TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067267.2.1
(893 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO173742.1|CO173742 NDL1_38_G11.g1_A029 Needles control ... 214 1e-088
gb|DR688415.1|DR688415 EST1078499 Normalized pine embryo li... 194 5e-060
gb|CV035619.1|CV035619 RTNACL1_41_F09.b1_A029 Roots plus ad... 132 2e-057
gb|DR682439.1|DR682439 EST1072514 Normalized pine embryo li... 132 4e-056
gb|CF397297.1|CF397297 RTDS3_2_D11.g1_A022 Drought-stressed... 151 6e-056
gb|DR166062.1|DR166062 RTPHOS1_9_D01.b2_A029 Roots minus ph... 133 8e-055
gb|CF400261.1|CF400261 RTWW1_4_D05.b1_A015 Well-watered lob... 138 4e-053
gb|DR018091.1|DR018091 STRS1_20_A05.g1_A034 Shoot tip pitch... 115 2e-052
gb|CF390516.1|CF390516 RTDR2_19_H11.g1_A021 Loblolly pine r... 132 3e-052
gb|CO162154.1|CO162154 FLD1_33_B07.g1_A029 Root flooded Pin... 121 7e-052
gb|AL750699.1|AL750699 AL750699 RN Pinus pinaster cDNA clon... 121 7e-052
gb|CF387240.1|CF387240 RTDR1_11_H05.g1_A015 Loblolly pine r... 132 5e-051
gb|CO162750.1|CO162750 FLD1_37_F12.b1_A029 Root flooded Pin... 124 4e-050
gb|CO163524.1|CO163524 FLD1_42_E02.b1_A029 Root flooded Pin... 124 6e-050
gb|DR052326.1|DR052326 RTCA1_3_H07.g1_A029 Roots minus calc... 120 7e-049
gb|AA739854.1|AA739854 619 PtIFG2 Pinus taeda cDNA clone 90... 105 4e-047
gb|CF400358.1|CF400358 RTWW1_4_D05.g1_A015 Well-watered lob... 90 7e-043
gb|CO173695.1|CO173695 NDL1_38_G11.b1_A029 Needles control ... 84 1e-042
gb|CF663657.1|CF663657 RTCNT1_4_G11.b1_A029 Root control Pi... 132 3e-042
gb|CF399370.1|CF399370 RTDS3_28_G12.b1_A022 Drought-stresse... 132 3e-042
gb|DR167388.1|DR167388 RTPHOS1_18_B05.g1_A029 Roots minus p... 102 3e-042
gb|CO162833.1|CO162833 FLD1_37_F12.g1_A029 Root flooded Pin... 124 4e-042
gb|CO158046.1|CO158046 FLD1_4_D04.b1_A029 Root flooded Pinu... 93 7e-041
gb|AL751019.1|AL751019 AL751019 RS Pinus pinaster cDNA clon... 132 7e-038
gb|DR692874.1|DR692874 EST1082962 Normalized pine embryo li... 129 2e-037
gb|CO200907.1|CO200907 RTCNT2_2_H02.b1_A029 Root control 2 ... 111 3e-037
gb|DR013601.1|DR013601 HEAT1_20_G06.b1_A029 Root at 37 C fo... 84 7e-035
gb|DT633037.1|DT633037 EST1147968 Normalized pine embryo li... 93 2e-034
gb|DR022259.1|DR022259 STRS1_49_H04.g1_A034 Shoot tip pitch... 77 2e-034
gb|DR685649.1|DR685649 EST1075726 Normalized pine embryo li... 93 2e-034
gb|DR058914.1|DR058914 RTNIT1_14_D07.g1_A029 Roots minus ni... 111 2e-034
gb|CF665105.1|CF665105 RTCNT1_14_A11.b1_A029 Root control P... 93 8e-034
gb|BG318079.1|BG318079 NXPV_010_C04_F NXPV (Nsf Xylem Plani... 127 1e-033
gb|BG318838.1|BG318838 NXPV_020_E07_F NXPV (Nsf Xylem Plani... 126 3e-033
gb|BQ695881.1|BQ695881 NXPV_033_G02_F NXPV (Nsf Xylem Plani... 127 6e-033
gb|DR057719.1|DR057719 RTNIT1_7_A04.g1_A029 Roots minus nit... 105 7e-033
gb|CO166204.1|CO166204 FLD1_60_D04.b1_A029 Root flooded Pin... 105 7e-033
gb|DR015665.1|DR015665 STRS1_4_H05.g1_A034 Shoot tip pitch ... 105 7e-033
gb|CF672272.1|CF672272 RTCNT1_62_B04.g1_A029 Root control P... 105 7e-033
gb|CO173994.1|CO173994 NDL1_41_B04.b1_A029 Needles control ... 105 7e-033
gb|DN626613.1|DN626613 EST977429 Subtracted pine embryo lib... 105 2e-032
gb|DR023326.1|DR023326 STRS1_56_G11.g1_A034 Shoot tip pitch... 105 2e-032
gb|CO170358.1|CO170358 NDL1_13_C10.g1_A029 Needles control ... 105 2e-032
gb|CF473795.1|CF473795 RTWW2_4_A12.g1_A021 Well-watered lob... 105 2e-032
gb|DN614642.1|DN614642 EST967692 Subtracted pine embryo lib... 103 5e-032
gb|CO362049.1|CO362049 NDL2_8_G08.g1_A029 Needles control 2... 105 8e-032
gb|CO197549.1|CO197549 GEO1_7_G02.b1_A029 Root gravitropism... 121 1e-031
gb|DN630131.1|DN630131 EST980947 Subtracted pine embryo lib... 105 2e-031
gb|DN609158.1|DN609158 EST962208 Subtracted pine embryo lib... 119 6e-031
gb|DT627615.1|DT627615 EST1156364 Subtracted pine embryo li... 119 6e-031
gb|BE643751.1|BE643751 NXCI_044_F11_F NXCI (Nsf Xylem Compr... 86 8e-031
gb|DN633647.1|DN633647 EST984463 Subtracted pine embryo lib... 105 1e-030
gb|CO361978.1|CO361978 NDL2_8_G08.b1_A029 Needles control 2... 105 1e-030
gb|DR096317.1|DR096317 STRR1_27_E12.b1_A033 Stem Response R... 54 9e-030
gb|BQ107116.1|BQ107116 NXLV087_B07_F NXLV (Nsf Xylem Late w... 64 1e-029
gb|DT634813.1|DT634813 EST1149744 Normalized pine embryo li... 96 4e-029
gb|CF394929.1|CF394929 RTDS2_8_E03.g1_A021 Drought-stressed... 93 4e-029
gb|DR742962.1|DR742962 RTCU1_8_D04.g2_A029 Roots plus added... 116 8e-028
gb|DR165517.1|DR165517 RTPHOS1_5_C09.g1_A029 Roots minus ph... 77 9e-028
gb|DT638034.1|DT638034 EST1152965 Normalized pine embryo li... 78 9e-028
gb|DR693135.1|DR693135 EST1083223 Normalized pine embryo li... 78 1e-027
gb|CV134947.1|CV134947 EST846156 Sequencing ESTs from loblo... 123 2e-027
gb|DT625881.1|DT625881 EST1157805 Sequencing ESTs from lobl... 123 2e-027
gb|BF777929.1|BF777929 NXSI_079_A03_F NXSI (Nsf Xylem Side ... 114 2e-027
gb|DR112539.1|DR112539 RTS1_28_H12.g1_A029 Roots minus sulf... 73 3e-027
gb|AW981526.1|AW981526 PC13F05 Pine TriplEx pollen cone lib... 121 7e-027
gb|CF474613.1|CF474613 RTWW2_9_E07.g1_A021 Well-watered lob... 105 8e-027
gb|CF398179.1|CF398179 RTDS3_21_C06.g1_A022 Drought-stresse... 105 8e-027
gb|DN628190.1|DN628190 EST979006 Subtracted pine embryo lib... 104 3e-026
gb|DR690061.1|DR690061 EST1080150 Normalized pine embryo li... 116 2e-025
gb|BQ697789.1|BQ697789 NXPV_052_H02_F NXPV (Nsf Xylem Plani... 114 8e-025
gb|BX678339.1|BX678339 BX678339 RN Pinus pinaster cDNA clon... 80 9e-025
gb|CX714177.1|CX714177 RTPQ1_18_F08.g1_A032 Roots treated w... 108 9e-025
gb|DR070299.1|DR070299 RTDK1_12_A11.g1_A029 Roots, dark Pin... 99 1e-024
gb|CV032591.1|CV032591 RTNACL1_17_D12.b1_A029 Roots plus ad... 99 1e-024
gb|DR685280.1|DR685280 EST1075357 Normalized pine embryo li... 99 1e-024
gb|DT629085.1|DT629085 EST1155655 Subtracted pine embryo li... 99 1e-024
gb|CO175574.1|CO175574 NDL1_55_D06.g1_A029 Needles control ... 113 1e-024
gb|DR013680.1|DR013680 HEAT1_20_G06.g1_A029 Root at 37 C fo... 113 1e-024
gb|CO165706.1|CO165706 FLD1_56_A09.g1_A029 Root flooded Pin... 111 5e-024
gb|DR072264.1|DR072264 RTDK1_25_D03.b1_A029 Roots, dark Pin... 111 5e-024
gb|CF399444.1|CF399444 RTDS3_28_G12.g1_A022 Drought-stresse... 93 1e-023
gb|CX651075.1|CX651075 COLD1_50_A09.b1_A029 Root cold Pinus... 73 3e-023
gb|DT636091.1|DT636091 EST1151022 Normalized pine embryo li... 109 3e-023
gb|DR048684.1|DR048684 RTBOR1_10_B09.g1_A029 Roots plus add... 105 5e-023
gb|DR177810.1|DR177810 RTMNUT1_7_C01.g1_A029 Roots minus mi... 105 5e-023
gb|BX682811.1|BX682811 BX682811 Pinus pinaster differenciat... 105 5e-023
gb|CF392220.1|CF392220 RTDR3_8_H06.g1_A022 Loblolly pine ro... 105 5e-023
gb|CX645309.1|CX645309 COLD1_1_H01.g1_A029 Root cold Pinus ... 106 1e-022
gb|CF394820.1|CF394820 RTDS2_7_F06.g1_A021 Drought-stressed... 106 2e-022
gb|CO363588.1|CO363588 RTK1_10_D08.g1_A029 Roots minus pota... 106 2e-022
gb|CO366387.1|CO366387 RTK1_27_C06.g1_A029 Roots minus pota... 106 2e-022
gb|CX650276.1|CX650276 COLD1_44_D04.g1_A029 Root cold Pinus... 106 2e-022
gb|DR690485.1|DR690485 EST1080571 Normalized pine embryo li... 106 2e-022
gb|DR690763.1|DR690763 EST1080849 Normalized pine embryo li... 106 2e-022
gb|AF220199.1|AF220199 Pinus taeda 26S proteasome regulator... 106 2e-022
gb|BF777732.1|BF777732 NXSI_074_G11_F NXSI (Nsf Xylem Side ... 105 2e-022
gb|DR745486.1|DR745486 RTCU1_29_H10.g1_A029 Roots plus adde... 106 2e-022
gb|AW784094.1|AW784094 NXNV_117_G01_F Nsf Xylem Normal wood... 105 3e-022
gb|CF398817.1|CF398817 RTDS3_16_H03.g1_A022 Drought-stresse... 105 3e-022
gb|DR059108.1|DR059108 RTNIT1_15_F01.g1_A029 Roots minus ni... 105 3e-022
gb|DR746295.1|DR746295 RTCU1_36_B08.b1_A029 Roots plus adde... 105 3e-022
gb|DR052036.1|DR052036 RTCA1_2_B06.b1_A029 Roots minus calc... 100 4e-022
gb|DN465363.1|DN465363 EST961162 Sequencing ESTs from loblo... 100 4e-022
gb|DR092371.1|DR092371 STRR1_1_A12.b1_A033 Stem Response Re... 100 4e-022
gb|DR015815.1|DR015815 STRS1_5_G03.g1_A034 Shoot tip pitch ... 100 4e-022
