TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3042568.2.1
(1174 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF394902.1|CF394902 RTDS2_8_B01.b1_A021 Drought-stressed... 203 2e-051
gb|DR117586.1|DR117586 RTMG1_7_G10.g1_A029 Roots minus magn... 126 6e-051
gb|AI812992.1|AI812992 2E10 Pine Lambda Zap Xylem library P... 150 1e-050
gb|DR048150.1|DR048150 RTBOR1_6_H10.g2_A029 Roots plus adde... 188 9e-047
gb|CO159016.1|CO159016 FLD1_10_F07.g1_A029 Root flooded Pin... 153 1e-046
gb|DR060360.1|DR060360 RTNIT1_27_G11.b1_A029 Roots minus ni... 185 4e-046
gb|CF397463.1|CF397463 RTDS3_3_G03.g1_A022 Drought-stressed... 138 4e-044
gb|DR117496.1|DR117496 RTMG1_7_G10.b1_A029 Roots minus magn... 126 8e-037
gb|DR071603.1|DR071603 RTDK1_21_A05.b1_A029 Roots, dark Pin... 148 7e-035
gb|DR386081.1|DR386081 RTHG1_12_G05.g1_A029 Roots plus adde... 148 7e-035
gb|DR071679.1|DR071679 RTDK1_21_A05.g1_A029 Roots, dark Pin... 112 2e-034
gb|BG317521.1|BG317521 NXPV_002_G06_F NXPV (Nsf Xylem Plani... 146 3e-034
gb|BX678794.1|BX678794 BX678794 RS Pinus pinaster cDNA clon... 145 4e-034
gb|CO158939.1|CO158939 FLD1_10_F07.b1_A029 Root flooded Pin... 142 6e-033
gb|BQ702231.1|BQ702231 NXSI_126_D06_F NXSI (Nsf Xylem Side ... 141 1e-032
gb|BX678600.1|BX678600 BX678600 RS Pinus pinaster cDNA clon... 141 1e-032
gb|AL750522.1|AL750522 AL750522 RN Pinus pinaster cDNA clon... 93 7e-032
gb|CO167598.1|CO167598 FLD1_70_A08.b1_A029 Root flooded Pin... 138 7e-032
gb|CO167675.1|CO167675 FLD1_70_A08.g1_A029 Root flooded Pin... 138 7e-032
gb|DR020869.1|DR020869 STRS1_39_G06.g1_A034 Shoot tip pitch... 138 7e-032
gb|DR060520.1|DR060520 RTNIT1_28_H03.b1_A029 Roots minus ni... 138 7e-032
gb|DR386010.1|DR386010 RTHG1_12_G05.b1_A029 Roots plus adde... 136 4e-031
gb|AW011545.1|AW011545 ST22A12 Pine TriplEx shoot tip libra... 106 4e-031
gb|BF221028.1|BF221028 NXCI_162_C02_F NXCI (Nsf Xylem Compr... 126 4e-028
gb|BF049746.1|BF049746 NXCI_106_F09_F NXCI (Nsf Xylem Compr... 104 1e-021
gb|BF516675.1|BF516675 NXSI_002_B01_F NXSI (Nsf Xylem Side ... 103 2e-021
>gb|CF394902.1|CF394902 RTDS2_8_B01.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_8_B01_A021 3', mRNA sequence
Length = 559
Score = 203 bits (438), Expect = 2e-051
Identities = 75/99 (75%), Positives = 94/99 (94%)
Frame = -1 / +3
Query: 532 RDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIAICS 353
+DVFASILAF+PTGWGI+ +A+AWKP+VK+LGLWK++R+L RLYDAGMGM++FIP+A+CS
Sbjct: 3 KDVFASILAFIPTGWGILCLAIAWKPIVKRLGLWKSIRSLGRLYDAGMGMIVFIPVALCS 182
Query: 352 WFPFISTFQTRLLFNQAFSRGLEISLILAGNNPNAGI*W 236
W PF+STFQTRL+FNQAFSRGLEISLILAGN PN+ +*+
Sbjct: 183 WLPFVSTFQTRLMFNQAFSRGLEISLILAGNKPNSEL*F 299
