TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750698.2.1
(1126 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR695015.1|DR695015 EST1085108 Normalized pine embryo li... 236 e-101
gb|CF394308.1|CF394308 RTDS2_4_E12.g1_A021 Drought-stressed... 348 e-100
gb|CO160206.1|CO160206 FLD1_19_A08.g1_A029 Root flooded Pin... 344 6e-094
gb|DT638958.1|DT638958 EST1153889 Normalized pine embryo li... 204 2e-091
gb|CX714621.1|CX714621 RTPQ1_24_A11.b1_A032 Roots treated w... 314 1e-084
gb|CF394229.1|CF394229 RTDS2_4_E12.b1_A021 Drought-stressed... 206 2e-052
gb|CO160132.1|CO160132 FLD1_19_A08.b1_A029 Root flooded Pin... 186 3e-046
gb|DR163121.1|DR163121 RTFE1_41_C05.b1_A029 Roots minus iro... 59 7e-024
gb|CV032983.1|CV032983 RTNACL1_19_B08.g1_A029 Roots plus ad... 59 7e-024
>gb|DR695015.1|DR695015 EST1085108 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEJ49 3' end, mRNA sequence
Length = 871
Score = 236 bits (510), Expect(2) = e-101
Identities = 94/121 (77%), Positives = 109/121 (90%)
Frame = +1 / +3
Query: 250 FGNLGEDAVDQFFPPTGLVNVDHTMKIMQEETFGPIIPIMKFSSDEEAIKLANDSKYGLG 429
FG+LG+D V QF+PPT ++NV+H+M +MQEE FGPII IMKFSSDEEAI LAND+ YGLG
Sbjct: 507 FGSLGDDVVGQFYPPTVILNVNHSMHLMQEEIFGPIIAIMKFSSDEEAIMLANDTNYGLG 686
Query: 430 CAVFSGNQKRAIRIASQLHCGVAAINDFASSYMCQSLPFGGVKDSGFGRFAGVEGLRACC 609
CAVFSG+Q+RA IAS+++CG A INDFASSYMCQSLPFGGVK+SGFGRFAGVEGLRACC
Sbjct: 687 CAVFSGSQRRARSIASRIYCGFAVINDFASSYMCQSLPFGGVKNSGFGRFAGVEGLRACC 866
Query: 610 L 612
L
Sbjct: 867 L 869
Score = 153 bits (329), Expect(2) = e-101
Identities = 60/79 (75%), Positives = 71/79 (89%)
Frame = +1 / +3
Query: 10 AALQSSGQNCAGAERFYVHDDIYSAFVSQIVKTVKSISVGPPLSGRYDMGAICMIEHSEK 189
AALQSSGQNCAGAERFYVH D+Y +F +Q++K VKS+ VGPPL RYDMGAIC+ EH++K
Sbjct: 261 AALQSSGQNCAGAERFYVHQDVYDSFKAQVIKIVKSVRVGPPLEARYDMGAICLQEHADK 440
Query: 190 LQNLVNDALDKGAEIAVRG 246
LQ+LVNDAL+KGAEIAVRG
Sbjct: 441 LQSLVNDALEKGAEIAVRG 497
Score = 149 bits (319), Expect(2) = 3e-062
Identities = 69/98 (70%), Positives = 75/98 (76%)
Frame = -3 / -1
Query: 542 GKDWHM*LEAKSLIAATPQCNWDAILMARFWLPEKTAQPRPYFESFASLIASSSELNFMI 363
G DWH+*LEAKSLI A PQ DAI +AR WLPE TAQP P F SFAS+IASSSELNFMI
Sbjct: 799 GNDWHI*LEAKSLITANPQYILDAIDLARRWLPENTAQPSP*FVSFASIIASSSELNFMI 620
Query: 362 GIIGPNVSSCIIFIV*STFTRPVGGKN*STASSPRLPK 249
+IGPN+SSCI I * T + VGG N* T SSPRLPK
