TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750912.2.1
(1095 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN612931.1|DN612931 EST965981 Subtracted pine embryo lib... 298 8e-081
gb|DT628876.1|DT628876 EST1155446 Subtracted pine embryo li... 298 8e-081
gb|BX250119.1|BX250119 BX250119 Pinus pinaster differenciat... 247 4e-074
gb|DR685262.1|DR685262 EST1075339 Normalized pine embryo li... 138 3e-041
gb|DT632793.1|DT632793 EST1147724 Normalized pine embryo li... 138 3e-041
gb|DR054271.1|DR054271 RTCA1_16_G04.b1_A029 Roots minus cal... 149 3e-035
gb|BG317475.1|BG317475 NXPV_002_C11_F NXPV (Nsf Xylem Plani... 117 1e-032
gb|CF386566.1|CF386566 RTDR1_15_D11.b1_A015 Loblolly pine r... 113 2e-024
gb|CD023254.1|CD023254 NXPV_104_C10_F NXPV (Nsf Xylem Plani... 111 1e-023
gb|DR180737.1|DR180737 RTMNUT1_34_B08.g1_A029 Roots minus m... 67 1e-022
gb|BF516651.1|BF516651 NXSI_001_F05_F NXSI (Nsf Xylem Side ... 104 1e-021
>gb|DN612931.1|DN612931 EST965981 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABL95, mRNA sequence
Length = 596
Score = 298 bits (645), Expect(2) = 8e-081
Identities = 120/154 (77%), Positives = 133/154 (86%)
Frame = +1 / -1
Query: 1 DLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 180
DLHG+EWRFRHIFRGQPRRHLL +GWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR
Sbjct: 497 DLHGVEWRFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 318
Query: 181 QLXXXXXXXXXXXXMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNN 360
Q MHLGV+ATA HA+ TK+MF+VYYKPRTSPSEFIIPYDQYMES+K N
Sbjct: 317 QQNNVPSSVISSHSMHLGVIATASHAVTTKTMFSVYYKPRTSPSEFIIPYDQYMESMKIN 138
Query: 361 YSIGMRFRMRFEGEEAPEQRFTGTIVGCENLDPL 462
+S+GMRF+M+FEGEE PEQRFTGTIVG + DP+
Sbjct: 137 FSVGMRFKMKFEGEEVPEQRFTGTIVGISDADPV 36
Score = 218 bits (471), Expect = 5e-056
Identities = 100/153 (65%), Positives = 116/153 (75%)
Frame = -2 / +1
Query: 461 SGSRFSQPTIVPVNLCSGAXXXXXXXXXXXXIE*LFFTDSIY*SYGMINSEGLVLGL**T 282
+GS PT+VPVNLCSG E L F DSIY*S G++NS+GLVLGL**T
Sbjct: 37 TGSASLIPTMVPVNLCSGTSSPSNFILNLIPTEKLIFIDSIY*S*GIMNSDGLVLGL**T 216
Query: 281 VNMDFVLIACHAVARTPRCMLWLDITEEGTLDNCLIARLTPTRSSPFSPLRKMKASPATS 102
+NM FV+ AC AVA TPRCML LDIT++GTL +ARLTPTRSSPFSPL+K+ ASPATS
Sbjct: 217 LNMVFVVTACDAVAMTPRCML*LDITDDGTLFCWRMARLTPTRSSPFSPLKKINASPATS 396
Query: 101 LLELTKTLQPL*RRCLLGCPRKMWRNRHSMPCR 3
LLELTKTLQP+ +CLLG PRK+ RNRHS PC+
Sbjct: 397 LLELTKTLQPVVSKCLLG*PRKICRNRHSTPCK 495
Score = 148 bits (319), Expect = 4e-035
Identities = 67/152 (44%), Positives = 102/152 (67%)
Frame = -1 / +3
Query: 456 VKIFTANYCTSKPLLGGLFPFKPHPESHPNRIIVFY*LHILIIWNDKL*RARPRLVVDSE 277
+ I +N +SK LL FP K H ESH NR I F+*LHILII N +L* A P ++D++
Sbjct: 42 ISITYSNNGSSKSLLWDFFPLKLHLESHSNREIDFH*LHILIIRNYEL*WACPWFIIDTK 221