Score = 121 bits (259), Expect = 9e-027
Identities = 55/93 (59%), Positives = 59/93 (63%)
Frame = +3 / -1
Query: 252 FGLLPARIRDISKPLLNAWLNRSRVWKVDMNGNHEQMAMGMKMTIPIPASXXXXXXXTVF 431
FGL PARIR+IS P L A LN RV VD GNHE A GM +PIPAS F
Sbjct: 283 FGLFPARIREISNPRLKA*LNIRRV*NVDTKGNHEHSATGMNTIMPIPASYRRPSERIDF 104
Query: 432 HKPNFFTTGFHAMAIEMIPHPVGTNARMEAKTS 530
H P+ FT GFHA+A IPHPVG NARM AKTS
Sbjct: 103 HNPSLFTIGFHAIARHKIPHPVGMNARMLAKTS 5
>gb|DR117586.1|DR117586 RTMG1_7_G10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_G10_A029 5', mRNA sequence
Length = 763
Score = 126 bits (269), Expect(3) = 6e-051
Identities = 50/99 (50%), Positives = 69/99 (69%)
Frame = -1 / +3
Query: 547 TKLSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIP 368
T L D+ S+LA +PTGWG+ISIA +P+++ +W+ V A+ARLY+ G++I IP
Sbjct: 453 TNLKFIDLITSVLALMPTGWGLISIAQVLRPLLQPTMVWEIVVAVARLYEMIFGIIIMIP 632
Query: 367 IAICSWFPFISTFQTRLLFNQAFSRGLEISLILAGNNPN 251
+A+ SW P T QTR+LFN+AFSRGL+IS IL G N
Sbjct: 633 VALLSWLPGFQTLQTRILFNEAFSRGLQISRILVGKKTN 749
Score = 67.5 bits (141), Expect(3) = 6e-051
Identities = 21/38 (55%), Positives = 29/38 (76%)
Frame = -1 / +3
Query: 994 MALSWLFAPYLFNPSGFEWQKIVEDFRDWTNWLFYRGG 881
+ SW AP++FNPSGF+W K V DF D+ NW++Y+GG
Sbjct: 6 LVFSWTMAPFIFNPSGFDWLKAVYDFDDFMNWIWYKGG 119
Score = 51.9 bits (107), Expect(3) = 6e-051
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = -1 / +3
Query: 826 HIYSIRGRILETILSLRFFIFQFGVVYHMNASGGSTALLVYWISW 692
H I G++LE ++ +RF Q+G+VY + + S ++LVY +SW
Sbjct: 171 HSTGIWGKVLEILIDIRFLFLQYGIVYQLRIANNSKSILVYLLSW 305
>gb|AI812992.1|AI812992 2E10 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 675
Score = 150 bits (322), Expect(3) = 1e-050
Identities = 59/93 (63%), Positives = 76/93 (81%)
Frame = -1 / +1
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
++VRD+FA ILAF+PTGW I+ IA KP V ++G W +VRALAR Y+ MG+++F P+A
Sbjct: 394 MTVRDLFACILAFMPTGWAILQIAQTCKPFVHRIGFWGSVRALARGYEFIMGLLLFAPVA 573
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+ +WFPF+S FQTRLLFNQAFSRGL+IS ILAG
Sbjct: 574 VLAWFPFVSEFQTRLLFNQAFSRGLQISRILAG 672
Score = 62.9 bits (131), Expect(3) = 1e-050
Identities = 21/41 (51%), Positives = 34/41 (82%)
Frame = -1 / +1
Query: 814 IRGRILETILSLRFFIFQFGVVYHMNASGGSTALLVYWISW 692
+RG++ E +LSLRFF++Q+G+VYH+N +G ++LVY +SW
Sbjct: 118 LRGQLCEILLSLRFFLYQYGLVYHLNITGTHKSVLVYGLSW 240
Score = 30.9 bits (61), Expect(3) = 1e-050
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1 / +1
Query: 922 DFRDWTNWLFYRGGIGV 872
D+ DW W+ RGGIGV
Sbjct: 4 DWPDWNKWINNRGGIGV 54
>gb|DR048150.1|DR048150 RTBOR1_6_H10.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_6_H10_A029 5', mRNA sequence
Length = 691
Score = 188 bits (404), Expect = 9e-047
