TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2949674.2.1
(658 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW011366.1|AW011366 ST19H10 Pine TriplEx shoot tip libra... 164 7e-040
gb|AW042959.1|AW042959 ST27E10 Pine TriplEx shoot tip libra... 164 7e-040
gb|BX681680.1|BX681680 BX681680 RS Pinus pinaster cDNA clon... 164 7e-040
gb|DR099897.1|DR099897 STRR1_59_E05.g1_A033 Stem Response R... 164 7e-040
gb|BX249133.1|BX249133 BX249133 Pinus pinaster differenciat... 161 5e-039
gb|BX250252.1|BX250252 BX250252 Pinus pinaster differenciat... 161 5e-039
gb|AW042801.1|AW042801 ST25E10 Pine TriplEx shoot tip libra... 157 8e-038
gb|AW064656.1|AW064656 ST34B04 Pine TriplEx shoot tip libra... 157 8e-038
gb|AW981873.1|AW981873 PC19F11 Pine TriplEx pollen cone lib... 157 8e-038
gb|BQ291482.1|BQ291482 NXRV059_F08_F NXRV (Nsf Xylem Root w... 157 8e-038
gb|BQ699586.1|BQ699586 NXRV124_C02_F NXRV (Nsf Xylem Root w... 157 8e-038
gb|BQ702181.1|BQ702181 NXSI_125_H02_F NXSI (Nsf Xylem Side ... 157 8e-038
gb|CO367450.1|CO367450 RTK1_34_H04.b1_A029 Roots minus pota... 157 8e-038
gb|CO367532.1|CO367532 RTK1_34_H04.g1_A029 Roots minus pota... 157 8e-038
gb|CV032483.1|CV032483 RTNACL1_8_B03.g1_A029 Roots plus add... 157 8e-038
gb|CX649429.1|CX649429 COLD1_35_E12.b1_A029 Root cold Pinus... 157 8e-038
gb|CX649512.1|CX649512 COLD1_35_E12.g1_A029 Root cold Pinus... 157 8e-038
gb|CX651620.1|CX651620 COLD1_53_D10.g1_A029 Root cold Pinus... 157 8e-038
gb|DR011506.1|DR011506 HEAT1_6_D05.b1_A029 Root at 37 C for... 157 8e-038
gb|DR011586.1|DR011586 HEAT1_6_D05.g1_A029 Root at 37 C for... 157 8e-038
gb|DR050573.1|DR050573 RTBOR1_24_H06.b1_A029 Roots plus add... 157 8e-038
gb|DR050658.1|DR050658 RTBOR1_24_H06.g1_A029 Roots plus add... 157 8e-038
gb|DR089861.1|DR089861 RTAL1_11_F04.b1_A029 Roots plus adde... 157 8e-038
gb|DR092369.1|DR092369 STRR1_1_A09.b1_A033 Stem Response Re... 157 8e-038
gb|DR092449.1|DR092449 STRR1_1_A09.g1_A033 Stem Response Re... 157 8e-038
gb|DR110590.1|DR110590 RTS1_11_F06.g1_A029 Roots minus sulf... 157 8e-038
gb|DR111320.1|DR111320 RTS1_16_H04.g1_A029 Roots minus sulf... 157 8e-038
gb|DR112758.1|DR112758 RTS1_30_H09.b1_A029 Roots minus sulf... 157 8e-038
gb|DR112824.1|DR112824 RTS1_30_H09.g1_A029 Roots minus sulf... 157 8e-038
gb|DR117021.1|DR117021 RTMG1_4_F03.b1_A029 Roots minus magn... 157 8e-038
gb|DR120307.1|DR120307 RTMG1_28_G09.g2_A029 Roots minus mag... 157 8e-038
gb|DR168541.1|DR168541 RTPHOS1_26_E04.b1_A029 Roots minus p... 157 8e-038
gb|DR385301.1|DR385301 RTHG1_7_G09.g1_A029 Roots plus added... 157 8e-038
gb|DR745683.1|DR745683 RTCU1_31_D06.g1_A029 Roots plus adde... 157 8e-038
gb|AW010040.1|AW010040 ST01G02 Pine TriplEx shoot tip libra... 155 2e-037
gb|BE656756.1|BE656756 NXCI_056_E06_F NXCI (Nsf Xylem Compr... 154 7e-037
gb|BG275492.1|BG275492 NXSI_139_E06_F NXSI (Nsf Xylem Side ... 154 7e-037
gb|DR098991.1|DR098991 STRR1_50_D02.b1_A033 Stem Response R... 153 1e-036
gb|CD028483.1|CD028483 NXSI_119_E06_F NXSI (Nsf Xylem Side ... 151 4e-036
gb|DR109733.1|DR109733 RTS1_4_F11.b1_A029 Roots minus sulfu... 151 4e-036
gb|AW587726.1|AW587726 ST66A04 Pine TriplEx shoot tip libra... 149 1e-035
gb|AW225859.1|AW225859 ST72E12 Pine TriplEx shoot tip libra... 149 2e-035
gb|AW226116.1|AW226116 ST77E06 Pine TriplEx shoot tip libra... 147 6e-035
gb|DR168614.1|DR168614 RTPHOS1_26_E04.g1_A029 Roots minus p... 145 3e-034
gb|BQ702065.1|BQ702065 NXSI_124_A05_F NXSI (Nsf Xylem Side ... 144 6e-034
gb|AW064560.1|AW064560 ST33A07 Pine TriplEx shoot tip libra... 116 1e-033
gb|AW226132.1|AW226132 ST77F12 Pine TriplEx shoot tip libra... 137 7e-032
gb|BQ700423.1|BQ700423 NXRV105_E04_F NXRV (Nsf Xylem Root w... 95 8e-031
gb|AW056753.1|AW056753 ST55D12 Pine TriplEx shoot tip libra... 128 3e-029
