TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921718.2.1
(649 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO162271.1|CO162271 FLD1_34_F09.b1_A029 Root flooded Pin... 253 1e-066
gb|CO162352.1|CO162352 FLD1_34_F09.g1_A029 Root flooded Pin... 253 1e-066
gb|DR011092.1|DR011092 HEAT1_3_H07.b1_A029 Root at 37 C for... 253 1e-066
gb|DR023804.1|DR023804 STRS1_60_E01.b1_A034 Shoot tip pitch... 253 1e-066
gb|DR388885.1|DR388885 RTHG1_31_C03.b1_A029 Roots plus adde... 253 1e-066
gb|CF478957.1|CF478957 RTWW3_21_C10.b1_A022 Well-watered lo... 251 3e-066
gb|DR101537.1|DR101537 STRR1_74_B05.b1_A033 Stem Response R... 246 1e-064
gb|DR160314.1|DR160314 RTFE1_5_F12.b1_A029 Roots minus iron... 246 1e-064
gb|CF478251.1|CF478251 RTWW3_18_C07.b1_A022 Well-watered lo... 237 6e-062
gb|DR059112.1|DR059112 RTNIT1_15_F05.g1_A029 Roots minus ni... 230 9e-060
gb|DR110850.1|DR110850 RTS1_13_A01.g1_A029 Roots minus sulf... 230 9e-060
gb|DR741980.1|DR741980 RTCU1_1_A06.b1_A029 Roots plus added... 230 9e-060
gb|CF664834.1|CF664834 RTCNT1_12_F03.b1_A029 Root control P... 200 6e-051
gb|CF664918.1|CF664918 RTCNT1_12_F03.g1_A029 Root control P... 146 9e-045
gb|DR101601.1|DR101601 STRR1_74_B05.g1_A033 Stem Response R... 178 3e-044
gb|DR023886.1|DR023886 STRS1_60_E01.g1_A034 Shoot tip pitch... 122 2e-027
>gb|CO162271.1|CO162271 FLD1_34_F09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_F09_A029 3', mRNA sequence
Length = 705
Score = 253 bits (546), Expect = 1e-066
Identities = 98/119 (82%), Positives = 111/119 (93%)
Frame = +2 / +2
Query: 17 RLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHAC 196
+L+ GAH++GNV+V ETA IG+GCLIGPDVA+GPGCV+EAGVRLSRCTVMR R+K+HAC
Sbjct: 83 KLSFGAHIIGNVIVDETAQIGEGCLIGPDVAIGPGCVIEAGVRLSRCTVMRGVRIKKHAC 262
Query: 197 VSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
VS SIIGWH TVG+WARVENMT+LGEDVHVCDE+YSNGGVVLPHKEIKSSI KPEIVM*
Sbjct: 263 VSGSIIGWHCTVGQWARVENMTVLGEDVHVCDEVYSNGGVVLPHKEIKSSITKPEIVM* 439
Score = 182 bits (393), Expect = 1e-045
Identities = 84/119 (70%), Positives = 89/119 (74%)
Frame = -2 / -1
Query: 381 LPDHMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLL 202
L HMTISGL MLDLISL GSTTPPLL SSQT TSSPR VMFST AH PTV+CQPMML
Sbjct: 447 LNSHMTISGLVMLDLISLWGSTTPPLLYTSSQTCTSSPRTVMFSTLAHCPTVQCQPMMLP 268
Query: 201 ETQACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPD 25
ETQAC L MTVQRD TPAS T PGP ATSGP++ PSP+ AVS T T P AP+
Sbjct: 267 ETQACFLILTPLMTVQRDNLTPASITHPGPIATSGPIKHPSPI*AVSSTITFPIM*APN 91
>gb|CO162352.1|CO162352 FLD1_34_F09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_F09_A029 5', mRNA sequence
Length = 826
Score = 253 bits (546), Expect = 1e-066
Identities = 98/119 (82%), Positives = 111/119 (93%)
Frame = +2 / +2
Query: 17 RLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHAC 196
