TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071743.2.1
(586 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO167423.1|CO167423 FLD1_68_H01.g1_A029 Root flooded Pin... 127 4e-029
gb|DR691451.1|DR691451 EST1081538 Normalized pine embryo li... 106 1e-022
gb|DT636570.1|DT636570 EST1151501 Normalized pine embryo li... 106 1e-022
gb|CF402055.1|CF402055 RTWW1_16_A10.g1_A015 Well-watered lo... 105 3e-022
gb|CF672703.1|CF672703 RTCNT1_73_H09.b1_A029 Root control P... 105 3e-022
gb|DR687398.1|DR687398 EST1077480 Normalized pine embryo li... 104 4e-022
gb|DR687613.1|DR687613 EST1077695 Normalized pine embryo li... 104 4e-022
gb|DT633915.1|DT633915 EST1148846 Normalized pine embryo li... 104 4e-022
gb|DT634194.1|DT634194 EST1149125 Normalized pine embryo li... 104 4e-022
gb|DT634300.1|DT634300 EST1149231 Normalized pine embryo li... 104 4e-022
gb|CO368510.1|CO368510 RTK1_41_C06.b1_A029 Roots minus pota... 104 6e-022
gb|AW437952.1|AW437952 ST78G04 Pine TriplEx shoot tip libra... 103 1e-021
gb|BQ699264.1|BQ699264 NXRV121_E06_F NXRV (Nsf Xylem Root w... 103 1e-021
gb|CF388364.1|CF388364 RTDR2_2_B10.g1_A021 Loblolly pine ro... 103 1e-021
gb|DR015097.1|DR015097 STRS1_1_B05.g1_A034 Shoot tip pitch ... 103 1e-021
>gb|CO167423.1|CO167423 FLD1_68_H01.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_68_H01_A029 5', mRNA sequence
Length = 857
Score = 127 bits (276), Expect = 4e-029
Identities = 53/72 (73%), Positives = 57/72 (79%)
Frame = +1 / +2
Query: 370 QLXXXXXXXXXATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYH 549
Q+ T+NK RLRWT ELHERF+EAVKKL G EKATPKGVLKLM VEGLTIYH
Sbjct: 170 QVASSSTSSGTGTSNKPRLRWTPELHERFIEAVKKLHGAEKATPKGVLKLMNVEGLTIYH 349
Query: 550 VKSHLQKYRLAK 585
VKSHLQKYR+AK
Sbjct: 350 VKSHLQKYRIAK 385
>gb|DR691451.1|DR691451 EST1081538 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD859 3' end, mRNA sequence
Length = 774
Score = 106 bits (229), Expect = 1e-022
Identities = 43/57 (75%), Positives = 51/57 (89%)
Frame = +1 / +2
Query: 415 KSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
K RLRWT +LH+RFVEAV +L G ++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 584 KQRLRWTTDLHDRFVEAVGQLGGADRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 754
>gb|DT636570.1|DT636570 EST1151501 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGT36 3' end, mRNA sequence
Length = 788
Score = 106 bits (229), Expect = 1e-022
Identities = 43/57 (75%), Positives = 51/57 (89%)
Frame = +1 / +1
Query: 415 KSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
K RLRWT +LH+RFVEAV +L G ++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 598 KQRLRWTTDLHDRFVEAVGQLGGADRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 768
>gb|CF402055.1|CF402055 RTWW1_16_A10.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_16_A10_A015 5', mRNA sequence
Length = 700
Score = 105 bits (226), Expect = 3e-022
Identities = 42/80 (52%), Positives = 58/80 (72%)
Frame = +1 / +3
Query: 346 NLGSPVKVQLXXXXXXXXXATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMK 525
N + + +Q+ T K RLRWT+ELH+RFV+AV +L GP+KATPK ++K+M
Sbjct: 132 NKKNNMSMQVSSGDAALVLTTDPKPRLRWTVELHDRFVDAVNQLGGPDKATPKTIMKVMG 311
Query: 526 VEGLTIYHVKSHLQKYRLAK 585
V+GLT+YH+KSHLQK+RL K
Sbjct: 312 VKGLTLYHLKSHLQKFRLGK 371
>gb|CF672703.1|CF672703 RTCNT1_73_H09.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_73_H09_A029 3', mRNA sequence
Length = 612
Score = 105 bits (226), Expect = 3e-022
Identities = 42/80 (52%), Positives = 58/80 (72%)
Frame = +1 / -2
Query: 346 NLGSPVKVQLXXXXXXXXXATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMK 525
N + + +Q+ T K RLRWT+ELH+RFV+AV +L GP+KATPK ++K+M
Sbjct: 569 NKKNNMSMQVSSGDAALVLTTDPKPRLRWTVELHDRFVDAVNQLGGPDKATPKTIMKVMG 390
Query: 526 VEGLTIYHVKSHLQKYRLAK 585
V+GLT+YH+KSHLQK+RL K
Sbjct: 389 VKGLTLYHLKSHLQKFRLGK 330
>gb|DR687398.1|DR687398 EST1077480 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABR96 3' end, mRNA sequence
Length = 694
Score = 104 bits (225), Expect = 4e-022
Identities = 44/61 (72%), Positives = 49/61 (80%)
Frame = +1 / +1
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLA 582
+T K RLRWT ELHERFV+AV KL GP+KATPK V M VEGLT+YH+KSHLQKYRL
Sbjct: 229 STDPKPRLRWTAELHERFVDAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSHLQKYRLG 408
Query: 583 K 585
K
Sbjct: 409 K 411
>gb|DR687613.1|DR687613 EST1077695 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABU53 3' end, mRNA sequence
Length = 739
Score = 104 bits (225), Expect = 4e-022