gb|BE662547.1|BE662547 ST87/ST87F05 Pine TriplEx shoot tip ... 127 5e-029
gb|BG039926.1|BG039926 NXSI_101_G08_F NXSI (Nsf Xylem Side ... 127 1e-028
gb|AW056878.1|AW056878 ST57D10 Pine TriplEx shoot tip libra... 123 9e-028
gb|BF610137.1|BF610137 NXSI_055_B06_F NXSI (Nsf Xylem Side ... 119 2e-026
gb|BE662536.1|BE662536 ST87/ST87E03 Pine TriplEx shoot tip ... 116 1e-025
gb|AW437849.1|AW437849 ST73A04 Pine TriplEx shoot tip libra... 115 3e-025
gb|AW010680.1|AW010680 ST09H07 Pine TriplEx shoot tip libra... 92 2e-023
gb|BQ197851.1|BQ197851 NXLV121_D12_F NXLV (Nsf Xylem Late w... 106 1e-022
gb|BX252926.1|BX252926 BX252926 Pinus pinaster differenciat... 106 2e-022
gb|CF471625.1|CF471625 RTDS1_4_D06.g1_A015 Drought-stressed... 103 5e-022
gb|CF471522.1|CF471522 RTDS1_4_D06.b1_A015 Drought-stressed... 103 5e-022
gb|CO163577.1|CO163577 FLD1_42_B04.g1_A029 Root flooded Pin... 103 5e-022
gb|CF663620.1|CF663620 RTCNT1_4_C10.b1_A029 Root control Pi... 103 5e-022
gb|DR168508.1|DR168508 RTPHOS1_26_A01.b1_A029 Roots minus p... 103 6e-022
gb|AW981762.1|AW981762 PC18D09 Pine TriplEx pollen cone lib... 104 6e-022
gb|AW981976.1|AW981976 PC22C08 Pine TriplEx pollen cone lib... 104 6e-022
gb|DR743483.1|DR743483 RTCU1_16_E04.b1_A029 Roots plus adde... 103 6e-022
gb|CF663697.1|CF663697 RTCNT1_4_C10.g1_A029 Root control Pi... 103 6e-022
gb|AI812665.1|AI812665 17F5 Pine Lambda Zap Xylem library P... 103 1e-021
gb|AW010808.1|AW010808 ST14C05 Pine TriplEx shoot tip libra... 103 1e-021
gb|AW290164.1|AW290164 NXNV012F03F Nsf Xylem Normal wood Ve... 103 1e-021
gb|AW290662.1|AW290662 NXNV044F08F Nsf Xylem Normal wood Ve... 103 1e-021
gb|BF777161.1|BF777161 NXSI_066_A01_F NXSI (Nsf Xylem Side ... 103 1e-021
gb|BM367489.1|BM367489 NXLV_049_H08_F NXLV (Nsf Xylem Late ... 103 1e-021
gb|BQ197174.1|BQ197174 NXLV110_D10_F NXLV (Nsf Xylem Late w... 103 1e-021
gb|BQ197971.1|BQ197971 NXLV123_D07_F NXLV (Nsf Xylem Late w... 103 1e-021
gb|BQ198376.1|BQ198376 NXLV130_A08_F NXLV (Nsf Xylem Late w... 103 1e-021
gb|BQ634539.1|BQ634539 NXRV070_C01_F NXRV (Nsf Xylem Root w... 103 1e-021
gb|CD026810.1|CD026810 NXNV012F03 Nsf Xylem Normal wood Ver... 103 1e-021
gb|CD027324.1|CD027324 NXNV044F08 Nsf Xylem Normal wood Ver... 103 1e-021
gb|CF395565.1|CF395565 RTDS2_12_G03.g1_A021 Drought-stresse... 103 1e-021
gb|CF472038.1|CF472038 RTDS1_8_B01.b1_A015 Drought-stressed... 103 1e-021
gb|CF668877.1|CF668877 RTCNT1_39_E09.b1_A029 Root control P... 103 1e-021
gb|CF668961.1|CF668961 RTCNT1_39_E09.g1_A029 Root control P... 103 1e-021
gb|CF672821.1|CF672821 RTCNT1_74_D10.b1_A029 Root control P... 103 1e-021
gb|CF672891.1|CF672891 RTCNT1_74_D10.g1_A029 Root control P... 103 1e-021
gb|BX682000.1|BX682000 BX682000 RS Pinus pinaster cDNA clon... 103 1e-021
gb|CO157940.1|CO157940 FLD1_3_E11.b1_A029 Root flooded Pinu... 103 1e-021
gb|CO159412.1|CO159412 FLD1_13_A05.g1_A029 Root flooded Pin... 103 1e-021
gb|CO160683.1|CO160683 FLD1_23_F07.b1_A029 Root flooded Pin... 103 1e-021
gb|CO161000.1|CO161000 FLD1_26_B03.b1_A029 Root flooded Pin... 103 1e-021
gb|CO161072.1|CO161072 FLD1_26_B03.g1_A029 Root flooded Pin... 103 1e-021
gb|CO161948.1|CO161948 FLD1_32_E06.b1_A029 Root flooded Pin... 103 1e-021
gb|CO162022.1|CO162022 FLD1_32_E06.g1_A029 Root flooded Pin... 103 1e-021
gb|CO163494.1|CO163494 FLD1_42_B04.b1_A029 Root flooded Pin... 103 1e-021
gb|CO165000.1|CO165000 FLD1_51_D12.g1_A029 Root flooded Pin... 103 1e-021
gb|CO171485.1|CO171485 NDL1_22_C02.b1_A029 Needles control ... 103 1e-021
gb|CO176098.1|CO176098 NDL1_59_E02.g1_A029 Needles control ... 103 1e-021
gb|CV036165.1|CV036165 RTNACL1_57_E02.b1_A029 Roots plus ad... 103 1e-021
gb|CV036232.1|CV036232 RTNACL1_57_E02.g1_A029 Roots plus ad... 103 1e-021
gb|DR079017.1|DR079017 RTFEPL1_8_A04.g1_A029 Roots plus add... 103 1e-021