gb|CO164041.1|CO164041 FLD1_45_A06.g1_A029 Root flooded Pin... 100 4e-022
gb|CX652505.1|CX652505 COLD1_59_B11.g1_A029 Root cold Pinus... 100 4e-022
gb|DR092451.1|DR092451 STRR1_1_A12.g1_A033 Stem Response Re... 100 4e-022
gb|CO170275.1|CO170275 NDL1_12_H04.g1_A029 Needles control ... 100 4e-022
gb|DR047454.1|DR047454 RTBOR1_1_D11.b1_A029 Roots plus adde... 100 4e-022
gb|CO198873.1|CO198873 GEO1_17_E06.b1_A029 Root gravitropis... 100 4e-022
gb|DR168297.1|DR168297 RTPHOS1_24_C02.g1_A029 Roots minus p... 100 4e-022
gb|CO171668.1|CO171668 NDL1_23_D04.g1_A029 Needles control ... 100 4e-022
gb|DR385900.1|DR385900 RTHG1_11_C01.g1_A029 Roots plus adde... 101 6e-022
gb|BQ702237.1|BQ702237 NXSI_126_D12_F NXSI (Nsf Xylem Side ... 100 6e-022
gb|BX677806.1|BX677806 BX677806 RN Pinus pinaster cDNA clon... 68 8e-022
gb|DR687941.1|DR687941 EST1078024 Normalized pine embryo li... 104 8e-022
gb|DT625689.1|DT625689 EST1157613 Sequencing ESTs from lobl... 100 2e-021
gb|CO160697.1|CO160697 FLD1_23_A04.g1_A029 Root flooded Pin... 100 2e-021
gb|CO159911.1|CO159911 FLD1_16_G11.g1_A029 Root flooded Pin... 75 2e-021
gb|CX645310.1|CX645310 COLD1_1_H02.g1_A029 Root cold Pinus ... 102 2e-021
gb|BQ701170.1|BQ701170 NXSI_023_D05_F NXSI (Nsf Xylem Side ... 100 3e-021
gb|BG319239.1|BG319239 NXPV_019_E01_F NXPV (Nsf Xylem Plani... 102 3e-021
gb|AI813002.1|AI813002 2F11 Pine Lambda Zap Xylem library P... 102 4e-021
gb|DR163240.1|DR163240 RTFE1_41_F05.g1_A029 Roots minus iro... 86 4e-021
gb|DT626481.1|DT626481 EST1158405 Sequencing ESTs from lobl... 101 6e-021
gb|BX254966.1|BX254966 BX254966 Pinus pinaster differenciat... 72 7e-021
gb|DR097230.1|DR097230 STRR1_33_H08.b1_A033 Stem Response R... 95 1e-020
>gb|CO173742.1|CO173742 NDL1_38_G11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_38_G11_A029 5', mRNA sequence
Length = 548
Score = 214 bits (461), Expect(4) = 1e-088
Identities = 91/95 (95%), Positives = 92/95 (96%)
Frame = +3 / +2
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLLSPWKGILLFG PGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFE+
Sbjct: 8 GLLSPWKGILLFGFPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEV 187
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 296
ARHHAPSTIFLDEIDAIIS RGE RSEHEASRRLK
Sbjct: 188 ARHHAPSTIFLDEIDAIISHRGEGRSEHEASRRLK 292
Score = 163 bits (351), Expect(3) = 2e-050
Identities = 73/97 (75%), Positives = 79/97 (81%)
Frame = -2 / -3
Query: 301 SVFNRRLASCSLRASPR*LMIASISSRKIVDGA*CLAXXXXXXXXXSESPRHLLTIDEAE 122
S F R LASCSLR SPR*L+IASISSRKIVDGA*CLA SESPRHLLT+D+A+
Sbjct: 297 SFFKRLLASCSLRPSPR*LIIASISSRKIVDGA*CLATSKSTFTSFSESPRHLLTMDDAD 118
Query: 121 ILKKVVLHSVATALASIVFPVPGGPNSNMPFQGDNRP 11
+LK VVLHSVATALASIVFPVPG PN +PFQGD RP
Sbjct: 117 MLKNVVLHSVATALASIVFPVPGKPNRRIPFQGDRRP 7
Score = 98.7 bits (209), Expect(4) = 1e-088
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = +3 / +3
Query: 339 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPG 488
+LVFVLAATNLPWELDAAMLRRLEKRILVPLPE +AR AMFE+LLP G
Sbjct: 339 DLVFVLAATNLPWELDAAMLRRLEKRILVPLPEREARQAMFEDLLPSQTG 488
Score = 96.8 bits (205), Expect(2) = 8e-025
Identities = 43/83 (51%), Positives = 53/83 (63%)
Frame = +2 / +1
Query: 11 RSIITLERHITVWSTWNRKDNAS*SCGY*VQNNFFQYFCLVDCKQVAR*LGETSESVIRT 190
R I LER ++W +WN KDNA GY*VQNN Q+ C++ C QVAR* +T +S
Sbjct: 7 RPSIALERDSSIWFSWNWKDNACQGSGY*VQNNILQHICIIHC*QVAR*FRKTCKSTF*G 186
Query: 191 CKASCTIYYFP**D*CYH*STW* 259
CK SCTI *+*CY+*S W*
Sbjct: 187 CKTSCTINNLSR*N*CYY*SPW* 255
Score = 49.2 bits (101), Expect(3) = 2e-050
Identities = 26/53 (49%), Positives = 29/53 (54%)
Frame = -2 / -2
Query: 496 SIVPGVYGRSSSNIACLASGSGNGTXXXXXXXXXXXXSNSHGKFVAARTKTSS 338
S P G+ SSN+A AS SG GT S+SHGK VAARTKT S
Sbjct: 496 SSAPVCEGKRSSNMA*RASRSGRGTRIRFSRRRSMAASSSHGKLVAARTKTRS 338
Score = 43.2 bits (88), Expect(4) = 1e-088
Identities = 15/19 (78%), Positives = 19/19 (100%)
Frame = +3 / +3
Query: 495 EIPYDVLVEKTEGYSGSDI 551
E+PYD++VE+TEGYSGSDI
Sbjct: 492 ELPYDLMVERTEGYSGSDI 548
Score = 37.3 bits (75), Expect(2) = 8e-025
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2 / +2
Query: 347 FCSSSNKFTMGVGCSNAASAGEAYSCSIARAGC*TCYV*RAPAIYTW 487
FC + F +G GC +A+++ +AYSC+ + A + +V*R W
Sbjct: 347 FCPGGD*FAVGAGCCHASTS*KAYSCASS*A*STSSHV*RPLTFANW 487
Score = 29.5 bits (58), Expect(4) = 1e-088
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3 / +1
Query: 294 KTELLIQMDGLTKTDELVFV 353
+TELLIQMDGL +T+ F+
Sbjct: 292 ETELLIQMDGLMQTNXTSFL 351
Score = 25.4 bits (49), Expect(3) = 2e-050
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -2 / -2
Query: 550 ISEPEYPSVFSTRTS*GIS 494
ISEPE PSV ST S G S
Sbjct: 547 ISEPE*PSVLSTIRSYGSS 491
>gb|DR688415.1|DR688415 EST1078499 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC607 3' end, mRNA sequence
Length = 913
Score = 194 bits (418), Expect(3) = 5e-060
Identities = 81/83 (97%), Positives = 82/83 (98%)
Frame = +3 / +2
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFE+
Sbjct: 554 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEV 733
Query: 192 ARHHAPSTIFLDEIDAIISQRGE 260
ARHHAPSTIFLDEIDAIIS RGE
Sbjct: 734 ARHHAPSTIFLDEIDAIISHRGE 802
Score = 146 bits (314), Expect(3) = 1e-040
Identities = 64/83 (77%), Positives = 70/83 (84%)
Frame = -2 / -2
Query: 259 SPR*LMIASISSRKIVDGA*CLAXXXXXXXXXSESPRHLLTIDEAEILKKVVLHSVATAL 80
SPR*L+IASISSRKIVDGA*CLA SESPRHLLT+D+A++LK VVLHSVATAL
Sbjct: 801 SPR*LIIASISSRKIVDGA*CLATSKSTFTSFSESPRHLLTMDDADMLKNVVLHSVATAL 622
Query: 79 ASIVFPVPGGPNSNMPFQGDNRP 11
ASIVFPVPGGPN +PFQGD RP
Sbjct: 621 ASIVFPVPGGPNRRIPFQGDRRP 553
Score = 42.8 bits (87), Expect(3) = 5e-060
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +3 / +3
Query: 258 EARSEHEASRRLKTELLIQM 317
+ RSEHEASRRLKTELLIQM
Sbjct: 801 KGRSEHEASRRLKTELLIQM 860
Score = 33.6 bits (67), Expect(3) = 5e-060
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +3 / +1
Query: 306 LIQMDGLTKTDELVFVLAATN 368
L + DGL +T++LVFVLAATN
Sbjct: 850 LSRWDGLMQTNDLVFVLAATN 912
Score = 33.1 bits (66), Expect(3) = 1e-040
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = -2 / -1
Query: 328 VNPSICINSSVFNRRLASCSLR 263
+N I I+SSVF R LASCSLR
Sbjct: 871 LNHPIWISSSVFKRLLASCSLR 806
Score = 25.8 bits (50), Expect(3) = 1e-040
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2 / -3
Query: 364 VAARTKTSSSVLVNPS 317
VAARTKT S V + PS
Sbjct: 908 VAARTKTRSFVCIKPS 861
>gb|CV035619.1|CV035619 RTNACL1_41_F09.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_41_F09_A029 3', mRNA sequence
Length = 855
Score = 132 bits (282), Expect(3) = 2e-057
Identities = 53/92 (57%), Positives = 68/92 (73%)
Frame = +3 / -3
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
G PWK LL+GPPGTGK+ LAKAVATE +TFF+IS+S +VSKW G+SEKLV LF++
Sbjct: 619 GRRKPWKAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQM 440
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
AR AP+ IF+DEID++ RGE+ + R
Sbjct: 439 ARDSAPAIIFIDEIDSLCGTRGESNESEASRR 344
Score = 93.2 bits (197), Expect(3) = 2e-057
Identities = 41/73 (56%), Positives = 52/73 (71%)
Frame = +3 / -3
Query: 267 SEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDA 446
+E EASRR+KTE+L+QM G+ D+ V VLAATN P+ LD A+ RR +KRI +PLPE A
Sbjct: 367 NESEASRRIKTEVLVQMQGVGNNDDKVLVLAATNTPYALDQAIRRRFDKRIYIPLPEVKA 188
Query: 447 RHAMFEELLPYTP 485
R MF+ L TP
Sbjct: 187 RQHMFKVHLGDTP 149
Score = 63.4 bits (132), Expect(4) = 9e-022
Identities = 39/83 (46%), Positives = 40/83 (48%)
Frame = -2 / +3
Query: 259 SPR*LMIASISSRKIVDGA*CLAXXXXXXXXXSESPRHLLTIDEAEILKKVVLHSVATAL 80
SPR SISS I+ GA A S SP H T E EILK V SVATA
Sbjct: 372 SPRVPHKESISSMNIIAGAESRAI*NKFATSFSLSPIHFETRSEEEILKNVESASVATAF 551
Query: 79 ASIVFPVPGGPNSNMPFQGDNRP 11
A FPVPGGP FQG P
Sbjct: 552 AKYDFPVPGGPYKRKAFQGFRLP 620
Score = 48.3 bits (99), Expect(4) = 9e-022
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = -2 / +3
Query: 382 NSHGKFVAARTKTSSSVLVNPSICINSSVFNRRLASCSL 266
N++G VAART+T SS+ P IC +SVF RR AS SL
Sbjct: 252 NAYGVLVAARTRTLSSLFPTPCICTRTSVFIRREASLSL 368
Score = 36.8 bits (74), Expect(3) = 2e-057
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3 / -3