Identities = 76/101 (75%), Positives = 88/101 (87%)
Frame = -1 / -2
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
L+V D+FASILAFVPTGW II +A+ WK VVK LGLWK+V A+AR YDAGMG+++FIPI
Sbjct: 624 LTVTDLFASILAFVPTGWLIICLAITWKSVVKSLGLWKSVSAIARFYDAGMGILLFIPIV 445
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAGNNPNAGI* 239
+ SWFPF+STFQTRLLFNQAFSRGLEISLILAGN PN +*
Sbjct: 444 VLSWFPFVSTFQTRLLFNQAFSRGLEISLILAGNKPNVQL* 322
Score = 122 bits (261), Expect = 5e-027
Identities = 51/97 (52%), Positives = 64/97 (65%)
Frame = +3 / +2
Query: 252 FGLLPARIRDISKPLLNAWLNRSRVWKVDMNGNHEQMAMGMKMTIPIPASXXXXXXXTVF 431
FGL PAR+R+IS P L A LNR RVW VD GNH+ +G+ IP+PAS T F
Sbjct: 335 FGLFPARMREISSPRLKA*LNRRRVWNVDTKGNHDNTTIGINRRIPMPAS*NLAIAETDF 514
Query: 432 HKPNFFTTGFHAMAIEMIPHPVGTNARMEAKTSLTLS 542
HKP FTT FH +A +I PVGTNA++ AK S+T++
Sbjct: 515 HKPRLFTTDFHVIARHIISQPVGTNAKILAKRSVTVN 625
>gb|CO159016.1|CO159016 FLD1_10_F07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_F07_A029 5', mRNA sequence
Length = 796
Score = 153 bits (328), Expect(2) = 1e-046
Identities = 58/94 (61%), Positives = 71/94 (75%)
Frame = -1 / +3
Query: 1153 VRHIKFAENYRIYSRSHFVKGMEVALLLVIFLAYGFNNGGAVGYILLSISSWIMALSWLF 974
V H KFAENYR YSRSHFVKG+E+ LLL+++ Y + V YIL++ S W M +WLF
Sbjct: 165 VFHAKFAENYRFYSRSHFVKGLELMLLLIVYTVYSQAHRKTVPYILITYSMWFMVGAWLF 344
Query: 973 APYLFNPSGFEWQKIVEDFRDWTNWLFYRGGIGV 872
AP+LFNPSGFEWQKIV+D+ DW W+ RGGIGV
Sbjct: 345 APFLFNPSGFEWQKIVDDWTDWNKWINNRGGIGV 446
Score = 54.7 bits (113), Expect(2) = 1e-046
Identities = 19/41 (46%), Positives = 30/41 (73%)
Frame = -1 / +3
Query: 814 IRGRILETILSLRFFIFQFGVVYHMNASGGSTALLVYWISW 692
+R RI E +LS RF ++Q+G+VYH+N + ++LVY +SW
Sbjct: 510 LRARIFEILLSFRFLLYQYGLVYHLNIAHEHRSVLVYALSW 632
>gb|DR060360.1|DR060360 RTNIT1_27_G11.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_27_G11_A029 3', mRNA sequence
Length = 569
Score = 185 bits (399), Expect = 4e-046
Identities = 67/91 (73%), Positives = 85/91 (93%)
Frame = -1 / +2
Query: 508 AFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIAICSWFPFISTF 329
AF+PTGWGI+ + +AWKP+VK+LGLWK++R+L RLYDAGMGM++FIP+A+CSW PF+STF
Sbjct: 2 AFIPTGWGILCLGIAWKPIVKRLGLWKSIRSLGRLYDAGMGMIVFIPVAMCSWLPFVSTF 181
Query: 328 QTRLLFNQAFSRGLEISLILAGNNPNAGI*W 236
QTRL+FNQAFSRGLEISLILAGN PN+ +*+
Sbjct: 182 QTRLMFNQAFSRGLEISLILAGNKPNSEL*F 274
Score = 108 bits (231), Expect = 7e-023
Identities = 48/86 (55%), Positives = 53/86 (61%)
Frame = +3 / -3
Query: 252 FGLLPARIRDISKPLLNAWLNRSRVWKVDMNGNHEQMAMGMKMTIPIPASXXXXXXXTVF 431
FGL PARIR+IS P L A LN RV VD GNHE +A GM +PIPAS F
Sbjct: 258 FGLFPARIREISNPRLKA*LNIRRV*NVDTKGNHEHIATGMNTIMPIPASYRRPSERIDF 79
Query: 432 HKPNFFTTGFHAMAIEMIPHPVGTNA 509
