
Length = 857
Score = 252 bits (545), Expect(2) = 2e-081
Identities = 95/163 (58%), Positives = 120/163 (73%)
Frame = +3 / +1
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPS 368
AHATFYGG D SGT GACGY + +QGYG T A+ST LF +GA CG CYE++C D
Sbjct: 175 AHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGATCGACYEMKCNDQSD 354
Query: 369 GCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISY 548
T+ VTAT+LCPPN D+GGWCNPP +HFD++ PAF +IA ++GIVPI +
Sbjct: 355 SQWCLPGTVTVTATNLCPPNSALPNDNGGWCNPPLQHFDMAQPAFQKIAIYRSGIVPIMF 534
Query: 549 RRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
RR+ C ++GG+R+TI G+ YFN+V ITNVGGAGD+ AVS+KGS
Sbjct: 535 RRIPCVREGGVRFTINGHSYFNLVLITNVGGAGDVEAVSIKGS 663
Score = 109 bits (233), Expect(2) = 6e-034
Identities = 52/97 (53%), Positives = 60/97 (61%)
Frame = -3 / -1
Query: 679 LLPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRN 500
L P +TA+ SPAPPTLV+ T LK P++V R PP H L +GTMP AI+
Sbjct: 665 LEPLMETASTSPAPPTLVMSTKLK*ECPLIVNRTPPSLTHGILLNMIGTMPLLYMAIF*K 486
Query: 499 AGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSV 389
AG SKC RGGLHHPPLS LGG R VAVT +V
Sbjct: 485 AGCAMSKCWRGGLHHPPLSLGRAELGGQRLVAVTVTV 375
Score = 71.6 bits (150), Expect(2) = 2e-081
Identities = 26/52 (50%), Positives = 37/52 (71%)
Frame = +3 / +1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQ 845
W M RNWGQ WQ+ L ++L+F+V TSD R TS++V PA+W+FG T++
Sbjct: 673 WQTMSRNWGQNWQSNSYLNGQTLSFQVSTSDGRIITSYNVAPANWQFGQTFE 828
Score = 55.6 bits (115), Expect(2) = 6e-034
Identities = 28/52 (53%), Positives = 29/52 (55%)
Frame = -3 / -1
Query: 343 S*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWA 188
S* PQ AP S VL A V P P YPHAP +VPD S PP* VA A
Sbjct: 329 S*QAPQVAPLLKSAVLRAAVFVP*PWLYKLPYPHAPPIVPDASLPP*NVACA 174
>gb|DR692635.1|DR692635 EST1082723 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADO50 3' end, mRNA sequence
Length = 902
Score = 168 bits (362), Expect(3) = 2e-081
Identities = 64/97 (65%), Positives = 79/97 (81%)
Frame = +3 / +2
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++VVTAT+ CPPN+ D+GGWCNPP EHFDLS P F IA+ +AGIVP+ YRRV C +
Sbjct: 344 SIVVTATNFCPPNNALPNDNGGWCNPPLEHFDLSEPVFQHIAKFRAGIVPVQYRRVPCQR 523
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+GGIR+TI G+ YFN+V ITNVGGAGD+ AVSVKG+K
Sbjct: 524 KGGIRFTINGHSYFNLVLITNVGGAGDVEAVSVKGAK 634
Score = 110 bits (235), Expect(2) = 1e-024
Identities = 53/95 (55%), Positives = 62/95 (65%)
Frame = -3 / -3
Query: 679 LLPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRN 500
L P T+TA+ SPAPPTLV+ T LKY P+MV R+PP TL GT+PA + A+
Sbjct: 633 LAPLTETASTSPAPPTLVMRTRLKYE*PLMVKRIPPFL*QGTLLY*TGTIPARNLAMC*K 454
Query: 499 AGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTT 395
G RSKCSRGGLH PPLS LGG + VAVTT
Sbjct: 453 TGSERSKCSRGGLHQPPLSLGSALLGGQKLVAVTT 349
Score = 106 bits (226), Expect(3) = 2e-081
Identities = 38/72 (52%), Positives = 48/72 (66%)
Frame = +3 / +2
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPS 368
AHATFYGG D +GT GACGY + +QGYG T A+ST LF +G +CG CYE++C D P
Sbjct: 149 AHATFYGGGDATGTMGGACGYGNLYSQGYGTNTAALSTALFNNGFSCGACYEIQCNDDPQ 328
Query: 369 GCKPNAATLVVT 404
C P + + T
Sbjct: 329 WCLPGSIVVTAT 364
Score = 68.0 bits (142), Expect(3) = 2e-081
Identities = 24/55 (43%), Positives = 37/55 (67%)
Frame = +3 / +2
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
W M RNWGQ WQ+ L +SL+F+V TSD + TS++V ++W+FG T+ ++
Sbjct: 641 WQPMSRNWGQNWQSNSYLDGQSLSFKVTTSDGKTVTSYNVASSNWQFGQTFAGNR 805
Score = 26.7 bits (52), Expect(2) = 1e-024
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3 / -3
Query: 247 PHAPAVVPDPSRPP*KVA 194
P AP +VP S PP* VA
Sbjct: 207 PQAPPIVPVASPPP*NVA 154
>gb|DT625757.1|DT625757 EST1157681 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA338 5' end, mRNA sequence
Length = 817
Score = 168 bits (362), Expect(3) = 2e-081
Identities = 64/97 (65%), Positives = 79/97 (81%)
Frame = +3 / +2
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++VVTAT+ CPPN+ D+GGWCNPP EHFDLS P F IA+ +AGIVP+ YRRV C +
Sbjct: 287 SIVVTATNFCPPNNALPNDNGGWCNPPLEHFDLSEPVFQHIAKFRAGIVPVQYRRVPCQR 466
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+GGIR+TI G+ YFN+V ITNVGGAGD+ AVSVKG+K
Sbjct: 467 KGGIRFTINGHSYFNLVLITNVGGAGDVEAVSVKGAK 577
Score = 110 bits (235), Expect(2) = 9e-025
Identities = 53/95 (55%), Positives = 62/95 (65%)
Frame = -3 / -2
Query: 679 LLPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRN 500
L P T+TA+ SPAPPTLV+ T LKY P+MV R+PP TL GT+PA + A+
Sbjct: 576 LAPLTETASTSPAPPTLVMRTRLKYE*PLMVKRIPPFL*QGTLLY*TGTIPARNLAMC*K 397
Query: 499 AGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTT 395
G RSKCSRGGLH PPLS LGG + VAVTT
Sbjct: 396 TGSERSKCSRGGLHQPPLSLGSALLGGQKLVAVTT 292
Score = 106 bits (227), Expect(3) = 2e-081
Identities = 38/72 (52%), Positives = 49/72 (68%)
Frame = +3 / +2
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPS 368
AHATFYGG D +GT GACGY + +QGYG T A+ST LF +G +CG CYE++C D P+
Sbjct: 92 AHATFYGGGDATGTMGGACGYGNLYSQGYGTNTAALSTALFNNGFSCGACYEIQCNDDPA 271
Query: 369 GCKPNAATLVVT 404
C P + + T
Sbjct: 272 WCLPGSIVVTAT 307
Score = 67.0 bits (140), Expect(3) = 2e-081
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = +3 / +2
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTY 842
W M RNWGQ WQ+ L +SL+F+V TSD + TS++V ++W+FG T+
Sbjct: 584 WQPMSRNWGQNWQSNSYLDGQSLSFKVTTSDGKTVTSYNVASSNWQFGQTF 736
Score = 26.7 bits (52), Expect(2) = 9e-025
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3 / -2
Query: 247 PHAPAVVPDPSRPP*KVA 194
P AP +VP S PP* VA
Sbjct: 150 PQAPPIVPVASPPP*NVA 97
>gb|CN784348.1|CN784348 EST783039 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAK45 5' end, mRNA sequence
Length = 778
Score = 168 bits (362), Expect(3) = 2e-081
Identities = 64/97 (65%), Positives = 79/97 (81%)
Frame = +3 / +2
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++VVTAT+ CPPN+ D+GGWCNPP EHFDLS P F IA+ +AGIVP+ YRRV C +
Sbjct: 287 SIVVTATNFCPPNNALPNDNGGWCNPPLEHFDLSEPVFQHIAKFRAGIVPVQYRRVPCQR 466
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+GGIR+TI G+ YFN+V ITNVGGAGD+ AVSVKG+K
Sbjct: 467 KGGIRFTINGHSYFNLVLITNVGGAGDVEAVSVKGAK 577
Score = 110 bits (235), Expect(2) = 8e-025
Identities = 53/95 (55%), Positives = 62/95 (65%)
Frame = -3 / -2
Query: 679 LLPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRN 500
L P T+TA+ SPAPPTLV+ T LKY P+MV R+PP TL GT+PA + A+
Sbjct: 576 LAPLTETASTSPAPPTLVMRTRLKYE*PLMVKRIPPFL*QGTLLY*TGTIPARNLAMC*K 397
Query: 499 AGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTT 395
G RSKCSRGGLH PPLS LGG + VAVTT
Sbjct: 396 TGSERSKCSRGGLHQPPLSLGSALLGGQKLVAVTT 292
Score = 106 bits (227), Expect(3) = 2e-081
Identities = 38/72 (52%), Positives = 49/72 (68%)
Frame = +3 / +2
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPS 368
AHATFYGG D +GT GACGY + +QGYG T A+ST LF +G +CG CYE++C D P+
Sbjct: 92 AHATFYGGGDATGTMGGACGYGNLYSQGYGTNTAALSTALFNNGFSCGACYEIQCNDDPA 271
Query: 369 GCKPNAATLVVT 404
C P + + T
Sbjct: 272 WCLPGSIVVTAT 307
Score = 67.0 bits (140), Expect(3) = 2e-081
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = +3 / +2
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTY 842
W M RNWGQ WQ+ L +SL+F+V TSD + TS++V ++W+FG T+
Sbjct: 584 WQPMSRNWGQNWQSNSYLDGQSLSFKVTTSDGKTVTSYNVASSNWQFGQTF 736
Score = 26.7 bits (52), Expect(2) = 8e-025
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3 / -2
Query: 247 PHAPAVVPDPSRPP*KVA 194
P AP +VP S PP* VA
Sbjct: 150 PQAPPIVPVASPPP*NVA 97
>gb|CF391855.1|CF391855 RTDR3_10_C05.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_10_C05_A022 5', mRNA
sequence
Length = 765
Score = 168 bits (362), Expect(3) = 2e-081
Identities = 64/97 (65%), Positives = 79/97 (81%)
Frame = +3 / +2
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++VVTAT+ CPPN+ D+GGWCNPP EHFDLS P F IA+ +AGIVP+ YRRV C +
Sbjct: 308 SIVVTATNFCPPNNALPNDNGGWCNPPLEHFDLSEPVFQHIAKFRAGIVPVQYRRVPCQR 487
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+GGIR+TI G+ YFN+V ITNVGGAGD+ AVSVKG+K
Sbjct: 488 KGGIRFTINGHSYFNLVLITNVGGAGDVEAVSVKGAK 598
Score = 110 bits (235), Expect(2) = 8e-025
Identities = 53/95 (55%), Positives = 62/95 (65%)
Frame = -3 / -1
Query: 679 LLPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRN 500
L P T+TA+ SPAPPTLV+ T LKY P+MV R+PP TL GT+PA + A+
Sbjct: 597 LAPLTETASTSPAPPTLVMRTRLKYE*PLMVKRIPPFL*QGTLLY*TGTIPARNLAMC*K 418
