TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950225.2.1
(3330 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BD266974.1| Compositions isolated from plant cells and ... 192 e-103
gb|CF399989.1|CF399989 RTWW1_2_C12.g1_A015 Well-watered lob... 138 9e-055
gb|DR081108.1|DR081108 RTFEPL1_27_A10.g1_A029 Roots plus ad... 138 2e-051
gb|CF667932.1|CF667932 RTCNT1_33_H11.b1_A029 Root control P... 137 3e-051
dbj|BD267330.1| Compositions isolated from plant cells and ... 182 7e-049
gb|CF397914.1|CF397914 RTDS3_23_F01.g1_A022 Drought-stresse... 179 8e-044
gb|CO173085.1|CO173085 NDL1_33_H09.g1_A029 Needles control ... 135 4e-038
gb|DR015323.1|DR015323 STRS1_2_G01.g1_A034 Shoot tip pitch ... 112 7e-035
gb|CO198621.1|CO198621 GEO1_15_E06.b1_A029 Root gravitropis... 90 5e-034
gb|DN609482.1|DN609482 EST962532 Subtracted pine embryo lib... 86 2e-029
gb|BF060537.1|BF060537 NXCI_116_D05_F NXCI (Nsf Xylem Compr... 116 2e-028
gb|DT627668.1|DT627668 EST1156417 Subtracted pine embryo li... 62 3e-025
gb|DR693059.1|DR693059 EST1083147 Normalized pine embryo li... 98 1e-024
dbj|BD266968.1| Compositions isolated from plant cells and ... 84 4e-024
>dbj|BD266974.1| Compositions isolated from plant cells and utilization of the same in
modifying plant cell signal transduction
Length = 1489
Score = 192 bits (414), Expect(4) = e-103
Identities = 82/143 (57%), Positives = 98/143 (68%)
Frame = -2 / +1
Query: 1514 AISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSH 1335
A S EDTG+GIPL AQ RVFTPFMQADSSTSR YGGTGIGLSIS+CL ELMGG+I F S
Sbjct: 4 AASTEDTGIGIPLPAQHRVFTPFMQADSSTSRTYGGTGIGLSISRCLIELMGGEIRFISR 183
Query: 1334 PSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKR 1155
P +GSTF+F+A K GD LPT FKGMKA+++DG PV S VT+YHL+R
Sbjct: 184 PGIGSTFSFTALFKVGQAGADGDGDLLRGARLPTHFKGMKALVLDGNPVCSLVTKYHLQR 363
Query: 1154 LGILLQVVNNMNAVVKAFPGQNG 1086
GI + + + + G +G
Sbjct: 364 FGIEVDSITSSKVALSMLNGMDG 432
Score = 138 bits (297), Expect(4) = e-103
Identities = 61/87 (70%), Positives = 68/87 (78%)
Frame = -2 / +2
Query: 791 LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDV 612
L ++L GK+ILVVDDN VN RVAA ALKKYGANV C +SGK AIS+L+ PH F+ACFMDV
Sbjct: 773 LSNVLSGKSILVVDDNIVNRRVAAGALKKYGANVICTDSGKSAISMLRQPHNFNACFMDV 952
Query: 611 QMPEMDGFEATGQIRQMELKANEERKN 531
QMPEMDGFEAT QIR EL E N
Sbjct: 953 QMPEMDGFEATRQIRAAELANMECTSN 1033
Score = 90.0 bits (190), Expect(4) = e-103
Identities = 33/48 (68%), Positives = 44/48 (91%)
Frame = -2 / +2
Query: 509 STTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVS 366
+T +H+P+LAMTADVIQAT+EEC++ GMDGYVSKPF+EEQLY+A++
Sbjct: 1049 ATNNRWHVPILAMTADVIQATHEECLRCGMDGYVSKPFEEEQLYKALA 1192
Score = 80.3 bits (169), Expect(4) = 3e-051
Identities = 39/80 (48%), Positives = 45/80 (56%)
Frame = +1 / -2
Query: 568 LICPVASNPSISGI*TSIKHASKRCGG*SRLIASLPLSTQLTLAPYFXXXXXXXXXXXXX 747
LIC VASNPSISGI TS+KHA K CG S IA PLS Q+TLAPYF
Sbjct: 996 LICRVASNPSISGICTSMKHALKLCGCRSMDIADFPLSVQITLAPYFFSAPAATRRLTML 817
