TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067043.2.1
(834 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO366784.1|CO366784 RTK1_30_C03.b1_A029 Roots minus pota... 174 2e-054
gb|DR024132.1|DR024132 STRS1_62_C08.g1_A034 Shoot tip pitch... 174 2e-054
gb|CF475712.1|CF475712 RTWW2_11_F05.g1_A021 Well-watered lo... 174 2e-054
gb|DT631887.1|DT631887 EST1146818 Normalized pine embryo li... 173 3e-054
gb|DR684091.1|DR684091 EST1074168 Normalized pine embryo li... 173 3e-054
gb|DR100836.1|DR100836 STRR1_68_D11.g1_A033 Stem Response R... 174 2e-053
gb|DR100804.1|DR100804 STRR1_68_D11.b1_A033 Stem Response R... 167 3e-052
gb|CO165801.1|CO165801 FLD1_57_E04.b1_A029 Root flooded Pin... 174 8e-047
gb|BX253798.1|BX253798 BX253798 Pinus pinaster differenciat... 175 2e-046
gb|BG317820.1|BG317820 NXPV_006_B01_F NXPV (Nsf Xylem Plani... 164 1e-045
gb|DR024075.1|DR024075 STRS1_62_C08.b1_A034 Shoot tip pitch... 135 7e-043
gb|CO165812.1|CO165812 FLD1_57_F04.b1_A029 Root flooded Pin... 163 1e-039
gb|DR069285.1|DR069285 RTDK1_6_E03.b1_A029 Roots, dark Pinu... 162 2e-039
gb|DR024213.1|DR024213 STRS1_63_D04.b1_A034 Shoot tip pitch... 122 7e-039
gb|DR024254.1|DR024254 STRS1_63_D04.g1_A034 Shoot tip pitch... 149 3e-035
gb|CO165868.1|CO165868 FLD1_57_E04.g1_A029 Root flooded Pin... 109 6e-035
gb|DR685785.1|DR685785 EST1075862 Normalized pine embryo li... 147 8e-035
gb|DT632919.1|DT632919 EST1147850 Normalized pine embryo li... 147 8e-035
gb|CO162312.1|CO162312 FLD1_34_B10.g1_A029 Root flooded Pin... 146 2e-034
gb|DR095848.1|DR095848 STRR1_24_B06.b1_A033 Stem Response R... 134 6e-031
gb|CO364393.1|CO364393 RTK1_15_A08.g1_A029 Roots minus pota... 95 8e-031
gb|DR025587.1|DR025587 STRS1_72_B09.g1_A034 Shoot tip pitch... 95 8e-031
gb|CF667838.1|CF667838 RTCNT1_32_G06.g1_A029 Root control P... 115 4e-030
gb|DR069348.1|DR069348 RTDK1_6_E03.g1_A029 Roots, dark Pinu... 86 6e-029
gb|BQ701847.1|BQ701847 NXSI_121_C04_F NXSI (Nsf Xylem Side ... 124 7e-028
gb|DR025125.1|DR025125 STRS1_69_F02.g1_A034 Shoot tip pitch... 80 3e-027
gb|DR165633.1|DR165633 RTPHOS1_6_H02.b1_A029 Roots minus ph... 81 2e-026
gb|CO170146.1|CO170146 NDL1_12_B03.b1_A029 Needles control ... 68 2e-023
gb|DR054830.1|DR054830 RTCA1_19_G05.g1_A029 Roots minus cal... 109 3e-023
gb|CO197205.1|CO197205 GEO1_4_C10.g1_A029 Root gravitropism... 108 4e-023
gb|AI813035.1|AI813035 20A4 Pine Lambda Zap Xylem library P... 103 1e-021
gb|DR165931.1|DR165931 RTPHOS1_8_F02.b1_A029 Roots minus ph... 63 4e-021
gb|CO366854.1|CO366854 RTK1_30_C03.g1_A029 Roots minus pota... 100 1e-020
>gb|CO366784.1|CO366784 RTK1_30_C03.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_30_C03_A029 3', mRNA sequence
Length = 853
Score = 174 bits (374), Expect(2) = 2e-054
Identities = 70/152 (46%), Positives = 93/152 (61%)
Frame = +3 / +2
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L++K Y+ P++ PFFP+DL PL P P+VLHP AS + +N IW MYF EL
Sbjct: 11 ETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVEL 190
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNS 362
LP GDDG+Y T D+ACLQ +S+RIH GK+VAE KF+D+ +EY I+ +D +
Sbjct: 191 LPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQDREA 370
Query: 363 LMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLD 458
LM++LTF T+GQ V LD
Sbjct: 371 LMNLLTFENVEAMVQRRVELKTMTYGQEVNLD 466
Score = 58.8 bits (122), Expect(2) = 2e-054
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +3 / +2
Query: 489 KVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD* 587
K+ P +++ LY QWVMPLTK V+VEYLLRRLD*
Sbjct: 491 KIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 589
>gb|DR024132.1|DR024132 STRS1_62_C08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_C08_A034 5', mRNA sequence
