TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750927.2.1
(1331 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U42400.1|PRU42400 Pinus radiata putative MADS-box family... 301 3e-084
emb|Y09611.1|PRMADS1 P.resinosa mRNA for MADS-box protein 301 1e-083
gb|U76726.1|PRU76726 Pinus radiata MADS-box protein (PrMADS... 159 4e-075
gb|AW010398.1|AW010398 ST06D02 Pine TriplEx shoot tip libra... 161 3e-066
gb|BQ290846.1|BQ290846 NXRV050_D03_F NXRV (Nsf Xylem Root w... 161 4e-065
gb|U42399.1|PRU42399 Pinus radiata putative MADS-box family... 138 3e-064
gb|CF399403.1|CF399403 RTDS3_28_D02.g1_A022 Drought-stresse... 138 8e-054
gb|AF006210.1|AF006210 Pinus resinosa MADS box transcriptio... 138 5e-052
gb|AF023615.1|AF023615 Pinus radiata MADS box protein mRNA,... 138 1e-051
gb|CF665739.1|CF665739 RTCNT1_18_D05.b1_A029 Root control P... 134 6e-051
gb|DR167232.1|DR167232 RTPHOS1_17_B11.g1_A029 Roots minus p... 133 2e-048
gb|DR060889.1|DR060889 RTNIT1_30_D12.g1_A029 Roots minus ni... 127 2e-047
gb|CO364965.1|CO364965 RTK1_22_G09.g1_A029 Roots minus pota... 127 5e-047
gb|BQ654531.1|BQ654531 NXRV081_H04_F NXRV (Nsf Xylem Root w... 161 1e-046
gb|DR090702.1|DR090702 RTAL1_16_G11.g1_A029 Roots plus adde... 127 2e-046
gb|CF392697.1|CF392697 RTDR3_5_H09.g1_A022 Loblolly pine ro... 140 2e-046
gb|DR079072.1|DR079072 RTFEPL1_8_G11.g1_A029 Roots plus add... 127 9e-046
gb|CX650850.1|CX650850 COLD1_48_B09.g1_A029 Root cold Pinus... 120 3e-045
gb|U90345.1|PRU90345 Pinus radiata putative MADS box transc... 119 6e-045
gb|DR058453.1|DR058453 RTNIT1_11_H04.g1_A029 Roots minus ni... 120 6e-045
gb|DR012819.1|DR012819 HEAT1_15_E08.b1_A029 Root at 37 C fo... 119 6e-045
gb|CO170901.1|CO170901 NDL1_17_E10.g1_A029 Needles control ... 119 6e-045
gb|DR069454.1|DR069454 RTDK1_7_H04.b1_A029 Roots, dark Pinu... 116 3e-044
gb|CX650456.1|CX650456 COLD1_45_F12.g1_A029 Root cold Pinus... 133 4e-044
gb|CF401468.1|CF401468 RTWW1_12_E09.g1_A015 Well-watered lo... 133 4e-044
gb|CO163263.1|CO163263 FLD1_40_B04.g1_A029 Root flooded Pin... 127 1e-043
gb|U90344.1|PRU90344 Pinus radiata putative MADS box transc... 121 2e-043
gb|DR384822.1|DR384822 RTHG1_4_G03.g1_A029 Roots plus added... 121 3e-043
gb|CF475501.1|CF475501 RTWW2_12_G12.g1_A021 Well-watered lo... 121 7e-043
gb|CO363306.1|CO363306 RTK1_8_H10.g1_A029 Roots minus potas... 111 9e-043
gb|CF477439.1|CF477439 RTWW3_7_F06.g1_A022 Well-watered lob... 140 3e-042
gb|CO169756.1|CO169756 NDL1_9_A05.g1_A029 Needles control P... 118 6e-042
gb|CF476348.1|CF476348 RTWW2_22_G12.g1_A021 Well-watered lo... 109 8e-042
gb|BX252374.1|BX252374 BX252374 Pinus pinaster differenciat... 122 8e-042
gb|U90346.1|PRU90346 Pinus radiata putative MADS box transc... 120 2e-041
gb|CO364847.1|CO364847 RTK1_22_D10.b1_A029 Roots minus pota... 116 2e-041
gb|CV031753.1|CV031753 RTNACL1_3_B05.g1_A029 Roots plus add... 116 2e-041
gb|DR058437.1|DR058437 RTNIT1_11_F11.g1_A029 Roots minus ni... 116 2e-041
gb|DR090622.1|DR090622 RTAL1_16_G11.b1_A029 Roots plus adde... 108 3e-041
gb|CO175129.1|CO175129 NDL1_48_D06.g1_A029 Needles control ... 108 3e-041
gb|DR109660.1|DR109660 RTS1_3_G12.g1_A029 Roots minus sulfu... 114 4e-041
gb|CO201105.1|CO201105 RTCNT2_3_D12.g1_A029 Root control 2 ... 116 6e-041
gb|U90349.1|PRU90349 Pinus radiata putative MADS box transc... 167 1e-040
gb|CX645252.1|CX645252 COLD1_1_H11.b1_A029 Root cold Pinus ... 114 1e-040
gb|DR177222.1|DR177222 RTMNUT1_3_H10.g1_A029 Roots minus mi... 117 2e-040
gb|CX645838.1|CX645838 COLD1_5_D01.g1_A029 Root cold Pinus ... 117 2e-040
gb|CO365540.1|CO365540 RTK1_17_D10.g1_A029 Roots minus pota... 133 7e-040
gb|CO197079.1|CO197079 GEO1_3_F06.g1_A029 Root gravitropism... 120 2e-039
gb|DR178004.1|DR178004 RTMNUT1_8_E05.g1_A029 Roots minus mi... 116 5e-039
gb|U90347.1|PRU90347 Pinus radiata putative MADS box transc... 112 8e-039
gb|CX713558.1|CX713558 RTPQ1_10_E02.g1_A032 Roots treated w... 127 1e-037
gb|CF394057.1|CF394057 RTDS2_3_D04.b1_A021 Drought-stressed... 116 2e-037
gb|CO200411.1|CO200411 GEO2_7_G03.b1_A032 Root gravitropism... 116 6e-037
gb|DR051726.1|DR051726 RTBOR1_32_A11.b1_A029 Roots plus add... 114 1e-036
gb|BE451798.1|BE451798 NXCI_002_D03_F NXCI (Nsf Xylem Compr... 154 1e-036
gb|DR051801.1|DR051801 RTBOR1_32_A11.g1_A029 Roots plus add... 114 1e-036
gb|DR168055.1|DR168055 RTPHOS1_22_H02.g1_A029 Roots minus p... 118 3e-035
gb|DR069761.1|DR069761 RTDK1_9_F10.b1_A029 Roots, dark Pinu... 100 4e-035
gb|DR742217.1|DR742217 RTCU1_2_C05.g1_A029 Roots plus added... 100 4e-035
gb|CX715901.1|CX715901 RTPQ1_37_G08.g1_A032 Roots treated w... 100 4e-035
gb|DR098149.1|DR098149 STRR1_39_A06.g1_A033 Stem Response R... 100 1e-034
gb|CV035951.1|CV035951 RTNACL1_43_D02.g1_A029 Roots plus ad... 102 1e-034
gb|BF517018.1|BF517018 NXSI_008_C03_F NXSI (Nsf Xylem Side ... 146 3e-034
gb|DR112977.1|DR112977 RTS1_32_C04.b1_A029 Roots minus sulf... 134 5e-034
gb|BG318417.1|BG318417 NXPV_013_D07_F NXPV (Nsf Xylem Plani... 121 1e-033
gb|CX713480.1|CX713480 RTPQ1_9_E04.g1_A032 Roots treated wi... 127 2e-033
gb|AF120097.1|AF120097 Pinus radiata DEF/GLO-like protein (... 105 3e-033
gb|BX249866.1|BX249866 BX249866 Pinus pinaster differenciat... 97 3e-033
gb|CO200495.1|CO200495 GEO2_7_G03.g1_A032 Root gravitropism... 116 4e-033
gb|BX249249.1|BX249249 BX249249 Pinus pinaster differenciat... 117 6e-033
gb|DR016118.1|DR016118 STRS1_7_G02.g1_A034 Shoot tip pitch ... 86 9e-033
gb|CV034382.1|CV034382 RTNACL1_40_C07.g1_A029 Roots plus ad... 100 6e-032
gb|CF389480.1|CF389480 RTDR2_7_A07.g1_A021 Loblolly pine ro... 100 6e-032
gb|DR742675.1|DR742675 RTCU1_5_F06.g2_A029 Roots plus added... 100 6e-032
dbj|DD014347.1| Compositions and Methods for the Modificati... 106 8e-032
gb|CF388137.1|CF388137 RTDR2_1_D05.b1_A021 Loblolly pine ro... 138 8e-032
gb|CF389852.1|CF389852 RTDR2_11_B08.b1_A021 Loblolly pine r... 138 8e-032
gb|CF389963.1|CF389963 RTDR2_11_B08.g1_A021 Loblolly pine r... 138 8e-032
gb|CO161503.1|CO161503 FLD1_29_F09.b1_A029 Root flooded Pin... 138 8e-032
gb|CO161575.1|CO161575 FLD1_29_F09.g1_A029 Root flooded Pin... 138 8e-032
gb|CX713803.1|CX713803 RTPQ1_13_F12.b1_A032 Roots treated w... 138 8e-032
gb|DR013883.1|DR013883 HEAT1_22_D05.b1_A029 Root at 37 C fo... 138 8e-032
gb|DR112834.1|DR112834 RTS1_31_A11.b1_A029 Roots minus sulf... 100 1e-031
gb|CX650315.1|CX650315 COLD1_44_H01.g1_A029 Root cold Pinus... 100 1e-031
gb|CF671036.1|CF671036 RTCNT1_54_F06.b1_A029 Root control P... 100 1e-031
gb|CF671146.1|CF671146 RTCNT1_55_C04.b1_A029 Root control P... 100 1e-031
gb|DR169156.1|DR169156 RTPHOS1_30_A07.g1_A029 Roots minus p... 100 3e-031
gb|DR014329.1|DR014329 HEAT1_24_G07.g1_A029 Root at 37 C fo... 100 5e-031
gb|CF390951.1|CF390951 RTDR3_2_E09.g1_A022 Loblolly pine ro... 98 7e-031
gb|DR079733.1|DR079733 RTFEPL1_17_F02.b1_A029 Roots plus ad... 74 9e-031
gb|AW010611.1|AW010611 ST08G08 Pine TriplEx shoot tip libra... 115 1e-030
gb|CX649779.1|CX649779 COLD1_41_A09.g1_A029 Root cold Pinus... 97 1e-030
gb|CV034312.1|CV034312 RTNACL1_40_C07.b1_A029 Roots plus ad... 95 2e-030
gb|DR049854.1|DR049854 RTBOR1_19_B11.g1_A029 Roots plus add... 95 2e-030
gb|AA556486.1|AA556486 341 Loblolly pine C Pinus taeda cDNA... 117 2e-030
gb|DR091107.1|DR091107 RTAL1_19_A05.g1_A029 Roots plus adde... 95 2e-030
gb|BQ695742.1|BQ695742 NXPV_032_B10_F NXPV (Nsf Xylem Plani... 100 3e-030
gb|BG039483.1|BG039483 NXSI_099_F04_F NXSI (Nsf Xylem Side ... 100 5e-030
gb|CO165497.1|CO165497 FLD1_54_H10.g1_A029 Root flooded Pin... 95 9e-030
gb|CX649703.1|CX649703 COLD1_41_A09.b1_A029 Root cold Pinus... 95 9e-030
gb|BG318835.1|BG318835 NXPV_020_D12_F NXPV (Nsf Xylem Plani... 127 9e-030
gb|DR177921.1|DR177921 RTMNUT1_8_E05.b1_A029 Roots minus mi... 78 2e-029