Query: 748 XXXXNIFFPTSKLRRNDGRF 807
++ FP + L R + F
Sbjct: 816 SSTTSMDFPDNTLLRGEEVF 757
Score = 78.5 bits (165), Expect(4) = 3e-051
Identities = 37/79 (46%), Positives = 47/79 (59%)
Frame = +1 / -3
Query: 1144 SIPNLLR*YLVTALRTGLPSTKMAFIPLKAVGSASVKLLLESPEISLYECFSVAEKVNVL 1323
S+PNL + Y VT TGLPS AF+PLK VGS + + SP + + A K NVL
Sbjct: 374 SMPNLCKWYFVTREHTGLPSNTSAFMPLK*VGSLAPRSKSPSPSAPAWPTLNKAVKENVL 195
Query: 1324 PTEGWLVKLICPPISSARH 1380
P G L+ LI PPI+S +H
Sbjct: 194 PIPGRLINLISPPINSIKH 138
Score = 61.6 bits (128), Expect(4) = 3e-051
Identities = 28/45 (62%), Positives = 33/45 (73%)
Frame = +1 / -2
Query: 373 AWYSCSSSKGLDTYPSIPDFMHSS*VAWITSAVIARTGRWYSAVV 507
A YSCSSSKG +TYPS+P HSS VA ITSAVIA+ G + +V
Sbjct: 1185 ALYSCSSSKGFETYPSMPHRRHSSWVACITSAVIAKIGTCHLLLV 1051
Score = 54.7 bits (113), Expect(4) = 3e-051
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = +1 / -3
Query: 1423 EVELSACINGVKTRSCACSGIPTPVSSI 1506
+VELSACINGVKTR CA GIP PVSS+
Sbjct: 95 DVELSACINGVKTRCCAGRGIPIPVSSV 12
Score = 28.1 bits (55), Expect(4) = e-103
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2 / +2
Query: 947 LVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLL 840
L E K K + V+ KP+RAS +A +Q L
Sbjct: 611 LTAEETQKAKAAGFAETVILKPLRASMLAVCLQLAL 718
>gb|CF399989.1|CF399989 RTWW1_2_C12.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_2_C12_A015 5', mRNA sequence
Length = 754
Score = 138 bits (297), Expect(3) = 9e-055
Identities = 61/87 (70%), Positives = 68/87 (78%)
Frame = -2 / +2
Query: 791 LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDV 612
L ++L GK+ILVVDDN VN RVAA ALKKYGANV C +SGK AIS+L+ PH F+ACFMDV
Sbjct: 185 LSNVLSGKSILVVDDNIVNRRVAAGALKKYGANVICTDSGKSAISMLRQPHNFNACFMDV 364
Query: 611 QMPEMDGFEATGQIRQMELKANEERKN 531
QMPEMDGFEAT QIR EL E N
Sbjct: 365 QMPEMDGFEATRQIRAAELANMECTSN 445
Score = 88.1 bits (186), Expect(3) = 9e-055
Identities = 32/43 (74%), Positives = 42/43 (97%)
Frame = -2 / +2
Query: 494 YHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVS 366
+H+P+LAMTADVIQAT+EEC++ GMDGYVSKPF+EEQLY+A++
Sbjct: 476 WHVPILAMTADVIQATHEECLRCGMDGYVSKPFEEEQLYKALA 604
Score = 80.3 bits (169), Expect(2) = 2e-026
Identities = 39/80 (48%), Positives = 45/80 (56%)
Frame = +1 / -2
Query: 568 LICPVASNPSISGI*TSIKHASKRCGG*SRLIASLPLSTQLTLAPYFXXXXXXXXXXXXX 747
LIC VASNPSISGI TS+KHA K CG S IA PLS Q+TLAPYF
Sbjct: 408 LICRVASNPSISGICTSMKHALKLCGCRSMDIADFPLSVQITLAPYFFSAPAATRRLTML 229
Query: 748 XXXXNIFFPTSKLRRNDGRF 807
++ FP + L R + F
Sbjct: 228 SSTTSMDFPDNTLLRGEEVF 169
Score = 61.1 bits (127), Expect(2) = 2e-026
Identities = 27/38 (71%), Positives = 30/38 (78%)
Frame = +1 / -2
Query: 373 AWYSCSSSKGLDTYPSIPDFMHSS*VAWITSAVIARTG 486
A YSCSSSKG +TYPS+P HSS VA ITSAVIA+ G
Sbjct: 597 ALYSCSSSKGFETYPSMPHRRHSSWVACITSAVIAKIG 484
Score = 28.1 bits (55), Expect(3) = 9e-055
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2 / +2
Query: 947 LVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLL 840
L E K K + V+ KP+RAS +A +Q L