Length = 766
Score = 174 bits (374), Expect(2) = 2e-054
Identities = 70/152 (46%), Positives = 93/152 (61%)
Frame = +3 / +2
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L++K Y+ P++ PFFP+DL PL P P+VLHP AS + +N IW MYF EL
Sbjct: 140 ETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVEL 319
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNS 362
LP GDDG+Y T D+ACLQ +S+RIH GK+VAE KF+D+ +EY I+ +D +
Sbjct: 320 LPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQDREA 499
Query: 363 LMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLD 458
LM++LTF T+GQ V LD
Sbjct: 500 LMNLLTFENVEAMVQRRVELKTMTYGQEVNLD 595
Score = 58.8 bits (122), Expect(2) = 2e-054
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +3 / +2
Query: 489 KVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD* 587
K+ P +++ LY QWVMPLTK V+VEYLLRRLD*
Sbjct: 620 KIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 718
>gb|CF475712.1|CF475712 RTWW2_11_F05.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_11_F05_A021 5', mRNA sequence
Length = 710
Score = 174 bits (374), Expect(2) = 2e-054
Identities = 70/152 (46%), Positives = 93/152 (61%)
Frame = +3 / +2
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L++K Y+ P++ PFFP+DL PL P P+VLHP AS + +N IW MYF EL
Sbjct: 98 ETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVEL 277
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNS 362
LP GDDG+Y T D+ACLQ +S+RIH GK+VAE KF+D+ +EY I+ +D +
Sbjct: 278 LPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQDREA 457
Query: 363 LMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLD 458
LM++LTF T+GQ V LD
Sbjct: 458 LMNLLTFENVEAMVQRRVELKTMTYGQEVNLD 553
Score = 58.8 bits (122), Expect(2) = 2e-054
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +3 / +2
Query: 489 KVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD* 587
K+ P +++ LY QWVMPLTK V+VEYLLRRLD*
Sbjct: 578 KIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 676
>gb|DT631887.1|DT631887 EST1146818 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFD90 3' end, mRNA sequence
Length = 842
Score = 173 bits (373), Expect(2) = 3e-054
Identities = 70/152 (46%), Positives = 93/152 (61%)
Frame = +3 / +1
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L++K Y+ P++ PFFP+DL PL P P+VLHP AS + +N IW MYF EL
Sbjct: 205 ETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVEL 384
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNS 362
LP GDDG+Y T D+ACLQ +S+RIH GK+VAE KF+D+ +EY I+ +D +
Sbjct: 385 LPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRVQDREA 564
Query: 363 LMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLD 458
LM++LTF T+GQ V LD
Sbjct: 565 LMNLLTFENVEAMVQRRVELKTMTYGQEVNLD 660
Score = 58.8 bits (122), Expect(2) = 3e-054
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +3 / +1
Query: 489 KVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD* 587
K+ P +++ LY QWVMPLTK V+VEYLLRRLD*
Sbjct: 685 KIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 783
>gb|DR684091.1|DR684091 EST1074168 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAO79 3' end, mRNA sequence
Length = 780
Score = 173 bits (373), Expect(2) = 3e-054
Identities = 70/152 (46%), Positives = 93/152 (61%)
Frame = +3 / +1
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L++K Y+ P++ PFFP+DL PL P P+VLHP AS + +N IW MYF EL
Sbjct: 166 ETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVEL 345
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNS 362
LP GDDG+Y T D+ACLQ +S+RIH GK+VAE KF+D+ +EY I+ +D +
Sbjct: 346 LPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRVQDREA 525
Query: 363 LMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLD 458