gb|CF394132.1|CF394132 RTDS2_3_D04.g1_A021 Drought-stressed... 78 2e-029
gb|CX650380.1|CX650380 COLD1_45_F12.b1_A029 Root cold Pinus... 84 3e-029
gb|CD028456.1|CD028456 NXSI_119_C03_F NXSI (Nsf Xylem Side ... 100 4e-029
gb|DR016089.1|DR016089 STRS1_7_C12.g1_A034 Shoot tip pitch ... 91 8e-029
gb|BQ696809.1|BQ696809 NXPV_045_E02_F NXPV (Nsf Xylem Plani... 127 1e-028
gb|BG040082.1|BG040082 NXSI_106_C09_F NXSI (Nsf Xylem Side ... 102 1e-028
gb|DR058722.1|DR058722 RTNIT1_13_B06.g1_A029 Roots minus ni... 89 2e-028
gb|DR013069.1|DR013069 HEAT1_16_F12.g1_A029 Root at 37 C fo... 89 5e-028
gb|AW290406.1|AW290406 NXNV019H03F Nsf Xylem Normal wood Ve... 125 8e-028
gb|CD027064.1|CD027064 NXNV019H03 Nsf Xylem Normal wood Ver... 125 8e-028
gb|CV033324.1|CV033324 RTNACL1_33_G03.g1_A029 Roots plus ad... 125 8e-028
gb|AW587800.1|AW587800 ST67B08 Pine TriplEx shoot tip libra... 122 4e-027
gb|BF609658.1|BF609658 NXSI_047_G05_F NXSI (Nsf Xylem Side ... 100 9e-027
gb|AL749789.1|AL749789 AL749789 AS Pinus pinaster cDNA clon... 121 1e-026
gb|BG625803.1|BG625803 NXPV_066_C06_F NXPV (Nsf Xylem Plani... 121 1e-026
gb|AW226013.1|AW226013 ST76C10 Pine TriplEx shoot tip libra... 95 3e-026
gb|CO201026.1|CO201026 RTCNT2_3_D12.b1_A029 Root control 2 ... 73 4e-026
gb|AW981881.1|AW981881 PC19G08 Pine TriplEx pollen cone lib... 118 7e-026
gb|U90348.1|PRU90348 Pinus radiata putative MADS box transc... 116 3e-025
gb|CF668263.1|CF668263 RTCNT1_35_A03.g1_A029 Root control P... 116 5e-025
gb|CO157702.1|CO157702 FLD1_1_B06.g1_A029 Root flooded Pinu... 115 9e-025
gb|CO367965.1|CO367965 RTK1_37_F12.g1_A029 Roots minus pota... 115 9e-025
gb|DR072089.1|DR072089 RTDK1_24_B10.b1_A029 Roots, dark Pin... 115 9e-025
gb|DR072321.1|DR072321 RTDK1_25_B07.g1_A029 Roots, dark Pin... 115 9e-025
gb|DR167777.1|DR167777 RTPHOS1_21_A12.b1_A029 Roots minus p... 115 9e-025
gb|DR178023.1|DR178023 RTMNUT1_8_F12.g1_A029 Roots minus mi... 115 9e-025
gb|CF385094.1|CF385094 RTDR1_1_A12.g1_A015 Loblolly pine ro... 68 1e-024
gb|DR120726.1|DR120726 RTMG1_31_B11.g1_A029 Roots minus mag... 77 2e-024
gb|BF220652.1|BF220652 NXCI_151_A10_F NXCI (Nsf Xylem Compr... 113 3e-024
gb|CF670638.1|CF670638 RTCNT1_51_C07.g1_A029 Root control P... 76 3e-024
gb|AW754659.1|AW754659 PC04G10 Pine TriplEx pollen cone lib... 112 4e-024
gb|DR081124.1|DR081124 RTFEPL1_27_C11.g1_A029 Roots plus ad... 112 4e-024
gb|BF778206.1|BF778206 NXSI_083_F09_F NXSI (Nsf Xylem Side ... 84 9e-024
gb|CF476374.1|CF476374 RTWW2_22_E12.g1_A021 Well-watered lo... 111 1e-023
gb|CF670172.1|CF670172 RTCNT1_48_B11.g1_A029 Root control P... 111 1e-023
gb|BE187247.1|BE187247 NXNV_76_C05_F Nsf Xylem Normal wood ... 111 2e-023
gb|CF671711.1|CF671711 RTCNT1_58_F11.g1_A029 Root control P... 66 2e-023
gb|BI643995.1|BI643995 NXPV_133_H06_F NXPV (Nsf Xylem Plani... 110 2e-023
gb|AL750172.1|AL750172 AL750172 AS Pinus pinaster cDNA clon... 109 4e-023
gb|CF398147.1|CF398147 RTDS3_21_G07.b1_A022 Drought-stresse... 73 4e-023
gb|CO170829.1|CO170829 NDL1_17_E10.b1_A029 Needles control ... 83 8e-023
gb|CF388230.1|CF388230 RTDR2_1_D05.g1_A021 Loblolly pine ro... 107 2e-022
gb|CX650775.1|CX650775 COLD1_48_B09.b1_A029 Root cold Pinus... 83 1e-021
gb|CV033251.1|CV033251 RTNACL1_33_G03.b1_A029 Roots plus ad... 103 3e-021
gb|AW985380.1|AW985380 NXNV_134_G01_F Nsf Xylem Normal wood... 102 5e-021
gb|BE644116.1|BE644116 NXCI_054_F11_F NXCI (Nsf Xylem Compr... 102 5e-021
gb|BF778396.1|BF778396 NXSI_082_G07_F NXSI (Nsf Xylem Side ... 102 5e-021
gb|BM134188.1|BM134188 NXLV_017_H01_F NXLV (Nsf Xylem Late ... 102 5e-021
gb|AL749853.1|AL749853 AL749853 AS Pinus pinaster cDNA clon... 102 6e-021
gb|CF386447.1|CF386447 RTDR1_14_B10.g1_A015 Loblolly pine r... 102 6e-021
gb|CO361066.1|CO361066 NDL2_2_B04.g1_A029 Needles control 2... 102 6e-021
>gb|U42400.1|PRU42400 Pinus radiata putative MADS-box family transcription factor
(PrMADS2) mRNA, complete cds
Length = 1064
Score = 301 bits (652), Expect(2) = 3e-084
Identities = 129/182 (70%), Positives = 152/182 (83%)
Frame = +2 / +2
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA
Sbjct: 95 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 274
Query: 392 GITKTLERYQHCCYNAQDSNGALSETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSV 571
G+ KTLERYQ C Y QD+ + E Q+W+QE+ KL+A+ E LQR+QRHLLGE+LGPLS+
Sbjct: 275 GMLKTLERYQKCSYVLQDATVSDREAQNWHQEVGKLKARVELLQRSQRHLLGEDLGPLSI 454
Query: 572 KELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERHLGEMNRQLKHKLEAEGCSNYRT 751
KELQQLE+QLE AL+ R RKTQ+M+E ++ELRRKER L E+N+ L+ KL+ +
Sbjct: 455 KELQQLERQLEVALTHVRSRKTQVMLEMMDELRRKERILQEVNKSLRKKLQEAEGQAFNA 634
Query: 752 LQ 757
+Q
Sbjct: 635 MQ 640
Score = 104 bits (221), Expect(3) = 2e-027
Identities = 52/113 (46%), Positives = 63/113 (55%)
Frame = -3 / -3
Query: 540 KCL*VRCKASNFALSFDISWYQL*VSESAPLES*AL*QQCWYLSKVFVMPALPNS*SLPR 361
KCL RCK+S A + S Q S S + S + Y S+V +PALPNS*S P
Sbjct: 423 KCLCDRCKSSTLAFNLPTS*CQFCASRSDTVASCNTYEHF*YRSRVLSIPALPNS*SFPL 244
Query: 360 LEKMMXXXXXXXXXXXXXAFLSRPLRRLEKVTWRLILFSIRLSSTRPLPMATY 202
LE ++ AF SRP RR E VTWRLILFSIR SSTRP P+ ++
Sbjct: 243 LENIISATSASHNTESSYAFFSRPFRRFENVTWRLILFSIRFSSTRPRPILSF 85
Score = 34.5 bits (69), Expect(3) = 2e-027
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = -3 / -3
Query: 702 LFISPRCRSFLRSSSTCSIISCVFLCLACDKA 607
LF S + RSFLRSSS S ++ VFL L C A
Sbjct: 585 LFTSCKIRSFLRSSSIISNMT*VFLDLTCVSA 490
Score = 32.2 bits (64), Expect(2) = 3e-084
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2 / +2
Query: 839 SVAMDCEPTLQIGY 880
S A+DCEPTLQIGY
Sbjct: 704 SNAVDCEPTLQIGY 745
Score = 29.0 bits (57), Expect(3) = 2e-027
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -3 / -3
Query: 879 YPICRVGSQSIATD 838
YPIC VGSQS A D
Sbjct: 744 YPICNVGSQSTAFD 703
>emb|Y09611.1|PRMADS1 P.resinosa mRNA for MADS-box protein
Length = 1073
Score = 301 bits (652), Expect(2) = 1e-083
Identities = 129/182 (70%), Positives = 152/182 (83%)
Frame = +2 / +1
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA
Sbjct: 76 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 255
Query: 392 GITKTLERYQHCCYNAQDSNGALSETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSV 571
G+ KTLERYQ C Y QD+ + E Q+W+QE+ KL+A+ E LQR+QRHLLGE+LGPLS+
Sbjct: 256 GMLKTLERYQKCSYVLQDATVSDREAQNWHQEVGKLKARVELLQRSQRHLLGEDLGPLSI 435
Query: 572 KELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERHLGEMNRQLKHKLEAEGCSNYRT 751
KELQQLE+QLE AL+ R RKTQ+M+E ++ELRRKER L E+N+ L+ KL+ +
Sbjct: 436 KELQQLERQLEVALTHVRSRKTQVMLEMMDELRRKERILQEVNKSLRKKLQEAEGQAFNA 615
Query: 752 LQ 757
+Q
Sbjct: 616 MQ 621
Score = 95.9 bits (203), Expect(3) = 6e-025
Identities = 51/110 (46%), Positives = 60/110 (54%)
Frame = -3 / -1
Query: 540 KCL*VRCKASNFALSFDISWYQL*VSESAPLES*AL*QQCWYLSKVFVMPALPNS*SLPR 361
KCL RCK+S A + S Q S S + S + Y S+V +PALPNS*S P
Sbjct: 404 KCLCDRCKSSTLAFNLPTS*CQFCASRSDTVASCNTYEHF*YRSRVLSIPALPNS*SFPL 225
Query: 360 LEKMMXXXXXXXXXXXXXAFLSRPLRRLEKVTWRLILFSIRLSSTRPLPM 211
LE ++ AF SRP RR E VT RLILFSIR SSTRP P+
Sbjct: 224 LENIISATSASHNTESSYAFFSRPFRRFENVT*RLILFSIRFSSTRPRPI 75
Score = 34.5 bits (69), Expect(3) = 6e-025
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = -3 / -1
Query: 702 LFISPRCRSFLRSSSTCSIISCVFLCLACDKA 607
LF S + RSFLRSSS S ++ VFL L C A
Sbjct: 566 LFTSCKMRSFLRSSSIISNMT*VFLDLTCVSA 471
Score = 29.9 bits (59), Expect(2) = 1e-083
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2 / +1
Query: 839 SVAMDCEPTLQIGY 880
S A+DCEPTLQ GY
Sbjct: 685 SNAVDCEPTLQTGY 726
Score = 28.6 bits (56), Expect(3) = 6e-025
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3 / -1
Query: 879 YPICRVGSQSIATD 838
YP+C VGSQS A D
Sbjct: 725 YPVCNVGSQSTAFD 684
