TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2623104.2.3
(1540 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR050772.1|DR050772 RTBOR1_25_C10.g1_A029 Roots plus add... 139 5e-049
gb|DR014638.1|DR014638 HEAT1_50_E08.g1_A029 Root at 37 C fo... 124 2e-041
gb|DR096226.1|DR096226 STRR1_26_D02.g1_A033 Stem Response R... 122 2e-041
gb|DR068962.1|DR068962 RTDK1_3_H10.g1_A029 Roots, dark Pinu... 119 5e-040
gb|CO197457.1|CO197457 GEO1_6_C03.g1_A029 Root gravitropism... 121 3e-039
gb|DR022672.1|DR022672 STRS1_52_E06.g1_A034 Shoot tip pitch... 145 9e-035
gb|DR072028.1|DR072028 RTDK1_23_D06.g1_A029 Roots, dark Pin... 128 1e-034
gb|BX252155.1|BX252155 BX252155 Pinus pinaster differenciat... 110 3e-034
gb|CO370082.1|CO370082 RTK1_65_H06.b1_A029 Roots minus pota... 134 5e-033
gb|BX253476.1|BX253476 BX253476 Pinus pinaster differenciat... 130 7e-032
gb|DR692937.1|DR692937 EST1083025 Normalized pine embryo li... 72 7e-032
gb|DR057265.1|DR057265 RTNIT1_4_E07.g1_A029 Roots minus nit... 120 9e-032
gb|DR050690.1|DR050690 RTBOR1_25_C10.b1_A029 Roots plus add... 90 2e-031
gb|CO172772.1|CO172772 NDL1_31_G01.g1_A029 Needles control ... 129 5e-031
gb|CO196845.1|CO196845 GEO1_2_A06.b1_A029 Root gravitropism... 127 8e-031
gb|CF665534.1|CF665534 RTCNT1_16_D01.g1_A029 Root control P... 127 1e-030
gb|BX250521.1|BX250521 BX250521 Pinus pinaster differenciat... 116 1e-030
gb|DR682452.1|DR682452 EST1072527 Normalized pine embryo li... 127 1e-028
gb|BQ695692.1|BQ695692 NXPV_031_E12_F NXPV (Nsf Xylem Plani... 122 8e-028
gb|BI202850.1|BI202850 NXPV_091_D07_F NXPV (Nsf Xylem Plani... 124 1e-027
gb|DR099658.1|DR099658 STRR1_57_E02.b1_A033 Stem Response R... 123 3e-027
gb|BG673824.1|BG673824 NXPV_075_E12_F NXPV (Nsf Xylem Plani... 122 5e-027
gb|BI397545.1|BI397545 NXPV_100_F08_F NXPV (Nsf Xylem Plani... 122 5e-027
gb|BQ695682.1|BQ695682 NXPV_031_D11_F NXPV (Nsf Xylem Plani... 122 5e-027
gb|DR099702.1|DR099702 STRR1_57_E02.g1_A033 Stem Response R... 122 5e-027
gb|DR057194.1|DR057194 RTNIT1_4_E07.b1_A029 Roots minus nit... 122 7e-027
gb|DR097874.1|DR097874 STRR1_37_D04.g1_A033 Stem Response R... 119 4e-026
gb|DR092421.1|DR092421 STRR1_1_G02.b1_A033 Stem Response Re... 116 4e-025
gb|BQ695778.1|BQ695778 NXPV_032_E11_F NXPV (Nsf Xylem Plani... 116 6e-025
gb|CO168808.1|CO168808 NDL1_2_D11.g1_A029 Needles control P... 102 2e-024
gb|CO370165.1|CO370165 RTK1_65_H06.g1_A029 Roots minus pota... 63 1e-023
gb|DR090030.1|DR090030 RTAL1_12_G03.b1_A029 Roots plus adde... 59 9e-023
gb|DR119823.1|DR119823 RTMG1_25_F06.g2_A029 Roots minus mag... 59 9e-023
gb|BI076998.1|BI076998 NXPV_085_G09_F NXPV (Nsf Xylem Plani... 106 3e-022
gb|DT637803.1|DT637803 EST1152734 Normalized pine embryo li... 72 4e-022
gb|CF669210.1|CF669210 RTCNT1_41_H08.b1_A029 Root control P... 54 8e-021
>gb|DR050772.1|DR050772 RTBOR1_25_C10.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_C10_A029 5', mRNA sequence
Length = 883