LM++LTF T+GQ V LD
Sbjct: 526 LMNLLTFENVEAMVQRRVELKTMTYGQEVNLD 621
Score = 58.8 bits (122), Expect(2) = 3e-054
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +3 / +1
Query: 489 KVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD* 587
K+ P +++ LY QWVMPLTK V+VEYLLRRLD*
Sbjct: 646 KIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 744
>gb|DR100836.1|DR100836 STRR1_68_D11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_68_D11_A033 5', mRNA sequence
Length = 735
Score = 174 bits (374), Expect(2) = 2e-053
Identities = 70/152 (46%), Positives = 93/152 (61%)
Frame = +3 / +3
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L++K Y+ P++ PFFP+DL PL P P+VLHP AS + +N IW MYF EL
Sbjct: 162 ETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVEL 341
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNS 362
LP GDDG+Y T D+ACLQ +S+RIH GK+VAE KF+D+ +EY I+ +D +
Sbjct: 342 LPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQDREA 521
Query: 363 LMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLD 458
LM++LTF T+GQ V LD
Sbjct: 522 LMNLLTFENVEAMVQRRVELKTMTYGQEVNLD 617
Score = 55.6 bits (115), Expect(2) = 2e-053
Identities = 21/31 (67%), Positives = 26/31 (83%)
Frame = +3 / +3
Query: 489 KVDPKVLSKLYDQWVMPLTKDVEVEYLLRRL 581
K+ P +++ LY QWVMPLTK V+VEYLLRRL
Sbjct: 642 KIQPSLIAGLYAQWVMPLTKKVQVEYLLRRL 734
>gb|DR100804.1|DR100804 STRR1_68_D11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_68_D11_A033 3', mRNA sequence
Length = 821
Score = 167 bits (359), Expect(2) = 3e-052
Identities = 67/145 (46%), Positives = 88/145 (60%)
Frame = +3 / +1
Query: 24 KAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDELLPLFTVD 203
K Y+ P++ PFFP+DL PL P P+VLHP AS + +N IW MYF ELLP
Sbjct: 1 KVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVELLPRIAAV 180
Query: 204 GDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNSLMDMLTF 383
GDDG+Y T D+ACLQ +S+RIH GK+VAE KF+D+ +EY I+ +D +LM++LTF
Sbjct: 181 GDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQDREALMNLLTF 360
Query: 384 XXXXXXXXXXXXXXXXTFGQNVTLD 458
T+GQ V LD
Sbjct: 361 ENVEAMVQRRVELKTMTYGQEVNLD 435
Score = 58.8 bits (122), Expect(2) = 3e-052
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +3 / +1
Query: 489 KVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD* 587
K+ P +++ LY QWVMPLTK V+VEYLLRRLD*
Sbjct: 460 KIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 558
>gb|CO165801.1|CO165801 FLD1_57_E04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_E04_A029 3', mRNA sequence
Length = 788
Score = 174 bits (374), Expect(2) = 8e-047
Identities = 70/152 (46%), Positives = 93/152 (61%)
Frame = +3 / -3
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L++K Y+ P++ PFFP+DL PL P P+VLHP AS + +N IW MYF EL
Sbjct: 537 ETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVEL 358
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNS 362
LP GDDG+Y T D+ACLQ +S+RIH GK+VAE KF+D+ +EY I+ +D +
Sbjct: 357 LPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQDREA 178
Query: 363 LMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLD 458
LM++LTF T+GQ V LD
Sbjct: 177 LMNLLTFENVEAMVQRRVELKTMTYGQEVNLD 82
Score = 33.6 bits (67), Expect(2) = 8e-047
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3 / -3
Query: 489 KVDPKVLSKLYDQWVMPLT 545
K+ P +++ LY QWVMPLT
Sbjct: 57 KIQPSLIAGLYAQWVMPLT 1
>gb|BX253798.1|BX253798 BX253798 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP088F04, mRNA sequence
Length = 660
Score = 175 bits (376), Expect(2) = 2e-046
Identities = 71/155 (45%), Positives = 94/155 (60%)
Frame = +3 / +2
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L++K Y+ P++ PFFP+DL PL P P+VLHP AS + +N IW MYF EL