Query: 499 AGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTT 395
G RSKCSRGGLH PPLS LGG + VAVTT
Sbjct: 417 TGSERSKCSRGGLHQPPLSLGSALLGGQKLVAVTT 313
Score = 106 bits (227), Expect(3) = 2e-081
Identities = 38/72 (52%), Positives = 49/72 (68%)
Frame = +3 / +2
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPS 368
AHATFYGG D +GT GACGY + +QGYG T A+ST LF +G +CG CYE++C D P+
Sbjct: 113 AHATFYGGGDATGTMGGACGYGNLYSQGYGTNTAALSTALFNNGFSCGACYEIQCNDDPA 292
Query: 369 GCKPNAATLVVT 404
C P + + T
Sbjct: 293 WCLPGSIVVTAT 328
Score = 67.0 bits (140), Expect(3) = 2e-081
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = +3 / +2
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTY 842
W M RNWGQ WQ+ L +SL+F+V TSD + TS++V ++W+FG T+
Sbjct: 605 WQPMSRNWGQNWQSNSYLDGQSLSFKVTTSDGKTVTSYNVASSNWQFGQTF 757
Score = 26.7 bits (52), Expect(2) = 8e-025
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3 / -1
Query: 247 PHAPAVVPDPSRPP*KVA 194
P AP +VP S PP* VA
Sbjct: 171 PQAPPIVPVASPPP*NVA 118
>gb|DR099166.1|DR099166 STRR1_53_C12.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_53_C12_A033 5', mRNA sequence
Length = 823
Score = 249 bits (539), Expect(2) = 4e-081
Identities = 93/155 (60%), Positives = 118/155 (76%)
Frame = +3 / +3
Query: 216 DGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPSGCKPNAATL 395
D SGT GACGY + +QGYGVQ+ A+ST LF G +CG C+E++CV+ P C P ++
Sbjct: 6 DASGTMGGACGYGNLYSQGYGVQSAALSTALFNSGLSCGACFEIKCVNDPEWCHPGNPSI 185
Query: 396 VVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTKQG 575
+VTAT+ CPPN D+GGWCNPPR HFDLSMP FL++A+ +AGIVP+ +RRV C KQG
Sbjct: 186 LVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPIFLKMAEYRAGIVPVLFRRVPCVKQG 365
Query: 576 GIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
G+R+TI G KYFN+V ITNV GAGD+ VSVKGS+
Sbjct: 366 GVRFTINGFKYFNLVLITNVAGAGDLVRVSVKGSQ 470
Score = 148 bits (318), Expect(2) = 3e-037
Identities = 77/154 (50%), Positives = 84/154 (54%)
Frame = -3 / -1
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
LPFT T SPAP T V+ T LKYL P+MV PPCF H TL GT+PA AI R
Sbjct: 466 LPFTLTLTKSPAPATFVMRTRLKYLKPLMVNLTPPCFTHGTLLKRTGTIPARYSAILRKI 287
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAP 317
GM RSK RGGLH PPLS LGG + VAVT G H G T S PQ +P
Sbjct: 286 GMERSKWGRGGLHQPPLSLGRA*LGGQKLVAVTKIEGLPG*HHSGSFTHLISKQAPQLSP 107
Query: 316 SPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPS 215
N VL A TPYP YP AP +VP+ S
Sbjct: 106 LLNRAVLNAAD*TPYPWLYRLPYPQAPPMVPEAS 5
Score = 73.0 bits (153), Expect(2) = 4e-081
Identities = 24/55 (43%), Positives = 36/55 (65%)
Frame = +3 / +3
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
W + RNWGQ WQ L +SL+FR+ SD R +TSW+++P +W+FG T+ +
Sbjct: 477 WIPLSRNWGQNWQCSTVLVGQSLSFRITGSDRRTSTSWNIVPPNWEFGQTFSGKQ 641
Score = 27.6 bits (54), Expect(2) = 3e-037
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2 / -3
Query: 833 AELPVSGENVP*GGLAVVASHHPERQRLAGEVLPGLPHLPPVALHLRP 690
A+LP+ NVP G V + + E + L + LP L PV+ P
Sbjct: 620 AKLPIWRHNVPGCGGPAVTASYSEGEALPDQNGAALPILAPVSGQWNP 477
>gb|U64892.1|PTU64892 Pinus taeda expansin mRNA, partial cds
Length = 923
Score = 156 bits (336), Expect(3) = 6e-081
Identities = 57/97 (58%), Positives = 77/97 (79%)
Frame = +3 / +2
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
T+ +TAT+ CPPN+ D+GGWCNPP +HFD++ PAFL+IA+ + GIVPI Y RV C +
Sbjct: 233 TVTITATNFCPPNNALPNDNGGWCNPPLQHFDMAEPAFLKIAKYRGGIVPILYTRVPCLR 412
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+GGIR+T+ G+ FN+V ITNVGGAGD+ AVS+KG +
Sbjct: 413 KGGIRFTVNGHSCFNLVLITNVGGAGDVHAVSIKGPR 523
Score = 113 bits (242), Expect(3) = 6e-081
Identities = 42/77 (54%), Positives = 50/77 (64%)
Frame = +3 / +2
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG D SGT GACGY + +QGYG T A+ST LF DG +CG CYE++C
Sbjct: 23 GGWESAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGLSCGACYEMQC 202
Query: 354 VDSPSGCKPNAATLVVT 404
D P C P T+ T
Sbjct: 203 NDDPQWCLPGTVTITAT 253
Score = 107 bits (228), Expect(3) = 2e-041
Identities = 50/95 (52%), Positives = 59/95 (62%)
Frame = -3 / -3
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
PF +TA SPAPPTLV+ T LK+ +P V R+PP TL * MGT+P AI+R AG
Sbjct: 516 PFMETA*TSPAPPTLVMSTRLKHEWPFTVKRIPPFLKQGTLV*RMGTIPPLYFAIFRKAG 337
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSV 389
SKC GGLHHPPLS GG + VAV +V
Sbjct: 336 SAISKCCSGGLHHPPLSLGRALFGGQKLVAVIVTV 232
Score = 70.7 bits (148), Expect(3) = 6e-081
Identities = 27/58 (46%), Positives = 38/58 (65%)
Frame = +3 / +2
Query: 681 RVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
R W M RNWGQ WQ+ L +SL+F+V TSD R S +V P++W+FG T++ S+
Sbjct: 521 RSGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVVSNNVAPSNWQFGQTFEGSQ 694
Score = 60.2 bits (125), Expect(3) = 2e-041
Identities = 33/77 (42%), Positives = 36/77 (46%)
Frame = -3 / -3
Query: 403 VTTSVAALGLHPLGLSTQRTS*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVP 224
V V G H G S S* PQ +PS VL A V P P YP AP +VP
Sbjct: 252 VAVIVTVPGKHHWGSSLHCIS*QAPQLSPSLKRAVLKAAVFVP*PWL*RLPYPQAPPIVP 73
Query: 223 DPSRPP*KVAWAGFXGP 173
+ S PP* VAWA P
Sbjct: 72 EASLPP*NVAWADSHPP 22
Score = 40.9 bits (83), Expect(3) = 2e-041
Identities = 20/45 (44%), Positives = 24/45 (53%)
Frame = -3 / -3
Query: 838 VTPNFQSAGRTCHEVALRWSLVITRNVSDSQVRSSPVCHTCPQLR 704
V PN Q G T E +R SLV+T N +R +C CPQLR
Sbjct: 678 VWPNCQFEGATLFETTVRPSLVVTWNERLCPLRYELLCQFCPQLR 544
>gb|CX649938.1|CX649938 COLD1_42_B01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_42_B01_A029 5', mRNA sequence
Length = 862
Score = 160 bits (343), Expect(3) = 2e-080
Identities = 59/96 (61%), Positives = 77/96 (80%)
Frame = +3 / +1
Query: 393 LVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTKQ 572
+VVTAT+ CPPN+ ++GGWCNPP +HFDLS P F IA+ +AGIVP+ Y+RV C +
Sbjct: 355 IVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSEPVFQHIAKFRAGIVPVMYQRVPCHRS 534
Query: 573 GGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
GGIR+T+ G+ YFN+V ITNVGGAGD+ AVS+KGS+
Sbjct: 535 GGIRFTVNGHSYFNLVLITNVGGAGDVHAVSIKGSR 642
Score = 106 bits (227), Expect(3) = 2e-080
Identities = 39/72 (54%), Positives = 47/72 (65%)
Frame = +3 / +1
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPS 368
AHATFYGG D SGT GACGY + +QGYG T A+ST LF +G +CG C+ +RC D P
Sbjct: 157 AHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGACFAIRCNDDPQ 336
Query: 369 GCKPNAATLVVT 404
C P A + T
Sbjct: 337 WCLPGAIVVTAT 372
Score = 101 bits (215), Expect(3) = 2e-030
Identities = 51/95 (53%), Positives = 56/95 (58%)
Frame = -3 / -3
Query: 679 LLPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRN 500
L PF +TA SPAPPTLV+ T LKY P V R+PP TL GTMPA + AI
Sbjct: 641 LEPFMETAWTSPAPPTLVMRTRLKYECPFTVNRIPPDLWQGTL*YITGTMPALNLAICWK 462
Query: 499 AGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTT 395
G RSKC RGGLH PP LGG + VAVTT
Sbjct: 461 TGSERSKCWRGGLHQPPALLGSALLGGQKLVAVTT 357
Score = 72.5 bits (152), Expect(3) = 2e-080
Identities = 26/58 (44%), Positives = 38/58 (65%)
Frame = +3 / +1
Query: 681 RVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
R W M RNWGQ WQ+ L +SL+F+V TSD R TS++ P++W+FG T+ ++
Sbjct: 640 RTGWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVTSYNAAPSNWQFGQTFAGAQ 813
Score = 41.8 bits (85), Expect(3) = 2e-030
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -3 / -3
Query: 247 PHAPAVVPDPSRPP*KVAWA 188
PHAP +VP+ S PP*KVAWA
Sbjct: 215 PHAPPIVPEASPPP*KVAWA 156
Score = 33.1 bits (66), Expect(3) = 2e-030
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -2 / -2
Query: 833 AELPVSGENVP*GGLAVVASHHPERQRLAGEVLPGLPHLPPVALHLRP 690
A+LPV+G + + VA E + L EV LP L PVA H P
Sbjct: 792 AKLPVAGSGIVGSNSSPVAGGDLEGEALPVEVTVALPILAPVAGHWLP 649
>gb|DR011619.1|DR011619 HEAT1_6_G09.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_6_G09_A029 5', mRNA sequence
Length = 783
Score = 277 bits (599), Expect(2) = 5e-080
Identities = 104/174 (59%), Positives = 130/174 (74%)
Frame = +3 / +3
Query: 159 GKFTAGPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGC 338
G + GP AHATFYGG D SGT GACGY + +QGYGVQ+ A+ST LF G +CG C
Sbjct: 162 GVYQPGPWNEAHATFYGGSDASGTMGGACGYGNLYSQGYGVQSAALSTALFNSGLSCGAC 341
Query: 339 YEVRCVDSPSGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQ 518
+E++CV+ P C P +++VTAT+ CPPN D+GGWCNPPR HFDLSMP FL++A+
Sbjct: 342 FEIKCVNDPEWCHPGNPSILVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPIFLKMAE 521