Query: 276 HGLCVNRVPCSRKNPEMHALARYNRRRYIRQLPHSAPNTNSKFTVFSSEENEGVSSNKPF 97
HGL N + CS + +MHA+ YNR I L H PN++++FT+F+ ++++ +S +K F
Sbjct: 222 HGLRCNCM*CSCNDTKMHAVTGYNR*WNIVLLAHGTPNSHTQFTIFTPQKDKCISCHKSF 401
Query: 96 GTDKNTPTTLKEMPPGLPAEDVAESPLHAMQI 1
+K+TP + K+MPP L A+D++E P ++MQ+
Sbjct: 402 RANKDTPASGKQMPPWLTAKDMSEPPFNSMQV 497
Score = 135 bits (289), Expect = 6e-031
Identities = 62/145 (42%), Positives = 88/145 (60%)
Frame = +3 / -3
Query: 6 AWHGVAIPPHLPRATQEASPSEWLECFCQFQKACCWRRLHFPQRRKR*TSSWC*ARYEAV 185
AW +A+P +L R+ +EA WLEC C K C R ++ + K *T+ *A +
Sbjct: 492 AWS*MAVPTYLSRSAKEAFAYHWLECLC*L*KTCGRRCIYLFEG*KW*TACGS*ACHAPA 313
Query: 186 V*CTFFGYI*PKHASRGSCDCMARD*HKVHVHCLLQA*DEPFRVYHSI*SIYGVSKKQLF 365
C+ YI +HAS C+C+ ++ HV CLL D+P RV++S+*SIYGV++ Q
Sbjct: 312 KQCSIICYIQSQHASWCHCNCITCSYNEDHV*CLL*TKDKPIRVHNSL*SIYGVNENQFL 133
Query: 366 YWDEIQDEV*RGRGPRAEVYWYNSW 440
W+EIQDEV* GR PRA++YW + W
Sbjct: 132 GWNEIQDEV*GGRSPRAKIYWNHCW 58
Score = 24.0 bits (46), Expect(2) = 8e-081
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1 / -1
Query: 463 WPDSSWRYLK 492
WP+S WR LK
Sbjct: 32 WPNSKWRCLK 3
>gb|DT628876.1|DT628876 EST1155446 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD303 5' end, mRNA sequence
Length = 596
Score = 298 bits (645), Expect(2) = 8e-081
Identities = 120/154 (77%), Positives = 133/154 (86%)
Frame = +1 / +1
Query: 1 DLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 180
DLHG+EWRFRHIFRGQPRRHLL +GWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR
Sbjct: 100 DLHGVEWRFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 279
Query: 181 QLXXXXXXXXXXXXMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNN 360
Q MHLGV+ATA HA+ TK+MF+VYYKPRTSPSEFIIPYDQYMES+K N
Sbjct: 280 QQNNVPSSVISSHSMHLGVIATASHAVTTKTMFSVYYKPRTSPSEFIIPYDQYMESMKIN 459
Query: 361 YSIGMRFRMRFEGEEAPEQRFTGTIVGCENLDPL 462
+S+GMRF+M+FEGEE PEQRFTGTIVG + DP+
Sbjct: 460 FSVGMRFKMKFEGEEVPEQRFTGTIVGISDADPV 561
Score = 218 bits (471), Expect = 5e-056
Identities = 100/153 (65%), Positives = 116/153 (75%)
Frame = -2 / -1
Query: 461 SGSRFSQPTIVPVNLCSGAXXXXXXXXXXXXIE*LFFTDSIY*SYGMINSEGLVLGL**T 282
+GS PT+VPVNLCSG E L F DSIY*S G++NS+GLVLGL**T
Sbjct: 560 TGSASLIPTMVPVNLCSGTSSPSNFILNLIPTEKLIFIDSIY*S*GIMNSDGLVLGL**T 381
Query: 281 VNMDFVLIACHAVARTPRCMLWLDITEEGTLDNCLIARLTPTRSSPFSPLRKMKASPATS 102
+NM FV+ AC AVA TPRCML LDIT++GTL +ARLTPTRSSPFSPL+K+ ASPATS
Sbjct: 380 LNMVFVVTACDAVAMTPRCML*LDITDDGTLFCWRMARLTPTRSSPFSPLKKINASPATS 201
Query: 101 LLELTKTLQPL*RRCLLGCPRKMWRNRHSMPCR 3
LLELTKTLQP+ +CLLG PRK+ RNRHS PC+
Sbjct: 200 LLELTKTLQPVVSKCLLG*PRKICRNRHSTPCK 102
Score = 148 bits (319), Expect = 4e-035
Identities = 67/152 (44%), Positives = 102/152 (67%)
Frame = -1 / -3
Query: 456 VKIFTANYCTSKPLLGGLFPFKPHPESHPNRIIVFY*LHILIIWNDKL*RARPRLVVDSE 277