gb|DR080062.1|DR080062 RTFEPL1_20_A02.b1_A029 Roots plus ad... 103 1e-021
gb|DR080119.1|DR080119 RTFEPL1_20_A02.g1_A029 Roots plus ad... 103 1e-021
gb|DR089047.1|DR089047 RTAL1_6_F01.b1_A029 Roots plus added... 103 1e-021
gb|DR089132.1|DR089132 RTAL1_6_F01.g1_A029 Roots plus added... 103 1e-021
gb|DR743285.1|DR743285 RTCU1_14_G08.g1_A029 Roots plus adde... 103 1e-021
gb|DR168576.1|DR168576 RTPHOS1_26_A01.g1_A029 Roots minus p... 100 4e-021
>gb|AW011366.1|AW011366 ST19H10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST19H10, mRNA sequence
Length = 396
Score = 164 bits (352), Expect = 7e-040
Identities = 57/67 (85%), Positives = 58/67 (86%)
Frame = +2 / +1
Query: 329 GSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKR 508
GSLQP EC RC RCSATAYQKPCLF+C KCCA CLCVPPGTYGNK CPCYNNWKTKR
Sbjct: 31 GSLQPAECSPRCTSRCSATAYQKPCLFYCNKCCAKCLCVPPGTYGNKQMCPCYNNWKTKR 210
Query: 509 GGPKCP* 529
GGPKCP*
Sbjct: 211 GGPKCP* 231
>gb|AW042959.1|AW042959 ST27E10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST27E10, mRNA sequence
Length = 513
Score = 164 bits (352), Expect = 7e-040
Identities = 57/67 (85%), Positives = 58/67 (86%)
Frame = +2 / +1
Query: 329 GSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKR 508
GSLQP EC RC RCSATAYQKPCLF+C KCCA CLCVPPGTYGNK CPCYNNWKTKR
Sbjct: 229 GSLQPAECSPRCTSRCSATAYQKPCLFYCNKCCAKCLCVPPGTYGNKQMCPCYNNWKTKR 408
Query: 509 GGPKCP* 529
GGPKCP*
Sbjct: 409 GGPKCP* 429
>gb|BX681680.1|BX681680 BX681680 RS Pinus pinaster cDNA clone RS62H03, mRNA sequence
Length = 548
Score = 164 bits (352), Expect = 7e-040
Identities = 57/67 (85%), Positives = 58/67 (86%)
Frame = +2 / +1
Query: 329 GSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKR 508
GSLQP EC RC RCSATAYQKPCLF+C KCCA CLCVPPGTYGNK CPCYNNWKTKR
Sbjct: 127 GSLQPAECSPRCTSRCSATAYQKPCLFYCNKCCAKCLCVPPGTYGNKQMCPCYNNWKTKR 306
Query: 509 GGPKCP* 529
GGPKCP*
Sbjct: 307 GGPKCP* 327
>gb|DR099897.1|DR099897 STRR1_59_E05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_59_E05_A033 5', mRNA sequence
Length = 430
Score = 164 bits (352), Expect = 7e-040
Identities = 57/67 (85%), Positives = 58/67 (86%)
Frame = +2 / +2
Query: 329 GSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKR 508
GSLQP EC RC RCSATAYQKPCLF+C KCCA CLCVPPGTYGNK CPCYNNWKTKR
Sbjct: 68 GSLQPAECSPRCTSRCSATAYQKPCLFYCNKCCAKCLCVPPGTYGNKQMCPCYNNWKTKR 247
Query: 509 GGPKCP* 529
GGPKCP*
Sbjct: 248 GGPKCP* 268
>gb|BX249133.1|BX249133 BX249133 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP020D05 similar to GIBBERELLIN REGULATED
PROTEIN, mRNA sequence
Length = 700
Score = 161 bits (346), Expect = 5e-039
Identities = 53/69 (76%), Positives = 62/69 (89%)
Frame = +2 / +1
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGTYGNK CPCYNNWKT
Sbjct: 184 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKT 363
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 364 QQGGPKCP* 390
>gb|BX250252.1|BX250252 BX250252 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP034D01 similar to GIBBERELLIN REGULATED
PROTEIN, mRNA sequence
Length = 622
Score = 161 bits (346), Expect = 5e-039
Identities = 53/69 (76%), Positives = 62/69 (89%)
Frame = +2 / +2
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGTYGNK CPCYNNWKT
Sbjct: 185 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKT 364
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 365 QQGGPKCP* 391
>gb|AW042801.1|AW042801 ST25E10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST25E10, mRNA sequence
Length = 595
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +1
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 208 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 387
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 388 QQGGPKCP* 414
>gb|AW064656.1|AW064656 ST34B04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST34B04, mRNA sequence