Query: 519 EKAGIVPISYRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+AGIVP+ +RRV C KQGG+R+TI G KYFN+V ITNV GAGD+ VSVKGS+
Sbjct: 522 YRAGIVPVLFRRVPCVKQGGVRFTINGFKYFNLVLITNVAGAGDLVRVSVKGSQ 683
Score = 169 bits (364), Expect = 3e-041
Identities = 87/168 (51%), Positives = 94/168 (55%)
Frame = -3 / -3
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
LPFT T SPAP T V+ T LKYL P+MV PPCF H TL GT+PA AI R
Sbjct: 679 LPFTLTLTKSPAPATFVMRTRLKYLKPLMVNLTPPCFTHGTLLKRTGTIPARYSAILRKI 500
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAP 317
GM RSK RGGLH PPLS LGG + VAVT G H G T S PQ +P
Sbjct: 499 GMERSKWGRGGLHQPPLSLGRA*LGGQKLVAVTKIEGLPG*HHSGSFTHLISKQAPQLSP 320
Query: 316 SPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWAGFXGP 173
N VL A TPYP YP AP +VP+ S PP*KVA A F GP
Sbjct: 319 LLNRAVLNAAD*TPYPWLYRLPYPQAPPMVPEASLPP*KVACASFQGP 176
Score = 41.8 bits (85), Expect(2) = 5e-080
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3 / +3
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSD 782
W + RNWGQ WQ L +SL+FR+ SD
Sbjct: 690 WIPLSRNWGQNWQCSTVLVGQSLSFRITGSD 782
>gb|DR024833.1|DR024833 STRS1_67_F03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_67_F03_A034 5', mRNA sequence
Length = 778
Score = 277 bits (599), Expect(2) = 5e-080
Identities = 104/174 (59%), Positives = 130/174 (74%)
Frame = +3 / +1
Query: 159 GKFTAGPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGC 338
G + GP AHATFYGG D SGT GACGY + +QGYGVQ+ A+ST LF G +CG C
Sbjct: 157 GVYQPGPWNEAHATFYGGSDASGTMGGACGYGNLYSQGYGVQSAALSTALFNSGLSCGAC 336
Query: 339 YEVRCVDSPSGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQ 518
+E++CV+ P C P +++VTAT+ CPPN D+GGWCNPPR HFDLSMP FL++A+
Sbjct: 337 FEIKCVNDPEWCHPGNPSILVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPIFLKMAE 516
Query: 519 EKAGIVPISYRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+AGIVP+ +RRV C KQGG+R+TI G KYFN+V ITNV GAGD+ VSVKGS+
Sbjct: 517 YRAGIVPVLFRRVPCVKQGGVRFTINGFKYFNLVLITNVAGAGDLVRVSVKGSQ 678
Score = 169 bits (364), Expect = 3e-041
Identities = 87/168 (51%), Positives = 94/168 (55%)
Frame = -3 / -3
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
LPFT T SPAP T V+ T LKYL P+MV PPCF H TL GT+PA AI R
Sbjct: 674 LPFTLTLTKSPAPATFVMRTRLKYLKPLMVNLTPPCFTHGTLLKRTGTIPARYSAILRKI 495
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAP 317
GM RSK RGGLH PPLS LGG + VAVT G H G T S PQ +P
Sbjct: 494 GMERSKWGRGGLHQPPLSLGRA*LGGQKLVAVTKIEGLPG*HHSGSFTHLISKQAPQLSP 315
Query: 316 SPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWAGFXGP 173
N VL A TPYP YP AP +VP+ S PP*KVA A F GP
Sbjct: 314 LLNRAVLNAAD*TPYPWLYRLPYPQAPPMVPEASLPP*KVACASFQGP 171
Score = 41.8 bits (85), Expect(2) = 5e-080
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3 / +1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSD 782
W + RNWGQ WQ L +SL+FR+ SD
Sbjct: 685 WIPLSRNWGQNWQCSTVLVGQSLSFRITGSD 777
>gb|CF668487.1|CF668487 RTCNT1_36_F12.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_36_F12_A029 5', mRNA sequence
Length = 755
Score = 277 bits (599), Expect(2) = 5e-080
Identities = 104/174 (59%), Positives = 130/174 (74%)
Frame = +3 / +1
Query: 159 GKFTAGPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGC 338
G + GP AHATFYGG D SGT GACGY + +QGYGVQ+ A+ST LF G +CG C
Sbjct: 133 GVYQPGPWNEAHATFYGGSDASGTMGGACGYGNLYSQGYGVQSAALSTALFNSGLSCGAC 312
Query: 339 YEVRCVDSPSGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQ 518
+E++CV+ P C P +++VTAT+ CPPN D+GGWCNPPR HFDLSMP FL++A+
Sbjct: 313 FEIKCVNDPEWCHPGNPSILVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPIFLKMAE 492
Query: 519 EKAGIVPISYRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+AGIVP+ +RRV C KQGG+R+TI G KYFN+V ITNV GAGD+ VSVKGS+
Sbjct: 493 YRAGIVPVLFRRVPCVKQGGVRFTINGFKYFNLVLITNVAGAGDLVRVSVKGSQ 654
Score = 169 bits (364), Expect = 3e-041
Identities = 87/168 (51%), Positives = 94/168 (55%)
Frame = -3 / -1
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
LPFT T SPAP T V+ T LKYL P+MV PPCF H TL GT+PA AI R
Sbjct: 650 LPFTLTLTKSPAPATFVMRTRLKYLKPLMVNLTPPCFTHGTLLKRTGTIPARYSAILRKI 471
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAP 317
GM RSK RGGLH PPLS LGG + VAVT G H G T S PQ +P
Sbjct: 470 GMERSKWGRGGLHQPPLSLGRA*LGGQKLVAVTKIEGLPG*HHSGSFTHLISKQAPQLSP 291
Query: 316 SPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWAGFXGP 173
N VL A TPYP YP AP +VP+ S PP*KVA A F GP
Sbjct: 290 LLNRAVLNAAD*TPYPWLYRLPYPQAPPMVPEASLPP*KVACASFQGP 147
Score = 41.8 bits (85), Expect(2) = 5e-080
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3 / +1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSD 782
W + RNWGQ WQ L +SL+FR+ SD
Sbjct: 661 WIPLSRNWGQNWQCSTVLVGQSLSFRITGSD 753
>gb|DR010861.1|DR010861 HEAT1_1_F12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_1_F12_A029 5', mRNA sequence
Length = 733
Score = 160 bits (345), Expect(3) = 1e-079
Identities = 60/97 (61%), Positives = 79/97 (81%)
Frame = +3 / +2
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
T+ +TAT+ CPPN+ D+GGWCNPP +HFD++ PAF +IA+ K+GIVPI YRRV C +
Sbjct: 290 TVRITATNFCPPNNALPNDNGGWCNPPLQHFDMAEPAFEKIAKYKSGIVPILYRRVPCLR 469
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+GGIR+TI G+ YFN+V I+NVGGAGD+ AVS+K SK
Sbjct: 470 KGGIRFTIAGHSYFNLVLISNVGGAGDVQAVSIKSSK 580
Score = 108 bits (231), Expect(3) = 1e-079
Identities = 40/77 (51%), Positives = 49/77 (63%)
Frame = +3 / +2
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG D SGT GACGY + +QGYG T A+ST LF +G +CG CYE++C
Sbjct: 80 GGWESAHATFYGGSDASGTMGGACGYGNLYSQGYGTDTAALSTALFNNGFSCGACYEMKC 259
Query: 354 VDSPSGCKPNAATLVVT 404
D P C P + T
Sbjct: 260 NDDPQWCLPGTVRITAT 310
Score = 106 bits (226), Expect(2) = 9e-033
Identities = 48/94 (51%), Positives = 58/94 (61%)
Frame = -3 / -2
Query: 670 FTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAGM 491
F +TA SPAPPTL + T LKY +P +V R+PP H TL * +GT+P AI+ AG
Sbjct: 570 FIETAWTSPAPPTLEMSTRLKYEWPAIVKRIPPFLKHGTLL*RIGTIPLLYLAIFSKAGS 391
Query: 490 LRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSV 389
SKC GGLHHPPLS GG + VAV +V
Sbjct: 390 AMSKCCNGGLHHPPLSLGRALFGGQKFVAVILTV 289
Score = 67.0 bits (140), Expect(3) = 1e-079
Identities = 24/53 (45%), Positives = 34/53 (64%)
Frame = +3 / +2
Query: 675 SKRVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFG 833
S + W M RNWGQ WQ+ L +SL+F+V TSD R S++ P++W+FG
Sbjct: 572 SSKTGWQPMSRNWGQNWQSNSLLNGQSLSFKVTTSDGRTTVSYNTAPSNWQFG 730
Score = 54.7 bits (113), Expect(2) = 9e-033
Identities = 31/69 (44%), Positives = 33/69 (47%)
Frame = -3 / -2
Query: 379 GLHPLGLSTQRTS*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*K 200
G H G S S* PQ P N VL+A V P P YP AP +VPD S PP*
Sbjct: 285 GKHHWGSSLHFIS*QAPQLNPLLNRAVLSAAVSVP*PWLYRFPYPQAPPIVPDASLPP*N 106
Query: 199 VAWAGFXGP 173
VA A P
Sbjct: 105 VA*ADSQPP 79
>gb|CO197872.1|CO197872 GEO1_9_E12.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_9_E12_A029 5', mRNA sequence
Length = 812
Score = 160 bits (343), Expect(3) = 2e-079
Identities = 59/96 (61%), Positives = 77/96 (80%)
Frame = +3 / +3
Query: 393 LVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTKQ 572
+VVTAT+ CPPN+ ++GGWCNPP +HFDLS P F IA+ +AGIVP+ Y+RV C +
Sbjct: 372 IVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSEPVFQHIAKFRAGIVPVMYQRVPCHRS 551
Query: 573 GGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
GGIR+T+ G+ YFN+V ITNVGGAGD+ AVS+KGS+
Sbjct: 552 GGIRFTVNGHSYFNLVLITNVGGAGDVHAVSIKGSR 659
Score = 106 bits (227), Expect(3) = 2e-079
Identities = 39/72 (54%), Positives = 47/72 (65%)
Frame = +3 / +3
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPS 368
AHATFYGG D SGT GACGY + +QGYG T A+ST LF +G +CG C+ +RC D P
Sbjct: 174 AHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGACFAIRCNDDPQ 353
Query: 369 GCKPNAATLVVT 404
C P A + T
Sbjct: 354 WCLPGAIVVTAT 389
Score = 101 bits (215), Expect(3) = 1e-030
Identities = 51/95 (53%), Positives = 56/95 (58%)
Frame = -3 / -2
Query: 679 LLPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRN 500
L PF +TA SPAPPTLV+ T LKY P V R+PP TL GTMPA + AI
Sbjct: 658 LEPFMETAWTSPAPPTLVMRTRLKYECPFTVNRIPPDLWQGTL*YITGTMPALNLAICWK 479
Query: 499 AGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTT 395
G RSKC RGGLH PP LGG + VAVTT
Sbjct: 478 TGSERSKCWRGGLHQPPALLGSALLGGQKLVAVTT 374
Score = 69.3 bits (145), Expect(3) = 2e-079