Query: 495 EIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVMAVLEGRK 620
E ++ L +TEG+SGSD+ + K+ +P+R+ + RK
Sbjct: 136 ESDFEELACRTEGFSGSDVAVCVKDVLFEPVRKTQDAMFFRK 11
Score = 23.5 bits (45), Expect(4) = 9e-022
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2 / +3
Query: 619 FLPSRTAITRLRGCIAASLHTRRISEPEYPSVFSTRTS*GISI 491
FL + + G + SL S+PE PSV +S +S+
Sbjct: 12 FLKNMAS*VLRTGSKSTSLTQTATSDPEKPSVLHASSSKSLSV 140
Score = 23.1 bits (44), Expect(4) = 9e-022
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2 / +3
Query: 484 GVYGRSSSNIACLASGSGNG 425
GV + + NI CLA SG+G
Sbjct: 150 GVSPKWTLNICCLALTSGSG 209
>gb|DR682439.1|DR682439 EST1072514 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA985 3' end, mRNA sequence
Length = 744
Score = 132 bits (283), Expect(3) = 4e-056
Identities = 53/92 (57%), Positives = 68/92 (73%)
Frame = +3 / +3
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
G PW+ LL+GPPGTGK+ LAKAVATE +TF++IS+S +VSKW G+SEKLV LF++
Sbjct: 168 GKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVSNLFQM 347
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
AR APS IF+DEID++ QRGE + R
Sbjct: 348 ARDCAPSIIFIDEIDSLCGQRGEGNESEASRR 443
Score = 93.6 bits (198), Expect(3) = 4e-056
Identities = 41/76 (53%), Positives = 53/76 (69%)
Frame = +3 / +3
Query: 267 SEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDA 446
+E EASRR+KTELL+QM G+ D+ V VLAATN P+ LD A+ RR +KRI +PLP+ A
Sbjct: 420 NESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKA 599
Query: 447 RHAMFEELLPYTPGTM 494
R MF+ L TP +
Sbjct: 600 RQHMFKVHLGDTPNNL 647
Score = 31.3 bits (62), Expect(3) = 4e-056
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3 / +3
Query: 504 YDVLVEKTEGYSGSDIRLVCKEAAMQPL 587
++ L +T+G+SGSDI + K+ +P+
Sbjct: 660 FEDLARRTDGFSGSDISVCVKDVLFEPV 743
>gb|CF397297.1|CF397297 RTDS3_2_D11.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_2_D11_A022 5', mRNA sequence
Length = 799
Score = 151 bits (325), Expect(2) = 6e-056
Identities = 56/92 (60%), Positives = 77/92 (83%)
Frame = +3 / +1
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
G+ PWKG+L+FGPPGTGKT+LAKAVATEC TTFFN+S++++ SKWRG+SE++V+ LF+L
Sbjct: 205 GIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDL 384
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
AR +APSTIF+DEID++ + RG + + R
Sbjct: 385 ARAYAPSTIFIDEIDSLCNARGASGEHESSRR 480
Score = 86.8 bits (183), Expect(2) = 6e-056
Identities = 35/80 (43%), Positives = 52/80 (65%)
Frame = +3 / +1
Query: 339 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLV 518
++V VLAATN PW++D A+ RRLEKRI +PLP ++R + L ++ D +
Sbjct: 550 KIVMVLAATNFPWDIDEALRRRLEKRIYIPLPAFESRKELIRINLKGVEVAPDVDIDEVA 729
Query: 519 EKTEGYSGSDIRLVCKEAAM 578
+TEGYSG D+ VC++A+M
Sbjct: 730 RRTEGYSGDDLTNVCRDASM 789
>gb|DR166062.1|DR166062 RTPHOS1_9_D01.b2_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_9_D01_A029 3', mRNA sequence
Length = 691
Score = 133 bits (285), Expect(3) = 8e-055
Identities = 53/96 (55%), Positives = 71/96 (73%)
Frame = +3 / -2
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
G PW+ LL+GPPGTGK+ LAKAVATE +TF++IS+S +VSKW G+SEKLV LF++
Sbjct: 591 GKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVSNLFQM 412
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 299
AR APS IF+DEID++ QRGE ++ + +T
Sbjct: 411 ARDCAPSIIFIDEIDSLCGQRGEGNESEASTNKDRT 304
Score = 85.4 bits (180), Expect(3) = 8e-055
Identities = 37/70 (52%), Positives = 48/70 (68%)
Frame = +3 / -3
Query: 285 RRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFE 464
RR+KTELL+QM G+ D+ V VLAATN P+ LD A+ RR +KRI +PLP+ AR MF+
Sbjct: 323 RRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFK 144
Query: 465 ELLPYTPGTM 494
L TP +
Sbjct: 143 VHLGDTPNNL 114
Score = 34.5 bits (69), Expect(3) = 8e-055
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +3 / -3
Query: 504 YDVLVEKTEGYSGSDIRLVCKEAAMQPLRR 593
++ L +T+G+SGSDI + K+ +P+R+
Sbjct: 101 FEDLARRTDGFSGSDISVCVKDVLFEPVRK 12
>gb|CF400261.1|CF400261 RTWW1_4_D05.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_4_D05_A015 3', mRNA sequence
Length = 656
Score = 138 bits (296), Expect(2) = 4e-053
Identities = 53/87 (60%), Positives = 70/87 (80%)
Frame = +3 / -2
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
G +PW+GILL+GPPGTGK+ LAKAVATE K TFF++S+S +VSKW+GDSE+LV+ LFE+
Sbjct: 478 GKRTPWRGILLYGPPGTGKSFLAKAVATEAKGTFFSVSSSDLVSKWQGDSERLVRQLFEM 299
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSE 272
AR P+ IF+DE+D++ R E SE
Sbjct: 298 ARESKPAIIFIDEVDSLAGTRNEGESE 218
Score = 90.4 bits (191), Expect(2) = 4e-053
Identities = 40/72 (55%), Positives = 49/72 (68%)
Frame = +3 / -2
Query: 270 EHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDAR 449
E E SRR+KTE L+QM+G+ D V VL ATN+PW LD A+ RR EKRI +PLP +AR
Sbjct: 226 ESEGSRRIKTEFLVQMNGVGHDDTGVLVLGATNIPWALDNAIKRRFEKRIYIPLPGLEAR 47
Query: 450 HAMFEELLPYTP 485
MFE + TP
Sbjct: 46 KRMFELHVGNTP 11
>gb|DR018091.1|DR018091 STRS1_20_A05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_20_A05_A034 5', mRNA sequence
Length = 716
Score = 115 bits (246), Expect(3) = 2e-052
Identities = 47/80 (58%), Positives = 61/80 (76%)
Frame = +3 / +3
Query: 48 GPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLD 227
GPPGTGK+ LAKAVATE +TFF+IS+S +VSKW G+SEKLV LF++AR AP+ IF+D
Sbjct: 3 GPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQMARDSAPAIIFID 182
Query: 228 EIDAIISQRGEARSEHEASR 287
EID++ RGE+ + R
Sbjct: 183 EIDSLCGTRGESNESEASRR 242
Score = 93.2 bits (197), Expect(3) = 2e-052
Identities = 41/73 (56%), Positives = 52/73 (71%)
Frame = +3 / +3
Query: 267 SEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDA 446
+E EASRR+KTE+L+QM G+ D+ V VLAATN P+ LD A+ RR +KRI +PLPE A
Sbjct: 219 NESEASRRIKTEVLVQMQGVGNNDDKVLVLAATNTPYALDQAIRRRFDKRIYIPLPEVKA 398
Query: 447 RHAMFEELLPYTP 485
R MF+ L TP
Sbjct: 399 RQHMFKVHLGDTP 437
Score = 36.8 bits (74), Expect(3) = 2e-052
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3 / +3
Query: 495 EIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVMAVLEGRK 620
E ++ L +TEG+SGSD+ + K+ +P+R+ + RK
Sbjct: 450 ESDFEELACRTEGFSGSDVAVCVKDVLFEPVRKTQDAMFFRK 575
>gb|CF390516.1|CF390516 RTDR2_19_H11.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_19_H11_A021 5', mRNA
sequence
Length = 731
Score = 132 bits (283), Expect(2) = 3e-052
Identities = 53/92 (57%), Positives = 68/92 (73%)
Frame = +3 / +2
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
G PW+ LL+GPPGTGK+ LAKAVATE +TF++IS+S +VSKW G+SEKLV LF++
Sbjct: 248 GKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVSNLFQM 427
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
AR APS IF+DEID++ QRGE + R
Sbjct: 428 ARDCAPSIIFIDEIDSLCGQRGEGNESEASRR 523
Score = 93.6 bits (198), Expect(2) = 3e-052
Identities = 41/76 (53%), Positives = 53/76 (69%)
Frame = +3 / +2
Query: 267 SEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDA 446
+E EASRR+KTELL+QM G+ D+ V VLAATN P+ LD A+ RR +KRI +PLP+ A
Sbjct: 500 NESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKA 679
Query: 447 RHAMFEELLPYTPGTM 494
R MF+ L TP +
Sbjct: 680 RQHMFKVHLGDTPNNL 727
>gb|CO162154.1|CO162154 FLD1_33_B07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_33_B07_A029 5', mRNA sequence
Length = 799
Score = 121 bits (259), Expect(3) = 7e-052
Identities = 51/80 (63%), Positives = 60/80 (75%)
Frame = +3 / +1
Query: 15 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 194
L P KGILLFGPPGTGKTMLAKAVATE F NIS SSI SKW G+ EK VK +F LA
Sbjct: 25 LTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA 204
Query: 195 RHHAPSTIFLDEIDAIISQR 254
+PS IF+DE+D+++ +R
Sbjct: 205 SKISPSVIFVDEVDSMLGRR 264
Score = 86.3 bits (182), Expect(3) = 7e-052
Identities = 37/91 (40%), Positives = 57/91 (62%)
Frame = +3 / +1
Query: 327 TKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPY 506
TK E V VLAATN P++LD A++RRL +R++V LP+ R + + +L ++
Sbjct: 337 TKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDTTNRAKILKVILAKEELAPDVDL 516
Query: 507 DVLVEKTEGYSGSDIRLVCKEAAMQPLRRVM 599
D + TEGYSGSD++ +C AA P+R ++
Sbjct: 517 DAIASMTEGYSGSDLKNLCVTAAYCPIREIL 609