+L+ GAH++GNV+V ETA IG+GCLIGPDVA+GPGCV+EAGVRLSRCTVMR R+K+HAC
Sbjct: 296 KLSFGAHIIGNVIVDETAQIGEGCLIGPDVAIGPGCVIEAGVRLSRCTVMRGVRIKKHAC 475
Query: 197 VSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
VS SIIGWH TVG+WARVENMT+LGEDVHVCDE+YSNGGVVLPHKEIKSSI KPEIVM*
Sbjct: 476 VSGSIIGWHCTVGQWARVENMTVLGEDVHVCDEVYSNGGVVLPHKEIKSSITKPEIVM* 652
Score = 182 bits (393), Expect = 1e-045
Identities = 84/119 (70%), Positives = 89/119 (74%)
Frame = -2 / -2
Query: 381 LPDHMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLL 202
L HMTISGL MLDLISL GSTTPPLL SSQT TSSPR VMFST AH PTV+CQPMML
Sbjct: 660 LNSHMTISGLVMLDLISLWGSTTPPLLYTSSQTCTSSPRTVMFSTLAHCPTVQCQPMMLP 481
Query: 201 ETQACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPD 25
ETQAC L MTVQRD TPAS T PGP ATSGP++ PSP+ AVS T T P AP+
Sbjct: 480 ETQACFLILTPLMTVQRDNLTPASITHPGPIATSGPIKHPSPI*AVSSTITFPIM*APN 304
>gb|DR011092.1|DR011092 HEAT1_3_H07.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_3_H07_A029 3', mRNA sequence
Length = 730
Score = 253 bits (546), Expect = 1e-066
Identities = 98/119 (82%), Positives = 111/119 (93%)
Frame = +2 / +1
Query: 17 RLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHAC 196
+L+ GAH++GNV+V ETA IG+GCLIGPDVA+GPGCV+EAGVRLSRCTVMR R+K+HAC
Sbjct: 103 KLSFGAHIIGNVIVDETAQIGEGCLIGPDVAIGPGCVIEAGVRLSRCTVMRGVRIKKHAC 282
Query: 197 VSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
VS SIIGWH TVG+WARVENMT+LGEDVHVCDE+YSNGGVVLPHKEIKSSI KPEIVM*
Sbjct: 283 VSGSIIGWHCTVGQWARVENMTVLGEDVHVCDEVYSNGGVVLPHKEIKSSITKPEIVM* 459
Score = 182 bits (393), Expect = 1e-045
Identities = 84/119 (70%), Positives = 89/119 (74%)
Frame = -2 / -3
Query: 381 LPDHMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLL 202
L HMTISGL MLDLISL GSTTPPLL SSQT TSSPR VMFST AH PTV+CQPMML
Sbjct: 467 LNSHMTISGLVMLDLISLWGSTTPPLLYTSSQTCTSSPRTVMFSTLAHCPTVQCQPMMLP 288
Query: 201 ETQACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPD 25
ETQAC L MTVQRD TPAS T PGP ATSGP++ PSP+ AVS T T P AP+
Sbjct: 287 ETQACFLILTPLMTVQRDNLTPASITHPGPIATSGPIKHPSPI*AVSSTITFPIM*APN 111
>gb|DR023804.1|DR023804 STRS1_60_E01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_60_E01_A034 3', mRNA sequence
Length = 830
Score = 253 bits (546), Expect = 1e-066
Identities = 98/119 (82%), Positives = 111/119 (93%)
Frame = +2 / +3
Query: 17 RLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHAC 196
+L+ GAH++GNV+V ETA IG+GCLIGPDVA+GPGCV+EAGVRLSRCTVMR R+K+HAC
Sbjct: 231 KLSFGAHIIGNVIVDETAQIGEGCLIGPDVAIGPGCVIEAGVRLSRCTVMRGVRIKKHAC 410
Query: 197 VSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
VS SIIGWH TVG+WARVENMT+LGEDVHVCDE+YSNGGVVLPHKEIKSSI KPEIVM*
Sbjct: 411 VSGSIIGWHCTVGQWARVENMTVLGEDVHVCDEVYSNGGVVLPHKEIKSSITKPEIVM* 587
Score = 182 bits (393), Expect = 1e-045
Identities = 84/119 (70%), Positives = 89/119 (74%)
Frame = -2 / -2