+ I +N +SK LL FP K H ESH NR I F+*LHILII N +L* A P ++D++
Sbjct: 555 ISITYSNNGSSKSLLWDFFPLKLHLESHSNREIDFH*LHILIIRNYEL*WACPWFIIDTK 376
Query: 276 HGLCVNRVPCSRKNPEMHALARYNRRRYIRQLPHSAPNTNSKFTVFSSEENEGVSSNKPF 97
HGL N + CS + +MHA+ YNR I L H PN++++FT+F+ ++++ +S +K F
Sbjct: 375 HGLRCNCM*CSCNDTKMHAVTGYNR*WNIVLLAHGTPNSHTQFTIFTPQKDKCISCHKSF 196
Query: 96 GTDKNTPTTLKEMPPGLPAEDVAESPLHAMQI 1
+K+TP + K+MPP L A+D++E P ++MQ+
Sbjct: 195 RANKDTPASGKQMPPWLTAKDMSEPPFNSMQV 100
Score = 135 bits (289), Expect = 6e-031
Identities = 62/145 (42%), Positives = 88/145 (60%)
Frame = +3 / +3
Query: 6 AWHGVAIPPHLPRATQEASPSEWLECFCQFQKACCWRRLHFPQRRKR*TSSWC*ARYEAV 185
AW +A+P +L R+ +EA WLEC C K C R ++ + K *T+ *A +
Sbjct: 105 AWS*MAVPTYLSRSAKEAFAYHWLECLC*L*KTCGRRCIYLFEG*KW*TACGS*ACHAPA 284
Query: 186 V*CTFFGYI*PKHASRGSCDCMARD*HKVHVHCLLQA*DEPFRVYHSI*SIYGVSKKQLF 365
C+ YI +HAS C+C+ ++ HV CLL D+P RV++S+*SIYGV++ Q
Sbjct: 285 KQCSIICYIQSQHASWCHCNCITCSYNEDHV*CLL*TKDKPIRVHNSL*SIYGVNENQFL 464
Query: 366 YWDEIQDEV*RGRGPRAEVYWYNSW 440
W+EIQDEV* GR PRA++YW + W
Sbjct: 465 GWNEIQDEV*GGRSPRAKIYWNHCW 539
Score = 24.0 bits (46), Expect(2) = 8e-081
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1 / +1
Query: 463 WPDSSWRYLK 492
WP+S WR LK
Sbjct: 565 WPNSKWRCLK 594
>gb|BX250119.1|BX250119 BX250119 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP032F08, mRNA sequence
Length = 674
Score = 247 bits (535), Expect(2) = 4e-074
Identities = 98/154 (63%), Positives = 121/154 (78%)
Frame = +1 / +1
Query: 1 DLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 180
DLHG EWRFRHIFRGQPRRHLL +GWSVFVS KRLVAGDA +FLR ENGELR+G+RRA +
Sbjct: 115 DLHGREWRFRHIFRGQPRRHLLTTGWSVFVSYKRLVAGDAVLFLRDENGELRLGIRRASQ 294
Query: 181 QLXXXXXXXXXXXXMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNN 360
Q +H GVLA HA+ TKSMF +YY PRTSP+EF+IPY +Y++S ++
Sbjct: 295 QQSSVPSSVLSSHGIHSGVLAAVAHAVATKSMFHIYYNPRTSPTEFVIPYHKYVKSFNHS 474
Query: 361 YSIGMRFRMRFEGEEAPEQRFTGTIVGCENLDPL 462
+SIGMRF+MRFE E+A E+R+TGTIVG ++DP+
Sbjct: 475 FSIGMRFKMRFETEDATERRYTGTIVGIGDVDPM 576
Score = 132 bits (283), Expect(2) = 4e-033
Identities = 62/152 (40%), Positives = 91/152 (59%)
Frame = -1 / -3
Query: 456 VKIFTANYCTSKPLLGGLFPFKPHPESHPNRIIVFY*LHILIIWNDKL*RARPRLVVDSE 277
+ I +N C+S P +F FK H E HPNR V ++L+IWN K RARP +VV+ E
Sbjct: 570 INITYSNNCSSVPSFSCIFSFKSHFEPHPNRK*VVETFYVLVIWNHKFCRARPWIVVNVE 391
Query: 276 HGLCVNRVPCSRKNPEMHALARYNRRRYIRQLPHSAPNTNSKFTVFSSEENEGVSSNKPF 97
H C N + S +P M+A+A + RRY L S+ N+ +F++F ++ +SS KPF
Sbjct: 390 HTFCGNCMSYSS*HPRMYAMAGEH*RRYTALLLGSSSNS*PQFSIFIPQKKYSISSYKPF 211
Query: 96 GTDKNTPTTLKEMPPGLPAEDVAESPLHAMQI 1
T+K+TP+ ++MP L E + ESP +MQI
Sbjct: 210 VTNKDTPSCSEQMPARLTPEYMPESPFSSMQI 115
Score = 127 bits (273), Expect(2) = 5e-030