Score = 35.4 bits (71), Expect(3) = 7e-052
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / +1
Query: 252 RGEARSEHEASRRLKTELLIQMDGLTKTDE 341
R E+ EHEA R++K E ++ DGL D+
Sbjct: 259 RRESPGEHEAMRKMKNEFMVNWDGLRTKDK 348
>gb|AL750699.1|AL750699 AL750699 RN Pinus pinaster cDNA clone RN06C12 similar to ATPASE,
mRNA sequence
Length = 674
Score = 121 bits (259), Expect(3) = 7e-052
Identities = 51/80 (63%), Positives = 60/80 (75%)
Frame = +3 / -2
Query: 15 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 194
L P KGILLFGPPGTGKTMLAKAVATE F NIS SSI SKW G+ EK VK +F LA
Sbjct: 610 LTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA 431
Query: 195 RHHAPSTIFLDEIDAIISQR 254
+PS IF+DE+D+++ +R
Sbjct: 430 SKISPSVIFVDEVDSMLGRR 371
Score = 86.3 bits (182), Expect(3) = 7e-052
Identities = 37/91 (40%), Positives = 57/91 (62%)
Frame = +3 / -2
Query: 327 TKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPY 506
TK E V VLAATN P++LD A++RRL +R++V LP+ R + + +L ++
Sbjct: 298 TKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDTTNRAKILKVILAKEELAPDVDL 119
Query: 507 DVLVEKTEGYSGSDIRLVCKEAAMQPLRRVM 599
D + TEGYSGSD++ +C AA P+R ++
Sbjct: 118 DAIASMTEGYSGSDLKNLCVTAAYCPIREIL 26
Score = 35.4 bits (71), Expect(3) = 7e-052
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / -2
Query: 252 RGEARSEHEASRRLKTELLIQMDGLTKTDE 341
R E+ EHEA R++K E ++ DGL D+
Sbjct: 376 RRESPGEHEAMRKMKNEFMVNWDGLRTKDK 287
>gb|CF387240.1|CF387240 RTDR1_11_H05.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_11_H05_A015 5', mRNA
sequence
Length = 687
Score = 132 bits (283), Expect(2) = 5e-051
Identities = 53/92 (57%), Positives = 68/92 (73%)
Frame = +3 / +1
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
G PW+ LL+GPPGTGK+ LAKAVATE +TF++IS+S +VSKW G+SEKLV LF++
Sbjct: 241 GKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVSNLFQM 420
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
AR APS IF+DEID++ QRGE + R
Sbjct: 421 ARDCAPSIIFIDEIDSLCGQRGEGNESEASRR 516
Score = 89.5 bits (189), Expect(2) = 5e-051
Identities = 38/65 (58%), Positives = 48/65 (73%)
Frame = +3 / +1
Query: 267 SEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDA 446
+E EASRR+KTELL+QM G+ D+ V VLAATN P+ LD A+ RR +KRI +PLP+ A
Sbjct: 493 NESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKA 672
Query: 447 RHAMF 461
R MF
Sbjct: 673 RQHMF 687
>gb|CO162750.1|CO162750 FLD1_37_F12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_37_F12_A029 3', mRNA sequence
Length = 797
Score = 124 bits (265), Expect(3) = 4e-050
Identities = 50/81 (61%), Positives = 63/81 (77%)
Frame = +3 / +2
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLL P KGILLFGPPGTGKTMLAKA+ATE +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 167 GLLKPCKGILLFGPPGTGKTMLAKALATEANASFINVSMSTITSKWFGEDEKNVRALFSL 346
Query: 192 ARHHAPSTIFLDEIDAIISQR 254
A +P+ IF+DE+D+++ QR
Sbjct: 347 AAKVSPTIIFIDEVDSMLGQR 409
Score = 84.5 bits (178), Expect(3) = 4e-050
Identities = 37/89 (41%), Positives = 56/89 (62%)
Frame = +3 / +2
Query: 324 LTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIP 503
L+KT E V VLAATN P++LD A++RR ++RI+V LP ++R + LL
Sbjct: 479 LSKTAERVLVLAATNRPFDLDEAIIRRFQRRIMVGLPNAESRERILRTLLAKEKLEEGFD 658
Query: 504 YDVLVEKTEGYSGSDIRLVCKEAAMQPLR 590
+ L T+GY+GSD++ +C AA +P+R
Sbjct: 659 FKELATMTDGYTGSDLKNLCTAAAFRPVR 745
Score = 28.6 bits (56), Expect(3) = 4e-050
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +2
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA R++K E + DGL
Sbjct: 422 EHEAMRKIKNEFMAHWDGL 478
>gb|CO163524.1|CO163524 FLD1_42_E02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_42_E02_A029 3', mRNA sequence
Length = 791
Score = 124 bits (265), Expect(3) = 6e-050
Identities = 50/81 (61%), Positives = 63/81 (77%)
Frame = +3 / +1
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLL P KGILLFGPPGTGKTMLAKA+ATE +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 130 GLLKPCKGILLFGPPGTGKTMLAKALATEANASFINVSMSTITSKWFGEDEKNVRALFSL 309
Query: 192 ARHHAPSTIFLDEIDAIISQR 254
A +P+ IF+DE+D+++ QR
Sbjct: 310 AAKVSPTIIFIDEVDSMLGQR 372
Score = 84.0 bits (177), Expect(3) = 6e-050
Identities = 37/89 (41%), Positives = 56/89 (62%)
Frame = +3 / +1
Query: 324 LTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIP 503
L+KT E V VLAATN P++LD A++RR ++RI+V LP ++R + LL
Sbjct: 442 LSKTAERVLVLAATNRPFDLDEAIIRRFQRRIMVGLPNAESRERILATLLAKEKLEEGFD 621
Query: 504 YDVLVEKTEGYSGSDIRLVCKEAAMQPLR 590
+ L T+GY+GSD++ +C AA +P+R
Sbjct: 622 FKELATMTDGYTGSDLKNLCTAAAFRPVR 708
Score = 28.6 bits (56), Expect(3) = 6e-050
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +1
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA R++K E + DGL
Sbjct: 385 EHEAMRKIKNEFMAHWDGL 441
>gb|DR052326.1|DR052326 RTCA1_3_H07.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_3_H07_A029 5', mRNA sequence
Length = 858
Score = 120 bits (256), Expect(3) = 7e-049
Identities = 49/81 (60%), Positives = 62/81 (76%)
Frame = +3 / +3
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLL P GILLFGPPGTGKTMLAKA+ATE +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 30 GLLKPC*GILLFGPPGTGKTMLAKALATEANASFINVSMSTITSKWFGEDEKNVRALFSL 209
Query: 192 ARHHAPSTIFLDEIDAIISQR 254
A +P+ IF+DE+D+++ QR
Sbjct: 210 AAKVSPTIIFIDEVDSMLGQR 272
Score = 84.5 bits (178), Expect(3) = 7e-049
Identities = 37/89 (41%), Positives = 56/89 (62%)
Frame = +3 / +3
Query: 324 LTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIP 503
L+KT E V VLAATN P++LD A++RR ++RI+V LP ++R + LL
Sbjct: 342 LSKTAERVLVLAATNRPFDLDEAIIRRFQRRIMVGLPNAESRERILRTLLAKEKLEEGFD 521
Query: 504 YDVLVEKTEGYSGSDIRLVCKEAAMQPLR 590
+ L T+GY+GSD++ +C AA +P+R
Sbjct: 522 FKELATMTDGYTGSDLKNLCTAAAFRPVR 608
Score = 28.6 bits (56), Expect(3) = 7e-049
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +3
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA R++K E + DGL
Sbjct: 285 EHEAMRKIKNEFMAHWDGL 341
>gb|AA739854.1|AA739854 619 PtIFG2 Pinus taeda cDNA clone 9008M 3', mRNA sequence
Length = 681
Score = 105 bits (224), Expect(3) = 4e-047
Identities = 45/75 (60%), Positives = 55/75 (73%)
Frame = +3 / +3
Query: 30 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAP 209
+GILLF PPGTGKTM AKAVATE F NIS SSI SKW G+ EK VK +F LA +
Sbjct: 111 QGILLFVPPGTGKTMXAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISX 290
Query: 210 STIFLDEIDAIISQR 254
S IF+DE+D+++ +R
Sbjct: 291 SVIFVDEVDSMLGRR 335
Score = 86.3 bits (182), Expect(3) = 4e-047
Identities = 37/91 (40%), Positives = 57/91 (62%)
Frame = +3 / +3
Query: 327 TKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPY 506
TK E V VLAATN P++LD A++RRL +R++V LP+ R + + +L ++
Sbjct: 408 TKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDTTNRAKILKVILAKEELAPDVDL 587
Query: 507 DVLVEKTEGYSGSDIRLVCKEAAMQPLRRVM 599
D + TEGYSGSD++ +C AA P+R ++
Sbjct: 588 DAIASMTEGYSGSDLKNLCVTAAYCPIREIL 680
Score = 35.4 bits (71), Expect(3) = 4e-047
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / +3
Query: 252 RGEARSEHEASRRLKTELLIQMDGLTKTDE 341
R E+ EHEA R++K E ++ DGL D+
Sbjct: 330 RRESPGEHEAMRKMKNEFMVNWDGLRTKDK 419
>gb|CF400358.1|CF400358 RTWW1_4_D05.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_4_D05_A015 5', mRNA sequence
Length = 773
Score = 90.4 bits (191), Expect(3) = 7e-043
Identities = 40/72 (55%), Positives = 49/72 (68%)
Frame = +3 / -3
Query: 270 EHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDAR 449
E E SRR+KTE L+QM+G+ D V VL ATN+PW LD A+ RR EKRI +PLP +AR
Sbjct: 630 ESEGSRRIKTEFLVQMNGVGHDDTGVLVLGATNIPWALDNAIKRRFEKRIYIPLPGLEAR 451
Query: 450 HAMFEELLPYTP 485
MFE + TP
Sbjct: 450 KRMFELHVGNTP 415
Score = 71.6 bits (150), Expect(3) = 7e-043
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = +3 / -3
Query: 123 SASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 272
S+S +VSKW+GDSE+LV+ LFE+AR P+ IF+DE+D++ R E SE
Sbjct: 771 SSSDLVSKWQGDSERLVRQLFEMARESKPAIIFIDEVDSLAGTRNEGESE 622
Score = 51.0 bits (105), Expect(3) = 7e-043
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +3 / -3
Query: 504 YDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVMA 602