Sbjct: 23 LTAEETQKAKAAGFAETVILKPLRASMLAVCLQLAL 130
>gb|DR081108.1|DR081108 RTFEPL1_27_A10.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_27_A10_A029 5', mRNA sequence
Length = 747
Score = 138 bits (297), Expect(3) = 2e-051
Identities = 61/87 (70%), Positives = 68/87 (78%)
Frame = -2 / +1
Query: 791 LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDV 612
L ++L GK+ILVVDDN VN RVAA ALKKYGANV C +SGK AIS+L+ PH F+ACFMDV
Sbjct: 352 LSNVLSGKSILVVDDNIVNRRVAAGALKKYGANVICTDSGKSAISMLRQPHNFNACFMDV 531
Query: 611 QMPEMDGFEATGQIRQMELKANEERKN 531
QMPEMDGFEAT QIR EL E N
Sbjct: 532 QMPEMDGFEATRQIRAAELANMECTSN 612
Score = 80.3 bits (169), Expect(2) = 6e-023
Identities = 39/80 (48%), Positives = 45/80 (56%)
Frame = +1 / -2
Query: 568 LICPVASNPSISGI*TSIKHASKRCGG*SRLIASLPLSTQLTLAPYFXXXXXXXXXXXXX 747
LIC VASNPSISGI TS+KHA K CG S IA PLS Q+TLAPYF
Sbjct: 575 LICRVASNPSISGICTSMKHALKLCGCRSMDIADFPLSVQITLAPYFFSAPAATRRLTML 396
Query: 748 XXXXNIFFPTSKLRRNDGRF 807
++ FP + L R + F
Sbjct: 395 SSTTSMDFPDNTLLRGEEVF 336
Score = 77.1 bits (162), Expect(3) = 2e-051
Identities = 28/40 (70%), Positives = 36/40 (90%)
Frame = -2 / +1
Query: 509 STTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDE 390
+T +H+P+LAMTADVIQAT+EEC++ GMDGYVSKPF+E
Sbjct: 628 ATNNRWHVPILAMTADVIQATHEECLRCGMDGYVSKPFEE 747
Score = 49.6 bits (102), Expect(2) = 6e-023
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = +1 / -2
Query: 391 SSKGLDTYPSIPDFMHSS*VAWITSAVIARTGRWYSAVV 507
SSKG +TYPS+P HSS VA ITSAVIA+ G + +V
Sbjct: 746 SSKGFETYPSMPHRRHSSWVACITSAVIAKIGTCHLLLV 630
Score = 28.1 bits (55), Expect(3) = 2e-051
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2 / +1
Query: 947 LVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLL 840
L E K K + V+ KP+RAS +A +Q L
Sbjct: 190 LTAEETQKAKAAGFAETVILKPLRASMLAVCLQLAL 297
>gb|CF667932.1|CF667932 RTCNT1_33_H11.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_33_H11_A029 3', mRNA sequence
Length = 682
Score = 137 bits (293), Expect(3) = 3e-051
Identities = 57/88 (64%), Positives = 67/88 (76%)
Frame = -2 / -1
Query: 1547 SNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAE 1368
S+ S V L +SIEDTGVGIPL AQ+RVF PFMQADSSTSR YGGTGIGLSIS+ L E
Sbjct: 517 SSPETSQTVNLCVSIEDTGVGIPLNAQERVFVPFMQADSSTSRTYGGTGIGLSISRFLVE 338
Query: 1367 LMGGQISFTSHPSVGSTFTFSATLKHSY 1284
LM G++ F S P++GSTF F+A K +
Sbjct: 337 LMNGRMDFVSKPAIGSTFVFTAVFKKGH 254
Score = 74.8 bits (157), Expect(3) = 3e-051
Identities = 26/49 (53%), Positives = 40/49 (81%)
Frame = -2 / -1
Query: 1250 TEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKA 1104
+EAL T FKGM+A+++DGRP+R++VT YHLKRLG+ ++ V N+ + + A
Sbjct: 217 SEALTTVFKGMRALVIDGRPIRASVTEYHLKRLGVQVETVTNLKSAIAA 71
Score = 31.3 bits (62), Expect(3) = 3e-051
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = -2 / -1
Query: 1682 VESTANGAFNTLSGFEAADRRNSWQYF 1602
V++ ++ + NTLSG EA D R++W+ F
Sbjct: 652 VKNGSSSSCNTLSGCEAFDVRSNWENF 572
>dbj|BD267330.1| Compositions isolated from plant cells and utilization of the same in