Query: 381 LPDHMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLL 202
L HMTISGL MLDLISL GSTTPPLL SSQT TSSPR VMFST AH PTV+CQPMML
Sbjct: 595 LNSHMTISGLVMLDLISLWGSTTPPLLYTSSQTCTSSPRTVMFSTLAHCPTVQCQPMMLP 416
Query: 201 ETQACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPD 25
ETQAC L MTVQRD TPAS T PGP ATSGP++ PSP+ AVS T T P AP+
Sbjct: 415 ETQACFLILTPLMTVQRDNLTPASITHPGPIATSGPIKHPSPI*AVSSTITFPIM*APN 239
>gb|DR388885.1|DR388885 RTHG1_31_C03.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_31_C03_A029 3', mRNA sequence
Length = 793
Score = 253 bits (546), Expect = 1e-066
Identities = 98/119 (82%), Positives = 111/119 (93%)
Frame = +2 / -3
Query: 17 RLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHAC 196
+L+ GAH++GNV+V ETA IG+GCLIGPDVA+GPGCV+EAGVRLSRCTVMR R+K+HAC
Sbjct: 440 KLSFGAHIIGNVIVDETAQIGEGCLIGPDVAIGPGCVIEAGVRLSRCTVMRGVRIKKHAC 261
Query: 197 VSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
VS SIIGWH TVG+WARVENMT+LGEDVHVCDE+YSNGGVVLPHKEIKSSI KPEIVM*
Sbjct: 260 VSGSIIGWHCTVGQWARVENMTVLGEDVHVCDEVYSNGGVVLPHKEIKSSITKPEIVM* 84
Score = 182 bits (393), Expect = 1e-045
Identities = 84/119 (70%), Positives = 89/119 (74%)
Frame = -2 / +1
Query: 381 LPDHMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLL 202
L HMTISGL MLDLISL GSTTPPLL SSQT TSSPR VMFST AH PTV+CQPMML
Sbjct: 76 LNSHMTISGLVMLDLISLWGSTTPPLLYTSSQTCTSSPRTVMFSTLAHCPTVQCQPMMLP 255
Query: 201 ETQACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPD 25
ETQAC L MTVQRD TPAS T PGP ATSGP++ PSP+ AVS T T P AP+
Sbjct: 256 ETQACFLILTPLMTVQRDNLTPASITHPGPIATSGPIKHPSPI*AVSSTITFPIM*APN 432
>gb|CF478957.1|CF478957 RTWW3_21_C10.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_C10_A022 3', mRNA sequence
Length = 733
Score = 251 bits (543), Expect = 3e-066
Identities = 98/119 (82%), Positives = 110/119 (92%)
Frame = +2 / +1
Query: 17 RLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHAC 196
+L+ GAH+ GNV+V ETA IG+GCLIGPDVA+GPGCV+EAGVRLSRCTVMR R+K+HAC
Sbjct: 76 KLSFGAHIXGNVIVDETAQIGEGCLIGPDVAIGPGCVIEAGVRLSRCTVMRGVRIKKHAC 255
Query: 197 VSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
VS SIIGWH TVG+WARVENMT+LGEDVHVCDE+YSNGGVVLPHKEIKSSI KPEIVM*
Sbjct: 256 VSGSIIGWHCTVGQWARVENMTVLGEDVHVCDEVYSNGGVVLPHKEIKSSITKPEIVM* 432
Score = 182 bits (393), Expect = 1e-045
Identities = 84/119 (70%), Positives = 89/119 (74%)
Frame = -2 / -3
Query: 381 LPDHMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLL 202
L HMTISGL MLDLISL GSTTPPLL SSQT TSSPR VMFST AH PTV+CQPMML
Sbjct: 440 LNSHMTISGLVMLDLISLWGSTTPPLLYTSSQTCTSSPRTVMFSTLAHCPTVQCQPMMLP 261
Query: 201 ETQACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPD 25
ETQAC L MTVQRD TPAS T PGP ATSGP++ PSP+ AVS T T P AP+
Sbjct: 260 ETQACFLILTPLMTVQRDNLTPASITHPGPIATSGPIKHPSPI*AVSSTITFPIM*APN 84