Y L E+TEGYSGSDI ++ ++A MQP+R+VM+
Sbjct: 393 YRELAEQTEGYSGSDIAIIVRDALMQPVRKVMS 295
>gb|CO173695.1|CO173695 NDL1_38_G11.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_38_G11_A029 3', mRNA sequence
Length = 767
Score = 84.5 bits (178), Expect(3) = 1e-042
Identities = 33/39 (84%), Positives = 39/39 (100%)
Frame = +3 / +1
Query: 495 EIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVMAVLE 611
E+PYD++VE+TEGYSGSDIRLVCKEAAM+PLRR+MAVLE
Sbjct: 118 ELPYDLMVERTEGYSGSDIRLVCKEAAMRPLRRLMAVLE 234
Score = 73.9 bits (155), Expect(3) = 1e-042
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = +3 / +1
Query: 375 WELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPG 488
WELDAAMLRRLEKRILVPLPE +AR AMFE+LLP G
Sbjct: 1 WELDAAMLRRLEKRILVPLPEREARQAMFEDLLPSQTG 114
Score = 53.8 bits (111), Expect(3) = 1e-042
Identities = 20/32 (62%), Positives = 28/32 (87%)
Frame = +3 / +1
Query: 663 TTEDIELALRNTRPSAHLHAHRYEKFNQDYGS 758
T++DI +AL+ TRPSAHL+ +RY+KFN +YGS
Sbjct: 289 TSDDIIVALKITRPSAHLNENRYQKFNDEYGS 384
>gb|CF663657.1|CF663657 RTCNT1_4_G11.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_4_G11_A029 3', mRNA sequence
Length = 701
Score = 132 bits (283), Expect(2) = 3e-042
Identities = 53/92 (57%), Positives = 68/92 (73%)
Frame = +3 / -2
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
G PW+ LL+GPPGTGK+ LAKAVATE +TF++IS+S +VSKW G+SEKLV LF++
Sbjct: 373 GKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVSNLFQM 194
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
AR APS IF+DEID++ QRGE + R
Sbjct: 193 ARDCAPSIIFIDEIDSLCGQRGEGNESEASRR 98
Score = 60.2 bits (125), Expect(2) = 3e-042
Identities = 25/40 (62%), Positives = 31/40 (77%)
Frame = +3 / -2
Query: 267 SEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELD 386
+E EASRR+KTELL+QM G+ D+ V VLAATN P+ LD
Sbjct: 121 NESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALD 2
>gb|CF399370.1|CF399370 RTDS3_28_G12.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_28_G12_A022 3', mRNA sequence
Length = 659
Score = 132 bits (282), Expect(2) = 3e-042
Identities = 53/92 (57%), Positives = 68/92 (73%)
Frame = +3 / -1
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
G PWK LL+GPPGTGK+ LAKAVATE +TFF+IS+S +VSKW G+SEKLV LF++
Sbjct: 383 GRRKPWKAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQM 204
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
AR AP+ IF+DEID++ RGE+ + R
Sbjct: 203 ARDSAPAIIFIDEIDSLCGTRGESNESEASRR 108
Score = 60.6 bits (126), Expect(2) = 3e-042
Identities = 25/43 (58%), Positives = 33/43 (76%)
Frame = +3 / -1
Query: 267 SEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAM 395
+E EASRR+KTE+L+QM G+ D+ V VLAATN P+ LD A+
Sbjct: 131 NESEASRRIKTEVLVQMQGVGNNDDKVLVLAATNTPYALDQAI 3
>gb|DR167388.1|DR167388 RTPHOS1_18_B05.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_18_B05_A029 5', mRNA sequence
Length = 765
Score = 102 bits (217), Expect(3) = 3e-042
Identities = 41/69 (59%), Positives = 53/69 (76%)
Frame = +3 / +2
Query: 54 PGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEI 233
PGTGKTMLAKAVATE F NIS S++ SKW G++EK VK +F LA APS IF+DE+
Sbjct: 2 PGTGKTMLAKAVATEAGANFINISMSTVASKWFGEAEKYVKAVFTLANKIAPSVIFIDEV 181
Query: 234 DAIISQRGE 260
D+++ +RG+
Sbjct: 182 DSMLGRRGK 208
Score = 77.6 bits (163), Expect(3) = 3e-042
Identities = 34/91 (37%), Positives = 55/91 (60%)
Frame = +3 / +2
Query: 327 TKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPY 506
T+ E V VLAATN P++LD A++RR +R++V LP+ + R + +L +
Sbjct: 275 TRDKERVLVLAATNRPFDLDEAVIRRFPRRLMVDLPDAENRVKILRVILVDEDLAPDFKI 454
Query: 507 DVLVEKTEGYSGSDIRLVCKEAAMQPLRRVM 599
+ L T+GYSGSD++ +C AA Q +R ++
Sbjct: 455 EELATATDGYSGSDLKSLCTTAAYQRIRELL 547
Score = 30.9 bits (61), Expect(3) = 3e-042
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3 / +2
Query: 267 SEHEASRRLKTELLIQMDGLTKTDE 341
SEH A R+LK E + DGL D+
Sbjct: 212 SEHSAMRKLKNEFMASWDGLRTRDK 286
>gb|CO162833.1|CO162833 FLD1_37_F12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_37_F12_A029 5', mRNA sequence
Length = 769
Score = 124 bits (265), Expect(3) = 4e-042
Identities = 50/81 (61%), Positives = 63/81 (77%)
Frame = +3 / +3
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLL P KGILLFGPPGTGKTMLAKA+ATE +F N+S S+I SKW G+ EK V+ LF L
Sbjct: 309 GLLKPCKGILLFGPPGTGKTMLAKALATEANASFINVSMSTITSKWFGEDEKNVRALFSL 488
Query: 192 ARHHAPSTIFLDEIDAIISQR 254
A +P+ IF+DE+D+++ QR
Sbjct: 489 AAKVSPTIIFIDEVDSMLGQR 551
Score = 57.4 bits (119), Expect(3) = 4e-042
Identities = 24/49 (48%), Positives = 35/49 (71%)
Frame = +3 / +3
Query: 324 LTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEEL 470
L+KT E V VLAATN P++LD A++RR ++RI+V LP ++R + L
Sbjct: 621 LSKTAERVLVLAATNRPFDLDEAIIRRFQRRIMVGLPNAESRERILRTL 767
Score = 28.6 bits (56), Expect(3) = 4e-042
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +3
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA R++K E + DGL
Sbjct: 564 EHEAMRKIKNEFMAHWDGL 620
>gb|CO158046.1|CO158046 FLD1_4_D04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_4_D04_A029 3', mRNA sequence
Length = 586
Score = 93.2 bits (197), Expect(3) = 7e-041
Identities = 37/66 (56%), Positives = 50/66 (75%)
Frame = +3 / +1
Query: 57 GTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEID 236
GTGKTMLAKA+ATE +F N+S S+I SKW G+ EK V+ LF LA +P+ IF+DE+D
Sbjct: 1 GTGKTMLAKALATEANASFINVSMSTITSKWFGEDEKNVRALFSLAAKVSPTIIFIDEVD 180
Query: 237 AIISQR 254
+++ QR
Sbjct: 181 SMLGQR 198
Score = 84.5 bits (178), Expect(3) = 7e-041
Identities = 37/89 (41%), Positives = 56/89 (62%)
Frame = +3 / +1
Query: 324 LTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIP 503
L+KT E V VLAATN P++LD A++RR ++RI+V LP ++R + LL
Sbjct: 268 LSKTAERVLVLAATNRPFDLDEAIIRRFQRRIMVGLPNAESRERILRTLLAKEKLEEGFD 447
Query: 504 YDVLVEKTEGYSGSDIRLVCKEAAMQPLR 590
+ L T+GY+GSD++ +C AA +P+R
Sbjct: 448 FKELATMTDGYTGSDLKNLCTAAAFRPVR 534
Score = 28.6 bits (56), Expect(3) = 7e-041
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +1
Query: 270 EHEASRRLKTELLIQMDGL 326
EHEA R++K E + DGL
Sbjct: 211 EHEAMRKIKNEFMAHWDGL 267
>gb|AL751019.1|AL751019 AL751019 RS Pinus pinaster cDNA clone RS03B07 similar to AAA
ATPASE, mRNA sequence
Length = 598
Score = 132 bits (283), Expect(2) = 7e-038
Identities = 53/92 (57%), Positives = 68/92 (73%)
Frame = +3 / +3
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
G PW+ LL+GPPGTGK+ LAKAVATE +TF++IS+S +VSKW G+SEKLV LF++
Sbjct: 252 GKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVSNLFQM 431
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
AR APS IF+DEID++ QRGE + R
Sbjct: 432 ARDCAPSIIFIDEIDSLCGQRGEGNESEASRR 527
Score = 45.5 bits (93), Expect(2) = 7e-038
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = +3 / +3
Query: 267 SEHEASRRLKTELLIQMDGLTKTDELVFVLA 359
+E EASRR+KTELL+QM G+ D+ V VLA
Sbjct: 504 NESEASRRIKTELLVQMQGVGNNDQKVLVLA 596
>gb|DR692874.1|DR692874 EST1082962 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADR40 3' end, mRNA sequence
Length = 848
Score = 129 bits (276), Expect = 3e-029
Identities = 54/60 (90%), Positives = 54/60 (90%)
Frame = +3 / +1
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSE L K L
Sbjct: 553 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSENL*KYFLRL 732
Score = 104 bits (221), Expect(2) = 2e-036
Identities = 45/48 (93%), Positives = 46/48 (95%)
Frame = +3 / +3
Query: 165 KLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 308
KLVKVLFE+ARHHAPSTIFLDEIDAIIS RGE RSEHEASRRLKTELL
Sbjct: 705 KLVKVLFEVARHHAPSTIFLDEIDAIISHRGERRSEHEASRRLKTELL 848
Score = 103 bits (219), Expect(2) = 2e-037
Identities = 41/50 (82%), Positives = 46/50 (92%)
Frame = -2 / -1
Query: 160 ESPRHLLTIDEAEILKKVVLHSVATALASIVFPVPGGPNSNMPFQGDNRP 11
ESPRHLLT+D+A++LK VVLHSVATALASIVFPVPGGPN +PFQGD RP
Sbjct: 701 ESPRHLLTMDDADMLKNVVLHSVATALASIVFPVPGGPNRRIPFQGDRRP 552
Score = 73.0 bits (153), Expect(2) = 2e-037
Identities = 34/39 (87%), Positives = 36/39 (92%)
Frame = -2 / -2
Query: 307 NSSVFNRRLASCSLRASPR*LMIASISSRKIVDGA*CLA 191
+SSVF R LASCSLR SPR*L+IASISSRKIVDGA*CLA
Sbjct: 847 SSSVFKRLLASCSLRLSPR*LIIASISSRKIVDGA*CLA 731