Score = 139 bits (299), Expect(4) = 5e-049
Identities = 59/143 (41%), Positives = 87/143 (60%)
Frame = +2 / +2
Query: 488 KKYDCKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTD 667
+ + C +P +LV+ +N + +T +S H+ + + + ++++ + APGDSPNTD
Sbjct: 182 RNHICLSVPTALVVYSSSNVHLRDLTFQDSPKIHVEIAQSTYVQVENLQIVAPGDSPNTD 361
Query: 668 GIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDV 847
GIH+ S V I N I GDDC+SI G+S + I + CGPGHGISIGSLG E V
Sbjct: 362 GIHVYASQHVVIQNCTIATGDDCVSIVTGSSDIQINKLVCGPGHGISIGSLGSGNSEDTV 541
Query: 848 TDINVKDCTLKKTANGVRIKAYE 916
+D+ V +L T NGVRIK ++
Sbjct: 542 SDVIVNGASLTATQNGVRIKTWQ 610
Score = 56.5 bits (117), Expect(4) = 5e-049
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +2 / +2
Query: 1034 NGASKVTVKDVTFKNITGTSSTPEAVNLLCSAKIPCTGVTMDDVNI 1171
N +S V V +VT+ +ITGTS+T EA+ L CS +PCT + M+ +++
Sbjct: 746 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISL 883
Score = 28.6 bits (56), Expect(4) = 5e-049
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2 / +2
Query: 392 WIEILRVDNLVITGKGKLDGQGPAVWS 472
W+ +V L I+G G +DG G W+
Sbjct: 83 WLMFSKVQGLTISGGGIIDGTGRKWWA 163
Score = 27.6 bits (54), Expect(4) = 5e-049
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2 / +2
Query: 938 ASKIHYENIKMEDSGYPIIIDMKYC 1012
A I +++++M + PIIID YC
Sbjct: 626 AQGIIFQHVRMTNVANPIIIDQYYC 700
>gb|DR014638.1|DR014638 HEAT1_50_E08.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_E08_A029 5', mRNA sequence
Length = 881
Score = 124 bits (265), Expect(3) = 2e-041
Identities = 51/96 (53%), Positives = 63/96 (65%)
Frame = +2 / -2
Query: 629 VNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGIS 808
+ + APGDSPNTDGIH+ S V I N I GDDC+SI G+S + I + CGPGHGIS
Sbjct: 880 LQIVAPGDSPNTDGIHVYASQHVVIQNCTIATGDDCVSIVTGSSDIQINKLVCGPGHGIS 701
Query: 809 IGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYE 916
IGSLG E V+D+ V +L T NGVRIK ++
Sbjct: 700 IGSLGSGNSEDTVSDVIVNGASLTATQNGVRIKTWQ 593
Score = 57.4 bits (119), Expect(3) = 2e-041
Identities = 21/47 (44%), Positives = 34/47 (72%)
Frame = +2 / -2
Query: 1034 NGASKVTVKDVTFKNITGTSSTPEAVNLLCSAKIPCTGVTMDDVNIK 1174
N +S V V +VT+ +ITGTS+T EA+ L CS +PCT + M+ ++++
Sbjct: 457 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISLR 317
Score = 27.6 bits (54), Expect(3) = 2e-041
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2 / -2
Query: 938 ASKIHYENIKMEDSGYPIIIDMKYC 1012
A I +++++M + PIIID YC
Sbjct: 577 AQGIIFQHVRMTNVANPIIIDQYYC 503
>gb|DR096226.1|DR096226 STRR1_26_D02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_26_D02_A033 5', mRNA sequence
Length = 802
Score = 122 bits (262), Expect(3) = 2e-041
Identities = 53/126 (42%), Positives = 75/126 (59%)
Frame = +2 / +3
Query: 539 NNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVI 718
+N + + +S H+ + + ++++ + APGDSPNTDGIH+ S V I N I
Sbjct: 15 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 194
Query: 719 GVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGV 898