>gb|DR101537.1|DR101537 STRR1_74_B05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_B05_A033 3', mRNA sequence
Length = 858
Score = 246 bits (531), Expect = 1e-064
Identities = 96/119 (80%), Positives = 110/119 (92%)
Frame = +2 / +2
Query: 17 RLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHAC 196
+LA+G +++GNV+V TA IG+GCLIGPDVA+GPGC +EAGVRLSRCT+MR R+K+HAC
Sbjct: 140 KLATGVNIVGNVIVDSTAQIGEGCLIGPDVAIGPGCAIEAGVRLSRCTIMRGVRIKKHAC 319
Query: 197 VSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
VS SIIGWHSTVG+WARVENMTILGEDVHV DE+YSNGGVVLPHKEIKSSILKPEIVM*
Sbjct: 320 VSGSIIGWHSTVGQWARVENMTILGEDVHVSDEVYSNGGVVLPHKEIKSSILKPEIVM* 496
Score = 191 bits (411), Expect = 5e-048
Identities = 83/123 (67%), Positives = 94/123 (76%)
Frame = -2 / -1
Query: 381 LPDHMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLL 202
L +HMTISGLR+LDLISL G TTPPLL SS+TWTSSP +VMFSTRAH PTVECQPM+L
Sbjct: 504 LSNHMTISGLRILDLISL*GRTTPPLLYTSSETWTSSPNIVMFSTRAHWPTVECQPMILP 325
Query: 201 ETQACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPDA 22
+TQAC L R R+ V RD TPAS QPGP ATSGP+RQPSP+ AV T T P P A
Sbjct: 324 DTQACFLMRTPRIMVHRDSLTPASIAQPGPMATSGPIRQPSPICAVLSTITFPTMLTPVA 145
Query: 21 SLA 13
+L+
Sbjct: 144 NLS 136
>gb|DR160314.1|DR160314 RTFE1_5_F12.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_5_F12_A029 3', mRNA sequence
Length = 734
Score = 246 bits (531), Expect = 1e-064
Identities = 96/119 (80%), Positives = 110/119 (92%)
Frame = +2 / +1
Query: 17 RLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHAC 196
+LA+G +++GNV+V TA IG+GCLIGPDVA+GPGC +EAGVRLSRCT+MR R+K+HAC
Sbjct: 4 KLATGVNIVGNVIVDSTAQIGEGCLIGPDVAIGPGCAIEAGVRLSRCTIMRGVRIKKHAC 183
Query: 197 VSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
VS SIIGWHSTVG+WARVENMTILGEDVHV DE+YSNGGVVLPHKEIKSSILKPEIVM*
Sbjct: 184 VSGSIIGWHSTVGQWARVENMTILGEDVHVSDEVYSNGGVVLPHKEIKSSILKPEIVM* 360
Score = 190 bits (410), Expect = 7e-048
Identities = 83/122 (68%), Positives = 93/122 (76%)
Frame = -2 / -1
Query: 381 LPDHMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLL 202
L +HMTISGLR+LDLISL G TTPPLL SS+TWTSSP +VMFSTRAH PTVECQPM+L
Sbjct: 368 LSNHMTISGLRILDLISL*GRTTPPLLYTSSETWTSSPNIVMFSTRAHWPTVECQPMILP 189
Query: 201 ETQACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPDA 22
+TQAC L R R+ V RD TPAS QPGP ATSGP+RQPSP+ AV T T P P A
Sbjct: 188 DTQACFLMRTPRIMVHRDSLTPASIAQPGPMATSGPIRQPSPICAVLSTITFPTMLTPVA 9
Query: 21 SL 16
+L
Sbjct: 8 NL 3
>gb|CF478251.1|CF478251 RTWW3_18_C07.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_18_C07_A022 3', mRNA sequence
Length = 573
Score = 237 bits (512), Expect = 6e-062
Identities = 93/109 (85%), Positives = 102/109 (93%)
Frame = +2 / +3
Query: 47 NVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHACVSSSIIGWHS 226
NV+V ETA IG+GCLIGPDVA+GPGCV+EAGVRLSRCTVMR R+K+HACVS SIIGWH