Sbjct: 619 AMIGPNISSCIKCIE*FTLSITVGG*N*PTTSSPRLPK 506
Score = 111 bits (236), Expect(2) = 3e-062
Identities = 52/79 (65%), Positives = 55/79 (69%)
Frame = -3 / -1
Query: 245 PLTAISAPLSRASLTRF*SFSECSIIQIAPMSYLPDNGGPTLIDLTVFTICETKAE*MSS 66
PLTAISAP S+AS TR *S S CS QIAP+SYL GGPT D T+ K * S
Sbjct: 496 PLTAISAPFSKASFTRL*SLSACSCKQIAPISYLASKGGPTRTDFTILIT*ALKES*TS* 317
Query: 65 *T*NLSAPAQFCPLDCRAA 9
T*NLSAPAQFCPLDCRAA
Sbjct: 316 CT*NLSAPAQFCPLDCRAA 260
Score = 88.6 bits (187), Expect(2) = 2e-030
Identities = 44/121 (36%), Positives = 67/121 (55%)
Frame = -2 / -3
Query: 612 KAASSQAFYASKSPESAVFNTTEWQRLAHVT*SKIIDCCYPTV*LGRYSDGTLLVARKNS 433
K A ++ F SKS + + ++T+WQ LAH+ SK+I+ TV Y L +R+ S
Sbjct: 869 KTACTKTFNTSKSSKPTILHSTKWQ*LAHIARSKVINYSKSTVYPRCY*SCPTLASREYS 690
Query: 432 TAKTIF*VVCKFDSLFIRTEFHDWYNRSKCLFLHNFHCVINIHQASWWEKLINCIFPKIA 253
AK+I ++C+ SL IR E HD + SK L LH H +I+I W +L N + + +
Sbjct: 689 AAKSIVCIICQHYSLLIRAELHDCNDWSKYLLLHQMH*MIHIKYYCRWVELTNHVISQTS 510
Query: 252 K 250
K
Sbjct: 509 K 507
Score = 87.7 bits (185), Expect(3) = 7e-024
Identities = 44/98 (44%), Positives = 53/98 (54%)
Frame = +3 / +2
Query: 249 FWQSWGRCS*SIFPTNWPGEC*SHNENYARRDIWTYYTNHEIQF**RGYQTCKRLKIWSW 428
FW+S SI PT C S N AR DIWT + NHE+Q ** GY K K+W+W
Sbjct: 506 FWKSGR*RGWSILPTYSNT*CESFNAFDARGDIWTNHCNHEVQL**GGYNAGK*YKLWTW 685
Query: 429 LCCFFGQPEACHQNSVPVTLWGSSNQ*FCFKLHVPVFA 542
L C +P + NS+ LW N * CF L+VPV A
Sbjct: 686 LRCILWKPASGKINSIEDILWICCN**LCF*LYVPVIA 799
Score = 64.8 bits (135), Expect(2) = 2e-030
Identities = 35/77 (45%), Positives = 48/77 (62%)
Frame = -2 / -3
Query: 240 DGNFGTFV*SIINKILKFLRVLNHTDCTHVISA**WGANTYRFDCLHYL*NKGRIDVIVN 61
D TF+ SII+K LKF+ +L TDC+H+I * +T+RF L L K ID++++
Sbjct: 491 DCYLSTFLQSIIHKTLKFISMLL*TDCSHIIPCL*RRPHTHRFHNLDNLSLKRIIDILMH 312
Query: 60 IKSFSTSAILPTRLQSS 10
IK S S +LPT L SS
Sbjct: 311 IKPLSASTVLPT*L*SS 261
Score = 31.3 bits (62), Expect(3) = 7e-024
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3 / +2
Query: 6 RSCSAI*WAELRWC*KILCS 65
+ CS I WAEL W *++LC+
Sbjct: 257 QGCSTIKWAELCWR*EVLCA 316
Score = 29.9 bits (59), Expect(3) = 7e-024
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +2 / +1
Query: 149 MTWVQSV*LSTLRNFRILLMML*TKV 226
M W QSV S L NF++L MML KV
Sbjct: 400 MIWEQSVYKSMLINFKVL*MMLWRKV 477
>gb|CF394308.1|CF394308 RTDS2_4_E12.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_4_E12_A021 5', mRNA sequence