>gb|U76726.1|PRU76726 Pinus radiata MADS-box protein (PrMADS3) mRNA, complete cds
Length = 1130
Score = 159 bits (341), Expect(3) = 4e-075
Identities = 66/81 (81%), Positives = 73/81 (90%)
Frame = +2 / +1
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRGRV+L+RIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF S+
Sbjct: 1 MGRGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFASS 180
Query: 392 GITKTLERYQHCCYNAQDSNG 454
+ KTLERY+ C Y QD+ G
Sbjct: 181 SMNKTLERYEKCSYAMQDTTG 243
Score = 136 bits (292), Expect(3) = 4e-075
Identities = 55/86 (63%), Positives = 74/86 (86%)
Frame = +2 / +1
Query: 464 ETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQL 643
E Q+W+QE++KL+ K E LQR+QRHLLGE+LGPL+VKELQQLE+QLE AL+ R RKTQ+
Sbjct: 256 EAQNWHQEVTKLKGKVELLQRSQRHLLGEDLGPLNVKELQQLERQLEVALTHLRSRKTQV 435
Query: 644 MMEQVEELRRKERHLGEMNRQLKHKL 721
M++Q+EELR++ER L E+N+ L+ KL
Sbjct: 436 MLDQIEELRQRERLLHEVNKSLQKKL 513
Score = 70.7 bits (148), Expect(2) = 1e-021
Identities = 35/68 (51%), Positives = 38/68 (55%)
Frame = -3 / -1
Query: 417 YLSKVFVMPALPNS*SLPRLEKMMXXXXXXXXXXXXXAFLSRPLRRLEKVTWRLILFSIR 238
YLS V M L NS*S P +EK++ AF S P RR E VT R ILFSIR
Sbjct: 206 YLSNVLFMLELANS*SFPLVEKIISATSASHSTDSSYAFFSSPFRRFENVTCRFILFSIR 27
Query: 237 LSSTRPLP 214
LS TRP P
Sbjct: 26 LS*TRPRP 3
Score = 53.3 bits (110), Expect(2) = 1e-021
Identities = 31/82 (37%), Positives = 37/82 (45%)
Frame = -3 / -1
Query: 702 LFISPRCRSFLRSSSTCSIISCVFLCLACDKAHXXXXXXXXXXFTLXXXXXXXSKCL*VR 523
LF S RS RSSS S I+CVFL L C +A T +KCL R
Sbjct: 494 LFTSCSNRSLWRSSSIWSSITCVFLDLRCVRATSS*RSSCCSSLTFNGPRSSPNKCLCDR 315
Query: 522 CKASNFALSFDISWYQL*VSES 457
C++S +F SW Q S S
Sbjct: 314 CRSSTLPFNFVTSWCQFCASRS 249
Score = 32.7 bits (65), Expect(3) = 4e-075
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2 / +1
Query: 848 MDCEPTLQIGYPP 886
+DCEPTLQIGY P
Sbjct: 664 VDCEPTLQIGYQP 702
>gb|AW010398.1|AW010398 ST06D02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST06D02, mRNA sequence
Length = 647
Score = 161 bits (346), Expect(2) = 3e-066
Identities = 67/83 (80%), Positives = 75/83 (90%)
Frame = +2 / +3
Query: 206 VAMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 385
+AMGRGRV+L+RIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF
Sbjct: 18 LAMGRGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFA 197
Query: 386 SAGITKTLERYQHCCYNAQDSNG 454
S+ + KTLERY+ C Y QD+ G
Sbjct: 198 SSSMNKTLERYEKCSYAMQDTTG 266
Score = 112 bits (239), Expect(2) = 3e-066
Identities = 45/75 (60%), Positives = 62/75 (82%)
Frame = +2 / +3
Query: 464 ETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQL 643
E Q+W+QE++KL+ K E LQR+QRHLLGE+LGPL+VKELQ+LE+QLE AL+ + RKT +
Sbjct: 279 EAQNWHQEVTKLKGKVELLQRSQRHLLGEDLGPLNVKELQRLERQLEGALTHLKSRKTXV 458
Query: 644 MMEQVEELRRKERHL 688
M++ +EEL + ER L
Sbjct: 459 MLDXIEELXQXERXL 503
Score = 74.8 bits (157), Expect(2) = 2e-021
Identities = 37/70 (52%), Positives = 41/70 (58%)
Frame = -3 / -2
Query: 417 YLSKVFVMPALPNS*SLPRLEKMMXXXXXXXXXXXXXAFLSRPLRRLEKVTWRLILFSIR 238
YLS V M L NS*S P +EK++ AF S P RRLE VT R ILFSIR
Sbjct: 229 YLSNVLFMLELANS*SFPLVEKIISATSASHSTDSSYAFFSSPFRRLENVTCRFILFSIR 50
Query: 237 LSSTRPLPMA 208
LS TRP P+A
Sbjct: 49 LS*TRPRPIA 20
Score = 48.3 bits (99), Expect(2) = 2e-021
Identities = 27/75 (36%), Positives = 33/75 (44%)
Frame = -3 / -2
Query: 681 RSFLRSSSTCSIISCVFLCLACDKAHXXXXXXXXXXFTLXXXXXXXSKCL*VRCKASNFA 502
RS SSS S I+CVFL L C +A T +KCL RC++S
Sbjct: 496 RSXWXSSSXWSSITCVFLDLRCVRAPSS*RSSRCSSLTFNGPRSSPNKCLCDRCRSSTLP 317
Query: 501 LSFDISWYQL*VSES 457
+F SW Q S S
Sbjct: 316 FNFVTSWCQFCASRS 272
>gb|BQ290846.1|BQ290846 NXRV050_D03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV050_D03 5' similar to Arabidopsis thaliana
sequence At5g15800 transcription factor (AGL2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 546
Score = 161 bits (346), Expect(2) = 4e-065
Identities = 67/83 (80%), Positives = 75/83 (90%)
Frame = +2 / +1
Query: 206 VAMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 385
+AMGRGRV+L+RIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF
Sbjct: 79 LAMGRGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFA 258
Query: 386 SAGITKTLERYQHCCYNAQDSNG 454
S+ + KTLERY+ C Y QD+ G
Sbjct: 259 SSSMNKTLERYEKCSYAMQDTTG 327
Score = 108 bits (230), Expect(2) = 4e-065
Identities = 44/69 (63%), Positives = 56/69 (81%)
Frame = +2 / +1
Query: 464 ETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQL 643
E Q+W+QE++KL+ K E LQR+QRHLLGE+LGPL+VKELQQLE+QLE AL+ R RKT
Sbjct: 340 EAQNWHQEVTKLKGKVELLQRSQRHLLGEDLGPLNVKELQQLERQLEVALTHLRSRKTXX 519
Query: 644 MMEQVEELR 670
M++ EE R
Sbjct: 520 MLDXXEEXR 546
>gb|U42399.1|PRU42399 Pinus radiata putative MADS-box family transcription factor
(PrMADS1) mRNA, complete cds
Length = 1007
Score = 138 bits (295), Expect(2) = 3e-064
Identities = 58/113 (51%), Positives = 84/113 (74%)
Frame = +2 / +3
Query: 386 SAGITKTLERYQHCCYNAQDSNGALSETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPL 565
S+ + KT+E+YQ C Y + ++N +++E Q+ YQ+ +L+A+ E LQR+QR+LLGEELGPL
Sbjct: 198 SSSMMKTIEKYQKCSYGSLETNCSINEMQNSYQDYLELKARVEVLQRSQRNLLGEELGPL 377
Query: 566 SVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERHLGEMNRQLKHKLE 724
+ KEL+QLE QLE +L Q R KTQ M +Q+ L+ KE+ L E NR+L+ KLE
Sbjct: 378 NSKELEQLEHQLENSLKQIRSAKTQFMFDQLAHLQHKEQMLVEANRELRKKLE 536
Score = 128 bits (275), Expect(2) = 3e-064
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +2 / +3
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRG+VELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF S+
Sbjct: 21 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 200
>gb|CF399403.1|CF399403 RTDS3_28_D02.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_28_D02_A022 5', mRNA sequence
Length = 711
Score = 138 bits (295), Expect(2) = 8e-054
Identities = 56/79 (70%), Positives = 69/79 (87%)
Frame = +2 / +2
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRGRV+L++IENKINRQVTFSKRRNGL KKA ELS+LCDAEVALI+FS+RGKLY+F S+
Sbjct: 41 MGRGRVQLRKIENKINRQVTFSKRRNGLKKKASELSILCDAEVALIVFSNRGKLYDFASS 220
Query: 392 GITKTLERYQHCCYNAQDS 448
+ K LERY+ C + +D+
Sbjct: 221 SMAKILERYRTCSNSGRDT 277
Score = 94.1 bits (199), Expect(2) = 8e-054
Identities = 41/85 (48%), Positives = 59/85 (69%)
Frame = +2 / +2
Query: 467 TQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLM 646
TQ E ++L+ K + LQR RHLLGE+L L+++ELQQLE+QL+ L Q +K QLM
Sbjct: 287 TQDSNMEFTQLKEKVKTLQRCSRHLLGEDLDRLTIRELQQLEQQLDGGLHQVISKKNQLM 466
Query: 647 MEQVEELRRKERHLGEMNRQLKHKL 721
+ +E+L+RKE+ L E N+ L+ KL
Sbjct: 467 SDMIEDLQRKEQLLEETNKSLQKKL 541
>gb|AF006210.1|AF006210 Pinus resinosa MADS box transcription factor mRNA, complete cds
Length = 1726
Score = 138 bits (296), Expect(2) = 5e-052
Identities = 55/92 (59%), Positives = 69/92 (75%)
Frame = +2 / +1
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRG++E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYEF +
Sbjct: 475 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEFANH 654
Query: 392 GITKTLERYQHCCYNAQDSNGALSETQSWYQE 487
+ +T+ERY+ C + ++Q+
Sbjct: 655 SVKRTIERYKKTCVDNNHGGAISESNSQYWQQ 750
Score = 87.7 bits (185), Expect(2) = 5e-052
Identities = 35/87 (40%), Positives = 59/87 (67%)
Frame = +2 / +1
Query: 461 SETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQ 640
S +Q W QE KLR + E LQ RHL+G+ L L++KEL+QLE +LE +S+ R +K +
Sbjct: 727 SNSQYWQQEAGKLRQQIEILQNANRHLMGDGLTALNIKELKQLEVRLEKGISRVRSKKNE 906
Query: 641 LMMEQVEELRRKERHLGEMNRQLKHKL 721
+++E+++ ++R+E L + N L+ K+
Sbjct: 907 MLLEEIDIMQRREHILIQENEILRSKI 987
>gb|AF023615.1|AF023615 Pinus radiata MADS box protein mRNA, complete cds
Length = 922
Score = 138 bits (296), Expect(2) = 1e-051
Identities = 55/92 (59%), Positives = 69/92 (75%)
Frame = +2 / +2