Identities = 44/61 (72%), Positives = 49/61 (80%)
Frame = +1 / +1
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLA 582
+T K RLRWT ELHERFV+AV KL GP+KATPK V M VEGLT+YH+KSHLQKYRL
Sbjct: 229 STDPKPRLRWTAELHERFVDAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSHLQKYRLG 408
Query: 583 K 585
K
Sbjct: 409 K 411
>gb|DT633915.1|DT633915 EST1148846 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG017 3' end, mRNA sequence
Length = 930
Score = 104 bits (225), Expect = 4e-022
Identities = 44/61 (72%), Positives = 49/61 (80%)
Frame = +1 / +3
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLA 582
+T K RLRWT ELHERFV+AV KL GP+KATPK V M VEGLT+YH+KSHLQKYRL
Sbjct: 237 STDPKPRLRWTAELHERFVDAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSHLQKYRLG 416
Query: 583 K 585
K
Sbjct: 417 K 419
>gb|DT634194.1|DT634194 EST1149125 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG331 3' end, mRNA sequence
Length = 921
Score = 104 bits (225), Expect = 4e-022
Identities = 44/61 (72%), Positives = 49/61 (80%)
Frame = +1 / +3
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLA 582
+T K RLRWT ELHERFV+AV KL GP+KATPK V M VEGLT+YH+KSHLQKYRL
Sbjct: 237 STDPKPRLRWTAELHERFVDAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSHLQKYRLG 416
Query: 583 K 585
K
Sbjct: 417 K 419
>gb|DT634300.1|DT634300 EST1149231 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG449 3' end, mRNA sequence
Length = 776
Score = 104 bits (225), Expect = 4e-022
Identities = 44/61 (72%), Positives = 49/61 (80%)
Frame = +1 / +3
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLA 582
+T K RLRWT ELHERFV+AV KL GP+KATPK V M VEGLT+YH+KSHLQKYRL
Sbjct: 237 STDPKPRLRWTAELHERFVDAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSHLQKYRLG 416
Query: 583 K 585
K
Sbjct: 417 K 419
>gb|CO368510.1|CO368510 RTK1_41_C06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_41_C06_A029 3', mRNA sequence
Length = 865
Score = 104 bits (224), Expect = 6e-022
Identities = 42/61 (68%), Positives = 52/61 (85%)
Frame = +1 / -2
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLA 582
+T K RL+WT ELHERFV+AV +L GP+KATPK VL++M V+GLT+YH+KSHLQKYRL
Sbjct: 687 STDPKPRLKWTPELHERFVDAVTQLGGPDKATPKSVLRVMGVKGLTLYHLKSHLQKYRLG 508
Query: 583 K 585
K
Sbjct: 507 K 505
>gb|AW437952.1|AW437952 ST78G04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST78G04, mRNA sequence
Length = 349
Score = 103 bits (222), Expect = 1e-021
Identities = 42/57 (73%), Positives = 49/57 (85%)
Frame = +1 / +1
Query: 415 KSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
K RLRWT ELHERFV+AV +L GP+KATPK VL+ M V+GLT+YH+KSHLQKYRL K
Sbjct: 103 KPRLRWTPELHERFVDAVSQLGGPDKATPKSVLREMGVKGLTLYHLKSHLQKYRLGK 273
>gb|BQ699264.1|BQ699264 NXRV121_E06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV121_E06 5' similar to Arabidopsis thaliana
sequence At2g01060 transfactor-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 557
Score = 103 bits (222), Expect = 1e-021
Identities = 41/55 (74%), Positives = 50/55 (90%)
Frame = +1 / +2
Query: 421 RLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
RLRWT +LH+RFV+AV +L GP++ATPKGVL++M V GLTIYHVKSHLQKYRL+K
Sbjct: 8 RLRWTPDLHQRFVDAVTELGGPDRATPKGVLRVMGVTGLTIYHVKSHLQKYRLSK 172
>gb|CF388364.1|CF388364 RTDR2_2_B10.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_2_B10_A021 5', mRNA
sequence
Length = 732
Score = 103 bits (222), Expect = 1e-021
Identities = 42/57 (73%), Positives = 49/57 (85%)
Frame = +1 / +2
Query: 415 KSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
K RLRWT ELHERFV+AV +L GP+KATPK VL+ M V+GLT+YH+KSHLQKYRL K
Sbjct: 212 KPRLRWTPELHERFVDAVSQLGGPDKATPKSVLREMGVKGLTLYHLKSHLQKYRLGK 382
>gb|DR015097.1|DR015097 STRS1_1_B05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_1_B05_A034 5', mRNA sequence
Length = 853
Score = 103 bits (222), Expect = 1e-021
Identities = 42/57 (73%), Positives = 49/57 (85%)
Frame = +1 / +2
Query: 415 KSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
K RLRWT ELHERFV+AV +L GP+KATPK VL+ M V+GLT+YH+KSHLQKYRL K
Sbjct: 77 KPRLRWTPELHERFVDAVSQLGGPDKATPKSVLREMGVKGLTLYHLKSHLQKYRLGK 247
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.314 0.132 0.386
Matrix: BLOSUM62
Number of Hits to DB: 291,503,614
Number of Sequences: 355925
Number of extensions: 3563019
Number of successful extensions: 32874
Number of sequences better than 1.0e-020: 17
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 7552202520
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 42 (22.0 bits)