Score = 68.9 bits (144), Expect(2) = 2e-036
Identities = 28/49 (57%), Positives = 33/49 (67%)
Frame = +2 / +3
Query: 11 RSIITLERHITVWSTWNRKDNAS*SCGY*VQNNFFQYFCLVDCKQVAR* 157
R I LER ++W TWN KDNA GY*VQNN Q+ C++ C QVAR*
Sbjct: 552 RPSIALERDSSIWPTWNWKDNACQGSGY*VQNNILQHICIIHC*QVAR* 698
>gb|CO200907.1|CO200907 RTCNT2_2_H02.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_2_H02_A029 3', mRNA sequence
Length = 788
Score = 111 bits (237), Expect(3) = 3e-037
Identities = 43/83 (51%), Positives = 60/83 (72%)
Frame = +3 / -3
Query: 24 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHH 203
P KG+LL+GPPGTGKT+LAKA+A E F N+ ++++SKW GDS+KLV +F LA+
Sbjct: 744 PSKGVLLYGPPGTGKTLLAKAIARESGAVFINVRVANLMSKWFGDSQKLVTAVFTLAQKL 565
Query: 204 APSTIFLDEIDAIISQRGEARSE 272
P+ IFLDE+D+ + QR + E
Sbjct: 564 QPAIIFLDEVDSFLGQRRSSEQE 496
Score = 43.7 bits (89), Expect(3) = 3e-037
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +3 / -3
Query: 498 IPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVMA 602
I YD + EGYSGSD+ +CK+AA P+R ++A
Sbjct: 273 IDYDHIASLCEGYSGSDLTDLCKQAAYFPIRELLA 169
Score = 38.6 bits (78), Expect(3) = 3e-037
Identities = 21/43 (48%), Positives = 26/43 (60%)
Frame = +3 / -3
Query: 345 VFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELL 473
V VLAATN P ELD A+LRRL + V +P R + E +L
Sbjct: 426 VTVLAATNRPEELDEAILRRLPRVFEVGMPSCIERAKILEVVL 298
>gb|DR013601.1|DR013601 HEAT1_20_G06.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_G06_A029 3', mRNA sequence
Length = 685
Score = 84.5 bits (178), Expect(3) = 7e-035
Identities = 33/39 (84%), Positives = 39/39 (100%)
Frame = +3 / +2
Query: 495 EIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVMAVLE 611
E+PYD++VE+TEGYSGSDIRLVCKEAAM+PLRR+MAVLE
Sbjct: 86 ELPYDLMVERTEGYSGSDIRLVCKEAAMRPLRRLMAVLE 202
Score = 53.8 bits (111), Expect(3) = 7e-035
Identities = 20/32 (62%), Positives = 28/32 (87%)
Frame = +3 / +2
Query: 663 TTEDIELALRNTRPSAHLHAHRYEKFNQDYGS 758
T++DI +AL+ TRPSAHL+ +RY+KFN +YGS
Sbjct: 257 TSDDIIVALKITRPSAHLNENRYQKFNDEYGS 352
Score = 47.8 bits (98), Expect(3) = 7e-035
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +3 / +2
Query: 408 EKRILVPLPEPDARHAMFEELLPYTPG 488
EKRILVPLPE +AR AMFE+LLP G
Sbjct: 2 EKRILVPLPEREARQAMFEDLLPSQTG 82
>gb|DT633037.1|DT633037 EST1147968 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFQ52 3' end, mRNA sequence
Length = 887
Score = 93.2 bits (197), Expect(3) = 2e-034
Identities = 41/73 (56%), Positives = 52/73 (71%)
Frame = +3 / +1
Query: 267 SEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDA 446
+E EASRR+KTE+L+QM G+ D+ V VLAATN P+ LD A+ RR +KRI +PLPE A
Sbjct: 121 NESEASRRIKTEVLVQMQGVGNNDDKVLVLAATNTPYALDQAIRRRFDKRIYIPLPEVKA 300
Query: 447 RHAMFEELLPYTP 485
R MF+ L TP
Sbjct: 301 RQHMFKVHLGDTP 339
Score = 54.7 bits (113), Expect(3) = 2e-034
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +3 / +1
Query: 153 GDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
G+SEKLV LF++AR AP+ IF+DEID++ RGE+ + R
Sbjct: 10 GESEKLVANLFQMARDSAPAIIFIDEIDSLCGTRGESNESEASRR 144
Score = 36.8 bits (74), Expect(3) = 2e-034
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3 / +1
Query: 495 EIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVMAVLEGRK 620
E ++ L +TEG+SGSD+ + K+ +P+R+ + RK
Sbjct: 352 ESDFEELACRTEGFSGSDVAVCVKDVLFEPVRKTQDAMFFRK 477
>gb|DR022259.1|DR022259 STRS1_49_H04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_49_H04_A034 5', mRNA sequence
Length = 862
Score = 77.1 bits (162), Expect(3) = 2e-034
Identities = 33/91 (36%), Positives = 56/91 (61%)
Frame = +3 / +2
Query: 327 TKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPY 506
+K + + VL ATN P++LD A++RRL +RI V LP+ + R + +L + +
Sbjct: 254 SKESQRILVLGATNRPFDLDDAVIRRLPRRIYVDLPDAENRAKILRVILAQEKVVDDFDF 433
Query: 507 DVLVEKTEGYSGSDIRLVCKEAAMQPLRRVM 599
+ L TEGYSGSD++ +C AA +P++ ++
Sbjct: 434 NELACATEGYSGSDLKNLCIAAAYRPIQELL 526
Score = 76.7 bits (161), Expect(3) = 2e-034
Identities = 32/69 (46%), Positives = 42/69 (60%)
Frame = +3 / +2
Query: 81 KAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGE 260
KA+ATE F +I+ S++ SKW GD+EKL K LF A AP IF+DE+D+I+ RG
Sbjct: 8 KALATEAGANFLSITGSTLTSKWFGDAEKLTKALFSFASRLAPVIIFIDEVDSILGARGG 187
Query: 261 ARSEHEASR 287
A R
Sbjct: 188 ASEHEATRR 214
Score = 30.9 bits (61), Expect(3) = 2e-034
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3 / +2
Query: 267 SEHEASRRLKTELLIQMDGL 326
SEHEA+RR++ E + DGL
Sbjct: 191 SEHEATRRMRNEFMAAWDGL 250
>gb|DR685649.1|DR685649 EST1075726 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB626 3' end, mRNA sequence
Length = 851
Score = 93.2 bits (197), Expect(3) = 2e-034
Identities = 41/73 (56%), Positives = 52/73 (71%)
Frame = +3 / +2
Query: 267 SEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDA 446
+E EASRR+KTE+L+QM G+ D+ V VLAATN P+ LD A+ RR +KRI +PLPE A
Sbjct: 113 NESEASRRIKTEVLVQMQGVGNNDDKVLVLAATNTPYALDQAIRRRFDKRIYIPLPEVKA 292
Query: 447 RHAMFEELLPYTP 485
R MF+ L TP
Sbjct: 293 RQHMFKVHLGDTP 331
Score = 54.7 bits (113), Expect(3) = 2e-034
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +3 / +2
Query: 153 GDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
G+SEKLV LF++AR AP+ IF+DEID++ RGE+ + R
Sbjct: 2 GESEKLVANLFQMARDSAPAIIFIDEIDSLCGTRGESNESEASRR 136
Score = 36.8 bits (74), Expect(3) = 2e-034
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3 / +2
Query: 495 EIPYDVLVEKTEGYSGSDIRLVCKEAAMQPLRRVMAVLEGRK 620
E ++ L +TEG+SGSD+ + K+ +P+R+ + RK
Sbjct: 344 ESDFEELACRTEGFSGSDVAVCVKDVLFEPVRKTQDAMFFRK 469
>gb|DR058914.1|DR058914 RTNIT1_14_D07.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_14_D07_A029 5', mRNA sequence
Length = 542
Score = 111 bits (238), Expect(3) = 2e-034
Identities = 43/86 (50%), Positives = 61/86 (70%)
Frame = +3 / +2
Query: 15 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 194
LL P KG+LL+GPPGTGKT+LAKA+A E F N+ ++++SKW GD++KLV +F LA
Sbjct: 32 LLGPQKGVLLYGPPGTGKTLLAKAIAKESGAVFINVRIANLMSKWFGDAQKLVSAVFSLA 211
Query: 195 RHHAPSTIFLDEIDAIISQRGEARSE 272
P+ IF+DE+D+ + QR + E
Sbjct: 212 YKLQPAIIFIDEVDSFLGQRRSSEHE 289
Score = 46.4 bits (95), Expect(3) = 2e-034
Identities = 24/61 (39%), Positives = 32/61 (52%)
Frame = +3 / +2
Query: 327 TKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPY 506
T + V VLAATN PWELD A+LRRL + V +P R + + +L I +
Sbjct: 341 TDQNARVMVLAATNRPWELDEAILRRLPQAFEVRMPNCAERAKILKVILKGENAEDNIDF 520
Query: 507 D 509
D
Sbjct: 521 D 523
Score = 26.3 bits (51), Expect(3) = 2e-034
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3 / +2
Query: 267 SEHEASRRLKTELLIQMDGLT 329
SEHE +KTE + DG T
Sbjct: 278 SEHEVVTNMKTEFMALWDGFT 340
>gb|CF665105.1|CF665105 RTCNT1_14_A11.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_14_A11_A029 3', mRNA sequence
Length = 773
Score = 92.7 bits (196), Expect(2) = 8e-034
Identities = 38/88 (43%), Positives = 57/88 (64%)
Frame = +3 / +1
Query: 339 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLV 518
++V VLAATN PW++D A+ RRLEKRI +PLP ++R + L ++ D +
Sbjct: 232 KIVMVLAATNFPWDIDEALRRRLEKRIYIPLPAFESRKELIRINLKGVEVAPDVDIDEVA 411
Query: 519 EKTEGYSGSDIRLVCKEAAMQPLRRVMA 602
+TEGYSG D+ VC++A+M +RR +A
Sbjct: 412 RRTEGYSGDDLTNVCRDASMNGMRRKIA 495
Score = 71.6 bits (150), Expect(2) = 8e-034
Identities = 26/54 (48%), Positives = 42/54 (77%)
Frame = +3 / +1
Query: 126 ASSIVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR 287
++++ SKWRG+SE++V+ LF+LAR +APSTIF+DEID++ + RG + + R
Sbjct: 1 SATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRR 162
>gb|BG318079.1|BG318079 NXPV_010_C04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_010_C04 5' similar to Arabidopsis
thaliana sequence At3g27120 spastin protein, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 559
Score = 127 bits (273), Expect(2) = 1e-033
Identities = 53/87 (60%), Positives = 65/87 (74%)
Frame = +3 / +3
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GL P +G+LLFGPPG GKTMLAKAVA+EC TFF+I+ASS+ SKW G+ EKL+K LF +
Sbjct: 165 GLRKPPRGLLLFGPPGNGKTMLAKAVASECTATFFSIAASSLTSKWVGEGEKLMKALFSV 344