Identities = 25/51 (49%), Positives = 34/51 (66%)
Frame = +3 / +3
Query: 681 RVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFG 833
R W M RNWGQ WQ+ L +SL+F+V TSD R TS++ P++W+FG
Sbjct: 657 RTGWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVTSYNAAPSNWQFG 809
Score = 41.8 bits (85), Expect(3) = 1e-030
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -3 / -2
Query: 247 PHAPAVVPDPSRPP*KVAWA 188
PHAP +VP+ S PP*KVAWA
Sbjct: 232 PHAPPIVPEASPPP*KVAWA 173
Score = 33.1 bits (66), Expect(3) = 1e-030
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -2 / -1
Query: 833 AELPVSGENVP*GGLAVVASHHPERQRLAGEVLPGLPHLPPVALHLRP 690
A+LPV+G + + VA E + L EV LP L PVA H P
Sbjct: 809 AKLPVAGSGIVGSNSSPVAGGDLEGEALPVEVTVALPILAPVAGHWLP 666
>gb|CO171305.1|CO171305 NDL1_20_C09.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_20_C09_A029 5', mRNA sequence
Length = 776
Score = 198 bits (426), Expect(3) = 3e-079
Identities = 72/119 (60%), Positives = 92/119 (77%)
Frame = +3 / +1
Query: 321 AACGGCYEVRCVDSPSGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPA 500
A+CG C+E++CVD P C P + ++V+TAT+ CPPN + D GGWCNPPREHFD++MPA
Sbjct: 259 ASCGACFEIKCVDDPQWCLPGSPSIVITATNFCPPNYALANDDGGWCNPPREHFDMAMPA 438
Query: 501 FLQIAQEKAGIVPISYRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
F QI KAGIVPI Y+RVAC K+GG+R+TI GN YF ++ +TNVGG G +A V VKGS
Sbjct: 439 FEQIGIWKAGIVPIQYKRVACVKEGGMRFTINGNYYFYLILVTNVGGDGVVADVKVKGS 615
Score = 116 bits (248), Expect(2) = 7e-030
Identities = 59/118 (50%), Positives = 68/118 (57%)
Frame = -3 / -1
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
PFT T+A +P+PPT V K P+MV +PP F ATL +GT+PAF I NAG
Sbjct: 611 PFTFTSATTPSPPTFVTRMR*K**LPLMVNLIPPSFTQATLLYWIGTIPAFQMPICSNAG 432
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAA 320
+ SKCSRGGLHHPP S LGG + VAV T G H G ST S H PQ A
Sbjct: 431 IAMSKCSRGGLHHPPSSFARA*LGGQKLVAVMTIEGLPGRHHCGSSTHFISKHAPQDA 258
Score = 73.5 bits (154), Expect(3) = 3e-079
Identities = 28/44 (63%), Positives = 32/44 (72%)
Frame = +3 / +2
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDG 320
AHATFYGG D +GT AGACGY + +QGYG T A+ST LF G
Sbjct: 128 AHATFYGGADAAGTMAGACGYGNLYSQGYGTNTAALSTALFNSG 259
Score = 64.3 bits (134), Expect(3) = 3e-079
Identities = 23/50 (46%), Positives = 34/50 (68%)
Frame = +3 / +1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVT 839
W + RNWGQ WQ+ L ++L+F+V +S R TS++V P+DW+FG T
Sbjct: 625 WLPLTRNWGQNWQSNSILKGQALSFQVTSSGGRTVTSYNVAPSDWQFGQT 774
Score = 35.0 bits (70), Expect(2) = 7e-030
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = -3 / -3
Query: 247 PHAPAVVPDPSRPP*KVAWAGFXGP 173
P APA+VP S PP*KVA A F P
Sbjct: 186 PQAPAIVPAASAPP*KVA*A*FHPP 112
>gb|CF386013.1|CF386013 RTDR1_7_F11.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_7_F11_A015 5', mRNA
sequence
Length = 773
Score = 274 bits (592), Expect(2) = 5e-079
Identities = 103/174 (59%), Positives = 129/174 (74%)
Frame = +3 / +1
Query: 159 GKFTAGPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGC 338
G + GP AHATFYGG D SGT GACGY + +QGYGVQ+ A+ST LF G +CG C
Sbjct: 151 GVYQPGPWNEAHATFYGGSDASGTMGGACGYGNLYSQGYGVQSAALSTALFNSGLSCGAC 330
Query: 339 YEVRCVDSPSGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQ 518
+E++CV+ P C P +++VTAT+ CPPN D+GGWCNPPR HFDLSMP FL++A+
Sbjct: 331 FEIKCVNDPEWCHPGNPSILVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPIFLKMAE 510
Query: 519 EKAGIVPISYRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+AGIVP+ +RRV C KQGG+R+TI G KYFN+V ITNV GA D+ VSVKGS+
Sbjct: 511 YRAGIVPVLFRRVPCVKQGGVRFTINGFKYFNLVLITNVAGAXDLVRVSVKGSQ 672
Score = 165 bits (355), Expect = 5e-040
Identities = 86/168 (51%), Positives = 93/168 (55%)
Frame = -3 / -1
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
LPFT T S AP T V+ T LKYL P+MV PPCF H TL GT+PA AI R
Sbjct: 668 LPFTLTLTKSXAPATFVMRTRLKYLKPLMVNLTPPCFTHGTLLKRTGTIPARYSAILRKI 489
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAP 317
GM RSK RGGLH PPLS LGG + VAVT G H G T S PQ +P
Sbjct: 488 GMERSKWGRGGLHQPPLSLGRA*LGGQKLVAVTKIEGLPG*HHSGSFTHLISKQAPQLSP 309
Query: 316 SPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWAGFXGP 173
N VL A TPYP YP AP +VP+ S PP*KVA A F GP
Sbjct: 308 LLNRAVLNAAD*TPYPWLYRLPYPQAPPMVPEASLPP*KVACASFQGP 165
Score = 41.8 bits (85), Expect(2) = 5e-079
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3 / +1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSD 782
W + RNWGQ WQ L +SL+FR+ SD
Sbjct: 679 WIPLSRNWGQNWQCSTVLVGQSLSFRITGSD 771
>gb|CO367487.1|CO367487 RTK1_34_D03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_34_D03_A029 5', mRNA sequence
Length = 788
Score = 252 bits (545), Expect(2) = 9e-079
Identities = 95/163 (58%), Positives = 120/163 (73%)
Frame = +3 / +1
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPS 368
AHATFYGG D SGT GACGY + +QGYG T A+ST LF +GA CG CYE++C D
Sbjct: 151 AHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGATCGACYEMKCNDQSD 330
Query: 369 GCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISY 548
T+ VTAT+LCPPN D+GGWCNPP +HFD++ PAF +IA ++GIVPI +
Sbjct: 331 SQWCLPGTVTVTATNLCPPNSALPNDNGGWCNPPLQHFDMAQPAFQKIAIYRSGIVPIMF 510
Query: 549 RRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
RR+ C ++GG+R+TI G+ YFN+V ITNVGGAGD+ AVS+KGS
Sbjct: 511 RRIPCVREGGVRFTINGHSYFNLVLITNVGGAGDVEAVSIKGS 639
Score = 109 bits (233), Expect(3) = 2e-035
Identities = 52/97 (53%), Positives = 60/97 (61%)
Frame = -3 / -1
Query: 679 LLPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRN 500
L P +TA+ SPAPPTLV+ T LK P++V R PP H L +GTMP AI+
Sbjct: 641 LEPLMETASTSPAPPTLVMSTKLK*ECPLIVNRTPPSLTHGILLNMIGTMPLLYMAIF*K 462
Query: 499 AGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSV 389
AG SKC RGGLHHPPLS LGG R VAVT +V
Sbjct: 461 AGCAMSKCWRGGLHHPPLSLGRAELGGQRLVAVTVTV 351
Score = 62.5 bits (130), Expect(2) = 9e-079
Identities = 23/46 (50%), Positives = 32/46 (69%)
Frame = +3 / +1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWK 827
W M RNWGQ WQ+ L ++L+F+V TSD R TS++V PA+W+
Sbjct: 649 WQTMSRNWGQNWQSNSYLNGQTLSFQVSTSDGRIITSYNVAPANWQ 786
Score = 55.6 bits (115), Expect(3) = 2e-035
Identities = 28/52 (53%), Positives = 29/52 (55%)
Frame = -3 / -1
Query: 343 S*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWA 188
S* PQ AP S VL A V P P YPHAP +VPD S PP* VA A
Sbjct: 305 S*QAPQVAPLLKSAVLRAAVFVP*PWLYKLPYPHAPPIVPDASLPP*NVACA 150
Score = 23.1 bits (44), Expect(3) = 2e-035
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2 / -3
Query: 827 LPVSGENVP*GGLAVVASHHPERQRLAGEVLPGLPHLPPVALHLRP 690
LP+ +V + +AS E + L ++ LP L PVA H P
Sbjct: 786 LPICRSDVIGSDDSPIASADLEGESLPIQIGVALPILSPVAGHCLP 649
>gb|DR095411.1|DR095411 STRR1_20_G09.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_G09_A033 5', mRNA sequence
Length = 853
Score = 164 bits (353), Expect(3) = 1e-078
Identities = 61/96 (63%), Positives = 78/96 (81%)
Frame = +3 / +1
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
T+ VTAT+LCPPN D+GGWCNPP +HFD++ PAF Q+A ++GIVPI +RRV C +
Sbjct: 337 TVTVTATNLCPPNYALPNDNGGWCNPPLQHFDMAQPAFQQLAIYRSGIVPIIFRRVPCVR 516
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+GG+R+TI GN YFN+V ITNVGGAGD+ AVS+KGS
Sbjct: 517 KGGVRFTINGNSYFNLVLITNVGGAGDVEAVSIKGS 624
Score = 111 bits (238), Expect(2) = 4e-034
Identities = 54/97 (55%), Positives = 61/97 (62%)
Frame = -3 / -3
Query: 679 LLPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRN 500
L P +TA+ SPAPPTLV+ T LK FP++V R PP H TL +GTMP A
Sbjct: 626 LEPLMETASTSPAPPTLVMSTKLK*EFPLIVNRTPPFLTHGTLLNMIGTMPLLYIASC*K 447
Query: 499 AGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSV 389
AG SKC RGGLHHPPLS LGGHR VAVT +V
Sbjct: 446 AG*AMSKCWRGGLHHPPLSLGRA*LGGHRFVAVTVTV 336
Score = 97.3 bits (206), Expect(3) = 1e-078
Identities = 35/57 (61%), Positives = 42/57 (73%)
Frame = +3 / +1
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVD 359
AHATFYGG D SGT GACGY + +QGYG T A+ST LF +GA CG CY+++C D
Sbjct: 136 AHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGATCGACYQMKCND 306
Score = 72.1 bits (151), Expect(3) = 1e-078
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = +3 / +1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQ 845
W M RNWGQ WQ+ L +SL+F+V TSD R TS++ PA+W+FG T++
Sbjct: 634 WQPMSRNWGQNWQSNSYLNGQSLSFQVSTSDGRTITSYNAAPANWQFGQTFE 789
Score = 53.8 bits (111), Expect(2) = 4e-034
Identities = 26/48 (54%), Positives = 27/48 (56%)