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRG++E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYEF +
Sbjct: 14 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEFANH 193
Query: 392 GITKTLERYQHCCYNAQDSNGALSETQSWYQE 487
+ +T+ERY+ C + ++Q+
Sbjct: 194 SVKRTIERYKKTCVDNNHGGAISESNSQYWQQ 289
Score = 86.3 bits (182), Expect(2) = 1e-051
Identities = 34/87 (39%), Positives = 59/87 (67%)
Frame = +2 / +2
Query: 461 SETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQ 640
S +Q W QE KLR + + LQ RHL+G+ L L++KEL+QLE +LE +S+ R +K +
Sbjct: 266 SNSQYWQQEAGKLRQQIDILQNANRHLMGDGLTALNIKELKQLEVRLEKGISRVRSKKNE 445
Query: 641 LMMEQVEELRRKERHLGEMNRQLKHKL 721
+++E+++ ++R+E L + N L+ K+
Sbjct: 446 MLLEEIDIMQRREHILIQENEILRSKI 526
>gb|CF665739.1|CF665739 RTCNT1_18_D05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_18_D05_A029 3', mRNA sequence
Length = 665
Score = 134 bits (287), Expect(2) = 6e-051
Identities = 58/88 (65%), Positives = 71/88 (80%)
Frame = +2 / -1
Query: 158 R*SKLDRRKEGS*RSYVAMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAE 337
R S+ +R S + MGRGRV+L++IENKINRQVTFSKRRNGL KKA ELS+LCDAE
Sbjct: 545 RGSERERESTCSRKGLFEMGRGRVQLRKIENKINRQVTFSKRRNGLKKKAAELSILCDAE 366
Query: 338 VALIIFSSRGKLYEFGSAGITKTLERYQ 421
VALI+FS+RGKLYEF S+ + K L+RY+
Sbjct: 365 VALIVFSNRGKLYEFASSSMEKILQRYR 282
Score = 88.1 bits (186), Expect(2) = 6e-051
Identities = 39/81 (48%), Positives = 55/81 (67%)
Frame = +2 / -2
Query: 467 TQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLM 646
TQ E ++L+ KFE+LQR RHLLGE++ L++KELQQLE+QL+ L Q K Q M
Sbjct: 244 TQDSNMEFTQLKEKFESLQRCNRHLLGEDVDGLTMKELQQLEQQLQGGLHQVISXKNQFM 65
Query: 647 MEQVEELRRKERHLGEMNRQL 709
+ +EEL++KE+ L N+ L
Sbjct: 64 FDMIEELQKKEQLLEGENKSL 2
>gb|DR167232.1|DR167232 RTPHOS1_17_B11.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_17_B11_A029 5', mRNA sequence
Length = 798
Score = 133 bits (284), Expect(2) = 2e-048
Identities = 58/98 (59%), Positives = 74/98 (75%)
Frame = +2 / +1
Query: 128 PRCTQRRPCVR*SKLDRRKEGS*RSYVAMGRGRVELKRIENKINRQVTFSKRRNGLLKKA 307
PR + R S +R+ + + MGRGRV+L+RIENKI+RQVTFSKRRNGL+KKA
Sbjct: 73 PRTLGKGES*RPSGRERKSRWNSKGLFKMGRGRVQLRRIENKISRQVTFSKRRNGLMKKA 252
Query: 308 YELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQ 421
ELS+LCDAEV LI+FS++ KLYEF S+ +TK LERY+
Sbjct: 253 AELSILCDAEVGLIVFSNKDKLYEFASSSMTKILERYR 366
Score = 81.3 bits (171), Expect(2) = 2e-048
Identities = 36/75 (48%), Positives = 52/75 (69%)
Frame = +2 / +1
Query: 485 EMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEE 664
E++ L+ + + LQR++RHLLGE+L L +LQ LE+QLE AL + KTQ M+ +EE
Sbjct: 421 ELTHLKEEVDRLQRSRRHLLGEDLHQLGATDLQHLEQQLEEALQKVTLTKTQFMLHLIEE 600
Query: 665 LRRKERHLGEMNRQL 709
LRRKE+ L +N+ L
Sbjct: 601 LRRKEQLLEGINKSL 645
>gb|DR060889.1|DR060889 RTNIT1_30_D12.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_30_D12_A029 5', mRNA sequence
Length = 796
Score = 127 bits (272), Expect(2) = 2e-047
Identities = 53/83 (63%), Positives = 66/83 (79%)
Frame = +2 / +3
Query: 218 RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGI 397
RG+ ++KRIEN +RQVTFSKRRNGLLKKAYELSVLCDAEVAL++FS RGKLYEF + +
Sbjct: 54 RGKTQMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALMVFSPRGKLYEFANPSM 233
Query: 398 TKTLERYQHCCYNAQDSNGALSE 466
K LERY+ C ++ ++ A E
Sbjct: 234 QKMLERYEKCSEGSKTTSIAKEE 302
Score = 83.1 bits (175), Expect(2) = 2e-047
Identities = 33/80 (41%), Positives = 55/80 (68%)
Frame = +2 / +3
Query: 482 QEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVE 661
+E++ + + E L+RTQR +LGEEL ++K+L QLE Q+E L R RK+++++ Q+E
Sbjct: 321 REIANMEERIEILERTQRKMLGEELASCALKDLNQLESQVERGLRNIRARKSEILVTQIE 500
Query: 662 ELRRKERHLGEMNRQLKHKL 721
+L+RKER E N L+ ++
Sbjct: 501 QLQRKERMFSEENNFLRKRI 560
>gb|CO364965.1|CO364965 RTK1_22_G09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_G09_A029 5', mRNA sequence
Length = 833
Score = 127 bits (273), Expect(2) = 5e-047
Identities = 53/70 (75%), Positives = 61/70 (87%)
Frame = +2 / +3
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
M RG+ ++KRIEN +RQVTFSKRRNGLLKKAYELSVLCDAEV LI+FS RGKLYEFGS+
Sbjct: 177 MVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSS 356
Query: 392 GITKTLERYQ 421
+ K +ERYQ
Sbjct: 357 SMQKIVERYQ 386
Score = 81.3 bits (171), Expect(2) = 5e-047
Identities = 37/95 (38%), Positives = 55/95 (57%)
Frame = +2 / +3
Query: 434 NAQDSNGALSETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECAL 613
N+ + TQS +E++ + L+ TQR +LGE L SVKEL LE Q E L
Sbjct: 402 NSMNKTVREENTQSLKREIANMEETIRLLESTQRKMLGEGLASCSVKELNNLESQAERGL 581
Query: 614 SQARQRKTQLMMEQVEELRRKERHLGEMNRQLKHK 718
S R R+T+++ Q+++L++KER L E N L+ K
Sbjct: 582 SHIRSRRTEILKNQIDQLKKKERVLSEENAFLRKK 686
>gb|BQ654531.1|BQ654531 NXRV081_H04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV081_H04 5' similar to Arabidopsis thaliana
sequence At5g15800 transcription factor (AGL2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 436
Score = 161 bits (346), Expect(2) = 1e-046
Identities = 67/83 (80%), Positives = 75/83 (90%)
Frame = +2 / +2
Query: 206 VAMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 385
+AMGRGRV+L+RIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF
Sbjct: 56 LAMGRGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFA 235
Query: 386 SAGITKTLERYQHCCYNAQDSNG 454
S+ + KTLERY+ C Y QD+ G
Sbjct: 236 SSSMNKTLERYEKCSYAMQDTTG 304
Score = 46.4 bits (95), Expect(2) = 1e-046
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +2 / +3
Query: 482 QEMSKLRAKFEALQRTQRHLLGEELGPLSV 571
QE++KL+ K E LQR+Q HLLGE L PL+V
Sbjct: 336 QEVTKLKGKVELLQRSQTHLLGEXLXPLNV 425
>gb|DR090702.1|DR090702 RTAL1_16_G11.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_16_G11_A029 5', mRNA sequence
Length = 808
Score = 127 bits (273), Expect(2) = 2e-046
Identities = 53/70 (75%), Positives = 61/70 (87%)
Frame = +2 / +3
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
M RG+ ++KRIEN +RQVTFSKRRNGLLKKAYELSVLCDAEV LI+FS RGKLYEFGS+
Sbjct: 249 MVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSS 428
Query: 392 GITKTLERYQ 421
+ K +ERYQ
Sbjct: 429 SMQKIVERYQ 458
Score = 79.4 bits (167), Expect(2) = 2e-046
Identities = 36/93 (38%), Positives = 54/93 (58%)
Frame = +2 / +3
Query: 434 NAQDSNGALSETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECAL 613
N+ + TQS +E++ + L+ TQR +LGE L SVKEL LE Q E L
Sbjct: 474 NSMNKTVREENTQSLKREIANMEETIRLLESTQRKMLGEGLASCSVKELNNLESQAERGL 653
Query: 614 SQARQRKTQLMMEQVEELRRKERHLGEMNRQLK 712
S R R+T+++ Q+++L++KER L E N L+
Sbjct: 654 SHIRSRRTEILKNQIDQLKKKERVLSEENAFLR 752
>gb|CF392697.1|CF392697 RTDR3_5_H09.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_5_H09_A022 5', mRNA
sequence
Length = 727
Score = 140 bits (300), Expect(2) = 2e-046
Identities = 60/92 (65%), Positives = 74/92 (80%)
Frame = +2 / +2
Query: 146 RPCVR*SKLDRRKEGS*RSYVAMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVL 325
R R + +R +E S + MGRG V+L+RIENKINRQVTFSKRRNGL+KKA ELS+L
Sbjct: 215 RGLARFRERERERESSRKGRFKMGRGPVQLRRIENKINRQVTFSKRRNGLIKKASELSIL 394
Query: 326 CDAEVALIIFSSRGKLYEFGSAGITKTLERYQ 421
CDAEVALI+FS++GKLYEF S+ +TK LERY+
Sbjct: 395 CDAEVALIVFSNKGKLYEFSSSSMTKILERYR 490
Score = 67.0 bits (140), Expect(2) = 2e-046
Identities = 29/61 (47%), Positives = 42/61 (68%)
Frame = +2 / +2
Query: 485 EMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEE 664
E++ L+ + + LQR++RHLLGE+L L +LQ LE+QLE AL + KTQ M+ +EE
Sbjct: 545 ELTHLKEEVDRLQRSRRHLLGEDLHQLGATDLQHLEQQLEEALQKVTLTKTQFMLHLIEE 724
Query: 665 L 667
L
Sbjct: 725 L 727
>gb|DR079072.1|DR079072 RTFEPL1_8_G11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_8_G11_A029 5', mRNA sequence
Length = 829
Score = 127 bits (273), Expect(2) = 9e-046
Identities = 53/70 (75%), Positives = 61/70 (87%)
Frame = +2 / +2