GDDCISI +S + I+ + CGPGHGISIGSLG V+D+ V +L T NGV
Sbjct: 195 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGV 374
Query: 899 RIKAYE 916
RIK ++
Sbjct: 375 RIKTWQ 392
Score = 58.3 bits (121), Expect(3) = 2e-041
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +2 / +3
Query: 1034 NGASKVTVKDVTFKNITGTSSTPEAVNLLCSAKIPCTGVTMDDVNI 1171
N +S V V +VT+ +ITGTS+T EA+ L CS +PCT + M+ +++
Sbjct: 528 NHSSAVLVHNVTYTDITGTSATKEAIKLACSGSVPCTEIVMEGISL 665
Score = 28.1 bits (55), Expect(3) = 2e-041
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2 / +3
Query: 938 ASKIHYENIKMEDSGYPIIIDMKYC 1012
A +I ++++ M + PIIID YC
Sbjct: 408 AQRIMFQHVNMINVSNPIIIDQYYC 482
>gb|DR068962.1|DR068962 RTDK1_3_H10.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_3_H10_A029 5', mRNA sequence
Length = 794
Score = 119 bits (255), Expect(3) = 5e-040
Identities = 50/98 (51%), Positives = 64/98 (65%)
Frame = +2 / +1
Query: 623 KDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHG 802
+++ + A GDSPNTDGIH+ S V I N I GDDC+SI G+S + I + CGPGHG
Sbjct: 1 ENLQIVALGDSPNTDGIHVYASQHVVIQNCTIATGDDCVSIVTGSSGIQINKLVCGPGHG 180
Query: 803 ISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYE 916
ISIGSLG E V+D+ V +L T NGVRIK ++
Sbjct: 181 ISIGSLGSGDSEDTVSDVIVNGASLTATQNGVRIKTWQ 294
Score = 57.0 bits (118), Expect(3) = 5e-040
Identities = 21/47 (44%), Positives = 34/47 (72%)
Frame = +2 / +1
Query: 1034 NGASKVTVKDVTFKNITGTSSTPEAVNLLCSAKIPCTGVTMDDVNIK 1174
N +S V V +VT+ +ITGTS+T EA+ L CS +PCT + M+ ++++
Sbjct: 430 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKILMEGISLR 570
Score = 27.6 bits (54), Expect(3) = 5e-040
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2 / +1
Query: 938 ASKIHYENIKMEDSGYPIIIDMKYC 1012
A I +++++M + PIIID YC
Sbjct: 310 AQGIIFQHVRMTNVANPIIIDQYYC 384
>gb|CO197457.1|CO197457 GEO1_6_C03.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_6_C03_A029 5', mRNA sequence
Length = 580
Score = 121 bits (258), Expect(3) = 3e-039
Identities = 50/99 (50%), Positives = 65/99 (65%)
Frame = +2 / +3
Query: 620 IKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGH 799
++++ + APGDSPNTDGIH+ S V I N I GDDCISI +S + I+ + CGPGH
Sbjct: 33 VENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGH 212
Query: 800 GISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYE 916
GISIGSLG V+D+ V +L T NGVRIK ++
Sbjct: 213 GISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTWQ 329
Score = 52.4 bits (108), Expect(3) = 3e-039
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +2 / +3
Query: 1034 NGASKVTVKDVTFKNITGTSSTPEAVNLLCSAKIPCT 1144
N +S V V +VT+ +ITGTS+T EA+ L CS +PCT
Sbjct: 465 NHSSAVLVHNVTYTDITGTSATKEAIKLACSGSVPCT 575
Score = 28.1 bits (55), Expect(3) = 3e-039
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2 / +3
Query: 938 ASKIHYENIKMEDSGYPIIIDMKYC 1012
A +I ++++ M + PIIID YC
Sbjct: 345 AQRIMFQHVNMINVSNPIIIDQYYC 419