Sbjct: 125 ETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVEL 304
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNS 362
LP GDDG+Y T D+ACLQ +S+RIH GK+VAE KF+D+ +EY I+ +D +
Sbjct: 305 LPRIAAMGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQDGEA 484
Query: 363 LMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLDDNA 467
LM++LTF T+GQ V LD A
Sbjct: 485 LMNLLTFENVEAMVQRRVELKTMTYGQEVNLDGAA 589
Score = 31.3 bits (62), Expect(2) = 2e-046
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3 / +2
Query: 489 KVDPKVLSKLYDQWVMPL 542
K+ P +++ LY QWVMPL
Sbjct: 605 KIQPSLIAGLYAQWVMPL 658
>gb|BG317820.1|BG317820 NXPV_006_B01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_006_B01 5' similar to Arabidopsis
thaliana sequence At1g69370 chorismate mutase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 600
Score = 164 bits (353), Expect(2) = 1e-045
Identities = 67/152 (44%), Positives = 86/152 (56%)
Frame = +3 / +3
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L+AK Y+ P++ PFFP LP PL P P VLHP A + +N IW MY+D L
Sbjct: 39 ETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYDSL 218
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNS 362
LP F GDDG+Y T D CLQ LS+RIH GK+VAE KF+ +P+ Y I+ +D
Sbjct: 219 LPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYGKFVAEAKFRGSPELYEVAIRAQDKEQ 398
Query: 363 LMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLD 458
LM++LTF +G +LD
Sbjct: 399 LMNLLTFESVETAVQRRVXQKAKAYGLXXSLD 494
Score = 39.1 bits (79), Expect(2) = 1e-045
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3 / +3
Query: 462 NATAGDSECKVDPKVLSKLYDQWVMPLTKDVEVEYL 569
+ T DS K+ P + L W+MPLTK EYL
Sbjct: 492 DTTXADSTYKIQPSLXXXLXXDWIMPLTKMXXXEYL 599
>gb|DR024075.1|DR024075 STRS1_62_C08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_C08_A034 3', mRNA sequence
Length = 763
Score = 135 bits (290), Expect(2) = 7e-043
Identities = 55/117 (47%), Positives = 72/117 (61%)
Frame = +3 / +2
Query: 108 PKVLHPFASLVTVNDAIWKMYFDELLPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGK 287
P+VLHP AS + +N IW MYF ELLP GDDG+Y T D+ACLQ +S+RIH GK
Sbjct: 11 PQVLHPAASNININKEIWTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGK 190
Query: 288 YVAEVKFKDAPQEYSRLIKEKDSNSLMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLD 458
+VAE KF+D+ +EY I+ +D +LM++LTF T+GQ V LD
Sbjct: 191 FVAEAKFRDSSKEYEPAIRAQDREALMNLLTFENVEAMVQRRVELKTMTYGQEVNLD 361
Score = 58.8 bits (122), Expect(2) = 7e-043
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +3 / +2
Query: 489 KVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD* 587
K+ P +++ LY QWVMPLTK V+VEYLLRRLD*
Sbjct: 386 KIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 484
>gb|CO165812.1|CO165812 FLD1_57_F04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_F04_A029 3', mRNA sequence
Length = 527
Score = 163 bits (351), Expect = 1e-039
Identities = 63/127 (49%), Positives = 86/127 (67%)
Frame = +3 / -3
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L+++ Y+ P++ PFFP+DL PL P P+VLHP AS + +N IW MYF EL
Sbjct: 408 ETEKLHSEVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVEL 229
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNS 362
LP GDDG+Y T D+ACLQ +S+RIH GK+VAE KF+D+ +EY I+ +D +
Sbjct: 228 LPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQDREA 49
Query: 363 LMDMLTF 383
LM++LTF
Sbjct: 48 LMNLLTF 28
>gb|DR069285.1|DR069285 RTDK1_6_E03.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_E03_A029 3', mRNA sequence
Length = 879
Score = 162 bits (349), Expect = 2e-039
Identities = 63/127 (49%), Positives = 80/127 (62%)
Frame = +3 / -1
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L+AK Y+ P++ PFFP LP PL P P VLHP A + +N IW MY+D L
