TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3067516.2.1
         (605 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR682416.1|DR682416  EST1072491 Normalized pine embryo li...   116   2e-025
gb|DR022947.1|DR022947  STRS1_54_C01.g1_A034 Shoot tip pitch...   103   1e-021
gb|CF668912.1|CF668912  RTCNT1_39_A05.g1_A029 Root control P...   101   4e-021

>gb|DR682416.1|DR682416 EST1072491 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PWAA972, mRNA sequence
          Length = 794

 Score =  116 bits (247), Expect = 2e-025
 Identities = 46/82 (56%), Positives = 65/82 (79%)
 Frame = -2 / -1

                                                                       
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKL 422
           N SIE+RL  IHP+ V++MR+EVI LIP ++YADPRSKL   KDAFD++++++I+KVTKL
Sbjct: 542 NISIEQRLLQIHPEQVRRMRDEVIKLIPAIVYADPRSKLNNFKDAFDIAVQSMIDKVTKL 363

                                 
Query: 421 RRDIIAGQEDKDFIEENSWKYS 356
           R DII G+E +D+ E+   + S
Sbjct: 362 RSDIIEGREIEDYQEDEGSEQS 297



>gb|DR022947.1|DR022947 STRS1_54_C01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
           cDNA clone STRS1_54_C01_A034 5', mRNA sequence
          Length = 806

 Score =  103 bits (220), Expect = 1e-021
 Identities = 40/72 (55%), Positives = 58/72 (80%)
 Frame = -2 / +1

                                                                       
Query: 571 IHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKLRRDIIAGQED 392
           IHP+ V++MR+EVI LIP ++YADPRSKL   KDAFD++++++I+KVTKLR DII G+E 
Sbjct: 1   IHPEQVRRMRDEVIKLIPAIVYADPRSKLNNFKDAFDITVQSMIDKVTKLRSDIIEGREI 180

                       
Query: 391 KDFIEENSWKYS 356
           +D+ E+   + S
Sbjct: 181 EDYQEDEGSEQS 216



>gb|CF668912.1|CF668912 RTCNT1_39_A05.g1_A029 Root control Pinus taeda cDNA clone
           RTCNT1_39_A05_A029 5', mRNA sequence
          Length = 846

 Score =  101 bits (216), Expect = 4e-021
 Identities = 39/63 (61%), Positives = 53/63 (84%)
 Frame = -2 / +1

                                                                       
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKL 422
           N SIE+RL  IHP+ V++MR+EVI LIP ++YADPRSKL   KDAFD++++++I+KVTKL
Sbjct: 658 NISIEQRLLQIHPEQVRRMRDEVIKLIPAIVYADPRSKLNNFKDAFDITVQSMIDKVTKL 837

              
Query: 421 RRD 413
           R D
Sbjct: 838 RSD 846



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 308,112,161
Number of Sequences: 355925
Number of extensions: 3864172
Number of successful extensions: 38891
Number of sequences better than 1.0e-020: 3
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8141035500
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)