>gb|DR022672.1|DR022672 STRS1_52_E06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_52_E06_A034 5', mRNA sequence
Length = 566
Score = 145 bits (312), Expect(2) = 9e-035
Identities = 59/146 (40%), Positives = 86/146 (58%)
Frame = +2 / +2
Query: 488 KKYDCKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTD 667
K C+ P ++ + NN + +T+ NS+ H+ + +C ++ + V APG SPNTD
Sbjct: 77 KTNPCRSAPTAITFELCNNLRMMNLTVENSQQMHIKLRRCVGVVADHLKVLAPGHSPNTD 256
Query: 668 GIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDV 847
GIH+ S V I NT+IG GDDCISI + + + CGPGHGISIGSLG + V
Sbjct: 257 GIHVSASKDVVIKNTIIGTGDDCISIVSDSFNICTENIACGPGHGISIGSLGEGSAKAQV 436
Query: 848 TDINVKDCTLKKTANGVRIKAYEDAA 925
D+ V L+ T NG+RIK ++ ++
Sbjct: 437 ADVMVHGAFLENTTNGLRIKTWQGSS 514
Score = 22.6 bits (43), Expect(2) = 9e-035
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2 / +2
Query: 416 NLVITGKGKLDGQGPAVWSKNSCVKK 493
+L + G G G G W+++ +KK
Sbjct: 2 DLTVEGGGTFYGSGEQWWAESCKIKK 79
>gb|DR072028.1|DR072028 RTDK1_23_D06.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_23_D06_A029 5', mRNA sequence
Length = 671
Score = 128 bits (274), Expect(3) = 1e-034
Identities = 56/139 (40%), Positives = 81/139 (58%)
Frame = +2 / +3
Query: 500 CKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHM 679
C +P + V+ +N + + +S H+ + + ++++ + APGDSPNTDGIH+
Sbjct: 159 CLNIPTAFVVYSSSNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHI 338
Query: 680 GDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDIN 859
S V I N I GDDCISI +S + I+ + CGPGHGISIGSLG V+D+
Sbjct: 339 YASQHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVF 518
Query: 860 VKDCTLKKTANGVRIKAYE 916
V +L T NGVRIK ++
Sbjct: 519 VNGASLNGTQNGVRIKTWQ 575
Score = 29.5 bits (58), Expect(3) = 1e-034
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2 / +3
Query: 377 KDHGNWIEILRVDNLVITGKGKLDGQGPAVW 469
++ W+ +V L I G G +DG G W
Sbjct: 33 QERNEWLMFSKVQGLTINGGGIIDGTGQKWW 125
Score = 28.1 bits (55), Expect(3) = 1e-034
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2 / +3
Query: 938 ASKIHYENIKMEDSGYPIIIDMKYC 1012
A +I ++++ M + PIIID YC
Sbjct: 591 AQRIMFQHVNMINVSNPIIIDQYYC 665
>gb|BX252155.1|BX252155 BX252155 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP060E10, mRNA sequence
Length = 693
Score = 110 bits (235), Expect(4) = 3e-034
Identities = 47/111 (42%), Positives = 64/111 (57%)
Frame = +2 / +3
Query: 488 KKYDCKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTD 667
K C+ P + +D N + + NS+ H+ + + + + D+ V APGDSPNTD
Sbjct: 360 KSNPCRSAPTAFTVDLSWNVIIKDLNFQNSQQIHIVISRSIGVQVTDLLVVAPGDSPNTD 539
Query: 668 GIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSL 820
GIH+ S V I I GDDCISI G++ V + V CGPGHGIS+GSL
Sbjct: 540 GIHITRSQDVVINGCKIATGDDCISIVSGSANVKVGDVLCGPGHGISVGSL 692
Score = 34.5 bits (69), Expect(4) = 3e-034
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2 / +3
Query: 155 DITKLGASGNGKTDSTKAVQEAWASAC 235
++ GA G+G TD T+A AW AC
Sbjct: 12 NVESFGAQGDGITDDTQAFMNAWQMAC 92