H P+ FT GFHA+ IPHPVG NA
Sbjct: 78 HNPSLFTIGFHAIPRHKIPHPVGMNA 1
>gb|CF397463.1|CF397463 RTDS3_3_G03.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_3_G03_A022 5', mRNA sequence
Length = 773
Score = 138 bits (296), Expect(2) = 4e-044
Identities = 55/93 (59%), Positives = 74/93 (79%)
Frame = -1 / +2
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
L+V D+FA LAF+PTGW ++ IA A +P+ + G ++VR+LAR Y+ MG+++F P+A
Sbjct: 332 LTVADLFACFLAFMPTGWALLQIAQACRPLYNRTGFLESVRSLARGYEYIMGLLLFTPVA 511
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
I +WFPF+S FQTRLLFNQAFSRGL+IS ILAG
Sbjct: 512 ILAWFPFVSEFQTRLLFNQAFSRGLQISRILAG 610
Score = 63.8 bits (133), Expect(2) = 4e-044
Identities = 22/41 (53%), Positives = 34/41 (82%)
Frame = -1 / +2
Query: 814 IRGRILETILSLRFFIFQFGVVYHMNASGGSTALLVYWISW 692
+RGRI E +LSLRFF++Q+G+VYH+N + + ++LVY +SW
Sbjct: 56 LRGRIWEILLSLRFFLYQYGIVYHLNITHDNKSVLVYGLSW 178
>gb|DR117496.1|DR117496 RTMG1_7_G10.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_G10_A029 3', mRNA sequence
Length = 872
Score = 126 bits (269), Expect(2) = 8e-037
Identities = 50/99 (50%), Positives = 69/99 (69%)
Frame = -1 / +2
Query: 547 TKLSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIP 368
T L D+ S+LA +PTGWG+ISIA +P+++ +W+ V A+ARLY+ G++I IP
Sbjct: 320 TNLKFIDLITSVLALMPTGWGLISIAQVLRPLLQPTMVWEIVVAVARLYEMIFGIIIMIP 499
Query: 367 IAICSWFPFISTFQTRLLFNQAFSRGLEISLILAGNNPN 251
+A+ SW P T QTR+LFN+AFSRGL+IS IL G N
Sbjct: 500 VALLSWLPGFQTLQTRILFNEAFSRGLQISRILVGKKTN 616
Score = 51.9 bits (107), Expect(2) = 8e-037
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = -1 / +2
Query: 826 HIYSIRGRILETILSLRFFIFQFGVVYHMNASGGSTALLVYWISW 692
H I G++LE ++ +RF Q+G+VY + + S ++LVY +SW
Sbjct: 38 HSTGIWGKVLEILIDIRFLFLQYGIVYQLRIANNSKSILVYLLSW 172
>gb|DR071603.1|DR071603 RTDK1_21_A05.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_21_A05_A029 3', mRNA sequence
Length = 769
Score = 148 bits (318), Expect = 7e-035
Identities = 57/93 (61%), Positives = 75/93 (80%)
Frame = -1 / +1
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
L++ D+FA LAF+PTGW + IA+A +P++++ G W +VRALAR YD MG+V+F P+A
Sbjct: 115 LTISDLFACFLAFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVA 294
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
I +WFPF+S FQTR LFNQAFSRGL+IS ILAG
Sbjct: 295 ILAWFPFVSEFQTRFLFNQAFSRGLQISRILAG 393
>gb|DR386081.1|DR386081 RTHG1_12_G05.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_12_G05_A029 5', mRNA sequence
Length = 804
Score = 148 bits (318), Expect = 7e-035
Identities = 57/93 (61%), Positives = 75/93 (80%)
Frame = -1 / +1
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
L++ D+FA LAF+PTGW + IA+A +P++++ G W +VRALAR YD MG+V+F P+A
