TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647895.2.1
(709 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR098107.1|DR098107 STRR1_39_D08.b1_A033 Stem Response R... 124 5e-028
gb|DR098181.1|DR098181 STRR1_39_D08.g1_A033 Stem Response R... 124 5e-028
gb|DR118894.1|DR118894 RTMG1_19_G09.g1_A029 Roots minus mag... 123 1e-027
gb|CV033059.1|CV033059 RTNACL1_20_B02.b1_A029 Roots plus ad... 121 5e-027
gb|DR742673.1|DR742673 RTCU1_5_F04.g2_A029 Roots plus added... 121 7e-027
gb|DR014856.1|DR014856 HEAT1_52_B11.b1_A029 Root at 37 C fo... 120 9e-027
gb|BX253610.1|BX253610 BX253610 Pinus pinaster differenciat... 119 2e-026
>gb|DR098107.1|DR098107 STRR1_39_D08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_39_D08_A033 3', mRNA sequence
Length = 770
Score = 124 bits (266), Expect = 5e-028
Identities = 54/120 (45%), Positives = 72/120 (60%)
Frame = -1 / +1
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELGD DI QC++A K GFEV+F ++L PWY +D FS + F+
Sbjct: 61 EIELGDGLPDIRTTNQCIEALKSAGFEVLFEENLTVSSTVPWYDPLDTSHFSLSSFRLTA 240
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GR +TR +V LEFLR+AP GS + L A++GL+ GGR+ IFT +F L RKPL +
Sbjct: 241 IGRFLTRNMVRMLEFLRLAPEGSERVSSFLEKAAEGLVAGGRKDIFTPMYFFLARKPLND 420
>gb|DR098181.1|DR098181 STRR1_39_D08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_39_D08_A033 5', mRNA sequence
Length = 741
Score = 124 bits (266), Expect = 5e-028
Identities = 54/120 (45%), Positives = 72/120 (60%)
Frame = -1 / +1
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELGD DI QC++A K GFEV+F ++L PWY +D FS + F+
Sbjct: 187 EIELGDGLPDIRTTNQCIEALKSAGFEVLFEENLTVSSTVPWYDPLDTSHFSLSSFRLTA 366
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GR +TR +V LEFLR+AP GS + L A++GL+ GGR+ IFT +F L RKPL +
Sbjct: 367 IGRFLTRNMVRMLEFLRLAPEGSERVSSFLEKAAEGLVAGGRKDIFTPMYFFLARKPLND 546
>gb|DR118894.1|DR118894 RTMG1_19_G09.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_19_G09_A029 5', mRNA sequence
Length = 578
Score = 123 bits (264), Expect = 1e-027
Identities = 54/118 (45%), Positives = 71/118 (60%)
Frame = -1 / +1
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELGD DI QC++A K GFEV+F ++L PWY +D FS + F+
Sbjct: 223 EIELGDGLPDIRTTNQCIEALKSAGFEVLFEENLTVSSTVPWYDPLDTSHFSLSSFRLTA 402
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPL 281
GR +TR +V LEFLR+AP GS + L A++GL+ GGR+ IFT +F L RKPL
Sbjct: 403 IGRFLTRNMVRMLEFLRLAPEGSERVSSFLEKAAEGLVAGGRKDIFTPMYFFLARKPL 576
>gb|CV033059.1|CV033059 RTNACL1_20_B02.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_20_B02_A029 3', mRNA sequence
Length = 771
Score = 121 bits (259), Expect = 5e-027
Identities = 52/120 (43%), Positives = 71/120 (59%)
Frame = -1 / +3
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELGD DI QC++A K G+EV+F ++L PWY +D FS + F+
Sbjct: 69 EIELGDGLPDIRTTNQCIEALKSAGYEVLFEENLTVSSTVPWYDPLDTSHFSLSSFRLTA 248
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GR +TR +V LEFLR+AP GS + L ++GL+ GGR+ IFT +F L RKPL +
Sbjct: 249 IGRFLTRNMVRMLEFLRLAPEGSERVSSFLEKVAEGLVAGGRKDIFTPMYFFLARKPLND 428
>gb|DR742673.1|DR742673 RTCU1_5_F04.g2_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_5_F04_A029 5', mRNA sequence
Length = 741
Score = 121 bits (258), Expect = 7e-027
Identities = 53/120 (44%), Positives = 71/120 (59%)
Frame = -1 / -1
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELGD DI QC++A K G EV+F ++L PWY +D FS + F+
Sbjct: 669 EIELGDGLPDIRTTNQCIEALKSAGSEVLFEENLTVSSTVPWYDPLDTSHFSLSSFRLTA 490
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GR +TR +V LEFLR+AP GS + L A++GL+ GGR+ IFT +F L RKPL +
Sbjct: 489 IGRFLTRNMVRMLEFLRLAPEGSERVSSFLEKAAEGLVAGGRKDIFTPMYFFLARKPLND 310
>gb|DR014856.1|DR014856 HEAT1_52_B11.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_52_B11_A029 3', mRNA sequence
Length = 751
Score = 120 bits (257), Expect = 9e-027
Identities = 52/117 (44%), Positives = 70/117 (59%)
Frame = -1 / -1
Query: 625 LGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPRPGR 446
LGD DI QC++A K GFEV+F ++L PWY +D FS + F+ GR
Sbjct: 745 LGDGLPDIRTTNQCIEALKSAGFEVLFEENLTVSSTVPWYDPLDTSHFSLSSFRLTAIGR 566
Query: 445 IVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
+TR +V LEFLR+AP GS + L A++GL+ GGR+ IFT +F L RKPL +
Sbjct: 565 FLTRNMVRMLEFLRLAPEGSERVSSFLEKAAEGLVAGGRKDIFTPMYFFLARKPLND 395
>gb|BX253610.1|BX253610 BX253610 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP085H05, mRNA sequence
Length = 462
Score = 119 bits (255), Expect = 2e-026
Identities = 53/120 (44%), Positives = 70/120 (58%)
Frame = -1 / +3
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELGD DI QC++A K GFEV+F ++L PWY +D FS F+
Sbjct: 99 EIELGDGLPDIRTTNQCIEALKSAGFEVLFEENLTVSSTVPWYDPLDTSHFSLNSFRLTA 278
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GR +TR +V LEFLR+AP GS + L A++GL+ GGR+ I T +F L RKPL +
Sbjct: 279 IGRFLTRNMVRMLEFLRLAPEGSERVSSFLEKAAEGLVAGGRKDISTPMYFFLARKPLND 458
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 350,146,068
Number of Sequences: 355925
Number of extensions: 5858303
Number of successful extensions: 54535
Number of sequences better than 1.0e-020: 7
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9866929035
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)