Score = 30.9 bits (61), Expect(4) = 3e-034
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2 / +3
Query: 392 WIEILRVDNLVITGKGKLDGQGPAVWSKNSCVKK 493
W+ R++ + I G+G +DG G W+++ K
Sbjct: 261 WLVFSRLNGVTIQGEGVIDGSGQKWWAQSCKTNK 362
Score = 26.3 bits (51), Expect(4) = 3e-034
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2 / +3
Query: 278 FLVGPLNFTGPC 313
+LV P+ FTGPC
Sbjct: 135 YLVKPITFTGPC 170
>gb|CO370082.1|CO370082 RTK1_65_H06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_65_H06_A029 3', mRNA sequence
Length = 723
Score = 134 bits (288), Expect(2) = 5e-033
Identities = 58/139 (41%), Positives = 85/139 (61%)
Frame = +2 / -2
Query: 500 CKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHM 679
C +P +LV+ +N + +T +S H+ + + + ++++ + APGDSPNTDGIH+
Sbjct: 563 CLSVPTALVVYSSSNVHLRDLTFQDSPKIHVEIAQSTYVEVENLQIVAPGDSPNTDGIHV 384
Query: 680 GDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDIN 859
S V I N I GDDC+SI G+S + I + CGPGHGISIGSLG E V+++
Sbjct: 383 YASQHVVIQNCTIATGDDCVSIVTGSSDIQINKLVCGPGHGISIGSLGSGDLEDTVSEVI 204
Query: 860 VKDCTLKKTANGVRIKAYE 916
V +L T NGVRIK ++
Sbjct: 203 VNGASLTATQNGVRIKTWQ 147
Score = 27.6 bits (54), Expect(2) = 5e-033
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2 / -2
Query: 938 ASKIHYENIKMEDSGYPIIIDMKYC 1012
A I +++++M + PIIID YC
Sbjct: 131 AQGIIFQHVRMTNVANPIIIDQYYC 57
>gb|BX253476.1|BX253476 BX253476 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP083H12 similar to POLYGALACTURONASE
PRECURSOR, mRNA sequence
Length = 596
Score = 130 bits (279), Expect(2) = 7e-032
Identities = 55/139 (39%), Positives = 83/139 (59%)
Frame = +2 / +1
Query: 500 CKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHM 679
C +P + ++ +N + + +S H+ + + ++++ + APGDSPNTDGIH+
Sbjct: 121 CLSVPTAFMVYSSSNVHLRDLKFRDSPKIHVEIAMSTHVQVENLEIVAPGDSPNTDGIHI 300
Query: 680 GDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDIN 859
S V I N I GDDCISI +S + I+ + CGPGHGISIGSLG+ E V+D+
Sbjct: 301 YASQHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGKADSEDTVSDVF 480
Query: 860 VKDCTLKKTANGVRIKAYE 916
V +L T NG+RIK ++
Sbjct: 481 VNGASLNGTQNGLRIKTWQ 537
Score = 28.1 bits (55), Expect(2) = 7e-032
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2 / +1
Query: 392 WIEILRVDNLVITGKGKLDGQGPAVW 469
W+ +V L I G G +DG G W
Sbjct: 10 WLMFSKVQGLTINGGGIIDGTGQKWW 87
>gb|DR692937.1|DR692937 EST1083025 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADS13 3' end, mRNA sequence
Length = 757
Score = 71.6 bits (150), Expect(4) = 7e-032
Identities = 25/57 (43%), Positives = 37/57 (64%)
Frame = +2 / +1
Query: 152 FDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGPLNFTGPCKGD 322
F++ + GA +G TD+ KA AW +AC T + IP+G+FL+GP++F GPC D
Sbjct: 220 FNVQQYGAKADGITDNRKAFLAAWVAACSSTHTSVVYIPEGNFLLGPVSFEGPCNND 390
Score = 50.6 bits (104), Expect(4) = 7e-032
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +2 / +3
Query: 584 FHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGD 685