Length = 758
Score = 348 bits (755), Expect(2) = e-100
Identities = 137/184 (74%), Positives = 164/184 (89%)
Frame = +1 / +2
Query: 250 FGNLGEDAVDQFFPPTGLVNVDHTMKIMQEETFGPIIPIMKFSSDEEAIKLANDSKYGLG 429
FG+LG+D V QF+PPT ++NV+H+M +MQEE FGPII IMKFSSDEEAI LAND+ YGLG
Sbjct: 65 FGSLGDDVVGQFYPPTVILNVNHSMHLMQEEIFGPIIAIMKFSSDEEAIMLANDTNYGLG 244
Query: 430 CAVFSGNQKRAIRIASQLHCGVAAINDFASSYMCQSLPFGGVKDSGFGRFAGVEGLRACC 609
CAVFSG+Q+RA IAS+++CG A INDFASSYMCQSLPFGGVK+SGFGRFAGVEGLRACC
Sbjct: 245 CAVFSGSQRRARSIASRIYCGFAVINDFASSYMCQSLPFGGVKNSGFGRFAGVEGLRACC 424
Query: 610 LVKSVVEDRLWPYIRTVIPKPIQYPVSEHGFEFQQLLVETLYGYSVWDRLRSLVNLIKMV 789
L+K+VVEDR WPYI+T IPKP+QYPV+E+ FE Q+ LVETLYG S+WDRLR LVN+IK++
Sbjct: 425 LIKAVVEDRWWPYIKTKIPKPLQYPVAENAFEVQESLVETLYGLSIWDRLRGLVNVIKLL 604
Query: 790 TEQN 801
+E N
Sbjct: 605 SEPN 616
Score = 149 bits (319), Expect(3) = 2e-056
Identities = 69/98 (70%), Positives = 75/98 (76%)
Frame = -3 / -3
Query: 542 GKDWHM*LEAKSLIAATPQCNWDAILMARFWLPEKTAQPRPYFESFASLIASSSELNFMI 363
G DWH+*LEAKSLI A PQ DAI +AR WLPE TAQP P F SFAS+IASSSELNFMI
Sbjct: 357 GNDWHI*LEAKSLITANPQYILDAIDLARRWLPENTAQPSP*FVSFASIIASSSELNFMI 178
Query: 362 GIIGPNVSSCIIFIV*STFTRPVGGKN*STASSPRLPK 249
+IGPN+SSCI I * T + VGG N* T SSPRLPK
Sbjct: 177 AMIGPNISSCIKCIE*FTLSITVGG*N*PTTSSPRLPK 64
Score = 121 bits (259), Expect = 9e-027
Identities = 63/175 (36%), Positives = 96/175 (54%)
Frame = -2 / -2
Query: 774 IHKGPQPVPHAIAIQSLHKQLLELKSML*DGILDRLRDHCSNIWPQSIFYNRLHKAASSQ 595
IH+ +P+P A I + + L+LK +L D IL L + ++ P SI YN K A ++
Sbjct: 589 IHQSSEPIPDAQTI*CFN*RFLDLKGVLCDRILQWLWNLGLDVRPPSILYNGFDKTACTK 410
Query: 594 AFYASKSPESAVFNTTEWQRLAHVT*SKIIDCCYPTV*LGRYSDGTLLVARKNSTAKTIF 415
F SKS + + ++T+WQ LAH+ SK+I+ TV Y L +R+ S AK+I
Sbjct: 409 TFNTSKSSKPTILHSTKWQ*LAHIARSKVINYSKSTVYPRCY*SCPTLASREYSAAKSIV 230
Query: 414 *VVCKFDSLFIRTEFHDWYNRSKCLFLHNFHCVINIHQASWWEKLINCIFPKIAK 250
++C+ SL IR E HD + SK L LH H +I+I W +L N + + +K
Sbjct: 229 CIICQHYSLLIRAELHDCNDWSKYLLLHQMH*MIHIKYYCRWVELTNHVISQTSK 65
Score = 78.0 bits (164), Expect(3) = 2e-056
Identities = 35/62 (56%), Positives = 40/62 (64%)
Frame = -3 / -3
Query: 779 IRFTRDRNLSHTL*PYRVSTSNCWNSNPCSETGYWIGFGITVLIYGHNLSSTTDFTRQQA 600
I FT +LS L PY VST + W S S TGY GFGI VL+YGH+LSSTT RQ A
Sbjct: 594 ITFTNPLSLSQMLKPYSVSTRDSWTSKAFSATGYCNGFGILVLMYGHHLSSTTALIRQHA 415
Query: 599 RK 594
R+