Identities = 62/109 (56%), Positives = 71/109 (65%)
Frame = -2 / -1
Query: 329 YGMINSEGLVLGL**TVNMDFVLIACHAVARTPRCMLWLDITEEGTLDNCLIARLTPTRS 150
YG+ NS GLVLGL** N+ FV A A TP CM WL+ TEEGTL C A P +
Sbjct: 443 YGITNSVGLVLGL**MWNILFVATA*ATAASTPECMPWLESTEEGTLLCCWEALRIPNLN 264
Query: 149 SPFSPLRKMKASPATSLLELTKTLQPL*RRCLLGCPRKMWRNRHSMPCR 3
SPFS RK ASPATSLL LTKTL P+ +CL G P + RN HS+PC+
Sbjct: 263 SPFSSRRKSTASPATSLL*LTKTLHPVVSKCLRG*PLNICRNLHSLPCK 117
Score = 72.5 bits (152), Expect(3) = 7e-022
Identities = 32/83 (38%), Positives = 47/83 (56%)
Frame = +3 / +3
Query: 192 CTFFGYI*PKHASRGSCDCMARD*HKVHVHCLLQA*DEPFRVYHSI*SIYGVSKKQLFYW 371
CTFF + P H G+ C + HK +V LLQ+ DEP+R+ SI + + +FYW
Sbjct: 306 CTFFSALQPWHTFGGASCCSSCSCHKKYVPHLLQSKDEPYRICDSISQVRKKFQPLIFYW 485
Query: 372 DEIQDEV*RGRGPRAEVYWYNSW 440
D +Q+E+* R +V+W N W
Sbjct: 486 DAVQNEI*N*RCN*KKVHWNNCW 554
Score = 51.9 bits (107), Expect(2) = 4e-074
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +1 / +1
Query: 463 WPDSSWRYLKVRWDEPSTIPRPDKVSPWKIE 555
WP+S WR KV WDE + R D+VSPW+IE
Sbjct: 580 WPNSRWRSFKVGWDEHAAQXRQDRVSPWEIE 672
Score = 39.5 bits (80), Expect(3) = 7e-022
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3 / +3
Query: 6 AWHGVAIPPHLPRATQEASPSEWLECFCQFQKACCWR 116
AW + IP ++ + +A +EC C QKAC WR
Sbjct: 120 AWKRMEIPAYIQGSASQAFAHYRMECLC*LQKACSWR 230
Score = 29.9 bits (59), Expect(3) = 7e-022
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3 / +3
Query: 462 MA*FQLEILEGALG*AFYYPAAR*GLSLEDRA 557
MA*F++EI++G +G*A A G S+ +RA
Sbjct: 579 MA*FKMEIVQGRMG*ACSTGXAGQGFSMGNRA 674
Score = 29.9 bits (59), Expect(2) = 4e-033
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = -2 / -1
Query: 557 GSIFQGETLSGRGIVEGSSQRTFKYLQLESGH 462
GSI GETLS SS T L LE GH
Sbjct: 674 GSISHGETLSCLSCAACSSHPTLNDLHLELGH 579
Score = 26.7 bits (52), Expect(2) = 5e-030
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1 / -3
Query: 555 LYLPGRDLIWPRDSRRLIPAHLQVSPTGIRP 463
L P R+ + P LIP++L+ SP+ IRP
Sbjct: 672 LDFPWRNPVLPXLCCMLIPSYLERSPS*IRP 580
>gb|DR685262.1|DR685262 EST1075339 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB186 3' end, mRNA sequence
Length = 841
Score = 138 bits (296), Expect(2) = 3e-041
Identities = 59/109 (54%), Positives = 72/109 (66%)
Frame = +1 / +2
Query: 133 RGENGELRVGVRRAMRQLXXXXXXXXXXXXMHLGVLATAWHAINTKSMFTVYYKPRTSPS 312
RGENGELR+G+RRA RQ HL VLA A A+ TKSMF V+Y PRTSP+
Sbjct: 2 RGENGELRLGIRRATRQKSGILSSVLSNQNAHLSVLAAAASAVATKSMFHVFYNPRTSPA 181
Query: 313 EFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGCENLDP 459
EFIIPY +Y++S K SIGMRF+MRFE E+ E+ +TG I + DP
Sbjct: 182 EFIIPYQKYVKSCKQPLSIGMRFKMRFETEDTAERSYTGMITAIGDADP 328
Score = 51.4 bits (106), Expect(2) = 3e-041
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +1 / +2