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSE 272
A PS IF+DEID+I+S R E
Sbjct: 345 AVARQPSVIFIDEIDSIMSARSATEHE 425
Score = 35.9 bits (72), Expect(2) = 1e-033
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +3 / +3
Query: 267 SEHEASRRLKTELLIQMDGL 326
+EHEASR LK+E LIQ DG+
Sbjct: 414 TEHEASRXLKSEFLIQFDGV 473
>gb|BG318838.1|BG318838 NXPV_020_E07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_020_E07 5' similar to Arabidopsis
thaliana sequence At3g27120 spastin protein, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 525
Score = 126 bits (270), Expect(2) = 3e-033
Identities = 52/81 (64%), Positives = 64/81 (79%)
Frame = +3 / +3
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GL P +G+LLFGPPG GKTMLAKAVA+EC TFF+I+ASS+ SKW G+ EKL+K LF +
Sbjct: 165 GLRKPPRGLLLFGPPGNGKTMLAKAVASECTATFFSIAASSLTSKWVGEGEKLMKALFSV 344
Query: 192 ARHHAPSTIFLDEIDAIISQR 254
A PS IF+DEID+I+S R
Sbjct: 345 AVARQPSVIFIDEIDSIMSAR 407
Score = 35.9 bits (72), Expect(2) = 3e-033
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +3 / +3
Query: 267 SEHEASRRLKTELLIQMDGL 326
+EHEASR LK+E LIQ DG+
Sbjct: 414 TEHEASRXLKSEFLIQFDGV 473
>gb|BQ695881.1|BQ695881 NXPV_033_G02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_033_G02 5' similar to Arabidopsis
thaliana sequence At3g27120 spastin protein, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 556
Score = 127 bits (273), Expect(2) = 6e-033
Identities = 53/87 (60%), Positives = 65/87 (74%)
Frame = +3 / +3
Query: 12 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFEL 191
GL P +G+LLFGPPG GKTMLAKAVA+EC TFF+I+ASS+ SKW G+ EKL+K LF +
Sbjct: 165 GLRKPPRGLLLFGPPGNGKTMLAKAVASECTATFFSIAASSLTSKWVGEGEKLMKALFSV 344
Query: 192 ARHHAPSTIFLDEIDAIISQRGEARSE 272
A PS IF+DEID+I+S R E
Sbjct: 345 AVARQPSVIFIDEIDSIMSARSATEHE 425
Score = 33.6 bits (67), Expect(2) = 6e-033
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3 / +3
Query: 267 SEHEASRRLKTELLIQMDGL 326
+EHEASR K+E LIQ DG+
Sbjct: 414 TEHEASRXXKSEFLIQFDGV 473
>gb|DR057719.1|DR057719 RTNIT1_7_A04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_7_A04_A029 5', mRNA sequence
Length = 869
Score = 105 bits (225), Expect(3) = 7e-033
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +3
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 201 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 380
Query: 198 HHAPSTIFLDEIDAIISQRGEA 263
AP +F DE+D+I +QRG +
Sbjct: 381 QSAPCVLFFDELDSIATQRGSS 446
Score = 51.0 bits (105), Expect(3) = 7e-033
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +3 / +3
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQ 581
RL++ I +PLP+ +R +F+ L +P ++ L T+G+SG+DI +C+ A
Sbjct: 591 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRACKY 770
Query: 582 PLR 590
+R
Sbjct: 771 AIR 779
Score = 22.1 bits (42), Expect(3) = 7e-033
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +3
Query: 279 ASRRLKTELLIQMDGLT 329
A+ R+ +LL +MDG+T
Sbjct: 465 AADRVLNQLLTEMDGMT 515
>gb|CO166204.1|CO166204 FLD1_60_D04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_60_D04_A029 3', mRNA sequence
Length = 839
Score = 105 bits (225), Expect(3) = 7e-033
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / -2
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 607 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 428
Query: 198 HHAPSTIFLDEIDAIISQRGEA 263
AP +F DE+D+I +QRG +
Sbjct: 427 QSAPCVLFFDELDSIATQRGSS 362
Score = 51.0 bits (105), Expect(3) = 7e-033
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +3 / -2
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQ 581
RL++ I +PLP+ +R +F+ L +P ++ L T+G+SG+DI +C+ A
Sbjct: 217 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRACKY 38
Query: 582 PLR 590
+R
Sbjct: 37 AIR 29
Score = 22.1 bits (42), Expect(3) = 7e-033
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / -2
Query: 279 ASRRLKTELLIQMDGLT 329
A+ R+ +LL +MDG+T
Sbjct: 343 AADRVLNQLLTEMDGMT 293
>gb|DR015665.1|DR015665 STRS1_4_H05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_4_H05_A034 5', mRNA sequence
Length = 761
Score = 105 bits (225), Expect(3) = 7e-033
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +1
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 76 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 255
Query: 198 HHAPSTIFLDEIDAIISQRGEA 263
AP +F DE+D+I +QRG +
Sbjct: 256 QSAPCVLFFDELDSIATQRGSS 321
Score = 51.0 bits (105), Expect(3) = 7e-033
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +3 / +1
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQ 581
RL++ I +PLP+ +R +F+ L +P ++ L T+G+SG+DI +C+ A
Sbjct: 466 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRACKY 645
Query: 582 PLR 590
+R
Sbjct: 646 AIR 654
Score = 22.1 bits (42), Expect(3) = 7e-033
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +1
Query: 279 ASRRLKTELLIQMDGLT 329
A+ R+ +LL +MDG+T
Sbjct: 340 AADRVLNQLLTEMDGMT 390
>gb|CF672272.1|CF672272 RTCNT1_62_B04.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_62_B04_A029 5', mRNA sequence
Length = 759
Score = 105 bits (225), Expect(3) = 7e-033
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +1
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 25 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 204
Query: 198 HHAPSTIFLDEIDAIISQRGEA 263
AP +F DE+D+I +QRG +
Sbjct: 205 QSAPCVLFFDELDSIATQRGSS 270
Score = 51.0 bits (105), Expect(3) = 7e-033
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +3 / +1
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQ 581
RL++ I +PLP+ +R +F+ L +P ++ L T+G+SG+DI +C+ A
Sbjct: 415 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRACKY 594
Query: 582 PLR 590
+R
Sbjct: 595 AIR 603
Score = 22.1 bits (42), Expect(3) = 7e-033
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +1
Query: 279 ASRRLKTELLIQMDGLT 329
A+ R+ +LL +MDG+T
Sbjct: 289 AADRVLNQLLTEMDGMT 339
>gb|CO173994.1|CO173994 NDL1_41_B04.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_41_B04_A029 3', mRNA sequence
Length = 756
Score = 105 bits (225), Expect(3) = 7e-033
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / -2
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 641 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 462
Query: 198 HHAPSTIFLDEIDAIISQRGEA 263
AP +F DE+D+I +QRG +
Sbjct: 461 QSAPCVLFFDELDSIATQRGSS 396
Score = 51.0 bits (105), Expect(3) = 7e-033
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +3 / -2
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQ 581
RL++ I +PLP+ +R +F+ L +P ++ L T+G+SG+DI +C+ A
Sbjct: 251 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRACKY 72
Query: 582 PLR 590
+R
Sbjct: 71 AIR 63
Score = 22.1 bits (42), Expect(3) = 7e-033
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / -2
Query: 279 ASRRLKTELLIQMDGLT 329
A+ R+ +LL +MDG+T
Sbjct: 377 AADRVLNQLLTEMDGMT 327
>gb|DN626613.1|DN626613 EST977429 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAA531, mRNA sequence
Length = 869
Score = 105 bits (225), Expect(3) = 2e-032
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / -3
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 786 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 607
Query: 198 HHAPSTIFLDEIDAIISQRGEA 263
AP +F DE+D+I +QRG +
Sbjct: 606 QSAPCVLFFDELDSIATQRGSS 541
Score = 49.6 bits (102), Expect(3) = 2e-032
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +3 / -3
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQ 581
RL + I +PLP+ +R +F+ L +P ++ L T+G+SG+DI +C+ A
Sbjct: 396 RLGQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICRRACKY 217
Query: 582 PLR 590
+R
Sbjct: 216 AIR 208
Score = 22.1 bits (42), Expect(3) = 2e-032
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / -3
Query: 279 ASRRLKTELLIQMDGLT 329
A+ R+ +LL +MDG+T
Sbjct: 522 AADRVLNQLLTEMDGMT 472
>gb|DR023326.1|DR023326 STRS1_56_G11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_56_G11_A034 5', mRNA sequence
Length = 784
Score = 105 bits (225), Expect(3) = 2e-032
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +3