Sbjct: 414 RR 409
Score = 39.1 bits (79), Expect(2) = e-100
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +1 / +2
Query: 193 QNLVNDALDKGAEIAVRG 246
Q+LVNDAL+KGAEIAVRG
Sbjct: 2 QSLVNDALEKGAEIAVRG 55
Score = 32.2 bits (64), Expect(3) = 2e-056
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = -3 / -3
Query: 245 PLTAISAPLSRASLTRF* 192
PLTAISAP S+AS TR *
Sbjct: 54 PLTAISAPFSKASFTRL* 1
>gb|CO160206.1|CO160206 FLD1_19_A08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_19_A08_A029 5', mRNA sequence
Length = 798
Score = 344 bits (746), Expect = 6e-094
Identities = 136/183 (74%), Positives = 162/183 (88%)
Frame = +1 / +1
Query: 253 GNLGEDAVDQFFPPTGLVNVDHTMKIMQEETFGPIIPIMKFSSDEEAIKLANDSKYGLGC 432
G+LG+D V QF+PPT ++NV+H+M +MQEE FGPII IMKFSSDEEAI LAND+ YGLGC
Sbjct: 1 GSLGDDVVGQFYPPTVILNVNHSMHLMQEEIFGPIIAIMKFSSDEEAIMLANDTNYGLGC 180
Query: 433 AVFSGNQKRAIRIASQLHCGVAAINDFASSYMCQSLPFGGVKDSGFGRFAGVEGLRACCL 612
AVFSG+Q+RA IAS++ CG A INDFASSYMCQSLPFGGVK+SGFGRFAGVEGLRACCL
Sbjct: 181 AVFSGSQRRARSIASRISCGFAVINDFASSYMCQSLPFGGVKNSGFGRFAGVEGLRACCL 360
Query: 613 VKSVVEDRLWPYIRTVIPKPIQYPVSEHGFEFQQLLVETLYGYSVWDRLRSLVNLIKMVT 792
+K+VVEDR WPYI+T IPKP+QYPV+E+ FE Q+ LVETLYG S+WDRLR LVN+IK+++
Sbjct: 361 IKAVVEDRWWPYIKTKIPKPLQYPVAENAFEVQESLVETLYGLSIWDRLRGLVNVIKLLS 540
Query: 793 EQN 801
E N
Sbjct: 541 EPN 549
Score = 143 bits (306), Expect(2) = 1e-050
Identities = 67/96 (69%), Positives = 73/96 (76%)
Frame = -3 / -2
Query: 542 GKDWHM*LEAKSLIAATPQCNWDAILMARFWLPEKTAQPRPYFESFASLIASSSELNFMI 363
G DWH+*LEAKSLI A PQ DAI +AR WLPE TAQP P F SFAS+IASSSELNFMI
Sbjct: 290 GNDWHI*LEAKSLITANPQDILDAIDLARRWLPENTAQPSP*FVSFASIIASSSELNFMI 111
Query: 362 GIIGPNVSSCIIFIV*STFTRPVGGKN*STASSPRL 255
+IGPN+SSCI I * T + VGG N* T SSPRL
Sbjct: 110 AMIGPNISSCIKCIE*FTLSITVGG*N*PTTSSPRL 3
Score = 78.0 bits (164), Expect(2) = 1e-050
Identities = 35/62 (56%), Positives = 40/62 (64%)
Frame = -3 / -2
Query: 779 IRFTRDRNLSHTL*PYRVSTSNCWNSNPCSETGYWIGFGITVLIYGHNLSSTTDFTRQQA 600
I FT +LS L PY VST + W S S TGY GFGI VL+YGH+LSSTT RQ A
Sbjct: 527 ITFTNPLSLSQMLKPYSVSTRDSWTSKAFSATGYCNGFGILVLMYGHHLSSTTALIRQHA 348
Query: 599 RK 594
R+
Sbjct: 347 RR 342
Score = 73.0 bits (153), Expect(2) = 1e-022
Identities = 34/91 (37%), Positives = 54/91 (59%)
Frame = -2 / -1
Query: 774 IHKGPQPVPHAIAIQSLHKQLLELKSML*DGILDRLRDHCSNIWPQSIFYNRLHKAASSQ 595