Frame = -3 / -3
Query: 331 PQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWA 188
PQ AP S VL A V P P YPHAP +VPD S PP* VA A
Sbjct: 278 PQVAPLLKSAVLRAAVFVP*PWLYKLPYPHAPPIVPDASLPP*NVACA 135
>gb|DR021085.1|DR021085 STRS1_42_F09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_42_F09_A034 3', mRNA sequence
Length = 848
Score = 164 bits (353), Expect(3) = 1e-078
Identities = 61/96 (63%), Positives = 78/96 (81%)
Frame = +3 / -3
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
T+ VTAT+LCPPN D+GGWCNPP +HFD++ PAF Q+A ++GIVPI +RRV C +
Sbjct: 495 TVTVTATNLCPPNYALPNDNGGWCNPPLQHFDMAQPAFQQLAIYRSGIVPIIFRRVPCVR 316
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+GG+R+TI GN YFN+V ITNVGGAGD+ AVS+KGS
Sbjct: 315 KGGVRFTINGNSYFNLVLITNVGGAGDVEAVSIKGS 208
Score = 111 bits (238), Expect(2) = 4e-034
Identities = 54/97 (55%), Positives = 61/97 (62%)
Frame = -3 / +2
Query: 679 LLPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRN 500
L P +TA+ SPAPPTLV+ T LK FP++V R PP H TL +GTMP A
Sbjct: 206 LEPLMETASTSPAPPTLVMSTKLK*EFPLIVNRTPPFLTHGTLLNMIGTMPLLYIASC*K 385
Query: 499 AGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSV 389
AG SKC RGGLHHPPLS LGGHR VAVT +V
Sbjct: 386 AG*AMSKCWRGGLHHPPLSLGRA*LGGHRFVAVTVTV 496
Score = 97.3 bits (206), Expect(3) = 1e-078
Identities = 35/57 (61%), Positives = 42/57 (73%)
Frame = +3 / -3
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVD 359
AHATFYGG D SGT GACGY + +QGYG T A+ST LF +GA CG CY+++C D
Sbjct: 696 AHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGATCGACYQMKCND 526
Score = 72.1 bits (151), Expect(3) = 1e-078
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = +3 / -3
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQ 845
W M RNWGQ WQ+ L +SL+F+V TSD R TS++ PA+W+FG T++
Sbjct: 198 WQPMSRNWGQNWQSNSYLNGQSLSFQVSTSDGRTITSYNAAPANWQFGQTFE 43
Score = 53.8 bits (111), Expect(2) = 4e-034
Identities = 26/48 (54%), Positives = 27/48 (56%)
Frame = -3 / +2
Query: 331 PQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWA 188
PQ AP S VL A V P P YPHAP +VPD S PP* VA A
Sbjct: 554 PQVAPLLKSAVLRAAVFVP*PWLYKLPYPHAPPIVPDASLPP*NVACA 697
>gb|CF668294.1|CF668294 RTCNT1_35_D04.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_D04_A029 5', mRNA sequence
Length = 751
Score = 164 bits (353), Expect(3) = 1e-078
Identities = 61/96 (63%), Positives = 78/96 (81%)
Frame = +3 / +1
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
T+ VTAT+LCPPN D+GGWCNPP +HFD++ PAF Q+A ++GIVPI +RRV C +
Sbjct: 205 TVTVTATNLCPPNYALPNDNGGWCNPPLQHFDMAQPAFQQLAIYRSGIVPIIFRRVPCVR 384
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+GG+R+TI GN YFN+V ITNVGGAGD+ AVS+KGS
Sbjct: 385 KGGVRFTINGNSYFNLVLITNVGGAGDVEAVSIKGS 492
Score = 111 bits (238), Expect(2) = 2e-033
Identities = 54/97 (55%), Positives = 61/97 (62%)
Frame = -3 / -3
Query: 679 LLPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRN 500
L P +TA+ SPAPPTLV+ T LK FP++V R PP H TL +GTMP A
Sbjct: 494 LEPLMETASTSPAPPTLVMSTKLK*EFPLIVNRTPPFLTHGTLLNMIGTMPLLYIASC*K 315
Query: 499 AGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSV 389
AG SKC RGGLHHPPLS LGGHR VAVT +V
Sbjct: 314 AG*AMSKCWRGGLHHPPLSLGRA*LGGHRFVAVTVTV 204
Score = 97.3 bits (206), Expect(3) = 1e-078
Identities = 35/57 (61%), Positives = 42/57 (73%)
Frame = +3 / +1
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVD 359
AHATFYGG D SGT GACGY + +QGYG T A+ST LF +GA CG CY+++C D
Sbjct: 4 AHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGATCGACYQMKCND 174
Score = 72.1 bits (151), Expect(3) = 1e-078
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = +3 / +1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQ 845
W M RNWGQ WQ+ L +SL+F+V TSD R TS++ PA+W+FG T++
Sbjct: 502 WQPMSRNWGQNWQSNSYLNGQSLSFQVSTSDGRTITSYNAAPANWQFGQTFE 657
Score = 51.5 bits (106), Expect(2) = 2e-033
Identities = 25/48 (52%), Positives = 26/48 (54%)
Frame = -3 / -3
Query: 331 PQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWA 188
P AP S VL A V P P YPHAP +VPD S PP* VA A
Sbjct: 146 PHVAPLLKSAVLRAAVFVP*PWLYKLPYPHAPPIVPDASLPP*NVACA 3
>gb|DR050310.1|DR050310 RTBOR1_22_D04.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_22_D04_A029 5', mRNA sequence
Length = 806
Score = 252 bits (545), Expect(2) = 1e-078
Identities = 95/163 (58%), Positives = 120/163 (73%)
Frame = +3 / +2
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPS 368
AHATFYGG D SGT GACGY + +QGYG T A+ST LF +GA CG CYE++C D
Sbjct: 173 AHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGATCGACYEMKCNDQSD 352
Query: 369 GCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISY 548
T+ VTAT+LCPPN D+GGWCNPP +HFD++ PAF +IA ++GIVPI +
Sbjct: 353 SQWCLPGTVTVTATNLCPPNSALPNDNGGWCNPPLQHFDMAQPAFQKIAIYRSGIVPIMF 532
Query: 549 RRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
RR+ C ++GG+R+TI G+ YFN+V ITNVGGAGD+ AVS+KGS
Sbjct: 533 RRIPCVREGGVRFTINGHSYFNLVLITNVGGAGDVEAVSIKGS 661
Score = 109 bits (233), Expect(2) = 6e-034
Identities = 52/97 (53%), Positives = 60/97 (61%)
Frame = -3 / -3
Query: 679 LLPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRN 500
L P +TA+ SPAPPTLV+ T LK P++V R PP H L +GTMP AI+
Sbjct: 663 LEPLMETASTSPAPPTLVMSTKLK*ECPLIVNRTPPSLTHGILLNMIGTMPLLYMAIF*K 484
Query: 499 AGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSV 389
AG SKC RGGLHHPPLS LGG R VAVT +V
Sbjct: 483 AGCAMSKCWRGGLHHPPLSLGRAELGGQRLVAVTVTV 373
Score = 62.0 bits (129), Expect(2) = 1e-078
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = +3 / +2
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADW 824
W M RNWGQ WQ+ L ++L+F+V TSD R TS++V PA+W
Sbjct: 671 WQTMSRNWGQNWQSNSYLNGQTLSFQVSTSDGRIITSYNVAPANW 805
Score = 55.6 bits (115), Expect(2) = 6e-034
Identities = 28/52 (53%), Positives = 29/52 (55%)
Frame = -3 / -3
Query: 343 S*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWA 188
S* PQ AP S VL A V P P YPHAP +VPD S PP* VA A
Sbjct: 327 S*QAPQVAPLLKSAVLRAAVFVP*PWLYKLPYPHAPPIVPDASLPP*NVACA 172
>gb|CX652556.1|CX652556 COLD1_59_H02.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_59_H02_A029 5', mRNA sequence
Length = 699
Score = 240 bits (519), Expect(2) = 2e-078
Identities = 89/148 (60%), Positives = 114/148 (77%)
Frame = +3 / +2
Query: 237 GACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPSGCKPNAATLVVTATDL 416
GACGY + +QGYGVQ+ A+ST LF G +CG C+E++CV+ P C P +++VTAT+
Sbjct: 2 GACGYGNLYSQGYGVQSAALSTALFNSGLSCGACFEIKCVNDPEWCHPGNPSILVTATNF 181
Query: 417 CPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTKQGGIRYTIT 596
CPPN D+GGWCNPPR HFDLSMP FL++A+ +AGIVP+ +RRV C KQGG+R+TI
Sbjct: 182 CPPNYALPNDNGGWCNPPRPHFDLSMPIFLKMAEYRAGIVPVLFRRVPCVKQGGVRFTIN 361
Query: 597 GNKYFNMVTITNVGGAGDIAAVSVKGSK 680
G KYFN+V ITNV GAGD+ VSVKGS+
Sbjct: 362 GFKYFNLVLITNVAGAGDLVRVSVKGSQ 445
Score = 141 bits (302), Expect(2) = 5e-035
Identities = 74/147 (50%), Positives = 79/147 (53%)
Frame = -3 / -1
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
LPFT T SPAP T V+ T LKYL P+MV PPCF H TL GT+PA AI R
Sbjct: 441 LPFTLTLTKSPAPATFVMRTRLKYLKPLMVNLTPPCFTHGTLLKRTGTIPARYSAILRKI 262
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAP 317
GM RSK RGGLH PPLS LGG + VAVT G H G T S PQ +P
Sbjct: 261 GMERSKWGRGGLHQPPLSLGRA*LGGQKLVAVTKIEGLPG*HHSGSFTHLISKQAPQLSP 82
Query: 316 SPNSTVLTATVCTPYPCARVSLYPHAP 236
N VL A TPYP YP AP
Sbjct: 81 LLNRAVLNAAD*TPYPWLYRLPYPQAP 1
Score = 73.5 bits (154), Expect(2) = 2e-078
Identities = 25/55 (45%), Positives = 36/55 (65%)
Frame = +3 / +2
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
W + RNWGQ WQ L +SL+FRV SD R +TSW+++P +W+FG T+ +
Sbjct: 452 WIPLSRNWGQNWQCSTVLVGQSLSFRVTGSDRRTSTSWNIVPPNWEFGQTFSGKQ 616
Score = 27.6 bits (54), Expect(2) = 5e-035
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2 / -3
Query: 833 AELPVSGENVP*GGLAVVASHHPERQRLAGEVLPGLPHLPPVALHLRP 690
A+LP+ NVP G V + + E + L + LP L PV+ P
Sbjct: 595 AKLPIWRHNVPGCGGPAVTASYSEGEALPDQDGAALPILAPVSGQWNP 452
>gb|CF471926.1|CF471926 RTDS1_7_A08.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_7_A08_A015 5', mRNA sequence
Length = 751
Score = 163 bits (351), Expect(3) = 2e-078
Identities = 61/96 (63%), Positives = 77/96 (80%)
Frame = +3 / +3
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
T+ VTAT+LCPPN D+GGWCNPP +HFD++ PAF Q A ++GIVPI +RRV C +
Sbjct: 252 TVTVTATNLCPPNYALPNDNGGWCNPPLQHFDMAQPAFQQFAIYRSGIVPIIFRRVPCVR 431