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 210 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 389
Query: 198 HHAPSTIFLDEIDAIISQRGEA 263
AP +F DE+D+I +QRG +
Sbjct: 390 QSAPCVLFFDELDSIATQRGSS 455
Score = 49.2 bits (101), Expect(3) = 2e-032
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +3 / +3
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEA 572
RL++ I +PLP+ +R +F+ L +P ++ L T+G+SG+DI +C+ A
Sbjct: 600 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRA 770
Score = 22.1 bits (42), Expect(3) = 2e-032
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +3
Query: 279 ASRRLKTELLIQMDGLT 329
A+ R+ +LL +MDG+T
Sbjct: 474 AADRVLNQLLTEMDGMT 524
>gb|CO170358.1|CO170358 NDL1_13_C10.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_13_C10_A029 5', mRNA sequence
Length = 752
Score = 105 bits (225), Expect(3) = 2e-032
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +3
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 177 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 356
Query: 198 HHAPSTIFLDEIDAIISQRGEA 263
AP +F DE+D+I +QRG +
Sbjct: 357 QSAPCVLFFDELDSIATQRGSS 422
Score = 49.2 bits (101), Expect(3) = 2e-032
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +3 / +3
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEA 572
RL++ I +PLP+ +R +F+ L +P ++ L T+G+SG+DI +C+ A
Sbjct: 567 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRA 737
Score = 22.1 bits (42), Expect(3) = 2e-032
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +3
Query: 279 ASRRLKTELLIQMDGLT 329
A+ R+ +LL +MDG+T
Sbjct: 441 AADRVLNQLLTEMDGMT 491
>gb|CF473795.1|CF473795 RTWW2_4_A12.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_4_A12_A021 5', mRNA sequence
Length = 661
Score = 105 bits (225), Expect(3) = 2e-032
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +2
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 86 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 265
Query: 198 HHAPSTIFLDEIDAIISQRGEA 263
AP +F DE+D+I +QRG +
Sbjct: 266 QSAPCVLFFDELDSIATQRGSS 331
Score = 49.2 bits (101), Expect(3) = 2e-032
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +3 / +2
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEA 572
RL++ I +PLP+ +R +F+ L +P ++ L T+G+SG+DI +C+ A
Sbjct: 476 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRA 646
Score = 22.1 bits (42), Expect(3) = 2e-032
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +2
Query: 279 ASRRLKTELLIQMDGLT 329
A+ R+ +LL +MDG+T
Sbjct: 350 AADRVLNQLLTEMDGMT 400
>gb|DN614642.1|DN614642 EST967692 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAC645, mRNA sequence
Length = 630
Score = 103 bits (219), Expect(3) = 5e-032
Identities = 38/82 (46%), Positives = 56/82 (68%)
Frame = +3 / -3
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ F+ AR
Sbjct: 604 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRETFDKAR 425
Query: 198 HHAPSTIFLDEIDAIISQRGEA 263
AP +F DE+D I +QRG +
Sbjct: 424 QSAPCVLFFDELDFIATQRGSS 359
Score = 51.0 bits (105), Expect(3) = 5e-032
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +3 / -3
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEAAMQ 581
RL++ I +PLP+ +R +F+ L +P ++ L T+G+SG+DI +C+ A
Sbjct: 214 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRACKY 35
Query: 582 PLR 590
+R
Sbjct: 34 AIR 26
Score = 22.1 bits (42), Expect(3) = 5e-032
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / -3
Query: 279 ASRRLKTELLIQMDGLT 329
A+ R+ +LL +MDG+T
Sbjct: 340 AADRVLNQLLTEMDGMT 290
>gb|CO362049.1|CO362049 NDL2_8_G08.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_G08_A029 5', mRNA sequence
Length = 757
Score = 105 bits (225), Expect(3) = 8e-032
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +1
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 199 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 378
Query: 198 HHAPSTIFLDEIDAIISQRGEA 263
AP +F DE+D+I +QRG +
Sbjct: 379 QSAPCVLFFDELDSIATQRGSS 444
Score = 47.3 bits (97), Expect(3) = 8e-032
Identities = 18/55 (32%), Positives = 33/55 (60%)
Frame = +3 / +1
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCK 566
RL++ I +PLP+ +R +F+ L +P ++ L T+G+SG+DI +C+
Sbjct: 589 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQ 753
Score = 22.1 bits (42), Expect(3) = 8e-032
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +1
Query: 279 ASRRLKTELLIQMDGLT 329
A+ R+ +LL +MDG+T
Sbjct: 463 AADRVLNQLLTEMDGMT 513
>gb|CO197549.1|CO197549 GEO1_7_G02.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_7_G02_A029 3', mRNA sequence
Length = 664
Score = 121 bits (259), Expect(2) = 1e-031
Identities = 51/80 (63%), Positives = 60/80 (75%)
Frame = +3 / -2
Query: 15 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 194
L P KGILLFGPPGTGKTMLAKAVATE F NIS SSI SKW G+ EK VK +F LA
Sbjct: 333 LTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA 154
Query: 195 RHHAPSTIFLDEIDAIISQR 254
+PS IF+DE+D+++ +R
Sbjct: 153 SKISPSVIFVDEVDSMLGRR 94
Score = 35.4 bits (71), Expect(2) = 1e-031
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / -2
Query: 252 RGEARSEHEASRRLKTELLIQMDGLTKTDE 341
R E+ EHEA R++K E ++ DGL D+
Sbjct: 99 RRESPGEHEAMRKMKNEFMVNWDGLRTKDK 10
>gb|DN630131.1|DN630131 EST980947 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTABP55, mRNA sequence
Length = 749
Score = 105 bits (225), Expect(3) = 2e-031
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +3 / +2
Query: 18 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELAR 197
+SP KG+L +GPPG GKT+LAKA+A EC+ F ++ +++ W G+SE V+ +F+ AR
Sbjct: 188 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR 367
Query: 198 HHAPSTIFLDEIDAIISQRGEA 263
AP +F DE+D+I +QRG +
Sbjct: 368 QSAPCVLFFDELDSIATQRGSS 433
Score = 46.0 bits (94), Expect(3) = 2e-031
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +3 / +2
Query: 402 RLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPYDVLVEKTEGYSGSDIRLVCKEA 572
RL++ I +PLP+ +R +F+ L +P ++ L T+ +SG+DI +C+ A
Sbjct: 578 RLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQRFSGADITEICRRA 748
Score = 22.1 bits (42), Expect(3) = 2e-031
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +2
Query: 279 ASRRLKTELLIQMDGLT 329
A+ R+ +LL +MDG+T
Sbjct: 452 AADRVLNQLLTEMDGMT 502
>gb|DN609158.1|DN609158 EST962208 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAA931, mRNA sequence
Length = 470
Score = 119 bits (254), Expect(2) = 6e-031
Identities = 50/80 (62%), Positives = 59/80 (73%)
Frame = +3 / +1
Query: 15 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 194
L P KGILLFGPPGTGKTMLAKAVATE F NIS SS SKW G+ EK VK +F LA
Sbjct: 139 LTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSTTSKWFGEGEKYVKAVFSLA 318
Query: 195 RHHAPSTIFLDEIDAIISQR 254
+PS IF+DE+D+++ +R
Sbjct: 319 SKISPSVIFVDEVDSMLGRR 378
Score = 35.4 bits (71), Expect(2) = 6e-031
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / +1
Query: 252 RGEARSEHEASRRLKTELLIQMDGLTKTDE 341
R E+ EHEA R++K E ++ DGL D+
Sbjct: 373 RRESPGEHEAMRKMKNEFMVNWDGLRTKDK 462
>gb|DT627615.1|DT627615 EST1156364 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCO62 5' end, mRNA sequence
Length = 470
Score = 119 bits (254), Expect(2) = 6e-031
Identities = 50/80 (62%), Positives = 59/80 (73%)
Frame = +3 / -1
Query: 15 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSEKLVKVLFELA 194
L P KGILLFGPPGTGKTMLAKAVATE F NIS SS SKW G+ EK VK +F LA
Sbjct: 332 LTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSTTSKWFGEGEKYVKAVFSLA 153
Query: 195 RHHAPSTIFLDEIDAIISQR 254
+PS IF+DE+D+++ +R
Sbjct: 152 SKISPSVIFVDEVDSMLGRR 93
Score = 35.4 bits (71), Expect(2) = 6e-031
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / -1
Query: 252 RGEARSEHEASRRLKTELLIQMDGLTKTDE 341
R E+ EHEA R++K E ++ DGL D+
Sbjct: 98 RRESPGEHEAMRKMKNEFMVNWDGLRTKDK 9
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 486,078,549
Number of Sequences: 355925
Number of extensions: 7239952
Number of successful extensions: 41972
Number of sequences better than 1.0e-020: 150
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 13069059680
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)