modifying plant cell signal transduction
Length = 558
Score = 182 bits (391), Expect(2) = 7e-049
Identities = 76/111 (68%), Positives = 97/111 (87%)
Frame = -2 / +2
Query: 2075 QKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREK 1896
QKDYAQTAQ G+ALITLIN+VLD+AKIE+G+LELE VPF +R+++D V+SLFS+K++ K
Sbjct: 26 QKDYAQTAQASGKALITLINEVLDQAKIESGRLELETVPFHIRTVLDSVLSLFSAKTQAK 205
Query: 1895 CIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAE 1743
IELAVFV + VP++VIGDP RF+QI+TNLV N+VKFTE GH+FV V LA+
Sbjct: 206 GIELAVFVSERVPEIVIGDPGRFQQIITNLVSNSVKFTENGHIFVCVHLAQ 358
Score = 120 bits (256), Expect(2) = 7e-028
Identities = 65/116 (56%), Positives = 74/116 (63%)
Frame = +1 / -1
Query: 1747 AKHTRTNT*PRSVNLTAFPTKFVSICRNLQGSPITTFGTLSHTNTASSMHFSRDFEENKE 1926
A+ T+T P SVNLT T+ V IC N GSP+T GTLS TNTASSM + E ++
Sbjct: 354 AR*TQTKMCPFSVNLTELETRLVIIC*NRPGSPMTISGTLSDTNTASSMPLACVLAEKRD 175
Query: 1927 TTSSMRERRSKGTASSSNFPASIFARSRTSFISVINALPHI*AV*A*SFCVIVRSV 2094
T S R KGT SSS P SIFA SRTSFI+VI A P AV*A*SFCV +SV
Sbjct: 174 KTLSRTVRIWKGTVSSSRRPDSIFAWSRTSFINVIKAFPLACAV*A*SFCVASKSV 7
Score = 35.0 bits (70), Expect(2) = 7e-049
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -2 / +2
Query: 1655 NTLSGFEAADRRNSWQYF 1602
NTLSG EAAD RN+W+ F
Sbjct: 440 NTLSGSEAADTRNNWESF 493
Score = 26.3 bits (51), Expect(2) = 7e-028
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1 / -1
Query: 1612 QLFRLSAASNPLKVL 1656
QLF +SAAS PL+VL
Sbjct: 483 QLFLVSAASEPLRVL 439
>gb|CF397914.1|CF397914 RTDS3_23_F01.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_23_F01_A022 5', mRNA sequence
Length = 406
Score = 179 bits (386), Expect = 8e-044
Identities = 76/134 (56%), Positives = 91/134 (67%)
Frame = -2 / +1
Query: 1487 GIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTF 1308
GIPL AQ RVFTPFM ADSSTSR YGGTGIGLSIS+CL ELMGG+I F S P +GSTF+F
Sbjct: 1 GIPLPAQHRVFTPFMHADSSTSRTYGGTGIGLSISRCLIELMGGEIRFISRPGIGSTFSF 180
Query: 1307 SATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVN 1128
+A K GD LPT FKGMKA+++DG PVRS VT+YHL+R GI + +
Sbjct: 181 TALFKVGQAGADGDGDLLRGARLPTHFKGMKALVLDGNPVRSLVTKYHLQRFGIEVDSIT 360
Query: 1127 NMNAVVKAFPGQNG 1086
+ + G +G
Sbjct: 361 SSKVALSMLNGMDG 402
Score = 80.8 bits (170), Expect(2) = 9e-021
Identities = 38/79 (48%), Positives = 48/79 (60%)
Frame = +1 / -3
Query: 1144 SIPNLLR*YLVTALRTGLPSTKMAFIPLKAVGSASVKLLLESPEISLYECFSVAEKVNVL 1323
S+PNL + Y VT RTGLPS AF+PLK VGS + + SP + + A K NVL
Sbjct: 344 SMPNLCKWYFVTKERTGLPSNTSAFMPLK*VGSLAPRSKSPSPSAPAWPTLNKAVKENVL 165
Query: 1324 PTEGWLVKLICPPISSARH 1380
P G L+ LI PPI+S +H
Sbjct: 164 PIPGRLINLISPPINSIKH 108
Score = 41.8 bits (85), Expect(2) = 9e-021
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +1 / -3
Query: 1423 EVELSACINGVKTRSCACSGI 1485
+VELSACINGVKTR CA GI
Sbjct: 65 DVELSACINGVKTRCCAGRGI 3
>gb|CO173085.1|CO173085 NDL1_33_H09.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_33_H09_A029 5', mRNA sequence
Length = 771
Score = 135 bits (290), Expect(3) = 4e-038