IH+ +P+P A I + + L+LK +L D IL L + ++ P SI YN K A ++
Sbjct: 522 IHQSSEPIPDAQTI*CFN*RFLDLKGVLCDRILQWLWNLGLDVRPPSILYNGFDKTACTK 343
Query: 594 AFYASKSPESAVFNTTEWQRLAHVT*SKIID 502
F SKS + + ++T+WQ LAH+ SK+I+
Sbjct: 342 TFNTSKSSKPTILHSTKWQ*LAHIARSKVIN 250
Score = 54.2 bits (112), Expect(2) = 1e-022
Identities = 25/60 (41%), Positives = 35/60 (58%)
Frame = -2 / -1
Query: 453 LVARKNSTAKTIF*VVCKFDSLFIRTEFHDWYNRSKCLFLHNFHCVINIHQASWWEKLIN 274
L +R+ S AK+I ++C+ SL IR E HD + SK L LH H +I+I W +L N
Sbjct: 201 LASREYSAAKSIVCIICQHYSLLIRAELHDCNDWSKYLLLHQMH*MIHIKYYCRWVELTN 22
>gb|DT638958.1|DT638958 EST1153889 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHL44 3' end, mRNA sequence
Length = 840
Score = 204 bits (439), Expect(2) = 2e-091
Identities = 81/108 (75%), Positives = 96/108 (88%)
Frame = +1 / +2
Query: 250 FGNLGEDAVDQFFPPTGLVNVDHTMKIMQEETFGPIIPIMKFSSDEEAIKLANDSKYGLG 429
FG+LG+D V QF+PPT ++NV+H+M +MQEE FGPII IMKFSSDEEAI LAND+ YGLG
Sbjct: 515 FGSLGDDVVGQFYPPTVILNVNHSMHLMQEEIFGPIIAIMKFSSDEEAIMLANDTNYGLG 694
Query: 430 CAVFSGNQKRAIRIASQLHCGVAAINDFASSYMCQSLPFGGVKDSGFG 573
CAVFSG+Q+RA IAS+++CG A INDFASSYMCQSLPFGGVK+SGFG
Sbjct: 695 CAVFSGSQRRARSIASRIYCGFAVINDFASSYMCQSLPFGGVKNSGFG 838
Score = 153 bits (329), Expect(2) = 2e-091
Identities = 60/79 (75%), Positives = 71/79 (89%)
Frame = +1 / +2
Query: 10 AALQSSGQNCAGAERFYVHDDIYSAFVSQIVKTVKSISVGPPLSGRYDMGAICMIEHSEK 189
AALQSSGQNCAGAERFYVH D+Y +F +Q++K VKS+ VGPPL RYDMGAIC+ EH++K
Sbjct: 269 AALQSSGQNCAGAERFYVHQDVYDSFKAQVIKIVKSVRVGPPLEARYDMGAICLQEHADK 448
Query: 190 LQNLVNDALDKGAEIAVRG 246
LQ+LVNDAL+KGAEIAVRG
Sbjct: 449 LQSLVNDALEKGAEIAVRG 505
Score = 149 bits (319), Expect(2) = 3e-062
Identities = 69/98 (70%), Positives = 75/98 (76%)
Frame = -3 / -1
Query: 542 GKDWHM*LEAKSLIAATPQCNWDAILMARFWLPEKTAQPRPYFESFASLIASSSELNFMI 363
G DWH+*LEAKSLI A PQ DAI +AR WLPE TAQP P F SFAS+IASSSELNFMI
Sbjct: 807 GNDWHI*LEAKSLITANPQYILDAIDLARRWLPENTAQPSP*FVSFASIIASSSELNFMI 628
Query: 362 GIIGPNVSSCIIFIV*STFTRPVGGKN*STASSPRLPK 249
+IGPN+SSCI I * T + VGG N* T SSPRLPK
Sbjct: 627 AMIGPNISSCIKCIE*FTLSITVGG*N*PTTSSPRLPK 514
Score = 111 bits (236), Expect(2) = 3e-062
Identities = 52/79 (65%), Positives = 55/79 (69%)
Frame = -3 / -1
Query: 245 PLTAISAPLSRASLTRF*SFSECSIIQIAPMSYLPDNGGPTLIDLTVFTICETKAE*MSS 66
PLTAISAP S+AS TR *S S CS QIAP+SYL GGPT D T+ K * S
Sbjct: 504 PLTAISAPFSKASFTRL*SLSACSCKQIAPISYLASKGGPTRTDFTILIT*ALKES*TS* 325