Length = 508
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +2
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 200 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 379
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 380 QQGGPKCP* 406
>gb|AW981873.1|AW981873 PC19F11 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC19F11, mRNA sequence
Length = 487
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +2
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 101 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 280
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 281 QQGGPKCP* 307
>gb|BQ291482.1|BQ291482 NXRV059_F08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV059_F08 5' similar to Arabidopsis thaliana
sequence At3g02885 GASA5 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 618
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +3
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 189 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 368
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 369 QQGGPKCP* 395
>gb|BQ699586.1|BQ699586 NXRV124_C02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV124_C02 5' similar to Arabidopsis thaliana
sequence At3g02885 GASA5 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 584
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +3
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 183 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 362
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 363 QQGGPKCP* 389
>gb|BQ702181.1|BQ702181 NXSI_125_H02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_125_H02 5' similar to Arabidopsis thaliana
sequence At3g02885 GASA5 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 410
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +3
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 171 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 350
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 351 QQGGPKCP* 377
>gb|CO367450.1|CO367450 RTK1_34_H04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_34_H04_A029 3', mRNA sequence
Length = 712
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / -3
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 497 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 318
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 317 QQGGPKCP* 291
>gb|CO367532.1|CO367532 RTK1_34_H04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_34_H04_A029 5', mRNA sequence
Length = 680
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / -2
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 463 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 284
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 283 QQGGPKCP* 257
>gb|CV032483.1|CV032483 RTNACL1_8_B03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_8_B03_A029 5', mRNA sequence
Length = 704
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / -2
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 586 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 407
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 406 QQGGPKCP* 380
>gb|CX649429.1|CX649429 COLD1_35_E12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_35_E12_A029 3', mRNA sequence
Length = 733
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +3
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 141 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 320
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 321 QQGGPKCP* 347
>gb|CX649512.1|CX649512 COLD1_35_E12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_35_E12_A029 5', mRNA sequence
Length = 795
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +3