Sbjct: 402 ETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYDSL 223
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNS 362
LP F GDDG+Y T D CLQ LS+RIH GK+VAE KF+ +P+ Y I+ +D
Sbjct: 222 LPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYGKFVAEAKFRGSPELYEVAIRAQDKEQ 43
Query: 363 LMDMLTF 383
LM++LTF
Sbjct: 42 LMNLLTF 22
>gb|DR024213.1|DR024213 STRS1_63_D04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_63_D04_A034 3', mRNA sequence
Length = 778
Score = 122 bits (261), Expect(2) = 7e-039
Identities = 50/110 (45%), Positives = 66/110 (60%)
Frame = +3 / +3
Query: 129 ASLVTVNDAIWKMYFDELLPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKF 308
AS + +N IW MYF ELLP GDDG+Y T D+ACLQ +S+RIH GK+VAE KF
Sbjct: 3 ASNININKEIWTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKF 182
Query: 309 KDAPQEYSRLIKEKDSNSLMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLD 458
+D+ +EY I+ +D +LM++LTF T+GQ V LD
Sbjct: 183 RDSSKEYELAIRAQDREALMNLLTFENVEAMVQRRVELKTMTYGQEVNLD 332
Score = 58.8 bits (122), Expect(2) = 7e-039
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +3 / +3
Query: 489 KVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD* 587
K+ P +++ LY QWVMPLTK V+VEYLLRRLD*
Sbjct: 357 KIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 455
>gb|DR024254.1|DR024254 STRS1_63_D04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_63_D04_A034 5', mRNA sequence
Length = 749
Score = 149 bits (319), Expect = 3e-035
Identities = 57/114 (50%), Positives = 76/114 (66%)
Frame = +3 / +3
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L++K Y+ P++ PFFP+DL PL P P+VLHP AS + +N IW MYF EL
Sbjct: 408 ETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVEL 587
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIK 344
LP GDDG+Y T D+ACLQ +S++IH GK+VAE KF+D+ +EY I+
Sbjct: 588 LPRIAAVGDDGNYGSTAVCDVACLQAISRKIHYGKFVAEAKFRDSSKEYELAIR 749
>gb|CO165868.1|CO165868 FLD1_57_E04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_E04_A029 5', mRNA sequence
Length = 877
Score = 109 bits (232), Expect(2) = 6e-035
Identities = 45/98 (45%), Positives = 59/98 (60%)
Frame = +3 / -2
Query: 165 MYFDELLPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIK 344
MYF ELLP GDDG+Y T D+ACLQ +S+RIH GK+VAE KF+D+ +EY I+
Sbjct: 873 MYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIR 694
Query: 345 EKDSNSLMDMLTFXXXXXXXXXXXXXXXXTFGQNVTLD 458
+D +LM++LTF T+GQ V LD
Sbjct: 693 AQDREALMNLLTFENVEAMVQRRVELKTMTYGQEVNLD 580
Score = 58.8 bits (122), Expect(2) = 6e-035
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +3 / -2
Query: 489 KVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD* 587
K+ P +++ LY QWVMPLTK V+VEYLLRRLD*
Sbjct: 555 KIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 457
>gb|DR685785.1|DR685785 EST1075862 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB785 3' end, mRNA sequence
Length = 784
Score = 147 bits (316), Expect = 8e-035
Identities = 57/114 (50%), Positives = 71/114 (62%)
Frame = +3 / +2
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L+AK Y+ P++ PFFP LP PL P P VLHP A + +N IW MY+D L
Sbjct: 404 ETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYDSL 583
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIK 344
LP F GDDG+Y T D CLQ LS+RIH GK+VAE KF+ +P+ Y I+
Sbjct: 584 LPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYGKFVAEAKFRGSPELYEVAIR 745
>gb|DT632919.1|DT632919 EST1147850 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFP19 3' end, mRNA sequence
Length = 791
Score = 147 bits (316), Expect = 8e-035
Identities = 57/114 (50%), Positives = 71/114 (62%)
Frame = +3 / +1
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L+AK Y+ P++ PFFP LP PL P P VLHP A + +N IW MY+D L