Sbjct: 112 LTISDLFACFLAFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVA 291
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
I +WFPF+S FQTR LFNQAFSRGL+IS ILAG
Sbjct: 292 ILAWFPFVSEFQTRFLFNQAFSRGLQISRILAG 390
>gb|DR071679.1|DR071679 RTDK1_21_A05.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_21_A05_A029 5', mRNA sequence
Length = 607
Score = 112 bits (239), Expect(2) = 2e-034
Identities = 41/74 (55%), Positives = 54/74 (72%)
Frame = -1 / +1
Query: 1093 GMEVALLLVIFLAYGFNNGGAVGYILLSISSWIMALSWLFAPYLFNPSGFEWQKIVEDFR 914
G+E+ LLL+++ Y + V YIL++ S W M +WLFAP+LFNPSGFEWQKIV+D+
Sbjct: 1 GLELMLLLIVYTVYSQAHRKTVPYILITYSMWFMVGAWLFAPFLFNPSGFEWQKIVDDWT 180
Query: 913 DWTNWLFYRGGIGV 872
DW W+ RGGIGV
Sbjct: 181 DWNKWINNRGGIGV 222
Score = 54.7 bits (113), Expect(2) = 2e-034
Identities = 19/41 (46%), Positives = 30/41 (73%)
Frame = -1 / +1
Query: 814 IRGRILETILSLRFFIFQFGVVYHMNASGGSTALLVYWISW 692
+R RI E +LS RF ++Q+G+VYH+N + ++LVY +SW
Sbjct: 286 LRARIFEILLSFRFLLYQYGLVYHLNIAHEHRSVLVYALSW 408
>gb|BG317521.1|BG317521 NXPV_002_G06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_002_G06 5' similar to Arabidopsis
thaliana sequence At5g13000 callose synthase catalytic
subunit -like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 421
Score = 146 bits (313), Expect = 3e-034
Identities = 54/94 (57%), Positives = 68/94 (72%)
Frame = -1 / +1
Query: 1153 VRHIKFAENYRIYSRSHFVKGMEVALLLVIFLAYGFNNGGAVGYILLSISSWIMALSWLF 974
V H KFA+NYR YSRSHFVKG+E+ LLL+++ YG + Y+L++ S W M +WLF
Sbjct: 100 VFHAKFADNYRFYSRSHFVKGLELMLLLIVYNVYGQPYRNTIAYLLITFSMWFMVGTWLF 279
Query: 973 APYLFNPSGFEWQKIVEDFRDWTNWLFYRGGIGV 872
AP+LFNPSGFEWQKIV+D+ DW W G IGV
Sbjct: 280 APFLFNPSGFEWQKIVDDWTDWNKWXNSHGXIGV 381
>gb|BX678794.1|BX678794 BX678794 RS Pinus pinaster cDNA clone RS15C01, mRNA sequence
Length = 488
Score = 145 bits (312), Expect = 4e-034
Identities = 56/93 (60%), Positives = 74/93 (79%)
Frame = -1 / +2
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
L++ D+FA LAF+PTGW + IA+A +P+++ G W +VRALAR YD MG+++F P+A
Sbjct: 86 LTISDLFACFLAFMPTGWAFLQIALACRPLLQHAGFWDSVRALARSYDYVMGLLLFTPVA 265
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
I +WFPF+S FQTR LFNQAFSRGL+IS ILAG
Sbjct: 266 ILAWFPFVSEFQTRFLFNQAFSRGLQISRILAG 364
>gb|CO158939.1|CO158939 FLD1_10_F07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_F07_A029 3', mRNA sequence
Length = 760
Score = 142 bits (304), Expect = 6e-033
Identities = 55/87 (63%), Positives = 70/87 (80%)
Frame = -1 / +1
Query: 523 FASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIAICSWFP 344
FA LAF+PTGW + IA+A +P++++ G W +VRALAR YD MG+V+F P+AI +WFP