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 168 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 347
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 348 QQGGPKCP* 374
>gb|CX651620.1|CX651620 COLD1_53_D10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_53_D10_A029 5', mRNA sequence
Length = 733
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +3
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 174 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 353
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 354 QQGGPKCP* 380
>gb|DR011506.1|DR011506 HEAT1_6_D05.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_6_D05_A029 3', mRNA sequence
Length = 766
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +1
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 118 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 297
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 298 QQGGPKCP* 324
>gb|DR011586.1|DR011586 HEAT1_6_D05.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_6_D05_A029 5', mRNA sequence
Length = 786
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +1
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 175 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 354
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 355 QQGGPKCP* 381
>gb|DR050573.1|DR050573 RTBOR1_24_H06.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_24_H06_A029 3', mRNA sequence
Length = 531
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +1
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 55 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 234
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 235 QQGGPKCP* 261
>gb|DR050658.1|DR050658 RTBOR1_24_H06.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_24_H06_A029 5', mRNA sequence
Length = 664
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +2
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 167 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 346
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 347 QQGGPKCP* 373
>gb|DR089861.1|DR089861 RTAL1_11_F04.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_11_F04_A029 3', mRNA sequence
Length = 787
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +2
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 272 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 451
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 452 QQGGPKCP* 478
>gb|DR092369.1|DR092369 STRR1_1_A09.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_A09_A033 3', mRNA sequence
Length = 661
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +1
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 157 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 336
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 337 QQGGPKCP* 363
>gb|DR092449.1|DR092449 STRR1_1_A09.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_A09_A033 5', mRNA sequence
Length = 662
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +2
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 125 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 304
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 305 QQGGPKCP* 331
>gb|DR110590.1|DR110590 RTS1_11_F06.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_11_F06_A029 5', mRNA sequence
Length = 736
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +2
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 152 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 331
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 332 QQGGPKCP* 358
>gb|DR111320.1|DR111320 RTS1_16_H04.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_H04_A029 5', mRNA sequence
Length = 729
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +2
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 143 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 322