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+GG+R+TI GN YFN+V ITNVGGAGD+ AVS+KGS
Sbjct: 432 KGGVRFTINGNSYFNLVLITNVGGAGDVEAVSIKGS 539
Score = 111 bits (237), Expect(2) = 6e-034
Identities = 54/97 (55%), Positives = 61/97 (62%)
Frame = -3 / -1
Query: 679 LLPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRN 500
L P +TA+ SPAPPTLV+ T LK FP++V R PP H TL +GTMP A
Sbjct: 541 LEPLMETASTSPAPPTLVMSTKLK*EFPLIVNRTPPFLTHGTLLNMIGTMPLLYIANC*K 362
Query: 499 AGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSV 389
AG SKC RGGLHHPPLS LGGHR VAVT +V
Sbjct: 361 AG*AMSKCWRGGLHHPPLSLGRA*LGGHRFVAVTVTV 251
Score = 97.3 bits (206), Expect(3) = 2e-078
Identities = 35/57 (61%), Positives = 42/57 (73%)
Frame = +3 / +3
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVD 359
AHATFYGG D SGT GACGY + +QGYG T A+ST LF +GA CG CY+++C D
Sbjct: 51 AHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGATCGACYQMKCND 221
Score = 72.1 bits (151), Expect(3) = 2e-078
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = +3 / +3
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQ 845
W M RNWGQ WQ+ L +SL+F+V TSD R TS++ PA+W+FG T++
Sbjct: 549 WQPMSRNWGQNWQSNSYLNGQSLSFQVSTSDGRTITSYNAAPANWQFGQTFE 704
Score = 53.8 bits (111), Expect(2) = 6e-034
Identities = 26/48 (54%), Positives = 27/48 (56%)
Frame = -3 / -1
Query: 331 PQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWA 188
PQ AP S VL A V P P YPHAP +VPD S PP* VA A
Sbjct: 193 PQVAPLLKSAVLRAAVFVP*PWLYKLPYPHAPPIVPDASLPP*NVACA 50
>gb|DT624714.1|DT624714 EST1159049 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAI31 5' end, mRNA sequence
Length = 844
Score = 160 bits (344), Expect(3) = 3e-078
Identities = 59/96 (61%), Positives = 76/96 (79%)
Frame = +3 / +2
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
T+ VTAT+LCPPN D+GGWCNPP +HFD++ PAF I ++GIVPI +RRV C +
Sbjct: 335 TVTVTATNLCPPNSALPNDNGGWCNPPLQHFDMAQPAFQHIPIYRSGIVPIMFRRVPCVR 514
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+GG+R+TI G+ YFN+V ITNVGGAGD+ AVS+KGS
Sbjct: 515 KGGVRFTINGHSYFNLVLITNVGGAGDVEAVSIKGS 622
Score = 105 bits (223), Expect(2) = 2e-032
Identities = 50/95 (52%), Positives = 58/95 (61%)
Frame = -3 / -2
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
P +TA+ SPAPPTLV+ T LK P++V R PP H TL +GT+P I AG
Sbjct: 618 PLMETASTSPAPPTLVMSTKLK*ECPLIVNRTPPFLTHGTLLNMIGTIPLLYMGIC*KAG 439
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSV 389
SKC RGGLHHPPLS LGG R VAVT +V
Sbjct: 438 *AMSKCWRGGLHHPPLSLGRAELGGQRLVAVTVTV 334
Score = 97.7 bits (207), Expect(3) = 3e-078
Identities = 35/55 (63%), Positives = 42/55 (76%)
Frame = +3 / +2
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
AHATFYGG D SGT GACGY + +QGYG T A+ST LF +GA+CG CYE++C
Sbjct: 134 AHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGASCGACYEMKC 298
Score = 73.9 bits (155), Expect(3) = 3e-078
Identities = 27/52 (51%), Positives = 37/52 (71%)
Frame = +3 / +2
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQ 845
W M RNWGQ WQ+ L +SL+F+V TSD R TS++V PA+W+FG T++
Sbjct: 632 WQAMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTITSYNVAPANWQFGQTFE 787
Score = 54.7 bits (113), Expect(2) = 2e-032
Identities = 28/52 (53%), Positives = 29/52 (55%)
Frame = -3 / -2
Query: 343 S*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWA 188
S* PQ AP S VL A V P P YPHAP +VPD S PP* VA A
Sbjct: 288 S*QAPQLAPLLKSAVLRAAVFVP*PWLYRLPYPHAPPIVPDASLPP*NVACA 133
>gb|DR181356.1|DR181356 RTMNUT1_38_A01.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_38_A01_A029 5', mRNA sequence
Length = 765
Score = 160 bits (343), Expect(3) = 3e-078
Identities = 59/96 (61%), Positives = 77/96 (80%)
Frame = +3 / +1
Query: 393 LVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTKQ 572
+VVTAT+ CPPN+ ++GGWCNPP +HFDLS P F IA+ +AGIVP+ Y+RV C +
Sbjct: 331 IVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSEPVFQHIAKFRAGIVPVMYQRVPCHRS 510
Query: 573 GGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
GGIR+T+ G+ YFN+V ITNVGGAGD+ AVS+KGS+
Sbjct: 511 GGIRFTVNGHSYFNLVLITNVGGAGDVHAVSIKGSR 618
Score = 106 bits (227), Expect(3) = 3e-078
Identities = 39/72 (54%), Positives = 47/72 (65%)
Frame = +3 / +1
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPS 368
AHATFYGG D SGT GACGY + +QGYG T A+ST LF +G +CG C+ +RC D P
Sbjct: 133 AHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGACFAIRCNDDPQ 312
Query: 369 GCKPNAATLVVT 404
C P A + T
Sbjct: 313 WCLPGAIVVTAT 348
Score = 101 bits (215), Expect(3) = 1e-029
Identities = 51/95 (53%), Positives = 56/95 (58%)
Frame = -3 / -2
Query: 679 LLPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRN 500
L PF +TA SPAPPTLV+ T LKY P V R+PP TL GTMPA + AI
Sbjct: 617 LEPFMETAWTSPAPPTLVMRTRLKYECPFTVNRIPPDLWQGTL*YITGTMPALNLAICWK 438
Query: 499 AGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTT 395
G RSKC RGGLH PP LGG + VAVTT
Sbjct: 437 TGSERSKCWRGGLHQPPALLGSALLGGQKLVAVTT 333
Score = 65.2 bits (136), Expect(3) = 3e-078
Identities = 24/50 (48%), Positives = 32/50 (64%)
Frame = +3 / +1
Query: 681 RVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKF 830
R W M RNWGQ WQ+ L +SL+F+V TSD R TS++ P +W+F
Sbjct: 616 RTGWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVTSYNAAPNNWQF 765
Score = 41.8 bits (85), Expect(3) = 1e-029
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -3 / -2
Query: 247 PHAPAVVPDPSRPP*KVAWA 188
PHAP +VP+ S PP*KVAWA
Sbjct: 191 PHAPPIVPEASPPP*KVAWA 132
Score = 29.9 bits (59), Expect(3) = 1e-029
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -2 / -1
Query: 830 ELPVSGENVP*GGLAVVASHHPERQRLAGEVLPGLPHLPPVALHLRP 690
+LPV G + + VA E + L EV LP L PVA H P
Sbjct: 765 KLPVVGSGIVGSNSSPVAGGDLEGEALPVEVTVALPILAPVAGHWLP 625
>gb|DR080162.1|DR080162 RTFEPL1_20_E11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_20_E11_A029 5', mRNA sequence
Length = 740
Score = 277 bits (599), Expect(2) = 6e-078
Identities = 104/174 (59%), Positives = 130/174 (74%)
Frame = +3 / +3
Query: 159 GKFTAGPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGC 338
G + GP AHATFYGG D SGT GACGY + +QGYGVQ+ A+ST LF G +CG C
Sbjct: 138 GVYQPGPWNEAHATFYGGSDASGTMGGACGYGNLYSQGYGVQSAALSTALFNSGLSCGAC 317
Query: 339 YEVRCVDSPSGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQ 518
+E++CV+ P C P +++VTAT+ CPPN D+GGWCNPPR HFDLSMP FL++A+
Sbjct: 318 FEIKCVNDPEWCHPGNPSILVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPIFLKMAE 497
Query: 519 EKAGIVPISYRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+AGIVP+ +RRV C KQGG+R+TI G KYFN+V ITNV GAGD+ VSVKGS+
Sbjct: 498 YRAGIVPVLFRRVPCVKQGGVRFTINGFKYFNLVLITNVAGAGDLVRVSVKGSQ 659
Score = 169 bits (364), Expect = 3e-041
Identities = 87/168 (51%), Positives = 94/168 (55%)
Frame = -3 / -2
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
LPFT T SPAP T V+ T LKYL P+MV PPCF H TL GT+PA AI R
Sbjct: 655 LPFTLTLTKSPAPATFVMRTRLKYLKPLMVNLTPPCFTHGTLLKRTGTIPARYSAILRKI 476
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAP 317
GM RSK RGGLH PPLS LGG + VAVT G H G T S PQ +P
Sbjct: 475 GMERSKWGRGGLHQPPLSLGRA*LGGQKLVAVTKIEGLPG*HHSGSFTHLISKQAPQLSP 296
Query: 316 SPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWAGFXGP 173
N VL A TPYP YP AP +VP+ S PP*KVA A F GP
Sbjct: 295 LLNRAVLNAAD*TPYPWLYRLPYPQAPPMVPEASLPP*KVACASFQGP 152
Score = 35.0 bits (70), Expect(2) = 6e-078
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3 / +3
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTF 764
W + RNWGQ WQ L +SL+F
Sbjct: 666 WIPLSRNWGQNWQCSTVLVGQSLSF 740
>gb|DT633920.1|DT633920 EST1148851 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG023 3' end, mRNA sequence
Length = 903
Score = 185 bits (399), Expect(3) = 6e-078
Identities = 72/115 (62%), Positives = 87/115 (75%)
Frame = +3 / +1
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++VVTAT+ CPPN ++ D+GGWCNPP HFD++MPAF QIA+ K GIVP+ YRRV C K
Sbjct: 448 SVVVTATNFCPPNYAEANDNGGWCNPPLRHFDMAMPAFEQIAKVKGGIVPVRYRRVYCAK 627
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSKRVKWTEMKRNWGQVWQTG 734
GGIR+TI G +YF MV +TNVG AGD+ +VSVK S W MKRN GQ WQTG
Sbjct: 628 NGGIRFTINGQRYFIMVMVTNVGRAGDVISVSVKASNSDLWEPMKRN*GQNWQTG 792
Score = 121 bits (258), Expect(2) = 3e-040
Identities = 58/114 (50%), Positives = 68/114 (59%)
Frame = -3 / -2
Query: 733 PVCHTCPQLRFISVHLTRLLPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHAT 554
PVC P LRFI H + L TDT SPA PTLV +T++K P +V R+PP F T