Sbjct: 1 FACFLAFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVAILAWFP 180
Query: 343 FISTFQTRLLFNQAFSRGLEISLILAG 263
F+S FQTR LFNQAFSRGL+IS ILAG
Sbjct: 181 FVSEFQTRFLFNQAFSRGLQISRILAG 261
>gb|BQ702231.1|BQ702231 NXSI_126_D06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_126_D06 5' similar to Arabidopsis thaliana
sequence At3g07160 putative glucan synthase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 513
Score = 141 bits (302), Expect = 1e-032
Identities = 53/69 (76%), Positives = 65/69 (94%)
Frame = -1 / +2
Query: 442 LGLWKTVRALARLYDAGMGMVIFIPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
LGLWK++R+L RLYDAGMGM++FIP+A+CSW PF+STFQTRL+FNQAFSRGLEISLILAG
Sbjct: 2 LGLWKSIRSLGRLYDAGMGMIVFIPVAMCSWLPFVSTFQTRLMFNQAFSRGLEISLILAG 181
Query: 262 NNPNAGI*W 236
N PN+ +*+
Sbjct: 182 NKPNSEL*F 208
>gb|BX678600.1|BX678600 BX678600 RS Pinus pinaster cDNA clone RS11G06, mRNA sequence
Length = 551
Score = 141 bits (302), Expect = 1e-032
Identities = 55/93 (59%), Positives = 72/93 (77%)
Frame = -1 / +3
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
L++ D+FA LAF+PTGW + IA+A +P+++ G W +VRALAR YD MG+++F P+A
Sbjct: 78 LTISDLFACFLAFMPTGWAFLQIALACRPLLQHAGFWDSVRALARSYDYVMGLLLFTPVA 257
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
I +WFPF+S FQTR LFNQAFSRGL S ILAG
Sbjct: 258 ILAWFPFVSEFQTRFLFNQAFSRGLXNSRILAG 356
>gb|AL750522.1|AL750522 AL750522 RN Pinus pinaster cDNA clone RN03D12 similar to GLUCAN
(CALLOSE) SYNTHASE, mRNA sequence
Length = 378
Score = 93.2 bits (197), Expect(2) = 7e-032
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = -1 / +2
Query: 1030 VGYILLSISSWIMALSWLFAPYLFNPSGFEWQKIVEDFRDWTNWLFYRGGIGV 872
+ Y+L++ W M +WLFAP+LFNPSGFEWQKIV+D+ DW W+ GGIGV
Sbjct: 8 IAYLLITFCMWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWNKWINSHGGIGV 166
Score = 65.2 bits (136), Expect(2) = 7e-032
Identities = 23/41 (56%), Positives = 34/41 (82%)
Frame = -1 / +2
Query: 814 IRGRILETILSLRFFIFQFGVVYHMNASGGSTALLVYWISW 692
+RGRI E +LSLRFF++Q+G+VYH+N + S ++LVY +SW
Sbjct: 230 LRGRIWEILLSLRFFLYQYGIVYHLNITHDSKSVLVYGLSW 352
>gb|CO167598.1|CO167598 FLD1_70_A08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_A08_A029 3', mRNA sequence
Length = 820
Score = 138 bits (296), Expect = 7e-032
Identities = 54/93 (58%), Positives = 72/93 (77%)
Frame = -1 / +3
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
L++ D+F LAF+PTGW + IA+A +P+ + GLW +VRALAR Y+ MG+ +F P+A
Sbjct: 45 LTIADLFVCFLAFMPTGWAFLQIALACRPLFECCGLWDSVRALARSYEYVMGLHLFTPVA 224
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
I +WFPF+S FQ+RLLFNQAFSRGL+IS IL G
Sbjct: 225 ILAWFPFVSEFQSRLLFNQAFSRGLQISRILTG 323
>gb|CO167675.1|CO167675 FLD1_70_A08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_A08_A029 5', mRNA sequence
