TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2750663.2.1
         (1282 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CV031793.1|CV031793  RTNACL1_3_F01.g1_A029 Roots plus add...   253   3e-066

>gb|CV031793.1|CV031793 RTNACL1_3_F01.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
           RTNACL1_3_F01_A029 5', mRNA sequence
          Length = 721

 Score =  253 bits (546), Expect = 3e-066
 Identities = 104/179 (58%), Positives = 135/179 (75%)
 Frame = -1 / +1

                                                                       
Query: 676 LASLQRCLTSTGELCLQSATWSHAFDLVIFSLLDDLLEISQNHSQKDYRNMEGSLVLAMK 497
           L SLQRCL +   +CL  + W   FD VIF++LDDLLEI+Q HS K+YRNMEG+L  AMK
Sbjct: 1   LLSLQRCLLAADAICLTPSVWLQCFDQVIFTMLDDLLEIAQGHSPKEYRNMEGTLHHAMK 180

                                                                       
Query: 496 LVAKVYLQLLPDLFGLSSFCKLWLGVLSRMEKYVKVKVRGKRSDRLQEVVPDLLKNILLV 317
            ++K++LQ L  LF L +F KLWLGVLSRMEKY+K K+RGK SD+LQE++P+LLKN+LL+
Sbjct: 181 FLSKIFLQFLDQLFTLPNFRKLWLGVLSRMEKYMKAKLRGKGSDKLQELIPELLKNMLLI 360

                                                                      
Query: 316 MKSKGILAKRSTIGGDSLWELTWLHAHNISASLLPDVFPSQEYEQQSSTGSPRGPSPVE 140
           +K++G+L +RST+GGDSLWELTWLH   IS SL  ++FP  E E ++ T S    S  E
Sbjct: 361 LKARGVLMQRSTLGGDSLWELTWLHVKGISPSLQAELFPDLEPEAETETKSDDYSSAAE 537



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 711,758,257
Number of Sequences: 355925
Number of extensions: 10772765
Number of successful extensions: 53979
Number of sequences better than 1.0e-020: 1
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 19792555740
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)