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 323 QQGGPKCP* 349
>gb|DR112758.1|DR112758 RTS1_30_H09.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_30_H09_A029 3', mRNA sequence
Length = 668
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +1
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 43 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 222
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 223 QQGGPKCP* 249
>gb|DR112824.1|DR112824 RTS1_30_H09.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_30_H09_A029 5', mRNA sequence
Length = 645
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +3
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 174 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 353
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 354 QQGGPKCP* 380
>gb|DR117021.1|DR117021 RTMG1_4_F03.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_4_F03_A029 3', mRNA sequence
Length = 715
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +2
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 110 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 289
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 290 QQGGPKCP* 316
>gb|DR120307.1|DR120307 RTMG1_28_G09.g2_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_28_G09_A029 5', mRNA sequence
Length = 669
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +1
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 175 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 354
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 355 QQGGPKCP* 381
>gb|DR168541.1|DR168541 RTPHOS1_26_E04.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_26_E04_A029 3', mRNA sequence
Length = 669
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / -2
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 503 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 324
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 323 QQGGPKCP* 297
>gb|DR385301.1|DR385301 RTHG1_7_G09.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_7_G09_A029 5', mRNA sequence
Length = 596
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / -2
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 445 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 266
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 265 QQGGPKCP* 239
>gb|DR745683.1|DR745683 RTCU1_31_D06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_31_D06_A029 5', mRNA sequence
Length = 459
Score = 157 bits (337), Expect = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +2 / +3
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 183 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 362
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 363 QQGGPKCP* 389
>gb|AW010040.1|AW010040 ST01G02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST01G02, mRNA sequence
Length = 489
Score = 155 bits (334), Expect = 2e-037
Identities = 51/69 (73%), Positives = 61/69 (88%)
Frame = +2 / +1
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNW+T
Sbjct: 205 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWRT 384
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 385 QQGGPKCP* 411
>gb|BE656756.1|BE656756 NXCI_056_E06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_056_E06 5' similar to Arabidopsis
thaliana sequence At3g02885 GASA5 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 460
Score = 154 bits (330), Expect = 7e-037
Identities = 51/69 (73%), Positives = 60/69 (86%)
Frame = +2 / +1
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 181 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 360
Query: 503 KRGGPKCP* 529
++G PKCP*
Sbjct: 361 QQGXPKCP* 387