Length = 501
Score = 138 bits (296), Expect = 7e-032
Identities = 54/93 (58%), Positives = 72/93 (77%)
Frame = -1 / +2
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
L++ D+F LAF+PTGW + IA+A +P+ + GLW +VRALAR Y+ MG+ +F P+A
Sbjct: 53 LTIADLFVCFLAFMPTGWAFLQIALACRPLFECCGLWDSVRALARSYEYVMGLHLFTPVA 232
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
I +WFPF+S FQ+RLLFNQAFSRGL+IS IL G
Sbjct: 233 ILAWFPFVSEFQSRLLFNQAFSRGLQISRILTG 331
>gb|DR020869.1|DR020869 STRS1_39_G06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_39_G06_A034 5', mRNA sequence
Length = 683
Score = 138 bits (296), Expect = 7e-032
Identities = 55/93 (59%), Positives = 74/93 (79%)
Frame = -1 / -2
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
L+V D+FA LAF+PTGW ++ IA A +P+ + G ++VR+LAR Y+ MG+++F P+A
Sbjct: 577 LTVADLFACFLAFMPTGWALLQIAQACRPLYNRTGFLESVRSLARGYEYIMGLLLFTPVA 398
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
I +WFPF+S FQTRLLFNQAFSRGL+IS ILAG
Sbjct: 397 ILAWFPFVSEFQTRLLFNQAFSRGLQISRILAG 299
>gb|DR060520.1|DR060520 RTNIT1_28_H03.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_28_H03_A029 3', mRNA sequence
Length = 692
Score = 138 bits (296), Expect = 7e-032
Identities = 55/93 (59%), Positives = 74/93 (79%)
Frame = -1 / +2
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
L+V D+FA LAF+PTGW ++ IA A +P+ + G ++VR+LAR Y+ MG+++F P+A
Sbjct: 5 LTVADLFACFLAFMPTGWALLQIAQACRPLYNRTGFLESVRSLARGYEYIMGLLLFTPVA 184
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
I +WFPF+S FQTRLLFNQAFSRGL+IS ILAG
Sbjct: 185 ILAWFPFVSEFQTRLLFNQAFSRGLQISRILAG 283
>gb|DR386010.1|DR386010 RTHG1_12_G05.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_12_G05_A029 3', mRNA sequence
Length = 806
Score = 136 bits (291), Expect = 4e-031
Identities = 52/82 (63%), Positives = 67/82 (81%)
Frame = -1 / +1
Query: 508 AFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIAICSWFPFISTF 329
AF+PTGW + IA+A +P++++ G W +VRALAR YD MG+V+F P+AI +WFPF+S F
Sbjct: 1 AFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVAILAWFPFVSEF 180
Query: 328 QTRLLFNQAFSRGLEISLILAG 263
QTR LFNQAFSRGL+IS ILAG
Sbjct: 181 QTRFLFNQAFSRGLQISRILAG 246
>gb|AW011545.1|AW011545 ST22A12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST22A12, mRNA sequence
Length = 578
Score = 106 bits (226), Expect(3) = 4e-031
Identities = 42/88 (47%), Positives = 61/88 (69%)
Frame = -1 / +3
Query: 547 TKLSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIP 368
T+L + D+ S+LAFVPTGWG+I IA K + +W+TV A+ARLY+ G+++ IP
Sbjct: 252 TELKLVDLVTSLLAFVPTGWGLILIAQVLKSFLHYNIVWETVIAVARLYEITFGIIVMIP 431
Query: 367 IAICSWFPFISTFQTRLLFNQAFSRGLE 284