Sbjct: 412 ETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYDSL 591
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIK 344
LP F GDDG+Y T D CLQ LS+RIH GK+VAE KF+ +P+ Y I+
Sbjct: 592 LPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYGKFVAEAKFRGSPELYEVAIR 753
>gb|CO162312.1|CO162312 FLD1_34_B10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_B10_A029 5', mRNA sequence
Length = 827
Score = 146 bits (314), Expect = 2e-034
Identities = 56/109 (51%), Positives = 69/109 (63%)
Frame = +3 / +3
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L+AK Y+ P++ PFFP LP PL P P VLHP A + +N IW MY+D L
Sbjct: 489 ETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYDSL 668
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEY 329
LP F GDDG+Y T D CLQ LS+RIH GK+VAE KF+ +P+ Y
Sbjct: 669 LPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYGKFVAEAKFRGSPELY 815
>gb|DR095848.1|DR095848 STRR1_24_B06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_24_B06_A033 3', mRNA sequence
Length = 779
Score = 134 bits (288), Expect = 6e-031
Identities = 52/99 (52%), Positives = 62/99 (62%)
Frame = +3 / -1
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L+AK Y+ P++ PFFP LP PL P P VLHP A + +N IW MY+D L
Sbjct: 302 ETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYDSL 123
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAE 299
LP F GDDG+Y T D CLQ LS+RIH GK+VAE
Sbjct: 122 LPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYGKFVAE 6
>gb|CO364393.1|CO364393 RTK1_15_A08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_A08_A029 5', mRNA sequence
Length = 866
Score = 95.5 bits (202), Expect(2) = 8e-031
Identities = 38/85 (44%), Positives = 52/85 (61%)
Frame = +3 / -3
Query: 204 GDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNSLMDMLTF 383
GDDG+Y T D+ACLQ +S+RIH GK+VAE KF+D+ +EY I+ +D +LM++LTF
Sbjct: 852 GDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQDREALMNLLTF 673
Query: 384 XXXXXXXXXXXXXXXXTFGQNVTLD 458
T+GQ V LD
Sbjct: 672 ENVEAMVQRRVELKTMTYGQEVNLD 598
Score = 58.8 bits (122), Expect(2) = 8e-031
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +3 / -3
Query: 489 KVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD* 587
K+ P +++ LY QWVMPLTK V+VEYLLRRLD*
Sbjct: 573 KIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 475
>gb|DR025587.1|DR025587 STRS1_72_B09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_72_B09_A034 5', mRNA sequence
Length = 698
Score = 95.5 bits (202), Expect(2) = 8e-031
Identities = 38/85 (44%), Positives = 52/85 (61%)
Frame = +3 / -2
Query: 204 GDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNSLMDMLTF 383
GDDG+Y T D+ACLQ +S+RIH GK+VAE KF+D+ +EY I+ +D +LM++LTF
Sbjct: 682 GDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQDREALMNLLTF 503
Query: 384 XXXXXXXXXXXXXXXXTFGQNVTLD 458
T+GQ V LD
Sbjct: 502 ENVEAMVQRRVELKTMTYGQEVNLD 428
Score = 58.8 bits (122), Expect(2) = 8e-031
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +3 / -2
Query: 489 KVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD* 587
K+ P +++ LY QWVMPLTK V+VEYLLRRLD*
Sbjct: 403 KIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 305
>gb|CF667838.1|CF667838 RTCNT1_32_G06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_32_G06_A029 5', mRNA sequence
Length = 781
Score = 115 bits (245), Expect(2) = 4e-030
Identities = 44/89 (49%), Positives = 53/89 (59%)
Frame = +3 / +3
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L+AK Y+ P++ PFFP LP PL P P VLHP A + +N IW MY+D L
Sbjct: 444 ETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYDSL 623
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQ 269
LP F GDDG+Y T D CLQ LS+