Identities = 60/87 (68%), Positives = 67/87 (77%)
Frame = -2 / +3
Query: 791 LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDV 612
L ++L GK+ILVVDDN VN VAA ALKKYGANV C +SGK AIS+L+ PH F+ACFMDV
Sbjct: 459 LSNVLSGKSILVVDDNIVNRPVAAGALKKYGANVICTDSGKSAISMLRQPHNFNACFMDV 638
Query: 611 QMPEMDGFEATGQIRQMELKANEERKN 531
QMPEMDGFEAT QIR EL E N
Sbjct: 639 QMPEMDGFEATRQIRAAELANMECTSN 719
Score = 43.2 bits (88), Expect(3) = 4e-038
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -2 / +3
Query: 1202 DGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNG 1086
DG PVRS VT+YHL+R GI + + + + G +G
Sbjct: 3 DGNPVRSLVTKYHLQRFGIQVDSITSSKVALSMLNGMDG 119
Score = 28.1 bits (55), Expect(3) = 4e-038
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2 / +3
Query: 947 LVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLL 840
L E K K + V+ KP+RAS +A +Q L
Sbjct: 297 LTAEETQKAKAAGFAETVILKPLRASMLAVCLQLAL 404
>gb|DR015323.1|DR015323 STRS1_2_G01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_2_G01_A034 5', mRNA sequence
Length = 884
Score = 112 bits (239), Expect(2) = 7e-035
Identities = 57/166 (34%), Positives = 89/166 (53%)
Frame = -2 / +3
Query: 2246 DKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKD 2067
D + E +E + +AE A A++ FLA +HE+RTPM+ + Q+
Sbjct: 36 DLLMEQNVALEIARQEAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRS 215
Query: 2066 YAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIE 1887
+T L TLINDVLD +K+E G LEL F+LRS+ +V +L + K +
Sbjct: 216 MVETILRSSNLLATLINDVLDLSKLEDGSLELNIRIFNLRSMFHEVHNLVKPIASVKKLC 395
Query: 1886 LAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCL 1749
+++ + ++P+ GD R Q + N++GNAVKF++ G V V V L
Sbjct: 396 VSMNLVSDLPEYAAGDDKRLMQTVLNVLGNAVKFSKEGSVSVTVLL 533
Score = 62.5 bits (130), Expect(2) = 7e-035
Identities = 25/56 (44%), Positives = 37/56 (66%)
Frame = -2 / +3
Query: 1517 LAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 1350
L + ++DTG GI ++F+ F+ +D+ T+RNYGGTG+GL+I K LM G I
Sbjct: 603 LRVQVKDTGAGINPPDIPKLFSKFVHSDTMTTRNYGGTGLGLAICKRFVNLMEGHI 770
>gb|CO198621.1|CO198621 GEO1_15_E06.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_15_E06_A029 3', mRNA sequence
Length = 724
Score = 90.0 bits (190), Expect(2) = 5e-034
Identities = 34/45 (75%), Positives = 43/45 (95%)
Frame = -2 / -1
Query: 500 AEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVS 366
+++H+P+LAMTADVIQAT+EEC K GMDGYVSKPF+EEQLY+AV+
Sbjct: 568 SKWHVPILAMTADVIQATHEECSKCGMDGYVSKPFEEEQLYRAVA 434
Score = 77.1 bits (162), Expect(2) = 5e-034
Identities = 28/38 (73%), Positives = 33/38 (86%)
Frame = -2 / -1
Query: 653 LQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEE 540
L+PPH+FDACFMDVQMPEMDGFEAT Q+R +E NE+
Sbjct: 724 LKPPHKFDACFMDVQMPEMDGFEATRQVRDLERTVNEQ 611
>gb|DN609482.1|DN609482 EST962532 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAD40, mRNA sequence
Length = 865
Score = 86.3 bits (182), Expect(3) = 2e-029
Identities = 44/130 (33%), Positives = 68/130 (52%)
Frame = -2 / +1