Query: 463 WPDSSWRYLKVRWDEPSTIPRPDKVSPWKIEPA 561
WP S WR LKV WDE + + ++VS W+IEP+
Sbjct: 335 WPGSKWRLLKVEWDEHAANEQQERVSAWEIEPS 433
>gb|DT632793.1|DT632793 EST1147724 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFN79 3' end, mRNA sequence
Length = 783
Score = 138 bits (296), Expect(2) = 3e-041
Identities = 59/109 (54%), Positives = 72/109 (66%)
Frame = +1 / +2
Query: 133 RGENGELRVGVRRAMRQLXXXXXXXXXXXXMHLGVLATAWHAINTKSMFTVYYKPRTSPS 312
RGENGELR+G+RRA RQ HL VLA A A+ TKSMF V+Y PRTSP+
Sbjct: 2 RGENGELRLGIRRATRQKSGILSSVLSNQNAHLSVLAAAASAVATKSMFHVFYNPRTSPA 181
Query: 313 EFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGCENLDP 459
EFIIPY +Y++S K SIGMRF+MRFE E+ E+ +TG I + DP
Sbjct: 182 EFIIPYQKYVKSCKQPLSIGMRFKMRFETEDTAERSYTGMITAIGDADP 328
Score = 51.4 bits (106), Expect(2) = 3e-041
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +1 / +2
Query: 463 WPDSSWRYLKVRWDEPSTIPRPDKVSPWKIEPA 561
WP S WR LKV WDE + + ++VS W+IEP+
Sbjct: 335 WPGSKWRLLKVEWDEHAANEQQERVSAWEIEPS 433
>gb|DR054271.1|DR054271 RTCA1_16_G04.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_16_G04_A029 3', mRNA sequence
Length = 631
Score = 149 bits (321), Expect = 3e-035
Identities = 63/84 (75%), Positives = 68/84 (80%)
Frame = +1 / +2
Query: 49 PRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQLXXXXXXXXXXXXMH 228
PRRHLL +GWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQ MH
Sbjct: 2 PRRHLLTTGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQNNVPSSVISSHSMH 181
Query: 229 LGVLATAWHAINTKSMFTVYYKPR 300
LGV+ATA HA+ TK+MF+VYYKPR
Sbjct: 182 LGVIATASHAVTTKTMFSVYYKPR 253
Score = 139 bits (299), Expect = 3e-032
Identities = 63/84 (75%), Positives = 72/84 (85%)
Frame = -2 / -2
Query: 299 LGL**TVNMDFVLIACHAVARTPRCMLWLDITEEGTLDNCLIARLTPTRSSPFSPLRKMK 120
LGL**T+NM FV+ AC AVA TPRCML LDIT++GTL +ARLTPTRSSPFSPL+K+
Sbjct: 252 LGL**TLNMVFVVTACDAVAMTPRCML*LDITDDGTLFCWRMARLTPTRSSPFSPLKKIN 73
Query: 119 ASPATSLLELTKTLQPL*RRCLLG 48
ASPATSLLELTKTLQP+ +CLLG
Sbjct: 72 ASPATSLLELTKTLQPVVSKCLLG 1
>gb|BG317475.1|BG317475 NXPV_002_C11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_002_C11 5' similar to Arabidopsis
thaliana sequence At5g62000 auxin response factor - like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 261
Score = 117 bits (250), Expect(2) = 1e-032
Identities = 45/57 (78%), Positives = 52/57 (91%)
Frame = +1 / +1
Query: 292 KPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGCENLDPL 462
KPRTSPSEFIIPYDQYMES+K N+S+GMRF+M+FEGEE PEQRFTGTIVG + DP+
Sbjct: 1 KPRTSPSEFIIPYDQYMESMKINFSVGMRFKMKFEGEEVPEQRFTGTIVGISDADPV 171
Score = 43.7 bits (89), Expect(2) = 1e-032
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1 / +1
Query: 463 WPDSSWRYLKVRWDEPSTIPRPDKVSP 543
WP+S WR LK +WDE S I R ++ SP