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
M RG+ ++KRIEN +RQVTFSKRRNGLLKKAYELSVLCDAEV LI+FS RGKLYEFGS+
Sbjct: 146 MVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSS 325
Query: 392 GITKTLERYQ 421
+ K +ERYQ
Sbjct: 326 SMQKIVERYQ 355
Score = 77.1 bits (162), Expect(2) = 9e-046
Identities = 36/95 (37%), Positives = 54/95 (56%)
Frame = +2 / +2
Query: 434 NAQDSNGALSETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECAL 613
N+ + TQS++ ++ + L+ TQR +LGE L SVKEL LE Q E L
Sbjct: 371 NSMNKTVREENTQSFFFLIANMEETILFLESTQRKMLGEGLASCSVKELNNLESQAERGL 550
Query: 614 SQARQRKTQLMMEQVEELRRKERHLGEMNRQLKHK 718
S R R+T++ Q+++L++KER L E N L+ K
Sbjct: 551 SHIRSRRTEIFKNQIDQLKKKERMLSEENAFLRKK 655
>gb|CX650850.1|CX650850 COLD1_48_B09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_48_B09_A029 5', mRNA sequence
Length = 814
Score = 120 bits (256), Expect(2) = 3e-045
Identities = 50/85 (58%), Positives = 64/85 (75%)
Frame = +2 / +1
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRGR L++IE+ +RQVTFSKRRNGLLKKAYELSVLCD E+ LI+ S RGK++EF S
Sbjct: 82 MGRGRTRLRKIESATSRQVTFSKRRNGLLKKAYELSVLCDVELGLIVLSPRGKVHEFSST 261
Query: 392 GITKTLERYQHCCYNAQDSNGALSE 466
+ K LERY+ C ++ ++ A E
Sbjct: 262 CVQKMLERYEKCSEGSKTTSIAKEE 336
Score = 83.1 bits (175), Expect(2) = 3e-045
Identities = 33/80 (41%), Positives = 55/80 (68%)
Frame = +2 / +1
Query: 482 QEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVE 661
+E++ + + E L+RTQR +LGEEL ++K+L QLE Q+E L R RK+++++ Q+E
Sbjct: 355 REIANMEERIEILERTQRKMLGEELASCALKDLNQLESQVERGLRNIRARKSEILVTQIE 534
Query: 662 ELRRKERHLGEMNRQLKHKL 721
+L+RKER E N L+ ++
Sbjct: 535 QLQRKERMFSEENNFLRKRI 594
>gb|U90345.1|PRU90345 Pinus radiata putative MADS box transcription factor PrMADS4 mRNA,
complete cds
Length = 1051
Score = 119 bits (254), Expect(2) = 6e-045
Identities = 49/85 (57%), Positives = 65/85 (76%)
Frame = +2 / +3
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRGR+ L++IE+ +RQVTFSKR+NGLLKKAYELSVLCD E+ LI+ S RGK++EF S
Sbjct: 180 MGRGRIRLRKIESATSRQVTFSKRKNGLLKKAYELSVLCDVELGLIVLSPRGKVHEFSST 359
Query: 392 GITKTLERYQHCCYNAQDSNGALSE 466
+ K LERY+ C ++ ++ A E
Sbjct: 360 CMQKMLERYEKCSEGSKTTSIAKEE 434
Score = 83.1 bits (175), Expect(2) = 6e-045
Identities = 33/80 (41%), Positives = 55/80 (68%)
Frame = +2 / +3
Query: 482 QEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVE 661
+E++ + + E L+RTQR +LGEEL ++K+L QLE Q+E L R RK+++++ Q+E
Sbjct: 453 REIANMEERIEILERTQRKMLGEELASCALKDLNQLESQVERGLRNIRARKSEILVTQIE 632
Query: 662 ELRRKERHLGEMNRQLKHKL 721
+L+RKER E N L+ ++
Sbjct: 633 QLQRKERMFSEENNFLRKRI 692
>gb|DR058453.1|DR058453 RTNIT1_11_H04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_11_H04_A029 5', mRNA sequence
Length = 843
Score = 120 bits (256), Expect(2) = 6e-045
Identities = 47/71 (66%), Positives = 63/71 (88%)
Frame = +2 / -2
Query: 464 ETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQL 643
E Q+W+QE++KL+ K E LQR+QRHLLGE+LGPL+VKELQQLE+QLE AL+ R RKTQ+
Sbjct: 692 EAQNWHQEVTKLKGKVELLQRSQRHLLGEDLGPLNVKELQQLERQLEVALTHLRSRKTQV 513
Query: 644 MMEQVEELRRK 676
M++Q+EELR++
Sbjct: 512 MLDQIEELRQR 480
Score = 82.2 bits (173), Expect(2) = 6e-045
Identities = 33/46 (71%), Positives = 38/46 (82%)
Frame = +2 / -2
Query: 317 SVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNG 454
SVLCDAEVALIIFS+RGKLYEF S+ + KTLERY+ C Y QD+ G
Sbjct: 842 SVLCDAEVALIIFSTRGKLYEFASSSMNKTLERYEKCSYAMQDTTG 705
>gb|DR012819.1|DR012819 HEAT1_15_E08.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_15_E08_A029 3', mRNA sequence
Length = 734
Score = 119 bits (254), Expect(2) = 6e-045
Identities = 50/85 (58%), Positives = 64/85 (75%)
Frame = +2 / -1
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRGR L++IE+ +RQVTFSKRRNGLLKKAYELSVLCD E+ LI+ S RGK++EF S
Sbjct: 695 MGRGRTRLRKIESATSRQVTFSKRRNGLLKKAYELSVLCDVELGLIVLSPRGKVHEFSST 516
Query: 392 GITKTLERYQHCCYNAQDSNGALSE 466
+ K LERY+ C ++ ++ A E
Sbjct: 515 CMQKMLERYEKCSEGSKTTSIAKEE 441
Score = 83.1 bits (175), Expect(2) = 6e-045
Identities = 33/80 (41%), Positives = 55/80 (68%)
Frame = +2 / -1
Query: 482 QEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVE 661
+E++ + + E L+RTQR +LGEEL ++K+L QLE Q+E L R RK+++++ Q+E
Sbjct: 422 REIANMEERIEILERTQRKMLGEELASCALKDLNQLESQVERGLRNIRARKSEILVTQIE 243
Query: 662 ELRRKERHLGEMNRQLKHKL 721
+L+RKER E N L+ ++
Sbjct: 242 QLQRKERMFSEENNFLRKRI 183
>gb|CO170901.1|CO170901 NDL1_17_E10.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_17_E10_A029 5', mRNA sequence
Length = 699
Score = 119 bits (254), Expect(2) = 6e-045
Identities = 50/85 (58%), Positives = 64/85 (75%)
Frame = +2 / +3
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRGR L++IE+ +RQVTFSKRRNGLLKKAYELSVLCD E+ LI+ S RGK++EF S
Sbjct: 147 MGRGRTRLRKIESATSRQVTFSKRRNGLLKKAYELSVLCDVELGLIVLSPRGKVHEFSST 326
Query: 392 GITKTLERYQHCCYNAQDSNGALSE 466
+ K LERY+ C ++ ++ A E
Sbjct: 327 CMQKMLERYEKCSEGSKTTSIAKEE 401
Score = 83.1 bits (175), Expect(2) = 6e-045
Identities = 33/80 (41%), Positives = 55/80 (68%)
Frame = +2 / +3
Query: 482 QEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVE 661
+E++ + + E L+RTQR +LGEEL ++K+L QLE Q+E L R RK+++++ Q+E
Sbjct: 420 REIANMEERIEILERTQRKMLGEELASCALKDLNQLESQVERGLRNIRARKSEILVTQIE 599
Query: 662 ELRRKERHLGEMNRQLKHKL 721
+L+RKER E N L+ ++
Sbjct: 600 QLQRKERMFSEENNFLRKRI 659
>gb|DR069454.1|DR069454 RTDK1_7_H04.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_7_H04_A029 3', mRNA sequence
Length = 871
Score = 116 bits (249), Expect(2) = 3e-044
Identities = 49/85 (57%), Positives = 63/85 (74%)
Frame = +2 / +2
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRGR L++IE+ +RQVTFSKRRNGLLKKAYE SVLCD E+ LI+ S RGK++EF S
Sbjct: 5 MGRGRTRLRKIESATSRQVTFSKRRNGLLKKAYEXSVLCDVELGLIVLSPRGKVHEFSST 184
Query: 392 GITKTLERYQHCCYNAQDSNGALSE 466
+ K LERY+ C ++ ++ A E
Sbjct: 185 CMQKMLERYEKCSEGSKTTSIAKEE 259
Score = 83.1 bits (175), Expect(2) = 3e-044
Identities = 33/80 (41%), Positives = 55/80 (68%)
Frame = +2 / +2
Query: 482 QEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVE 661
+E++ + + E L+RTQR +LGEEL ++K+L QLE Q+E L R RK+++++ Q+E
Sbjct: 278 REIANMEERIEILERTQRKMLGEELASCALKDLNQLESQVERGLRNIRARKSEILVTQIE 457
Query: 662 ELRRKERHLGEMNRQLKHKL 721
+L+RKER E N L+ ++
Sbjct: 458 QLQRKERMFSEENNFLRKRI 517
>gb|CX650456.1|CX650456 COLD1_45_F12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_45_F12_A029 5', mRNA sequence
Length = 852
Score = 133 bits (286), Expect(2) = 4e-044
Identities = 56/91 (61%), Positives = 71/91 (78%)
Frame = +2 / +1
Query: 173 DRRKEGS*RSYVAMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALII 352
+R S + MGRGRV+L+ IENKINRQVTFSKRR GL+KKA ELS+LCDAEVA+I+
Sbjct: 250 ERESASSVKCPFKMGRGRVQLRMIENKINRQVTFSKRRTGLMKKASELSILCDAEVAVIV 429
Query: 353 FSSRGKLYEFGSAGITKTLERYQHCCYNAQD 445
FS+RGKLY+F S+ +TK LER++ C +D
Sbjct: 430 FSNRGKLYQFSSSSMTKILERHRKCSTLVED 522
Score = 65.7 bits (137), Expect(2) = 4e-044
Identities = 28/52 (53%), Positives = 40/52 (76%)
Frame = +2 / +1
Query: 485 EMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQ 640
E+++L+ K + LQR +RH++GE+L LSVKELQQLE+QLE L Q + +K Q
Sbjct: 553 ELTELKRKTDNLQRWRRHVMGEDLDQLSVKELQQLEQQLEEGLKQVKLKKEQ 708
>gb|CF401468.1|CF401468 RTWW1_12_E09.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_12_E09_A015 5', mRNA sequence
Length = 811
Score = 133 bits (286), Expect(2) = 4e-044
Identities = 55/78 (70%), Positives = 67/78 (85%)
Frame = +2 / +3
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRGRV+L+ IENKINRQVTFSKRR+GL+KKA ELS+LCDAEVA+I+FSS GKLYEF S+
Sbjct: 33 MGRGRVQLRMIENKINRQVTFSKRRSGLMKKASELSILCDAEVAMIVFSSTGKLYEFSSS 212
Query: 392 GITKTLERYQHCCYNAQD 445
+TK LER++ C +D
Sbjct: 213 SMTKILERHRKCSTLVED 266
Score = 65.7 bits (137), Expect(2) = 4e-044