Sbjct: 624 LPRFATTGDDGNYGSTAVCDTMCLQALSK 710
Score = 36.8 bits (74), Expect(2) = 4e-030
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3 / +2
Query: 267 QRIHIGKYVAEVKFKDAPQEY 329
QRIH GK+VAE KF+ +P+ Y
Sbjct: 707 QRIHYGKFVAEAKFRGSPELY 769
>gb|DR069348.1|DR069348 RTDK1_6_E03.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_E03_A029 5', mRNA sequence
Length = 874
Score = 85.8 bits (181), Expect(2) = 6e-029
Identities = 35/85 (41%), Positives = 47/85 (55%)
Frame = +3 / -2
Query: 204 GDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNSLMDMLTF 383
GDDG+Y T D CLQ LS+RIH GK+VAE KF+ +P+ Y I+ +D LM++LTF
Sbjct: 867 GDDGNYGSTAVCDTMCLQALSKRIHYGKFVAEAKFRGSPELYEVAIRAQDKEQLMNLLTF 688
Query: 384 XXXXXXXXXXXXXXXXTFGQNVTLD 458
+G V+LD
Sbjct: 687 ESVETAVQRRVEQKAKAYGLEVSLD 613
Score = 62.0 bits (129), Expect(2) = 6e-029
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = +3 / -2
Query: 462 NATAGDSECKVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD* 587
+ T DS K+ P +++ LY W+MPLTK V+VEYLLRRLD*
Sbjct: 615 DTTKADSTYKIQPSLIANLYGDWIMPLTKMVQVEYLLRRLD* 490
>gb|BQ701847.1|BQ701847 NXSI_121_C04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_121_C04 5' similar to Arabidopsis thaliana
sequence At3g29200 chorismate mutase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 551
Score = 124 bits (266), Expect = 7e-028
Identities = 50/114 (43%), Positives = 64/114 (56%)
Frame = +3 / +3
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L+AK Y+ P++ PFFP LP PL P P VLHP A + +N IW MY+D L
Sbjct: 204 ETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYDSL 383
Query: 183 LPLFTVDGDDGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIK 344
L GDDG+Y T D LS+ H GK+VAE KF+ +P+ Y I+
Sbjct: 384 LXXXAXTGDDGNYGSTAVCDTMXXXXLSKXXHYGKFVAEAKFRXSPELYEVAIR 545
>gb|DR025125.1|DR025125 STRS1_69_F02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_69_F02_A034 5', mRNA sequence
Length = 695
Score = 80.3 bits (169), Expect(2) = 3e-027
Identities = 33/83 (39%), Positives = 45/83 (54%)
Frame = +3 / +2
Query: 210 DGSYAQTVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNSLMDMLTFXX 389
DG+Y T D CLQ LS+RIH GK+VAE KF+ +P+ Y I+ +D LM++LTF
Sbjct: 2 DGNYGSTAVCDTMCLQALSKRIHYGKFVAEAKFRGSPELYEVAIRAQDKEQLMNLLTFES 181
Query: 390 XXXXXXXXXXXXXXTFGQNVTLD 458
+G V+LD
Sbjct: 182 VETAVQRRVEQKAKAYGLEVSLD 250
Score = 62.0 bits (129), Expect(2) = 3e-027
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = +3 / +2
Query: 462 NATAGDSECKVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD* 587
+ T DS K+ P +++ LY W+MPLTK V+VEYLLRRLD*
Sbjct: 248 DTTKADSTYKIQPSLIANLYGDWIMPLTKMVQVEYLLRRLD* 373
>gb|DR165633.1|DR165633 RTPHOS1_6_H02.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_6_H02_A029 3', mRNA sequence
Length = 929
Score = 80.8 bits (170), Expect(2) = 2e-026
Identities = 33/77 (42%), Positives = 46/77 (59%)
Frame = +3 / +1
Query: 228 TVALDLACLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNSLMDMLTFXXXXXXXX 407
T D+ACLQ +S+RIH GK+VAE KF+D+ +EY I+ +D +LM++LTF
Sbjct: 1 TAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQDREALMNLLTFENVEAMVQ 180
Query: 408 XXXXXXXXTFGQNVTLD 458
T+GQ V LD
Sbjct: 181 RRVELKTMTYGQEVNLD 231
Score = 58.8 bits (122), Expect(2) = 2e-026
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +3 / +1
Query: 489 KVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD* 587
K+ P +++ LY QWVMPLTK V+VEYLLRRLD*
Sbjct: 256 KIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 354
>gb|CO170146.1|CO170146 NDL1_12_B03.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_12_B03_A029 3', mRNA sequence
Length = 454
Score = 67.5 bits (141), Expect(2) = 2e-023
Identities = 28/70 (40%), Positives = 39/70 (55%)