Query: 2138 TPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVP 1959
TPM+ + Q+ +T L TLINDVLD +K+E G LEL
Sbjct: 1 TPMHAIIALSSLLQETELIPEQRSMVETILRSSDLLATLINDVLDLSKLEDGSLELNIRI 180
Query: 1958 FDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTE 1779
F+LRS+ +V +L + K + +++ + ++P+ GD R Q + N++GNAVKF++
Sbjct: 181 FNLRSMFHEVHNLVKPIASVKKLCVSMNLASDLPEYAAGDDKRLMQTVLNVLGNAVKFSK 360
Query: 1778 RGHVFVRVCL 1749
G V V V L
Sbjct: 361 EGSVSVTVLL 390
Score = 62.5 bits (130), Expect(3) = 2e-029
Identities = 25/56 (44%), Positives = 37/56 (66%)
Frame = -2 / +1
Query: 1517 LAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 1350
L + ++DTG GI ++F+ F+ +D+ T+RNYGGTG+GL+I K LM G I
Sbjct: 460 LRVQVKDTGAGINPPDIPKLFSKFVHSDTMTTRNYGGTGLGLAICKRFVNLMEGHI 627
Score = 29.5 bits (58), Expect(3) = 2e-029
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2 / +1
Query: 1229 FKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNN 1125
F G+K ++ D V VTR L RLG + VV++
Sbjct: 760 FPGLKVLVTDDNGVNRMVTRSLLARLGCDVTVVDS 864
>gb|BF060537.1|BF060537 NXCI_116_D05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_116_D05 5' similar to Arabidopsis
thaliana sequence At2g01830 cytokinin receptor CRE1b
(CRE1) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 459
Score = 116 bits (247), Expect(2) = 2e-028
Identities = 47/63 (74%), Positives = 53/63 (84%)
Frame = -2 / +3
Query: 800 PSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACF 621
P FL+SLL GK ILVVDDN+VN RV ALKKYGANV C ESGK+AI++LQ PH+FDACF
Sbjct: 270 PPFLQSLLFGKKILVVDDNRVNRRVXXXALKKYGANVECAESGKNAIAMLQLPHKFDACF 449
Query: 620 MDV 612
MDV
Sbjct: 450 MDV 458
Score = 32.7 bits (65), Expect(2) = 2e-028
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -2 / +3
Query: 947 LVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLL 840
+ + E++K K + V+ KP+RAS +A+ +QQ L
Sbjct: 117 ITSLESEKAKAAGFVETVIMKPLRASMVAACLQQEL 224
>gb|DT627668.1|DT627668 EST1156417 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCP29 5' end, mRNA sequence
Length = 935
Score = 62.5 bits (130), Expect(5) = 3e-025
Identities = 25/56 (44%), Positives = 37/56 (66%)
Frame = -2 / -1
Query: 1517 LAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 1350
L + ++DTG GI ++F+ F+ +D+ T+RNYGGTG+GL+I K LM G I
Sbjct: 659 LRVQVKDTGAGINPPDIPKLFSKFVHSDTMTTRNYGGTGLGLAICKRFVNLMEGHI 492
Score = 40.9 bits (83), Expect(5) = 3e-025
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -2 / -1
Query: 1874 VCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCL 1749
+ ++P+ GD R Q + N++GNAVKF++ G V V V L
Sbjct: 854 LASDLPEYAAGDDKRLMQTVLNVLGNAVKFSKEGSVSVTVLL 729
Score = 38.2 bits (77), Expect(5) = 3e-025
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -2 / -1
Query: 482 VLAMTADVIQATYEECIKSGMDGYVSKPFDEEQL 381
++A+T +AT E+CIK GMDG + KP E++
Sbjct: 110 LVALTGSADKATKEKCIKIGMDGVLLKPVSLEKM 9
Score = 31.3 bits (62), Expect(5) = 3e-025
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2 / -1
Query: 659 SLLQPPHRFDACFMDVQMPEMDGFEATGQIRQM 561