Sbjct: 175 WPNSKWRCLKXQWDEISAIARXERXSP 255
>gb|CF386566.1|CF386566 RTDR1_15_D11.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_15_D11_A015 3', mRNA
sequence
Length = 419
Score = 113 bits (242), Expect = 2e-024
Identities = 44/48 (91%), Positives = 46/48 (95%)
Frame = +1 / -2
Query: 1 DLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGEN 144
DLHG EWRFRHIFRGQPRRHLL +GWSVFVS+KRLVAGDAFIFLRGEN
Sbjct: 145 DLHGTEWRFRHIFRGQPRRHLLTTGWSVFVSAKRLVAGDAFIFLRGEN 2
>gb|CD023254.1|CD023254 NXPV_104_C10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_104_C10 5' similar to Arabidopsis
thaliana sequence At5g62000 auxin response factor - like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 189
Score = 111 bits (237), Expect = 1e-023
Identities = 43/50 (86%), Positives = 48/50 (96%)
Frame = +1 / +1
Query: 292 KPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVG 441
KPRTSPSEFIIPYDQYMES+K N+S+GMRF+M+FEGEE PEQRFTGTIVG
Sbjct: 1 KPRTSPSEFIIPYDQYMESMKINFSVGMRFKMKFEGEEVPEQRFTGTIVG 150
>gb|DR180737.1|DR180737 RTMNUT1_34_B08.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_34_B08_A029 5', mRNA sequence
Length = 690
Score = 66.5 bits (139), Expect(3) = 1e-022
Identities = 21/31 (67%), Positives = 27/31 (87%)
Frame = +1 / +2
Query: 463 WPDSSWRYLKVRWDEPSTIPRPDKVSPWKIE 555
WP+S WR LKV+WDE S +PRP++VSPW+IE
Sbjct: 83 WPESKWRSLKVQWDETSVVPRPERVSPWEIE 175
Score = 46.4 bits (95), Expect(3) = 1e-022
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +1 / +2
Query: 385 MRFEGEEAPEQRFTGTIVGCENLD 456
MRFEGEE+PE+RFTGTI+G +D
Sbjct: 2 MRFEGEESPERRFTGTIIGMGEVD 73
Score = 31.8 bits (63), Expect(3) = 1e-022
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1 / +2
Query: 559 ASSPPVNPLPLSRGKRPRQNAPPPSPE 639
ASS +NPLP R K+PR N S E
Sbjct: 185 ASSAALNPLPAPRTKKPRPNLVSSSQE 265
>gb|BF516651.1|BF516651 NXSI_001_F05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_001_F05 5' similar to Arabidopsis thaliana
sequence At2g28350 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 398
Score = 104 bits (222), Expect = 1e-021
Identities = 40/60 (66%), Positives = 47/60 (78%)
Frame = +1 / +2
Query: 1 DLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 180
D+HG W+FRHI+RG PRRHLL +GWS FV+ K+LVAGDA +FLR GEL VGVRR R
Sbjct: 35 DVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDAIVFLRSVTGELCVGVRRXTR 214
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.317 0.131 0.410
Matrix: BLOSUM62
Number of Hits to DB: 560,445,636
Number of Sequences: 355925
Number of extensions: 8331834
Number of successful extensions: 58072
Number of sequences better than 1.0e-020: 15
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 16822305240
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)