Frame = +3 / +1
Query: 249 CLQVLSQRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNSLMDMLTFXXXXXXXXXXXXXXX 428
CLQ LS+RIH GK+VAE KF+ +P+ Y I+ +D LM++LTF
Sbjct: 7 CLQALSKRIHYGKFVAEAKFRGSPELYEVAIRAQDKEQLMNLLTFESVETAVQRRVEQKA 186
Query: 429 XTFGQNVTLD 458
+G V+LD
Sbjct: 187 KAYGLEVSLD 216
Score = 61.6 bits (128), Expect(2) = 2e-023
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +3 / +1
Query: 468 TAGDSECKVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD* 587
T DS K+ P +++ LY W+MPLTK V+VEYLLRRLD*
Sbjct: 220 TKADSTYKIQPSLIANLYGDWIMPLTKMVQVEYLLRRLD* 339
>gb|DR054830.1|DR054830 RTCA1_19_G05.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_G05_A029 5', mRNA sequence
Length = 701
Score = 109 bits (232), Expect = 3e-023
Identities = 42/84 (50%), Positives = 53/84 (63%)
Frame = +3 / +2
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L++K Y+ P++ PFFP+DL PL P P+VLHP AS + +N IW MYF EL
Sbjct: 449 ETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVEL 628
Query: 183 LPLFTVDGDDGSYAQTVALDLACL 254
LP GDDG+Y T D+ACL
Sbjct: 629 LPRIAAVGDDGNYGSTAVCDVACL 700
>gb|CO197205.1|CO197205 GEO1_4_C10.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_4_C10_A029 5', mRNA sequence
Length = 772
Score = 108 bits (231), Expect = 4e-023
Identities = 41/84 (48%), Positives = 49/84 (58%)
Frame = +3 / +2
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L+AK Y+ P++ PFFP LP PL P P VLHP A + +N IW MY+D L
Sbjct: 521 ETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYDSL 700
Query: 183 LPLFTVDGDDGSYAQTVALDLACL 254
LP F GDDG+Y T D CL
Sbjct: 701 LPRFATTGDDGNYGSTAVCDTMCL 772
>gb|AI813035.1|AI813035 20A4 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 526
Score = 103 bits (220), Expect = 1e-021
Identities = 39/80 (48%), Positives = 47/80 (58%)
Frame = +3 / +1
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L+AK Y+ P++ PFFP LP PL P P VLHP A + +N IW MY+D L
Sbjct: 286 ETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYDSL 465
Query: 183 LPLFTVDGDDGSYAQTVALD 242
LP F GDDG+Y T D
Sbjct: 466 LPRFATTGDDGNYGSTAVCD 525
>gb|DR165931.1|DR165931 RTPHOS1_8_F02.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_8_F02_A029 3', mRNA sequence
Length = 885
Score = 62.9 bits (131), Expect(2) = 4e-021
Identities = 26/64 (40%), Positives = 37/64 (57%)
Frame = +3 / +1
Query: 267 QRIHIGKYVAEVKFKDAPQEYSRLIKEKDSNSLMDMLTFXXXXXXXXXXXXXXXXTFGQN 446
+RIH GK+VAE KF+D+ +EY I+ +D +LM++LTF T+GQ
Sbjct: 1 RRIHYGKFVAEAKFRDSSKEYEPAIRAQDREALMNLLTFENVEAMVQRRVELKTMTYGQE 180
Query: 447 VTLD 458
V LD
Sbjct: 181 VNLD 192
Score = 58.8 bits (122), Expect(2) = 4e-021
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +3 / +1
Query: 489 KVDPKVLSKLYDQWVMPLTKDVEVEYLLRRLD* 587
K+ P +++ LY QWVMPLTK V+VEYLLRRLD*
Sbjct: 217 KIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 315
>gb|CO366854.1|CO366854 RTK1_30_C03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_30_C03_A029 5', mRNA sequence
Length = 837
Score = 100 bits (214), Expect = 1e-020
Identities = 39/80 (48%), Positives = 49/80 (61%)
Frame = +3 / +3
Query: 3 EAEALNAKAXHYQKPEDVPFFPQDLPSPLFPTKPSPKVLHPFASLVTVNDAIWKMYFDEL 182
E E L++K Y+ P++ PFFP+DL PL P P+VLHP AS + +N IW MYF EL
Sbjct: 597 ETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVEL 776
Query: 183 LPLFTVDGDDGSYAQTVALD 242
LP GDDG+Y T D
Sbjct: 777 LPRIAAVGDDGNYGSTAVCD 836
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 447,643,301
Number of Sequences: 355925
Number of extensions: 6615385
Number of successful extensions: 44410
Number of sequences better than 1.0e-020: 37
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 12131470125
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)