Sbjct: 3 NVIVDETAQIGEGCLIGPDVAIGPGCVIEAGVRLSRCTVMRGVRIKKHACVSGSIIGWHC 182
Query: 227 TVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
TVG+WARVENMT+LGEDVHVCDE+YSNGGVVLPHKEIKSSI KPEIVM*
Sbjct: 183 TVGQWARVENMTVLGEDVHVCDEVYSNGGVVLPHKEIKSSITKPEIVM* 329
Score = 176 bits (378), Expect = 2e-043
Identities = 80/111 (72%), Positives = 85/111 (76%)
Frame = -2 / -3
Query: 381 LPDHMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLL 202
L HMTISGL +LDLISL GSTTPPLL SSQT TSSPR VMFST AH PTV+CQPMML
Sbjct: 337 LNSHMTISGLVILDLISLWGSTTPPLLYTSSQTCTSSPRTVMFSTLAHCPTVQCQPMMLP 158
Query: 201 ETQACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTST 49
ETQAC L MTVQRD TPAS T PGP ATSGP++ PSP+ AVS T T
Sbjct: 157 ETQACFLILTPLMTVQRDNLTPASITHPGPIATSGPIKHPSPI*AVSSTIT 5
>gb|DR059112.1|DR059112 RTNIT1_15_F05.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_15_F05_A029 5', mRNA sequence
Length = 716
Score = 230 bits (496), Expect = 9e-060
Identities = 89/118 (75%), Positives = 104/118 (88%)
Frame = +2 / -3
Query: 20 LASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHACV 199
LASG+ GNVL+ E+ IG+GCLIGPDV++GPGC++EAGVRLS C +M R+K+HACV
Sbjct: 420 LASGSQFQGNVLIDESVQIGEGCLIGPDVSIGPGCIIEAGVRLSNCAIMSGVRIKKHACV 241
Query: 200 SSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
S SI+GWHSTVG+WAR ENMTILGEDVH+ DEIYSNGGVVLPHKEIKS+ILKPEIVM*
Sbjct: 240 SWSIVGWHSTVGQWARAENMTILGEDVHISDEIYSNGGVVLPHKEIKSNILKPEIVM* 67
Score = 162 bits (348), Expect = 2e-039
Identities = 76/118 (64%), Positives = 84/118 (71%)
Frame = -2 / +2
Query: 372 HMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLLETQ 193
HMTISGLRMLDLISL GSTTPPLL ISS TSSP++V+FS AH PTVECQP ML ETQ
Sbjct: 68 HMTISGLRMLDLISL*GSTTPPLLYISSLICTSSPKIVIFSALAHCPTVECQPTMLHETQ 247
Query: 192 ACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPDAS 19
AC L + Q + TPAS QPGP TSGP+RQPSP+ +S STLP P AS
Sbjct: 248 ACFLILTPLIIAQFESLTPASIIQPGPIETSGPIRQPSPIWTLSSMSTLP*N*EPLAS 421
>gb|DR110850.1|DR110850 RTS1_13_A01.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_13_A01_A029 5', mRNA sequence
Length = 665
Score = 230 bits (496), Expect = 9e-060
Identities = 89/118 (75%), Positives = 104/118 (88%)
Frame = +2 / -2
Query: 20 LASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHACV 199
LASG+ GNVL+ E+ IG+GCLIGPDV++GPGC++EAGVRLS C +M R+K+HACV
Sbjct: 475 LASGSQFQGNVLIDESVQIGEGCLIGPDVSIGPGCIIEAGVRLSNCAIMSGVRIKKHACV 296
Query: 200 SSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
S SI+GWHSTVG+WAR ENMTILGEDVH+ DEIYSNGGVVLPHKEIKS+ILKPEIVM*
Sbjct: 295 SWSIVGWHSTVGQWARAENMTILGEDVHISDEIYSNGGVVLPHKEIKSNILKPEIVM* 122
Score = 162 bits (348), Expect = 2e-039
Identities = 76/118 (64%), Positives = 84/118 (71%)
Frame = -2 / +3
Query: 372 HMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLLETQ 193
HMTISGLRMLDLISL GSTTPPLL ISS TSSP++V+FS AH PTVECQP ML ETQ