Query: 65 *T*NLSAPAQFCPLDCRAA 9
T*NLSAPAQFCPLDCRAA
Sbjct: 324 CT*NLSAPAQFCPLDCRAA 268
Score = 87.7 bits (185), Expect(3) = 7e-024
Identities = 44/98 (44%), Positives = 53/98 (54%)
Frame = +3 / +1
Query: 249 FWQSWGRCS*SIFPTNWPGEC*SHNENYARRDIWTYYTNHEIQF**RGYQTCKRLKIWSW 428
FW+S SI PT C S N AR DIWT + NHE+Q ** GY K K+W+W
Sbjct: 514 FWKSGR*RGWSILPTYSNT*CESFNAFDARGDIWTNHCNHEVQL**GGYNAGK*YKLWTW 693
Query: 429 LCCFFGQPEACHQNSVPVTLWGSSNQ*FCFKLHVPVFA 542
L C +P + NS+ LW N * CF L+VPV A
Sbjct: 694 LRCILWKPASGKINSIEDILWICCN**LCF*LYVPVIA 807
Score = 76.7 bits (161), Expect(2) = 7e-027
Identities = 38/104 (36%), Positives = 58/104 (55%)
Frame = -2 / -3
Query: 561 VFNTTEWQRLAHVT*SKIIDCCYPTV*LGRYSDGTLLVARKNSTAKTIF*VVCKFDSLFI 382
+ ++T+WQ LAH+ SK+I+ TV Y L +R+ S AK+I ++C+ SL I
Sbjct: 826 ILHSTKWQ*LAHIARSKVINYSKSTVYPRCY*SCPTLASREYSAAKSIVCIICQHYSLLI 647
Query: 381 RTEFHDWYNRSKCLFLHNFHCVINIHQASWWEKLINCIFPKIAK 250
R E HD + SK L LH H +I+I W +L N + + +K
Sbjct: 646 RAELHDCNDWSKYLLLHQMH*MIHIKYYCRWVELTNHVISQTSK 515
Score = 64.8 bits (135), Expect(2) = 7e-027
Identities = 35/77 (45%), Positives = 48/77 (62%)
Frame = -2 / -3
Query: 240 DGNFGTFV*SIINKILKFLRVLNHTDCTHVISA**WGANTYRFDCLHYL*NKGRIDVIVN 61
D TF+ SII+K LKF+ +L TDC+H+I * +T+RF L L K ID++++
Sbjct: 499 DCYLSTFLQSIIHKTLKFISMLL*TDCSHIIPCL*RRPHTHRFHNLDNLSLKRIIDILMH 320
Query: 60 IKSFSTSAILPTRLQSS 10
IK S S +LPT L SS
Sbjct: 319 IKPLSASTVLPT*L*SS 269
Score = 31.3 bits (62), Expect(3) = 7e-024
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3 / +1
Query: 6 RSCSAI*WAELRWC*KILCS 65
+ CS I WAEL W *++LC+
Sbjct: 265 QGCSTIKWAELCWR*EVLCA 324
Score = 29.9 bits (59), Expect(3) = 7e-024
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +2 / +3
Query: 149 MTWVQSV*LSTLRNFRILLMML*TKV 226
M W QSV S L NF++L MML KV
Sbjct: 408 MIWEQSVYKSMLINFKVL*MMLWRKV 485
>gb|CX714621.1|CX714621 RTPQ1_24_A11.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_24_A11_A032 3', mRNA sequence
Length = 861
Score = 314 bits (679), Expect = 1e-084
Identities = 125/164 (76%), Positives = 146/164 (89%)
Frame = +1 / +1
Query: 310 VDHTMKIMQEETFGPIIPIMKFSSDEEAIKLANDSKYGLGCAVFSGNQKRAIRIASQLHC 489
V+H+M +MQEE FGPII IMKFSSDEEAI LAND+ YGLGCAVFSG+Q+RA IAS++ C
Sbjct: 1 VNHSMHLMQEEIFGPIIAIMKFSSDEEAIMLANDTNYGLGCAVFSGSQRRARSIASRISC 180