+A+ SW P QTR+LFN+AF +GL+
Sbjct: 432 MAVLSWLPGFQATQTRILFNEAFXKGLK 515
Score = 48.3 bits (99), Expect(3) = 4e-031
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -1 / +3
Query: 781 LRFFIFQFGVVYHMNASGGSTALLVYWISW 692
LRFF+FQ+G+ Y + SGGS ++ VY +SW
Sbjct: 15 LRFFVFQYGIGYQLGISGGSKSIAVYLLSW 104
Score = 23.1 bits (44), Expect(3) = 4e-031
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -3 / +1
Query: 284 DISDPCWQQSK 252
+IS PCW++SK
Sbjct: 514 NISYPCWKKSK 546
>gb|BF221028.1|BF221028 NXCI_162_C02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_162_C02 5' similar to Arabidopsis
thaliana sequence At2g31960 glucan synthase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 381
Score = 126 bits (269), Expect = 4e-028
Identities = 50/83 (60%), Positives = 63/83 (75%)
Frame = -1 / +1
Query: 511 LAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIAICSWFPFIST 332
LAF+PTGW I+ IA K V ++G W +VRALAR Y+ MG+++F PIA+ +WFPF+S
Sbjct: 1 LAFMPTGWAILQIAQTCKSFVHRIGFWGSVRALARGYEFIMGLLLFAPIAVLAWFPFVSE 180
Query: 331 FQTRLLFNQAFSRGLEISLILAG 263
FQTRLLFNQ F GL+IS ILAG
Sbjct: 181 FQTRLLFNQXFXXGLQISRILAG 249
>gb|BF049746.1|BF049746 NXCI_106_F09_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_106_F09 5' similar to Arabidopsis
thaliana sequence At2g31960 glucan synthase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 213
Score = 104 bits (222), Expect = 1e-021
Identities = 40/71 (56%), Positives = 52/71 (73%)
Frame = -1 / +1
Query: 511 LAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIAICSWFPFIST 332
LAF+PTGW I+ IA K V ++G W +VRALAR Y+ MG+++F P A+ +WFPF+S
Sbjct: 1 LAFMPTGWAILQIAQTCKXFVHRIGFWGSVRALARGYEFIMGLLLFAPXAVLAWFPFVSE 180
Query: 331 FQTRLLFNQAF 299
FQTRLLFN F
Sbjct: 181 FQTRLLFNXXF 213
>gb|BF516675.1|BF516675 NXSI_002_B01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_002_B01 5' similar to Arabidopsis thaliana
sequence At5g13000 callose synthase catalytic subunit
-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 447
Score = 103 bits (220), Expect = 2e-021
Identities = 40/61 (65%), Positives = 52/61 (85%)
Frame = -1 / +1
Query: 445 KLGLWKTVRALARLYDAGMGMVIFIPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILA 266
++G W +VRALAR Y+ MG+++F P+A+ +WFPF+S FQTRLLFNQAFSRGL+IS ILA
Sbjct: 1 RIGFWGSVRALARGYEFIMGLLLFAPVAVLAWFPFVSEFQTRLLFNQAFSRGLQISRILA 180
Query: 265 G 263
G
Sbjct: 181 G 183
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 691,404,216
Number of Sequences: 355925
Number of extensions: 11279518
Number of successful extensions: 58065
Number of sequences better than 1.0e-020: 34
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 18050299640
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)