>gb|BG275492.1|BG275492 NXSI_139_E06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_139_E06 5' similar to Arabidopsis thaliana
sequence At3g02885 GASA5 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 489
Score = 154 bits (330), Expect = 7e-037
Identities = 51/69 (73%), Positives = 60/69 (86%)
Frame = +2 / +1
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 181 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 360
Query: 503 KRGGPKCP* 529
++G PKCP*
Sbjct: 361 QQGXPKCP* 387
>gb|DR098991.1|DR098991 STRR1_50_D02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_50_D02_A033 3', mRNA sequence
Length = 460
Score = 153 bits (328), Expect = 1e-036
Identities = 51/69 (73%), Positives = 60/69 (86%)
Frame = +2 / -1
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 337 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 158
Query: 503 KRGGPKCP* 529
++GGP CP*
Sbjct: 157 QQGGP*CP* 131
>gb|CD028483.1|CD028483 NXSI_119_E06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_119_E06 5' similar to Arabidopsis thaliana
sequence At1g74670 GAST1-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 510
Score = 151 bits (325), Expect = 4e-036
Identities = 50/65 (76%), Positives = 58/65 (89%)
Frame = +2 / +2
Query: 335 LQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGG 514
L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT++GG
Sbjct: 5 LHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKTQQGG 184
Query: 515 PKCP* 529
PKCP*
Sbjct: 185 PKCP* 199
>gb|DR109733.1|DR109733 RTS1_4_F11.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_4_F11_A029 3', mRNA sequence
Length = 682
Score = 151 bits (325), Expect = 4e-036
Identities = 50/65 (76%), Positives = 58/65 (89%)
Frame = +2 / +1
Query: 335 LQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGG 514
L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT++GG
Sbjct: 37 LHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKTQQGG 216
Query: 515 PKCP* 529
PKCP*
Sbjct: 217 PKCP* 231
>gb|AW587726.1|AW587726 ST66A04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST66A04, mRNA sequence
Length = 463
Score = 149 bits (321), Expect = 1e-035
Identities = 50/69 (72%), Positives = 59/69 (85%)
Frame = +2 / +1
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT
Sbjct: 199 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKT 378
Query: 503 KRGGPKCP* 529
++G KCP*
Sbjct: 379 QQGXXKCP* 405
>gb|AW225859.1|AW225859 ST72E12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST72E12, mRNA sequence
Length = 458
Score = 149 bits (319), Expect = 2e-035
Identities = 56/77 (72%), Positives = 57/77 (74%)
Frame = +2 / +2
Query: 329 GSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKR 508
GSLQP EC RC RCSATAYQKPCLF+C KCCA CLCVPPGTYGNK CPCYNN TKR
Sbjct: 224 GSLQPAECSPRCTSRCSATAYQKPCLFYCNKCCAKCLCVPPGTYGNKQMCPCYNNXXTKR 403
Query: 509 GGPKCP**PSLSVYLMR 559
G KCP* L L R
Sbjct: 404 GXXKCP*IXXLRSLLYR 454
>gb|AW226116.1|AW226116 ST77E06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST77E06, mRNA sequence
Length = 453
Score = 147 bits (316), Expect = 6e-035
Identities = 52/66 (78%), Positives = 53/66 (80%)
Frame = +2 / +2
Query: 329 GSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKR 508
GSLQP EC RC RCSATAYQKPCLF+C KCCA CLCVPPGTYGNK CPCYNN TKR
Sbjct: 221 GSLQPAECSPRCTSRCSATAYQKPCLFYCNKCCAKCLCVPPGTYGNKQMCPCYNNXXTKR 400
Query: 509 GGPKCP 526
G KCP
Sbjct: 401 GXXKCP 418
>gb|DR168614.1|DR168614 RTPHOS1_26_E04.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_26_E04_A029 5', mRNA sequence
Length = 590
Score = 145 bits (311), Expect = 3e-034
Identities = 48/63 (76%), Positives = 56/63 (88%)
Frame = +2 / -2
Query: 341 PHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPK 520
P E GGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT++GGPK