Sbjct: 123 HMTISGLRMLDLISL*GSTTPPLLYISSLICTSSPKIVIFSALAHCPTVECQPTMLHETQ 302
Query: 192 ACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPDAS 19
AC L + Q + TPAS QPGP TSGP+RQPSP+ +S STLP P AS
Sbjct: 303 ACFLILTPLIIAQFESLTPASIIQPGPIETSGPIRQPSPIWTLSSMSTLP*N*EPLAS 476
>gb|DR741980.1|DR741980 RTCU1_1_A06.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_1_A06_A029 3', mRNA sequence
Length = 557
Score = 230 bits (496), Expect = 9e-060
Identities = 89/118 (75%), Positives = 104/118 (88%)
Frame = +2 / +1
Query: 20 LASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHACV 199
LASG+ GNVL+ E+ IG+GCLIGPDV++GPGC++EAGVRLS C +M R+K+HACV
Sbjct: 52 LASGSQFQGNVLIDESVQIGEGCLIGPDVSIGPGCIIEAGVRLSNCAIMSGVRIKKHACV 231
Query: 200 SSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 373
S SI+GWHSTVG+WAR ENMTILGEDVH+ DEIYSNGGVVLPHKEIKS+ILKPEIVM*
Sbjct: 232 SWSIVGWHSTVGQWARAENMTILGEDVHISDEIYSNGGVVLPHKEIKSNILKPEIVM* 405
Score = 162 bits (348), Expect = 2e-039
Identities = 76/118 (64%), Positives = 84/118 (71%)
Frame = -2 / -1
Query: 372 HMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLLETQ 193
HMTISGLRMLDLISL GSTTPPLL ISS TSSP++V+FS AH PTVECQP ML ETQ
Sbjct: 404 HMTISGLRMLDLISL*GSTTPPLLYISSLICTSSPKIVIFSALAHCPTVECQPTMLHETQ 225
Query: 192 ACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPDAS 19
AC L + Q + TPAS QPGP TSGP+RQPSP+ +S STLP P AS
Sbjct: 224 ACFLILTPLIIAQFESLTPASIIQPGPIETSGPIRQPSPIWTLSSMSTLP*N*EPLAS 51
>gb|CF664834.1|CF664834 RTCNT1_12_F03.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_12_F03_A029 3', mRNA sequence
Length = 637
Score = 200 bits (432), Expect = 6e-051
Identities = 79/92 (85%), Positives = 87/92 (94%)
Frame = +2 / +2
Query: 104 VAVGPGCVVEAGVRLSRCTVMRAARVKQHACVSSSIIGWHSTVGKWARVENMTILGEDVH 283
VA+GPGCV+EAGVRLSRCT+MR R+K+HACVS SIIGWHSTVG+WARVENMTILGEDVH
Sbjct: 2 VAIGPGCVIEAGVRLSRCTIMRGVRIKKHACVSGSIIGWHSTVGQWARVENMTILGEDVH 181
Query: 284 VCDEIYSNGGVVLPHKEIKSSILKPEIVM*SG 379
V DE+Y+NGGVVLPHKEIKSSILKPEIVM* G
Sbjct: 182 VSDEVYTNGGVVLPHKEIKSSILKPEIVM*LG 277
Score = 161 bits (346), Expect = 4e-039
Identities = 69/93 (74%), Positives = 76/93 (81%)
Frame = -2 / -2
Query: 381 LPDHMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLL 202
LP+HMTISGLRMLDLISL G TTPPL+ SS+TWTSSP +VMFSTRAH PTVECQPM+L
Sbjct: 279 LPNHMTISGLRMLDLISL*GRTTPPLVYTSSETWTSSPNIVMFSTRAH*PTVECQPMILP 100
Query: 201 ETQACCLTRAARMTVQRDRRTPASTTQPGPTAT 103
+TQAC L R R+ V RD TPAS TQPGP AT
Sbjct: 99 DTQACFLMRTPRIMVHRDSLTPASITQPGPMAT 1
>gb|CF664918.1|CF664918 RTCNT1_12_F03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_12_F03_A029 5', mRNA sequence
Length = 552
Score = 146 bits (314), Expect(2) = 9e-045
Identities = 54/74 (72%), Positives = 67/74 (90%)
Frame = +2 / +2
Query: 17 RLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHAC 196