Query: 490 GVAAINDFASSYMCQSLPFGGVKDSGFGRFAGVEGLRACCLVKSVVEDRLWPYIRTVIPK 669
G A INDFASSYMCQSLPFGGVK+SGFGRFAGVEGLRACCL+K+VVEDR WPYI+T IPK
Sbjct: 181 GFAVINDFASSYMCQSLPFGGVKNSGFGRFAGVEGLRACCLIKAVVEDRWWPYIKTKIPK 360
Query: 670 PIQYPVSEHGFEFQQLLVETLYGYSVWDRLRSLVNLIKMVTEQN 801
P+QYPV+E+ FE Q+ LVETLYG S+WDRLR LVN+IK+++E N
Sbjct: 361 PLQYPVAENAFEVQESLVETLYGLSIWDRLRGLVNVIKLLSEPN 492
Score = 122 bits (261), Expect(2) = 2e-044
Identities = 53/71 (74%), Positives = 58/71 (81%)
Frame = -3 / -2
Query: 542 GKDWHM*LEAKSLIAATPQCNWDAILMARFWLPEKTAQPRPYFESFASLIASSSELNFMI 363
G DWH+*LEAKSLI A PQ DAI +AR WLPE TAQP P F SFAS+IASSSELNFMI
Sbjct: 233 GNDWHI*LEAKSLITANPQDILDAIDLARRWLPENTAQPSP*FVSFASIIASSSELNFMI 54
Query: 362 GIIGPNVSSCI 330
+IGPN+SSCI
Sbjct: 53 AMIGPNISSCI 21
Score = 78.0 bits (164), Expect(2) = 2e-044
Identities = 35/62 (56%), Positives = 40/62 (64%)
Frame = -3 / -2
Query: 779 IRFTRDRNLSHTL*PYRVSTSNCWNSNPCSETGYWIGFGITVLIYGHNLSSTTDFTRQQA 600
I FT +LS L PY VST + W S S TGY GFGI VL+YGH+LSSTT RQ A
Sbjct: 470 ITFTNPLSLSQMLKPYSVSTRDSWTSKAFSATGYCNGFGILVLMYGHHLSSTTALIRQHA 291
Query: 599 RK 594
R+
Sbjct: 290 RR 285
>gb|CF394229.1|CF394229 RTDS2_4_E12.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_4_E12_A021 3', mRNA sequence
Length = 688
Score = 206 bits (445), Expect = 2e-052
Identities = 80/102 (78%), Positives = 93/102 (91%)
Frame = +1 / +3
Query: 496 AAINDFASSYMCQSLPFGGVKDSGFGRFAGVEGLRACCLVKSVVEDRLWPYIRTVIPKPI 675
A INDFASSYMCQSLPFGGVK+SGFGRFAGVEGLRACCL+K+VVEDR WPYI+T IPKP+
Sbjct: 6 AVINDFASSYMCQSLPFGGVKNSGFGRFAGVEGLRACCLIKAVVEDRWWPYIKTKIPKPL 185
Query: 676 QYPVSEHGFEFQQLLVETLYGYSVWDRLRSLVNLIKMVTEQN 801
QYPV+E+ FE Q+ LVETLYG S+WDRLR LVN+IK+++E N
Sbjct: 186 QYPVAENAFEVQESLVETLYGLSIWDRLRGLVNVIKLLSEPN 311
>gb|CO160132.1|CO160132 FLD1_19_A08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_19_A08_A029 3', mRNA sequence
Length = 738
Score = 186 bits (400), Expect = 3e-046
Identities = 71/92 (77%), Positives = 84/92 (91%)
Frame = +1 / +2
Query: 526 MCQSLPFGGVKDSGFGRFAGVEGLRACCLVKSVVEDRLWPYIRTVIPKPIQYPVSEHGFE 705
MCQSLPFGGVK+SGFGRFAGVEGLRACCL+K+VVEDR WPYI+T IPKP+QYPV+E+ FE
Sbjct: 2 MCQSLPFGGVKNSGFGRFAGVEGLRACCLIKAVVEDRWWPYIKTKIPKPLQYPVAENAFE 181
Query: 706 FQQLLVETLYGYSVWDRLRSLVNLIKMVTEQN 801
Q+ LVETLYG S+WDRLR LVN+IK+++E N
Sbjct: 182 VQESLVETLYGLSIWDRLRGLVNVIKLLSEPN 277