++ Q F F+DV MP MDG++ I++M
Sbjct: 236 AMSQAGQNFKVLFLDVCMPGMDGYDVAIHIQEM 138
Score = 30.4 bits (60), Expect(5) = 3e-025
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2 / -1
Query: 1229 FKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKA 1104
F G+K ++ D V VTR L RLG + VV++ + ++A
Sbjct: 359 FPGLKVLVTDDNGVNRMVTRSLLARLGCDVTVVDSGHECLQA 234
>gb|DR693059.1|DR693059 EST1083147 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADT84 3' end, mRNA sequence
Length = 657
Score = 97.7 bits (207), Expect(2) = 1e-024
Identities = 39/100 (39%), Positives = 60/100 (60%)
Frame = -2 / +3
Query: 3242 YRAARTKRWWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQF 3063
+ + R W +A W+L + +++ R++ R +E L +MC+ERARMLQ+QF
Sbjct: 306 FLSERVGERWNTMAVIVWILLGSSVAIYSFYSMTRETSRRRQETLANMCDERARMLQDQF 485
Query: 3062 GVTVNHVHAIAILISTFNFEKSPPAIDQDTFAKYTARTSF 2943
++NHV A+ +L+ST + E P A+ QD FA YTAR F
Sbjct: 486 VASMNHVQALTVLVSTLHLEMKPSALYQDVFAAYTARDFF 605
Score = 37.7 bits (76), Expect(2) = 1e-024
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = -2 / +1
Query: 2951 TSFERPLLNGVAFAQRVFH 2895
TSFERPL++GVA+A RV H
Sbjct: 598 TSFERPLMSGVAYAPRVLH 654
>dbj|BD266968.1| Compositions isolated from plant cells and utilization of the same in
modifying plant cell signal transduction
Length = 3567
Score = 84.5 bits (178), Expect(4) = 4e-024
Identities = 36/99 (36%), Positives = 61/99 (61%)
Frame = -2 / +1
Query: 2033 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPK 1854
L TLIND++D +++E L L+ PF L ++ D L + SR K + L V + D +P
Sbjct: 2122 LSTLINDIMDFSELEDTSLVLQLHPFQLHGMLKDAAHLTETMSRSKGLLLNVEIGDGMPD 2301
Query: 1853 VVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENS 1737
VIGD R +I+ ++VGNA+ T++G + +R+C+ + +
Sbjct: 2302 HVIGDEKRILRIILHMVGNAINSTKQGTISIRICVEDRA 2418
Score = 39.1 bits (79), Expect(4) = 4e-024
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = -2 / +1
Query: 482 VLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTTD 342
V+A+TA + T E C+++GMDG + KP ++ + ++V T +
Sbjct: 3016 VVALTASTDKETMERCLQTGMDGVIRKPVTLREMSNELFKIVHQTNN 3156
Score = 32.7 bits (65), Expect(4) = 4e-024
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2 / +1
Query: 662 ISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQ 564
++LLQ F F++V + +MDG+E +IRQ
Sbjct: 2890 MTLLQSGSAFQLVFLEVCLAQMDGYEVAFRIRQ 2988
Score = 29.9 bits (59), Expect(4) = 4e-024
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2 / +1
Query: 1235 TAFKGMKAILVDGRPVRSAVTRYHLKRLG 1149
++FKG+K ++ D V +VTR L+ LG
Sbjct: 2764 SSFKGLKVLVADDNNVSRSVTRRLLQELG 2850
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,823,314,971
Number of Sequences: 355925
Number of extensions: 28222823
Number of successful extensions: 110069
Number of sequences better than 1.0e-020: 17
length of database: 72,425,745
effective HSP length: 56
effective length of database: 52,493,945
effective search space used: 55276124085
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)