TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2649891.2.1
         (621 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR743865.1|DR743865  RTCU1_18_D05.g1_A029 Roots plus adde...    71   1e-022
gb|DR387113.1|DR387113  RTHG1_19_C01.g1_A029 Roots plus adde...    71   2e-021

>gb|DR743865.1|DR743865 RTCU1_18_D05.g1_A029 Roots plus added copper Pinus taeda cDNA clone
           RTCU1_18_D05_A029 5', mRNA sequence
          Length = 707

 Score = 70.7 bits (148), Expect(3) = 1e-022
 Identities = 27/65 (41%), Positives = 43/65 (66%)
 Frame = -2 / -2

                                                                       
Query: 614 MAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGELRS 435
           MA  G +  L + G + + + RVPC + G +IAF V+ G++  + A+L+EYE GDG+LR+
Sbjct: 664 MASAGASSNLLNTGVVSVLFRRVPCEYPGKNIAFNVNGGASDYWFAILIEYEDGDGDLRA 485

                
Query: 434 VELMQ 420
           V + Q
Sbjct: 484 VYIKQ 470




 Score = 48.7 bits (100), Expect(3) = 1e-022
 Identities = 17/27 (62%), Positives = 23/27 (85%)
 Frame = -2 / -2

                                      
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNF 219
           +GRT+ A++VIP  W PGATYRS+VN+
Sbjct: 361 TGRTLTANNVIPQNWQPGATYRSLVNY 281




 Score = 24.4 bits (47), Expect(3) = 1e-022
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2 / -2

                         
Query: 383 MQQSWGXVWRXNSG 342
           M+++WG  W  NSG
Sbjct: 445 MEETWGANWCLNSG 404



>gb|DR387113.1|DR387113 RTHG1_19_C01.g1_A029 Roots plus added mercury Pinus taeda cDNA
           clone RTHG1_19_C01_A029 5', mRNA sequence
          Length = 821

 Score = 70.7 bits (148), Expect(3) = 2e-021
 Identities = 27/65 (41%), Positives = 43/65 (66%)
 Frame = -2 / +3

                                                                       
Query: 614 MAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGELRS 435
           MA  G +  L + G + + + RVPC + G +IAF V+ G++  + A+L+EYE GDG+LR+
Sbjct: 444 MASAGASSNLLNTGVVSVLFRRVPCEYPGKNIAFNVNGGASDYWFAILIEYEDGDGDLRA 623

                
Query: 434 VELMQ 420
           V + Q
Sbjct: 624 VYIKQ 638




 Score = 44.6 bits (91), Expect(3) = 2e-021
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = -2 / +3

                                    
Query: 299 SGRTVVASDVIPAGWTPGATYRSVV 225
           +GRT+ A++VIP  W PGATYRS+V
Sbjct: 747 TGRTLTANNVIPQNWQPGATYRSLV 821




 Score = 24.4 bits (47), Expect(3) = 2e-021
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2 / +3

                         
Query: 383 MQQSWGXVWRXNSG 342
           M+++WG  W  NSG
Sbjct: 663 MEETWGANWCLNSG 704



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 268,500,661
Number of Sequences: 355925
Number of extensions: 3261255
Number of successful extensions: 41469
Number of sequences better than 1.0e-020: 2
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8412403350
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)