Sbjct: 791 PVCQFWP*LRFIGSHRSELEALTDTEITSPALPTLVTITIMK*RCPFIVNRIPPFFAQYT 612
Query: 553 LR*EMGTMPAFSCAIWRNAGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTS 392
L * GT+P + AI AGM SK RGGLHHPPLS GG + VAVTT+
Sbjct: 611 LL*RTGTIPPLTLAICSKAGMAMSKWRRGGLHHPPLSLASA*FGGQKLVAVTTT 450
Score = 108 bits (230), Expect(3) = 6e-078
Identities = 40/57 (70%), Positives = 44/57 (77%)
Frame = +3 / +1
Query: 183 KPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
K AHATFYGG D SGT GACGY D +QGYG TVA+ST LF DG +CGGCYE+RC
Sbjct: 238 KHAHATFYGGSDASGTLGGACGYGDLYSQGYGTNTVALSTALFNDGLSCGGCYEIRC 408
Score = 65.2 bits (136), Expect(2) = 3e-040
Identities = 33/56 (58%), Positives = 35/56 (62%)
Frame = -3 / -2
Query: 349 RTS*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWAGF 182
R S*HPPQ PS N+ VL ATV P P S YP AP VP+ S PP*KVA A F
Sbjct: 404 RIS*HPPQLNPSLNNAVLRATVFVP*PWLYKSPYPQAPPNVPEASDPP*KVA*ACF 237
Score = 37.3 bits (75), Expect(3) = 6e-078
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3 / +1
Query: 741 LTCESLTFRVMTSDHRKATSWHVLPADWKFGVTY 842
L +SL+F V TSD A S V P +W+FG T+
Sbjct: 802 LVGQSLSFSVTTSDGNTAISPEVAPPNWQFGQTF 903
>gb|CO169500.1|CO169500 NDL1_7_B04.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_B04_A029 5', mRNA sequence
Length = 810
Score = 159 bits (342), Expect(3) = 9e-078
Identities = 60/96 (62%), Positives = 75/96 (78%)
Frame = +3 / +1
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
T+ VTAT+ CPPN D+GGWCNPP +HFD++ PAFLQIA K GIVPI +RRV C +
Sbjct: 361 TVTVTATNFCPPNYALPNDNGGWCNPPLQHFDMAQPAFLQIAIYKGGIVPIMFRRVPCVR 540
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+GG+R+TI G+ YFN+V ITNV AGD+ AVS+KGS
Sbjct: 541 KGGVRFTINGHSYFNLVLITNVADAGDVEAVSIKGS 648
Score = 105 bits (224), Expect(3) = 4e-031
Identities = 52/97 (53%), Positives = 59/97 (60%)
Frame = -3 / -2
Query: 679 LLPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRN 500
L P +TA+ SPA TLV+ T LK P++V R PP H TLR MGTMP AI R
Sbjct: 650 LEPLMETASTSPASATLVMSTKLK*ECPLIVNRTPPFLTHGTLRNIMGTMPPL*MAICRK 471
Query: 499 AGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSV 389
AG SKC RGGLHHPPLS GG + VAVT +V
Sbjct: 470 AG*AMSKCWRGGLHHPPLSLGSA*FGGQKLVAVTVTV 360
Score = 95.0 bits (201), Expect(3) = 9e-078
Identities = 34/55 (61%), Positives = 40/55 (72%)
Frame = +3 / +1
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
AHATFYGG D SGT GACGY + +QGYG T A+ST LF +G CG CYE++C
Sbjct: 160 AHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLTCGACYEMKC 324
Score = 76.2 bits (160), Expect(3) = 9e-078
Identities = 28/51 (54%), Positives = 37/51 (72%)
Frame = +3 / +1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTY 842
W EM RNWGQ WQ+ L +SL+FRV +SD R TS++V PA+W+FG T+
Sbjct: 658 WQEMSRNWGQNWQSNSYLNGQSLSFRVTSSDGRTVTSYNVAPANWQFGQTF 810
Score = 39.1 bits (79), Expect(3) = 4e-031
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = -3 / -2
Query: 838 VTPNFQSAGRTCHEVALRWSLVITRNVSDSQVRSSPVCHTCPQLRFIS 695
V PN Q AG T EV + SL++TR + +C CPQLR IS
Sbjct: 806 VWPNCQFAGATL*EVTVLPSLLVTRKERLCPFK*ELLCQFCPQLRDIS 663
Score = 33.6 bits (67), Expect(3) = 4e-031
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -3 / -2
Query: 247 PHAPAVVPDPSRPP*KVAWA 188
PHAP +VP+ S PP* VA A
Sbjct: 218 PHAPPIVPEASLPP*NVACA 159
>gb|DT624311.1|DT624311 EST1158586 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAD27 5' end, mRNA sequence
Length = 886
Score = 162 bits (349), Expect(3) = 1e-077
Identities = 60/96 (62%), Positives = 77/96 (80%)
Frame = +3 / +3
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
T+ VTAT+LCPPN D+GGWCNPP +HFD++ PAF IA ++GIVPI +RRV C +
Sbjct: 354 TVTVTATNLCPPNSALPNDNGGWCNPPLQHFDMAQPAFQHIAIYRSGIVPIMFRRVPCVR 533
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+GG+R+TI G+ YFN+V ITNVGGAGD+ AVS+KGS
Sbjct: 534 KGGVRFTINGHSYFNLVLITNVGGAGDVEAVSIKGS 641
Score = 106 bits (227), Expect(2) = 2e-032
Identities = 51/95 (53%), Positives = 59/95 (62%)
Frame = -3 / -1
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
P +TA+ SPAPPTLV+ T LK P++V R PP H TL +GT+P AI AG
Sbjct: 637 PLMETASTSPAPPTLVMSTKLK*ECPLIVNRTPPFLTHGTLLNMIGTIPLLYMAIC*KAG 458
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSV 389
SKC RGGLHHPPLS LGG R VAVT +V
Sbjct: 457 *AMSKCWRGGLHHPPLSLGRAELGGQRLVAVTVTV 353
Score = 95.9 bits (203), Expect(3) = 1e-077
Identities = 34/55 (61%), Positives = 41/55 (74%)
Frame = +3 / +3
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
AHATFYGG D SGT GACGY + +QGYG T A+ST LF +G+ CG CYE++C
Sbjct: 153 AHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGSTCGACYEMKC 317
Score = 71.6 bits (150), Expect(3) = 1e-077
Identities = 26/52 (50%), Positives = 37/52 (71%)
Frame = +3 / +3
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQ 845
W M RNWGQ WQ+ L ++L+F+V TSD R TS++V PA+W+FG T++
Sbjct: 651 WQAMSRNWGQNWQSNSYLNGQTLSFQVTTSDGRIITSYNVAPANWQFGQTFE 806
Score = 52.8 bits (109), Expect(2) = 2e-032
Identities = 27/52 (51%), Positives = 28/52 (53%)
Frame = -3 / -1
Query: 343 S*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWA 188
S* PQ P S VL A V P P YPHAP +VPD S PP* VA A
Sbjct: 307 S*QAPQVEPLLKSAVLRAAVFVP*PWLYRLPYPHAPPIVPDASLPP*NVACA 152
>gb|DR685073.1|DR685073 EST1075150 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAZ77 3' end, mRNA sequence
Length = 848
Score = 162 bits (349), Expect(3) = 1e-077
Identities = 60/96 (62%), Positives = 77/96 (80%)
Frame = +3 / +3
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
T+ VTAT+LCPPN D+GGWCNPP +HFD++ PAF IA ++GIVPI +RRV C +
Sbjct: 399 TVTVTATNLCPPNSALPNDNGGWCNPPLQHFDMAQPAFQHIATYRSGIVPIIFRRVPCVR 578
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+GG+R+TI G+ YFN+V ITNVGGAGD+ AVS+KGS
Sbjct: 579 KGGVRFTINGHPYFNLVLITNVGGAGDVEAVSIKGS 686
Score = 108 bits (231), Expect(2) = 4e-034
Identities = 53/97 (54%), Positives = 60/97 (61%)
Frame = -3 / -2
Query: 679 LLPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRN 500
L P +TA+ SPAPPTLV+ T LK P++V R PP H TL +GTMP AI
Sbjct: 688 LEPLMETASTSPAPPTLVMSTKLK*GCPLIVNRTPPFLTHGTLLKMIGTMPLLYVAIC*K 509
Query: 499 AGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSV 389
AG SKC RGGLHHPPLS LGG R VAVT +V
Sbjct: 508 AG*AMSKCWRGGLHHPPLSLGRAELGGQRLVAVTVTV 398
Score = 95.9 bits (203), Expect(3) = 1e-077
Identities = 34/55 (61%), Positives = 41/55 (74%)
Frame = +3 / +3
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
AHATFYGG D SGT GACGY + +QGYG T A+ST LF +GA CG CY+++C
Sbjct: 198 AHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGATCGACYQMKC 362
Score = 71.6 bits (150), Expect(3) = 1e-077
Identities = 26/51 (50%), Positives = 36/51 (70%)
Frame = +3 / +3
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTY 842
W M RNWGQ WQ+ L ++L+F+V TSD R TS++V PA+W+FG T+
Sbjct: 696 WQAMSRNWGQNWQSNSYLNGQALSFQVTTSDGRTITSYNVAPANWQFGQTF 848
Score = 57.0 bits (118), Expect(2) = 4e-034
Identities = 26/48 (54%), Positives = 27/48 (56%)
Frame = -3 / -2
Query: 331 PQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*KVAWA 188
PQ AP VL A V PYP YPHAP +VPD S PP* VA A
Sbjct: 340 PQVAPLLKRAVLRAAVLVPYPWLYKLPYPHAPPIVPDASLPP*NVACA 197
>gb|DT632413.1|DT632413 EST1147344 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFJ73 3' end, mRNA sequence
Length = 826
Score = 152 bits (327), Expect(3) = 1e-077
Identities = 58/96 (60%), Positives = 76/96 (79%)
Frame = +3 / +3
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++ VTAT+ CPPN+ ++GGWCNPP HFD++ PAF +IA+ K+GIVPI YRRV C +
Sbjct: 378 SVTVTATNFCPPNNALPNNNGGWCNPPLRHFDMAEPAFEKIAKYKSGIVPILYRRVLCLR 557
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
+GGIR+TI G YFN+V I+NVGGAG + AVS+KGS
Sbjct: 558 KGGIRFTINGLPYFNLVLISNVGGAGGVQAVSIKGS 665
Score = 111 bits (236), Expect(3) = 1e-077
Identities = 39/71 (54%), Positives = 49/71 (69%)
Frame = +3 / +3
Query: 192 HATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPSG 371
HATFYGG D SGT GACGY + +QGYG T A+ST LF +G +CG CYE++C+D P
Sbjct: 186 HATFYGGIDASGTMGGACGYGNLYSQGYGTDTAALSTALFNNGLSCGACYEMKCIDDPEW 365
Query: 372 CKPNAATLVVT 404
C P + T+ T
Sbjct: 366 CLPGSVTVTAT 398
Score = 108 bits (230), Expect(3) = 1e-041
Identities = 50/95 (52%), Positives = 59/95 (62%)
Frame = -3 / -1
Query: 673 PFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAG 494
PF +TA PAPPTL + T LKY P+MV R+PP TL * MGT+P AI+ AG
Sbjct: 661 PFIETAWTPPAPPTLEMSTRLKYGRPLMVKRIPPFLKQRTLL*RMGTIPLLYLAIFSKAG 482