Sbjct: 589 PSEIGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKTQQGGPK 410
Query: 521 CP* 529
CP*
Sbjct: 409 CP* 401
>gb|BQ702065.1|BQ702065 NXSI_124_A05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_124_A05 5' similar to Arabidopsis thaliana
sequence At3g02885 GASA5 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 220
Score = 144 bits (309), Expect = 6e-034
Identities = 48/65 (73%), Positives = 56/65 (86%)
Frame = +2 / +3
Query: 335 LQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGG 514
L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT GNK CPCYNNWKT++G
Sbjct: 6 LHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSGNKQVCPCYNNWKTQQGX 185
Query: 515 PKCP* 529
KCP*
Sbjct: 186 XKCP* 200
>gb|AW064560.1|AW064560 ST33A07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST33A07, mRNA sequence
Length = 584
Score = 116 bits (247), Expect(2) = 1e-033
Identities = 38/46 (82%), Positives = 40/46 (86%)
Frame = +2 / +2
Query: 392 QKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP* 529
+KPCLF+C KCCA CLCVPPGTYGNK CPCYNNWKT R GPKCP*
Sbjct: 284 KKPCLFYCNKCCAKCLCVPPGTYGNKQMCPCYNNWKTXRXGPKCP* 421
Score = 46.9 bits (96), Expect(2) = 1e-033
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = +2 / +1
Query: 329 GSLQPHECGGRCAERCSATAYQKPCL 406
GSLQP EC RC RCSATAYQ+ L
Sbjct: 220 GSLQPAECSPRCTSRCSATAYQEAVL 297
>gb|AW226132.1|AW226132 ST77F12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST77F12, mRNA sequence
Length = 441
Score = 137 bits (294), Expect = 7e-032
Identities = 47/69 (68%), Positives = 56/69 (81%)
Frame = +2 / +2
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G+G L P ECGGRC+ RCSAT+++KPC+FFC+KCCA CLCVPPGT K CPCYNN KT
Sbjct: 200 GSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTSXXKQVCPCYNNXKT 379
Query: 503 KRGGPKCP* 529
++G KCP*
Sbjct: 380 QQGXXKCP* 406
>gb|BQ700423.1|BQ700423 NXRV105_E04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV105_E04 5' similar to Arabidopsis thaliana
sequence At1g74670 GAST1-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 407
Score = 94.5 bits (200), Expect(2) = 8e-031
Identities = 31/37 (83%), Positives = 33/37 (89%)
Frame = +2 / +1
Query: 419 KCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP* 529
KCCA CLCVPPGT GNK CPCYNNWKT++GGPKCP*
Sbjct: 160 KCCAKCLCVPPGTSGNKQVCPCYNNWKTQQGGPKCP* 270
Score = 59.3 bits (123), Expect(2) = 8e-031
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +2 / +2
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCR 418
G+G L P CGGRC+ RCSAT++ PC+FFC+
Sbjct: 65 GSGRLHPSXCGGRCSYRCSATSHXXPCMFFCQ 160
>gb|AW056753.1|AW056753 ST55D12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST55D12, mRNA sequence
Length = 505
Score = 128 bits (275), Expect = 3e-029
Identities = 43/65 (66%), Positives = 50/65 (76%)
Frame = +2 / +3
Query: 335 LQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGG 514
L+P EC C+ RCS T Y KPC+F+C+KCC CVPPGTYG+K CPCYN+WKTKRGG
Sbjct: 210 LRPEECPSACSYRCSKTQYLKPCMFYCQKCCLKYRCVPPGTYGHKEVCPCYNDWKTKRGG 389
Query: 515 PKCP* 529
KCP*
Sbjct: 390 XKCP* 404
>gb|BE662547.1|BE662547 ST87/ST87F05 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST87/ST87F05, mRNA sequence
Length = 403
Score = 127 bits (273), Expect = 5e-029
Identities = 44/55 (80%), Positives = 45/55 (81%)
Frame = +2 / +2
Query: 329 GSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNN 493
GSLQP EC RC RCSATAYQKPCLF+C KCCA CLCVPPGTY NK CPCYNN
Sbjct: 221 GSLQPAECSPRCTSRCSATAYQKPCLFYCNKCCAKCLCVPPGTYXNKQMCPCYNN 385
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 291,859,626
Number of Sequences: 355925
Number of extensions: 4178620
Number of successful extensions: 47627
Number of sequences better than 1.0e-020: 149
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 8950329070
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)