Identities = 28/52 (53%), Positives = 40/52 (76%)
Frame = +2 / +3
Query: 485 EMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQ 640
E+++L+ K + LQR +RH++GE+L LSVKELQQLE+QLE L Q + +K Q
Sbjct: 297 ELTELKRKTDNLQRWRRHVMGEDLDQLSVKELQQLEQQLEEGLKQVKLKKEQ 452
>gb|CO163263.1|CO163263 FLD1_40_B04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_B04_A029 5', mRNA sequence
Length = 841
Score = 127 bits (273), Expect(2) = 1e-043
Identities = 53/70 (75%), Positives = 61/70 (87%)
Frame = +2 / +2
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
M RG+ ++KRIEN +RQVTFSKRRNGLLKKAYELSVLCDAEV LI+FS RGKLYEFGS+
Sbjct: 44 MVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSS 223
Query: 392 GITKTLERYQ 421
+ K +ERYQ
Sbjct: 224 SMQKIVERYQ 253
Score = 70.3 bits (147), Expect(2) = 1e-043
Identities = 30/82 (36%), Positives = 48/82 (58%)
Frame = +2 / +2
Query: 434 NAQDSNGALSETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECAL 613
N+ + TQS +E++ + L+ TQR +LGE L SVKEL LE Q E L
Sbjct: 269 NSMNKTVREENTQSLKREIANMEETIRLLESTQRKMLGEGLASCSVKELNNLESQAERGL 448
Query: 614 SQARQRKTQLMMEQVEELRRKE 679
S R R+T+++ Q+++L++K+
Sbjct: 449 SHIRSRRTEILKNQIDQLKKKD 514
>gb|U90344.1|PRU90344 Pinus radiata putative MADS box transcription factor PrMADS9 mRNA,
complete cds
Length = 1038
Score = 121 bits (259), Expect(2) = 2e-043
Identities = 53/78 (67%), Positives = 61/78 (78%)
Frame = +2 / +2
Query: 188 GS*RSYVAMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRG 367
G R M RG+ ++KRIEN +RQVTFSKRRNGLLKKAYELSVLCDAEV LIIFS RG
Sbjct: 95 GQKRERRRMVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRG 274
Query: 368 KLYEFGSAGITKTLERYQ 421
KLYEF S + + LE+Y+
Sbjct: 275 KLYEFASPSMEEILEKYK 328
Score = 75.8 bits (159), Expect(2) = 2e-043
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = +2 / +2
Query: 482 QEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVE 661
Q+++ + + L+ TQR +LGE L S+ EL +LE Q E LS R RKT+++++Q+E
Sbjct: 401 QKLANMEEQIRILESTQRKMLGEGLESCSMAELNKLESQAERGLSHIRARKTEILVDQIE 580
Query: 662 ELRRKERHLGEMNRQLKHK 718
L+RKER L E N L K
Sbjct: 581 CLKRKERLLSEENALLSRK 637
>gb|DR384822.1|DR384822 RTHG1_4_G03.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_G03_A029 5', mRNA sequence
Length = 668
Score = 121 bits (258), Expect(2) = 3e-043
Identities = 51/70 (72%), Positives = 59/70 (84%)
Frame = +2 / +2
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
M RG+ ++KRIEN +RQVTFSKRRNGLLKKAYELSVLCDAEV LIIFS RGKLYEF S
Sbjct: 119 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLYEFASP 298
Query: 392 GITKTLERYQ 421
+ + LE+Y+
Sbjct: 299 SMEEILEKYK 328
Score = 75.8 bits (159), Expect(2) = 3e-043
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = +2 / +2
Query: 482 QEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVE 661
Q+++ + + L+ TQR +LGE L S+ EL +LE Q E LS R RKT+++++Q+E
Sbjct: 401 QKLANMEEQIRILESTQRKMLGEGLESCSMTELNKLESQAERGLSHIRARKTEILVDQIE 580
Query: 662 ELRRKERHLGEMNRQLKHK 718
L+RKER L E N L K
Sbjct: 581 CLKRKERLLSEENALLSRK 637
>gb|CF475501.1|CF475501 RTWW2_12_G12.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_12_G12_A021 5', mRNA sequence
Length = 779
Score = 121 bits (258), Expect(2) = 7e-043
Identities = 51/70 (72%), Positives = 59/70 (84%)
Frame = +2 / +2
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
M RG+ ++KRIEN +RQVTFSKRRNGLLKKAYELSVLCDAEV LIIFS RGKLYEF S
Sbjct: 68 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLYEFASP 247
Query: 392 GITKTLERYQ 421
+ + LE+Y+
Sbjct: 248 SMEEILEKYK 277
Score = 74.4 bits (156), Expect(2) = 7e-043
Identities = 33/79 (41%), Positives = 50/79 (63%)
Frame = +2 / +2
Query: 482 QEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVE 661
++++ + + L+ TQR +LGE L S+ EL +LE Q E LS R RKT+++++Q+E
Sbjct: 350 EKLANMEEQIRILESTQRKMLGEGLESCSMTELNKLESQAERGLSHIRARKTEILVDQIE 529
Query: 662 ELRRKERHLGEMNRQLKHK 718
L+RKER L E N L K
Sbjct: 530 CLKRKERLLSEENALLSRK 586
>gb|CO363306.1|CO363306 RTK1_8_H10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_8_H10_A029 5', mRNA sequence
Length = 771
Score = 111 bits (238), Expect(2) = 9e-043
Identities = 47/74 (63%), Positives = 58/74 (78%)
Frame = +2 / +3
Query: 245 ENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQH 424
EN +RQVTFSKRRNGLLKKAYELSVLCDAEVAL++FS RGKLY+F + + K LERY+
Sbjct: 6 ENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALMVFSPRGKLYDFANPSMQKMLERYEK 185
Query: 425 CCYNAQDSNGALSE 466
C ++ ++ A E
Sbjct: 186 CSEGSKTTSIAKEE 227
Score = 83.1 bits (175), Expect(2) = 9e-043
Identities = 33/80 (41%), Positives = 55/80 (68%)
Frame = +2 / +3
Query: 482 QEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVE 661
+E++ + + E L+RTQR +LGEEL ++K+L QLE Q+E L R RK+++++ Q+E
Sbjct: 246 REIANMEERIEILERTQRKMLGEELASCALKDLNQLESQVERGLRNIRARKSEILVTQIE 425
Query: 662 ELRRKERHLGEMNRQLKHKL 721
+L+RKER E N L+ ++
Sbjct: 426 QLQRKERMFSEENNFLRKRI 485
>gb|CF477439.1|CF477439 RTWW3_7_F06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_7_F06_A022 5', mRNA sequence
Length = 758
Score = 140 bits (300), Expect(2) = 3e-042
Identities = 60/92 (65%), Positives = 74/92 (80%)
Frame = +2 / +2
Query: 146 RPCVR*SKLDRRKEGS*RSYVAMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVL 325
R R + +R +E S + MGRG V+L+RIENKINRQVTFSKRRNGL+KKA ELS+L
Sbjct: 80 RGLARFRERERERESSRKGRFKMGRGPVQLRRIENKINRQVTFSKRRNGLIKKASELSIL 259
Query: 326 CDAEVALIIFSSRGKLYEFGSAGITKTLERYQ 421
CDAEVALI+FS++GKLYEF S+ +TK LERY+
Sbjct: 260 CDAEVALIVFSNKGKLYEFSSSSMTKILERYR 355
Score = 52.8 bits (109), Expect(2) = 3e-042
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +2 / +2
Query: 485 EMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQL 643
E++ L+ + + LQR++RHLLGE+L L +LQ LE+QLE AL + K +
Sbjct: 410 ELTHLKEEVDRLQRSRRHLLGEDLHQLGATDLQHLEQQLEEALQKVTLTKVSV 568
>gb|CO169756.1|CO169756 NDL1_9_A05.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_9_A05_A029 5', mRNA sequence
Length = 753
Score = 118 bits (253), Expect(2) = 6e-042
Identities = 48/70 (68%), Positives = 60/70 (85%)
Frame = +2 / +3
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
M RG+ +++RIEN +RQVTFSKRRNGLLKKAYELSVLCDAEVALI+FS RGK++EF S
Sbjct: 273 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSPRGKVHEFASP 452
Query: 392 GITKTLERYQ 421
+ + L++YQ
Sbjct: 453 SMQRVLDKYQ 482
Score = 73.5 bits (154), Expect(2) = 6e-042
Identities = 32/74 (43%), Positives = 49/74 (66%)
Frame = +2 / +3
Query: 467 TQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLM 646
TQ E++++ + L+ QR +LGE+L S+KEL QLE Q E L++ R RKT+++
Sbjct: 531 TQHLKGEIAQMEERVNILESAQRKMLGEDLASCSMKELNQLESQAERGLNRIRARKTEIL 710
Query: 647 MEQVEELRRKERHL 688
M+Q E+L+ KER L
Sbjct: 711 MDQREQLKSKERML 752
>gb|CF476348.1|CF476348 RTWW2_22_G12.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_22_G12_A021 5', mRNA sequence
Length = 757
Score = 109 bits (232), Expect(2) = 8e-042
Identities = 45/70 (64%), Positives = 56/70 (80%)
Frame = +2 / +2
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRG+V ++RIEN +RQVTFSKRRNGLLKKA EL VLCDAEV +IIFS+ GK YE ++
Sbjct: 257 MGRGKVVVRRIENSTSRQVTFSKRRNGLLKKARELGVLCDAEVGVIIFSNTGKRYELATS 436
Query: 392 GITKTLERYQ 421
+ +ERY+
Sbjct: 437 SMKSIIERYE 466
Score = 82.6 bits (174), Expect(2) = 8e-042
Identities = 35/75 (46%), Positives = 52/75 (69%)
Frame = +2 / +2
Query: 476 WYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQ 655
W +E+ +++ +F+ LQ RHLLGEEL LSVK+L LE+ LE L + R RK +++ ++
Sbjct: 527 WRKEVMQMKEEFKRLQDQNRHLLGEELSALSVKDLHHLEQVLELTLQRVRDRKDKILNDE 706
Query: 656 VEELRRKERHLGEMN 700
+EEL +KER L E N
Sbjct: 707 LEELSQKERCLYEEN 751
>gb|BX252374.1|BX252374 BX252374 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP063E09 similar to AGAMOUS LIKE MADS BOX
PROTEIN, mRNA sequence
Length = 674