Query: 493 MLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSV 389
SKC RGGLHHPPL LGG + VAVT ++
Sbjct: 481 SAMSKCRRGGLHHPPLLLGRALLGGQKLVAVTVTL 377
Score = 66.6 bits (139), Expect(3) = 1e-077
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +3 / +3
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVT 839
W M RNWGQ WQ+ L +SL+F+V TSD R S++ P++W+FG T
Sbjct: 675 WQPMSRNWGQNWQSNSFLNGQSLSFKVTTSDGRTIVSYNAAPSNWQFGQT 824
Score = 63.4 bits (132), Expect(3) = 1e-041
Identities = 32/70 (45%), Positives = 36/70 (51%)
Frame = -3 / -1
Query: 403 VTTSVAALGLHPLGLSTQRTS*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVP 224
V +V G H G S S*H PQ +P N VL A V P P YPHAP +VP
Sbjct: 397 VAVTVTLPGKHHSGSSIHFIS*HAPQLSPLLNKAVLRAAVSVP*PWLYRFPYPHAPPIVP 218
Query: 223 DPSRPP*KVA 194
+ S PP* VA
Sbjct: 217 EASMPP*NVA 188
Score = 37.3 bits (75), Expect(3) = 1e-041
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = -3 / -1
Query: 838 VTPNFQSAGRTCHEVALRWSLVITRNVSDSQVRSSPVCHTCPQLRFISVHL 686
V PN Q G +E +R SLV+T + +C CPQLR I L
Sbjct: 823 VWPNCQLEGAALYETIVRPSLVVTLKDRLCPFKKELLCQFCPQLRDIGCQL 671
>gb|DR688987.1|DR688987 EST1079073 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACC87 3' end, mRNA sequence
Length = 772
Score = 168 bits (362), Expect(3) = 2e-077
Identities = 64/97 (65%), Positives = 79/97 (81%)
Frame = +3 / +2
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
++VVTAT+ CPPN+ D+GGWCNPP EHFDLS P F IA+ +AGIVP+ YRRV C +
Sbjct: 341 SIVVTATNFCPPNNALPNDNGGWCNPPLEHFDLSEPVFQHIAKFRAGIVPVQYRRVPCQR 520
Query: 570 QGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGSK 680
+GGIR+TI G+ YFN+V ITNVGGAGD+ AVSVKG+K
Sbjct: 521 KGGIRFTINGHSYFNLVLITNVGGAGDVEAVSVKGAK 631
Score = 112 bits (240), Expect(2) = 2e-025
Identities = 53/95 (55%), Positives = 63/95 (66%)
Frame = -3 / -2
Query: 679 LLPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRN 500
L P T+TA+ SPAPPTLV+ T LKY +P+MV R+PP TL GT+PA + A+
Sbjct: 630 LAPLTETASTSPAPPTLVMRTRLKYEWPLMVKRIPPFL*QGTLLY*TGTIPARNLAMC*K 451
Query: 499 AGMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTT 395
G RSKCSRGGLH PPLS LGG + VAVTT
Sbjct: 450 TGSERSKCSRGGLHQPPLSLGSALLGGQKLVAVTT 346
Score = 106 bits (227), Expect(3) = 2e-077
Identities = 38/72 (52%), Positives = 49/72 (68%)
Frame = +3 / +2
Query: 189 AHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPS 368
AHATFYGG D +GT GACGY + +QGYG T A+ST LF +G +CG CYE++C D P+
Sbjct: 146 AHATFYGGGDATGTMGGACGYGNLYSQGYGTNTAALSTALFNNGFSCGACYEIQCNDDPA 325
Query: 369 GCKPNAATLVVT 404
C P + + T
Sbjct: 326 WCLPGSIVVTAT 361
Score = 54.2 bits (112), Expect(3) = 2e-077
Identities = 21/43 (48%), Positives = 28/43 (65%)
Frame = +3 / +2
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPA 818
W M RNWGQ WQ+ L +SL+F+V TSD + TS++V A
Sbjct: 638 WQPMSRNWGQNWQSNSYLDGQSLSFKVTTSDGKTVTSYNVASA 766
Score = 26.7 bits (52), Expect(2) = 2e-025
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3 / -2
Query: 247 PHAPAVVPDPSRPP*KVA 194
P AP +VP S PP* VA
Sbjct: 204 PQAPPIVPVASPPP*NVA 151
>gb|DR180723.1|DR180723 RTMNUT1_34_A06.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_34_A06_A029 5', mRNA sequence
Length = 773
Score = 112 bits (239), Expect(4) = 4e-077
Identities = 40/68 (58%), Positives = 55/68 (80%)
Frame = +3 / +3
Query: 390 TLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVACTK 569
T+ +TAT+ CPPN+ D+GGWCNPP +HFD++ PAF +IA+ K+GIVPI YRR+ C +
Sbjct: 303 TVRITATNFCPPNNALPNDNGGWCNPPLQHFDMAEPAFEKIAKYKSGIVPILYRRIPCLR 482
Query: 570 QGGIRYTI 593
+GGIR+TI
Sbjct: 483 KGGIRFTI 506
Score = 111 bits (238), Expect(4) = 4e-077
Identities = 41/77 (53%), Positives = 51/77 (66%)
Frame = +3 / +3
Query: 174 GPXKPAHATFYGGRDGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDGAACGGCYEVRC 353
G + AHATFYGG D SGT GACGY++ +QGYG TVA+ST LF +G +CG CYE++C
Sbjct: 93 GGWESAHATFYGGSDASGTMGGACGYENLYSQGYGTDTVALSTALFNNGFSCGACYEMKC 272
Query: 354 VDSPSGCKPNAATLVVT 404
D P C P + T
Sbjct: 273 NDDPQWCLPGTVRITAT 323
Score = 74.4 bits (156), Expect(4) = 4e-077
Identities = 27/60 (45%), Positives = 39/60 (65%)
Frame = +3 / +3
Query: 675 SKRVKWTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
S + W M RNWGQ WQ+ L +SL+F+V TSD R S++ P++W+FG T+Q S+
Sbjct: 582 SSKTGWQPMSRNWGQNWQSNSLLNGQSLSFKVTTSDGRTTVSYNTAPSNWQFGQTFQGSQ 761
Score = 70.7 bits (148), Expect(4) = 3e-031
Identities = 32/68 (47%), Positives = 39/68 (57%)
Frame = -3 / -2
Query: 592 MVYRMPPCFVHATLR*EMGTMPAFSCAIWRNAGMLRSKCSRGGLHHPPLSADCWSLGGHR 413
+V R+PP H L * +GT+P AI+ AG SKC GGLHHPPLS GG +
Sbjct: 505 IVKRIPPFLKHGILL*RIGTIPLLYLAIFSKAGSAMSKCCNGGLHHPPLSLGRALFGGQK 326
Query: 412 SVAVTTSV 389
VAV +V
Sbjct: 325 FVAVILTV 302
Score = 57.4 bits (119), Expect(4) = 3e-031
Identities = 32/69 (46%), Positives = 34/69 (49%)
Frame = -3 / -2
Query: 379 GLHPLGLSTQRTS*HPPQAAPSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPSRPP*K 200
G H G S S* PQ P N VL+ATV P P YP AP +VPD S PP*
Sbjct: 298 GKHHWGSSLHFIS*QAPQLNPLLNRAVLSATVSVP*PWLYRFSYPQAPPIVPDASLPP*N 119
Query: 199 VAWAGFXGP 173
VA A P
Sbjct: 118 VA*ADSQPP 92
Score = 48.3 bits (99), Expect(4) = 4e-077
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +3 / +3
Query: 600 NKYFNMVTITNVGGAGDIAAVSVKGSK 680
+ YFN+V I+NVGGAGD+ AVS+K SK
Sbjct: 510 HSYFNLVLISNVGGAGDVQAVSIKSSK 590
Score = 34.1 bits (68), Expect(4) = 3e-031
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -3 / -2
Query: 670 FTDTAAMSPAPPTLVIVTMLKYLFPVM 590
F +TA SPAPPTL + T LKY + ++
Sbjct: 580 FIETAWTSPAPPTLEMSTRLKYEWAIV 500
Score = 29.0 bits (57), Expect(4) = 3e-031
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3 / -2
Query: 844 WYVTPNFQSAGRTCHEVALRWSLVIT 767
W V PN Q G +E +R SLV+T
Sbjct: 751 WNVWPNCQLEGAVLYETVVRPSLVVT 674
>gb|DR098553.1|DR098553 STRR1_46_F12.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_46_F12_A033 3', mRNA sequence
Length = 697
Score = 200 bits (432), Expect(3) = 1e-076
Identities = 73/121 (60%), Positives = 94/121 (77%)
Frame = +3 / -1
Query: 318 GAACGGCYEVRCVDSPSGCKPNAATLVVTATDLCPPNDQQSADSGGWCNPPREHFDLSMP 497
G +CG C+E++CV+ P C P +++VTAT+ CPPN D+GGWCNPPR HFDLSMP
Sbjct: 592 GLSCGACFEIKCVNDPEWCHPGNPSILVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMP 413
Query: 498 AFLQIAQEKAGIVPISYRRVACTKQGGIRYTITGNKYFNMVTITNVGGAGDIAAVSVKGS 677
FL++A+ +AGIVP+ +RRV C KQGG+R+TI G KYFN+V ITNV GAGD+ VSVKGS
Sbjct: 412 IFLKMAEYRAGIVPVLFRRVPCVKQGGVRFTINGFKYFNLVLITNVAGAGDLVRVSVKGS 233
Query: 678 K 680
+
Sbjct: 232 Q 230
Score = 121 bits (259), Expect(3) = 3e-034
Identities = 62/120 (51%), Positives = 67/120 (55%)
Frame = -3 / +3
Query: 676 LPFTDTAAMSPAPPTLVIVTMLKYLFPVMVYRMPPCFVHATLR*EMGTMPAFSCAIWRNA 497
LPFT T SPAP T V+ T LKYL P+MV PPCF H TL GT+PA AI R
Sbjct: 234 LPFTLTLTKSPAPATFVMRTRLKYLKPLMVNLTPPCFTHGTLLKRTGTIPARYSAILRKI 413
Query: 496 GMLRSKCSRGGLHHPPLSADCWSLGGHRSVAVTTSVAALGLHPLGLSTQRTS*HPPQAAP 317
GM RSK RGGLH PPLS LGG + VAVT G H G T S PQ +P
Sbjct: 414 GMERSKWGRGGLHQPPLSLGRA*LGGQKLVAVTKIEGLPG*HHSGSFTHLISKQAPQLSP 593
Score = 73.5 bits (154), Expect(3) = 1e-076
Identities = 25/55 (45%), Positives = 36/55 (65%)
Frame = +3 / -1
Query: 690 WTEMKRNWGQVWQTGEDLTCESLTFRVMTSDHRKATSWHVLPADWKFGVTYQASK 854
W + RNWGQ WQ L +SL+FRV SD R +TSW+++P +W+FG T+ +
Sbjct: 223 WIPLSRNWGQNWQCSTVLVGQSLSFRVTGSDRRTSTSWNIVPPNWEFGQTFSGKQ 59
Score = 52.8 bits (109), Expect(3) = 1e-076
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = +3 / -2
Query: 216 DGSGTTAGACGYKDTRAQGYGVQTVAVSTVLFGDG 320
D SGT GACGY + +QGYGVQ+ A+ST LF G
Sbjct: 693 DASGTMGGACGYGNLYSQGYGVQSAALSTALFTAG 589
Score = 35.0 bits (70), Expect(3) = 3e-034
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -3 / +2
Query: 319 PSPNSTVLTATVCTPYPCARVSLYPHAPAVVPDPS 215
P+ N VL A TPYP YP AP +VP+ S
Sbjct: 590 PAVNRAVLNAAD*TPYPWLYRLPYPQAPPMVPEAS 694
Score = 27.6 bits (54), Expect(3) = 3e-034
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2 / +2
Query: 833 AELPVSGENVP*GGLAVVASHHPERQRLAGEVLPGLPHLPPVALHLRP 690
A+LP+ NVP G V + + E + L + LP L PV+ P
Sbjct: 80 AKLPIWRHNVPGCGGPAVTASYSEGEALPDQDGAALPILAPVSGQWNP 223
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 569,414,588
Number of Sequences: 355925
Number of extensions: 8940073
Number of successful extensions: 63691
Number of sequences better than 1.0e-020: 293
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 16497009760
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)