+LA+G +++GNV+V TA IG+GCLIGPDVA+GPGCV+EAGVRLSRCT+MR R+K+HAC
Sbjct: 266 KLATGVNIVGNVIVDSTAQIGEGCLIGPDVAIGPGCVIEAGVRLSRCTIMRGVRIKKHAC 445
Query: 197 VSSSIIGWHSTVGK 238
VS SIIGWHSTVG+
Sbjct: 446 VSGSIIGWHSTVGQ 487
Score = 106 bits (227), Expect(2) = 3e-030
Identities = 45/74 (60%), Positives = 53/74 (71%)
Frame = -2 / -1
Query: 234 PTVECQPMMLLETQACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCT 55
PTVECQPM+L +TQAC L R R+ V RD TPAS TQPGP ATSGP++QPSP+ AV T
Sbjct: 483 PTVECQPMILPDTQACFLMRTPRIMVHRDSLTPASITQPGPMATSGPIKQPSPICAVLST 304
Query: 54 STLPRTCAPDASLA 13
T P P A+L+
Sbjct: 303 ITFPTMLTPVANLS 262
Score = 53.8 bits (111), Expect(2) = 9e-045
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +2 / +3
Query: 236 KWARVENMTILGEDVHVCDEIY 301
KWARVENMTILGEDVHV DE+Y
Sbjct: 486 KWARVENMTILGEDVHVSDEVY 551
Score = 45.1 bits (92), Expect(2) = 3e-030
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = -2 / -3
Query: 294 SSQTWTSSPRMVMFSTRAHL 235
SS+TWTSSP +VMFSTRAHL
Sbjct: 544 SSETWTSSPNIVMFSTRAHL 485
>gb|DR101601.1|DR101601 STRR1_74_B05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_B05_A033 5', mRNA sequence
Length = 745
Score = 178 bits (384), Expect = 3e-044
Identities = 67/88 (76%), Positives = 80/88 (90%)
Frame = +2 / +2
Query: 17 RLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHAC 196
+LA+G +++GNV+V TA IG+GCLIGPDVA+GPGC +EAGVRLSRCT+MR R+K+HAC
Sbjct: 482 KLATGVNIVGNVIVDSTAQIGEGCLIGPDVAIGPGCAIEAGVRLSRCTIMRGVRIKKHAC 661
Query: 197 VSSSIIGWHSTVGKWARVENMTILGEDV 280
VS SIIGWHSTVG+WARVENMTILGEDV
Sbjct: 662 VSGSIIGWHSTVGQWARVENMTILGEDV 745
Score = 133 bits (285), Expect = 1e-030
Identities = 57/89 (64%), Positives = 65/89 (73%)
Frame = -2 / -2
Query: 279 TSSPRMVMFSTRAHLPTVECQPMMLLETQACCLTRAARMTVQRDRRTPASTTQPGPTATS 100
TSSP +VMFSTRAH PTVECQPM+L +TQAC L R R+ V RD TPAS QPGP ATS
Sbjct: 744 TSSPNIVMFSTRAHWPTVECQPMILPDTQACFLMRTPRIMVHRDSLTPASIAQPGPMATS 565
Query: 99 GPMRQPSPMTAVSCTSTLPRTCAPDASLA 13
GP+RQPSP+ AV T T P P A+L+
Sbjct: 564 GPIRQPSPICAVLSTITFPTMLTPVANLS 478
>gb|DR023886.1|DR023886 STRS1_60_E01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_60_E01_A034 5', mRNA sequence
Length = 537
Score = 122 bits (261), Expect = 2e-027
Identities = 46/62 (74%), Positives = 56/62 (90%)
Frame = +2 / +1
Query: 17 RLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVKQHAC 196
+L+ GAH++GNV+V ETA IG+GCLIGPDVA+GPGCV+EAGVRLS CTVMR R+K+HAC
Sbjct: 349 KLSFGAHIIGNVIVDETAHIGEGCLIGPDVAIGPGCVIEAGVRLSLCTVMRGVRIKKHAC 528
Query: 197 VS 202
VS
Sbjct: 529 VS 534
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 277,793,759
Number of Sequences: 355925
Number of extensions: 3735194
Number of successful extensions: 41066
Number of sequences better than 1.0e-020: 19
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 8788576135
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)