Score = 122 bits (261), Expect(2) = 8e-042
Identities = 52/70 (74%), Positives = 59/70 (84%)
Frame = +2 / +3
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
M RG+ ++K+IEN +RQVTFSKRRNGLLKKAYELSVLCDAEV LI+FS RGKLYEF S
Sbjct: 138 MVRGKTQMKKIENVTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFSSR 317
Query: 392 GITKTLERYQ 421
+ K LERYQ
Sbjct: 318 CMQKMLERYQ 347
Score = 69.3 bits (145), Expect(2) = 8e-042
Identities = 31/85 (36%), Positives = 53/85 (62%)
Frame = +2 / +3
Query: 464 ETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQL 643
+ Q +E++ + K L+ TQR +LGE+L S+KEL QLE Q + L R R T++
Sbjct: 393 DIQDIKRELADKKEKISILELTQRKMLGEDLESCSMKELNQLESQADRGLKHIRARLTKM 572
Query: 644 MMEQVEELRRKERHLGEMNRQLKHK 718
+++++++L+ KER + E N L+ K
Sbjct: 573 LVDEIDQLKWKERIVTEENLFLRKK 647
>gb|U90346.1|PRU90346 Pinus radiata putative MADS box transcription factor PrMADS5 mRNA,
complete cds
Length = 1301
Score = 120 bits (257), Expect(2) = 2e-041
Identities = 50/72 (69%), Positives = 58/72 (80%)
Frame = +2 / +1
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
M RG+ ++KRIEN +RQVT SKRRNGLLKKAYELSVLCDAEV LI+FS GKLYEF S
Sbjct: 169 MVRGKTQMKRIENATSRQVTLSKRRNGLLKKAYELSVLCDAEVGLIVFSPSGKLYEFAST 348
Query: 392 GITKTLERYQHC 427
+ K LE+Y+ C
Sbjct: 349 SMQKLLEKYEIC 384
Score = 70.3 bits (147), Expect(2) = 2e-041
Identities = 32/85 (37%), Positives = 50/85 (58%)
Frame = +2 / +1
Query: 464 ETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQL 643
+ Q QE+ + + LQ TQR +LGE L S+KEL QLE Q+E L+ R KT++
Sbjct: 424 DPQCLKQEIENMEKRVRILQSTQRKMLGEGLALCSIKELNQLEGQVERGLNHVRATKTKV 603
Query: 644 MMEQVEELRRKERHLGEMNRQLKHK 718
+++++E+L++KE E L K
Sbjct: 604 LLDEIEKLKQKEHVFREEKALLHKK 678
>gb|CO364847.1|CO364847 RTK1_22_D10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_D10_A029 3', mRNA sequence
Length = 867
Score = 116 bits (247), Expect(2) = 2e-041
Identities = 45/60 (75%), Positives = 56/60 (93%)
Frame = +2 / -2
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRG++E+K+IEN ++RQVTF KRR GL+KKAYELSVLCDA+VALI+FSSRGKLYE G++
Sbjct: 647 MGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTS 468
Score = 74.8 bits (157), Expect(2) = 2e-041
Identities = 32/81 (39%), Positives = 54/81 (66%)
Frame = +2 / -2
Query: 482 QEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVE 661
QE++ L+ + + L+ T R+L+GE LG +S +EL QLE +L+ ++Q R +K +LM++++
Sbjct: 356 QEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELNQLESRLQRGINQVRAKKHELMLDEIR 177
Query: 662 ELRRKERHLGEMNRQLKHKLE 724
L+ KE L N L+ KLE
Sbjct: 176 ALQSKEHTLRINNMMLQEKLE 114
>gb|CV031753.1|CV031753 RTNACL1_3_B05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_3_B05_A029 5', mRNA sequence
Length = 851
Score = 116 bits (247), Expect(2) = 2e-041
Identities = 45/60 (75%), Positives = 56/60 (93%)
Frame = +2 / +2
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRG++E+K+IEN ++RQVTF KRR GL+KKAYELSVLCDA+VALI+FSSRGKLYE G++
Sbjct: 179 MGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTS 358
Score = 74.8 bits (157), Expect(2) = 2e-041
Identities = 32/81 (39%), Positives = 54/81 (66%)
Frame = +2 / +2
Query: 482 QEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVE 661
QE++ L+ + + L+ T R+L+GE LG +S +EL QLE +L+ ++Q R +K +LM++++
Sbjct: 470 QEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELNQLESRLQRGINQVRAKKHELMLDEIR 649
Query: 662 ELRRKERHLGEMNRQLKHKLE 724
L+ KE L N L+ KLE
Sbjct: 650 ALQSKEHTLRINNMMLQEKLE 712
>gb|DR058437.1|DR058437 RTNIT1_11_F11.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_11_F11_A029 5', mRNA sequence
Length = 795
Score = 116 bits (247), Expect(2) = 2e-041
Identities = 45/60 (75%), Positives = 56/60 (93%)
Frame = +2 / +3
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRG++E+K+IEN ++RQVTF KRR GL+KKAYELSVLCDA+VALI+FSSRGKLYE G++
Sbjct: 201 MGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTS 380
Score = 74.8 bits (157), Expect(2) = 2e-041
Identities = 32/81 (39%), Positives = 54/81 (66%)
Frame = +2 / +3
Query: 482 QEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVE 661
QE++ L+ + + L+ T R+L+GE LG +S +EL QLE +L+ ++Q R +K +LM++++
Sbjct: 489 QEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELNQLESRLQRGINQVRAKKHELMLDEIR 668
Query: 662 ELRRKERHLGEMNRQLKHKLE 724
L+ KE L N L+ KLE
Sbjct: 669 ALQSKEHTLRINNMMLQEKLE 731
>gb|DR090622.1|DR090622 RTAL1_16_G11.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_16_G11_A029 3', mRNA sequence
Length = 859
Score = 108 bits (231), Expect(2) = 3e-041
Identities = 45/55 (81%), Positives = 50/55 (90%)
Frame = +2 / +2
Query: 257 NRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQ 421
+RQVTFSKRRNGLLKKAYELSVLCDAEV LI+FS RGKLYEFGS+ + K +ERYQ
Sbjct: 2 SRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSSSMQKIVERYQ 166
Score = 81.3 bits (171), Expect(2) = 3e-041
Identities = 37/95 (38%), Positives = 55/95 (57%)
Frame = +2 / +2
Query: 434 NAQDSNGALSETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECAL 613
N+ + TQS +E++ + L+ TQR +LGE L SVKEL LE Q E L
Sbjct: 182 NSMNKTVREENTQSLKREIANMEETIRLLESTQRKMLGEGLASCSVKELNNLESQAERGL 361
Query: 614 SQARQRKTQLMMEQVEELRRKERHLGEMNRQLKHK 718
S R R+T+++ Q+++L++KER L E N L+ K
Sbjct: 362 SHIRSRRTEILKNQIDQLKKKERVLSEENAFLRKK 466
>gb|CO175129.1|CO175129 NDL1_48_D06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_48_D06_A029 5', mRNA sequence
Length = 804
Score = 108 bits (231), Expect(2) = 3e-041
Identities = 45/55 (81%), Positives = 50/55 (90%)
Frame = +2 / +2
Query: 257 NRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQ 421
+RQVTFSKRRNGLLKKAYELSVLCDAEV LI+FS RGKLYEFGS+ + K +ERYQ
Sbjct: 5 SRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSSSMQKIVERYQ 169
Score = 81.3 bits (171), Expect(2) = 3e-041
Identities = 37/95 (38%), Positives = 55/95 (57%)
Frame = +2 / +2
Query: 434 NAQDSNGALSETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECAL 613
N+ + TQS +E++ + L+ TQR +LGE L SVKEL LE Q E L
Sbjct: 185 NSMNKTVREENTQSLKREIANMEETIRLLESTQRKMLGEGLASCSVKELNNLESQAERGL 364
Query: 614 SQARQRKTQLMMEQVEELRRKERHLGEMNRQLKHK 718
S R R+T+++ Q+++L++KER L E N L+ K
Sbjct: 365 SHIRSRRTEILKNQIDQLKKKERVLSEENAFLRKK 469
>gb|DR109660.1|DR109660 RTS1_3_G12.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_G12_A029 5', mRNA sequence
Length = 826
Score = 114 bits (244), Expect(2) = 4e-041
Identities = 46/64 (71%), Positives = 57/64 (89%)
Frame = +2 / +3
Query: 194 *RSYVAMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKL 373
* + + MGRG++E+K+IEN ++RQVTF KRR GL+KKA+ELSVLCDAEVALI+FSSRGKL
Sbjct: 168 *ETLLKMGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAHELSVLCDAEVALIVFSSRGKL 347
Query: 374 YEFG 385
YE G
Sbjct: 348 YELG 359
Score = 74.8 bits (157), Expect(2) = 4e-041
Identities = 32/81 (39%), Positives = 54/81 (66%)
Frame = +2 / +3
Query: 482 QEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVE 661
QE++ L+ + + L+ T R+L+GE LG +S +EL QLE +L+ ++Q R +K +LM++++
Sbjct: 477 QEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELNQLESRLQRGINQVRAKKHELMLDEIR 656
Query: 662 ELRRKERHLGEMNRQLKHKLE 724
L+ KE L N L+ KLE
Sbjct: 657 ALQSKEHTLRINNMMLQEKLE 719
>gb|CO201105.1|CO201105 RTCNT2_3_D12.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_3_D12_A029 5', mRNA sequence
Length = 758
Score = 116 bits (247), Expect(2) = 6e-041
Identities = 45/60 (75%), Positives = 56/60 (93%)
Frame = +2 / +1
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRG++E+K+IEN ++RQVTF KRR GL+KKAYELSVLCDA+VALI+FSSRGKLYE G++
Sbjct: 193 MGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTS 372
Score = 73.0 bits (153), Expect(2) = 6e-041
Identities = 31/81 (38%), Positives = 54/81 (66%)
Frame = +2 / +1
Query: 482 QEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVE 661