>gb|DR163121.1|DR163121 RTFE1_41_C05.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_41_C05_A029 3', mRNA sequence
Length = 890
Score = 59.3 bits (123), Expect(3) = 7e-024
Identities = 25/58 (43%), Positives = 36/58 (62%)
Frame = +1 / +3
Query: 334 QEETFGPIIPIMKFSSDEEAIKLANDSKYGLGCAVFSGNQKRAIRIASQLHCGVAAIN 507
QEETFGP+ ++KF ++ E I+LAND+ GL +S + R R+A L G+ IN
Sbjct: 522 QEETFGPVAALIKFETEREVIELANDTDVGLAGYFYSRDIGRIWRVAEALEVGMVGIN 695
Score = 57.9 bits (120), Expect(3) = 7e-024
Identities = 27/82 (32%), Positives = 40/82 (48%)
Frame = +1 / +3
Query: 1 ARGAALQSSGQNCAGAERFYVHDDIYSAFVSQIVKTVKSISVGPPLSGRYDMGAICMIEH 180
A + + SGQ C A R YVH +Y+ F S++ + V + G L G +
Sbjct: 195 AIASKFRGSGQTCICANRIYVHSSVYAEFASRLAEKVAAFKAGDGLLSDSTHGPLIHERA 374
Query: 181 SEKLQNLVNDALDKGAEIAVRG 246
K++ V DA+ KGA+I V G
Sbjct: 375 VSKVERHVEDAVSKGAQILVGG 440
Score = 31.8 bits (63), Expect(3) = 7e-024
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1 / +3
Query: 535 SLPFGGVKDSGFGRFAG 585
++PFGGVK+SG GR G
Sbjct: 717 TIPFGGVKESGIGREGG 767
>gb|CV032983.1|CV032983 RTNACL1_19_B08.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_19_B08_A029 5', mRNA sequence
Length = 719
Score = 59.3 bits (123), Expect(3) = 7e-024
Identities = 25/58 (43%), Positives = 36/58 (62%)
Frame = +1 / -2
Query: 334 QEETFGPIIPIMKFSSDEEAIKLANDSKYGLGCAVFSGNQKRAIRIASQLHCGVAAIN 507
QEETFGP+ ++KF ++ E I+LAND+ GL +S + R R+A L G+ IN
Sbjct: 364 QEETFGPVAALIKFETEREVIELANDTDVGLAGYFYSRDIGRIWRVAEALEVGMVGIN 191
Score = 57.9 bits (120), Expect(3) = 7e-024
Identities = 27/82 (32%), Positives = 40/82 (48%)
Frame = +1 / -2
Query: 1 ARGAALQSSGQNCAGAERFYVHDDIYSAFVSQIVKTVKSISVGPPLSGRYDMGAICMIEH 180
A + + SGQ C A R YVH +Y+ F S++ + V + G L G +
Sbjct: 691 AIASKFRGSGQTCICANRIYVHSSVYAEFASRLAEKVAAFKAGDGLLSDSTHGPLIHERA 512
Query: 181 SEKLQNLVNDALDKGAEIAVRG 246
K++ V DA+ KGA+I V G
Sbjct: 511 VSKVERHVEDAVSKGAQILVGG 446
Score = 31.8 bits (63), Expect(3) = 7e-024
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1 / -2
Query: 535 SLPFGGVKDSGFGRFAG 585
++PFGGVK+SG GR G
Sbjct: 169 TIPFGGVKESGIGREGG 119
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 611,190,619
Number of Sequences: 355925
Number of extensions: 8618540
Number of successful extensions: 43969
Number of sequences better than 1.0e-020: 9
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 17193312120
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)