QE++ L+ + + L+ T R+L+GE LG +S +EL QLE +L+ ++Q R +K +LM++++
Sbjct: 484 QEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELTQLESRLQRGINQVRAKKHELMLDEIR 663
Query: 662 ELRRKERHLGEMNRQLKHKLE 724
L+ KE L N L+ +LE
Sbjct: 664 ALQSKEHTLRINNMMLQERLE 726
>gb|U90349.1|PRU90349 Pinus radiata putative MADS box transcription factor PrMADS8 mRNA,
complete cds
Length = 711
Score = 167 bits (360), Expect = 1e-040
Identities = 71/155 (45%), Positives = 102/155 (65%)
Frame = +2 / +2
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
M RG+ ++++IE+ +RQVTFSKRRNGL+KKAYELSVLCDA++ LI+FS RGK+YEF S
Sbjct: 5 MARGKTQMRKIESATSRQVTFSKRRNGLMKKAYELSVLCDAQLGLIVFSPRGKVYEFSST 184
Query: 392 GITKTLERYQHCCYNAQDSNGALSETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSV 571
+ K L RY+ C + S + Q +E + + + E L+ QR +LGEEL ++
Sbjct: 185 CMQKMLARYEKCSEGSDTSTSKEQDVQCLKRESANMEERIEILESMQRKMLGEELASCAL 364
Query: 572 KELQQLEKQLECALSQARQRKTQLMMEQVEELRRK 676
K+L QLE Q+E L R RK +++ E+ L +K
Sbjct: 365 KDLNQLESQVERXLRNVRARKERILSEENAFLSKK 469
>gb|CX645252.1|CX645252 COLD1_1_H11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_1_H11_A029 3', mRNA sequence
Length = 793
Score = 114 bits (244), Expect(2) = 1e-040
Identities = 46/64 (71%), Positives = 57/64 (89%)
Frame = +2 / -3
Query: 194 *RSYVAMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKL 373
* + + MGRG++E+K+IEN ++RQVTF KRR GL+KKA+ELSVLCDAEVALI+FSSRGKL
Sbjct: 632 *ETLLKMGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAHELSVLCDAEVALIVFSSRGKL 453
Query: 374 YEFG 385
YE G
Sbjct: 452 YELG 441
Score = 73.0 bits (153), Expect(2) = 1e-040
Identities = 31/81 (38%), Positives = 54/81 (66%)
Frame = +2 / -3
Query: 482 QEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVE 661
QE++ L+ + + L+ T R+L+GE LG +S +EL QLE +L+ ++Q R +K +LM++++
Sbjct: 326 QEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELTQLESRLQRGINQVRAKKHELMLDEIR 147
Query: 662 ELRRKERHLGEMNRQLKHKLE 724
L+ KE L N L+ +LE
Sbjct: 146 ALQSKEHTLRINNMMLQERLE 84
>gb|DR177222.1|DR177222 RTMNUT1_3_H10.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_3_H10_A029 5', mRNA sequence
Length = 770
Score = 117 bits (251), Expect(2) = 2e-040
Identities = 49/70 (70%), Positives = 57/70 (81%)
Frame = +2 / +3
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
M RG+ ++KRIEN +RQVT SKRRNGLLKKAYELSVLCDAEV LI+FS GKLYEF S
Sbjct: 180 MVRGKTQMKRIENPTSRQVTLSKRRNGLLKKAYELSVLCDAEVGLIVFSPSGKLYEFAST 359
Query: 392 GITKTLERYQ 421
+ K LE+Y+
Sbjct: 360 SMQKLLEKYE 389
Score = 69.3 bits (145), Expect(2) = 2e-040
Identities = 32/85 (37%), Positives = 51/85 (60%)
Frame = +2 / +3
Query: 464 ETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQL 643
+ Q QE+ + + LQ TQR + GE L S+KEL QLE Q+E L++ R KT++
Sbjct: 435 DPQCLKQEIENMEKRVRILQSTQRKMSGEGLALCSIKELNQLEGQVERGLNRVRATKTKV 614
Query: 644 MMEQVEELRRKERHLGEMNRQLKHK 718
+++++E+L++KE L E L K
Sbjct: 615 LVDEIEKLKQKEHVLREEKALLHKK 689
>gb|CX645838.1|CX645838 COLD1_5_D01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_5_D01_A029 5', mRNA sequence
Length = 705
Score = 117 bits (251), Expect(2) = 2e-040
Identities = 49/70 (70%), Positives = 57/70 (81%)
Frame = +2 / +2
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
M RG+ ++KRIEN +RQVT SKRRNGLLKKAYELSVLCDAEV LI+FS GKLYEF S
Sbjct: 167 MVRGKTQMKRIENPTSRQVTLSKRRNGLLKKAYELSVLCDAEVGLIVFSPSGKLYEFAST 346
Query: 392 GITKTLERYQ 421
+ K LE+Y+
Sbjct: 347 SMQKLLEKYE 376
Score = 69.3 bits (145), Expect(2) = 2e-040
Identities = 32/85 (37%), Positives = 51/85 (60%)
Frame = +2 / +2
Query: 464 ETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQL 643
+ Q QE+ + + LQ TQR + GE L S+KEL QLE Q+E L++ R KT++
Sbjct: 422 DPQCLKQEIENMEKRVRILQSTQRKMSGEGLALCSIKELNQLEGQVERGLNRVRATKTKV 601
Query: 644 MMEQVEELRRKERHLGEMNRQLKHK 718
+++++E+L++KE L E L K
Sbjct: 602 LVDEIEKLKQKEHVLREEKALLHKK 676
>gb|CO365540.1|CO365540 RTK1_17_D10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_D10_A029 5', mRNA sequence
Length = 877
Score = 133 bits (284), Expect(2) = 7e-040
Identities = 58/98 (59%), Positives = 74/98 (75%)
Frame = +2 / +2
Query: 128 PRCTQRRPCVR*SKLDRRKEGS*RSYVAMGRGRVELKRIENKINRQVTFSKRRNGLLKKA 307
PR + R S +R+ + + MGRGRV+L+RIENKI+RQVTFSKRRNGL+KKA
Sbjct: 269 PRTLGKGES*RPSGRERKSRWNSKGLFKMGRGRVQLRRIENKISRQVTFSKRRNGLMKKA 448
Query: 308 YELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQ 421
ELS+LCDAEV LI+FS++ KLYEF S+ +TK LERY+
Sbjct: 449 AELSILCDAEVGLIVFSNKDKLYEFASSSMTKILERYR 562
Score = 52.4 bits (108), Expect(2) = 7e-040
Identities = 23/50 (46%), Positives = 34/50 (68%)
Frame = +2 / +2
Query: 485 EMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRK 634
E++ L+ + + LQR++RHLLGE+L L +LQ LE+QLE AL + K
Sbjct: 617 ELTHLKEEVDRLQRSRRHLLGEDLHQLGATDLQHLEQQLEEALQKVTLTK 766
>gb|CO197079.1|CO197079 GEO1_3_F06.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_3_F06_A029 5', mRNA sequence
Length = 692
Score = 120 bits (257), Expect(2) = 2e-039
Identities = 50/85 (58%), Positives = 65/85 (76%)
Frame = +2 / +1
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRGR+ L++IE+ +RQVTFSKRRNGLLKKAYELSVLCD E+ LI+ S RGK++EF S
Sbjct: 235 MGRGRIRLRKIESATSRQVTFSKRRNGLLKKAYELSVLCDVELGLIVLSPRGKVHEFSST 414
Query: 392 GITKTLERYQHCCYNAQDSNGALSE 466
+ K LERY+ C ++ ++ A E
Sbjct: 415 CMQKMLERYEKCSEGSKTTSIAKEE 489
Score = 63.4 bits (132), Expect(2) = 2e-039
Identities = 24/61 (39%), Positives = 42/61 (68%)
Frame = +2 / +1
Query: 482 QEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVE 661
+E++ + + E L+RTQR +LGEEL ++ +L QLE Q+E L R RK+++++ Q+E
Sbjct: 508 REIANMEERIEILERTQRKMLGEELASCALNDLNQLESQVERCLRNIRARKSEILVTQIE 687
Query: 662 E 664
+
Sbjct: 688 Q 690
>gb|DR178004.1|DR178004 RTMNUT1_8_E05.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_8_E05_A029 5', mRNA sequence
Length = 779
Score = 116 bits (247), Expect(2) = 5e-039
Identities = 45/60 (75%), Positives = 56/60 (93%)
Frame = +2 / +1
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRG++E+K+IEN ++RQVTF KRR GL+KKAYELSVLCDA+VALI+FSSRGKLYE G++
Sbjct: 265 MGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGTS 444
Score = 66.6 bits (139), Expect(2) = 5e-039
Identities = 27/69 (39%), Positives = 48/69 (69%)
Frame = +2 / +1
Query: 482 QEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVE 661
QE++ L+ + + L+ T R+L+GE LG +S +EL QLE +L+ ++Q R +K +LM++++
Sbjct: 556 QEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELTQLESRLQRGINQVRAKKHELMLDEIR 735
Query: 662 ELRRKERHL 688
L+ KE L
Sbjct: 736 ALQSKEHTL 762
>gb|U90347.1|PRU90347 Pinus radiata putative MADS box transcription factor PrMADS6 mRNA,
complete cds
Length = 993
Score = 112 bits (239), Expect(2) = 8e-039
Identities = 44/71 (61%), Positives = 59/71 (83%)
Frame = +2 / +3
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
M RG+ ++++IE+ +RQVTFSKRRNGLLKKAYE+SVLCDA++ LI+FS RGK+YEF S
Sbjct: 75 MARGKTQMRKIESATSRQVTFSKRRNGLLKKAYEMSVLCDAQLGLIVFSPRGKVYEFSST 254
Query: 392 GITKTLERYQH 424
+ K L RY++
Sbjct: 255 CMQKMLARYEN 287
Score = 69.3 bits (145), Expect(2) = 8e-039
Identities = 29/85 (34%), Positives = 52/85 (61%)
Frame = +2 / +3
Query: 464 ETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQARQRKTQL 643
+ Q ++++ + + E L+ R +LG+EL ++K+L +LE Q+E L R RKT++
Sbjct: 330 DVQGLKRQIANMEERIEILESMHRKMLGDELASCALKDLNELESQVERGLRNVRARKTEI 509
Query: 644 MMEQVEELRRKERHLGEMNRQLKHK 718
++ ++E+L+RKE L E N L K
Sbjct: 510 LVTEIEQLQRKEWILSEENAFLGKK 584
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 759,056,147
Number of Sequences: 355925
Number of extensions: 12147523
Number of successful extensions: 65008
Number of sequences better than 1.0e-020: 194
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 20697054255
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)