F ++ CK++ +++ + APGDSPNTDGIHMGD
Sbjct: 654 FPHSIRSCKNVNAEELTMEAPGDSPNTDGIHMGD 755
Score = 36.8 bits (74), Expect(4) = 7e-032
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2 / +1
Query: 392 WIEILRVDNLVITGKGKLDGQGPAVWS 472
W+ VD+L + G G+LDGQG + W+
Sbjct: 469 WLNFNYVDHLTVEGMGRLDGQGASWWN 549
Score = 35.0 bits (70), Expect(4) = 7e-032
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2 / +1
Query: 476 NSCVKKYDCKILPNSLVMDFVNNGEVSGITLLNSKFFHM 592
NS KY C P +L+ NN V IT +NSK FH+
Sbjct: 547 NSECTKYVCHGGPTTLLFSNANNTVVRQITSINSKHFHI 663
>gb|DR057265.1|DR057265 RTNIT1_4_E07.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_4_E07_A029 5', mRNA sequence
Length = 650
Score = 120 bits (256), Expect(3) = 9e-032
Identities = 50/98 (51%), Positives = 64/98 (65%)
Frame = +2 / +2
Query: 620 IKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGH 799
++++ + APGDSPNTDGIH+ S V I N I GDDCISI +S + I+ + CGPGH
Sbjct: 356 VENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGH 535
Query: 800 GISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAY 913
GISIGSLG V+D+ V +L T NGVRIK +
Sbjct: 536 GISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTW 649
Score = 31.8 bits (63), Expect(3) = 9e-032
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2 / +1
Query: 278 FLVGPLNFTGPCKGD 322
+LV P+NF GPCK D
Sbjct: 1 YLVKPINFNGPCKSD 45
Score = 29.5 bits (58), Expect(3) = 9e-032
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2 / +1
Query: 377 KDHGNWIEILRVDNLVITGKGKLDGQGPAVW 469
++ W+ +V L I G G +DG G W
Sbjct: 109 QERNEWLMFSKVQGLTINGGGIIDGTGQKWW 201
>gb|DR050690.1|DR050690 RTBOR1_25_C10.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_C10_A029 3', mRNA sequence
Length = 835
Score = 90.0 bits (190), Expect(3) = 2e-031
Identities = 37/72 (51%), Positives = 46/72 (63%)
Frame = +2 / +2
Query: 701 ITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLK 880
I N I GDDC+SI G+S + I + CGPGHGISIGSLG E V+D+ V +L
Sbjct: 5 IQNCTIATGDDCVSIVTGSSDIQINKLVCGPGHGISIGSLGSGNSEDTVSDVIVNGASLT 184
Query: 881 KTANGVRIKAYE 916
T NGVRIK ++
Sbjct: 185 ATQNGVRIKTWQ 220
Score = 57.4 bits (119), Expect(3) = 2e-031
Identities = 21/47 (44%), Positives = 34/47 (72%)
Frame = +2 / +2
Query: 1034 NGASKVTVKDVTFKNITGTSSTPEAVNLLCSAKIPCTGVTMDDVNIK 1174
N +S V V +VT+ +ITGTS+T EA+ L CS +PCT + M+ ++++
Sbjct: 356 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISLR 496
Score = 27.6 bits (54), Expect(3) = 2e-031
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2 / +2
Query: 938 ASKIHYENIKMEDSGYPIIIDMKYC 1012
A I +++++M + PIIID YC
Sbjct: 236 AQGIIFQHVRMTNVANPIIIDQYYC 310
>gb|CO172772.1|CO172772 NDL1_31_G01.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_31_G01_A029 5', mRNA sequence
Length = 695
Score = 129 bits (276), Expect(2) = 5e-031
Identities = 54/146 (36%), Positives = 87/146 (59%)
Frame = +2 / +1
Query: 488 KKYDCKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTD 667
+ + C +P +LV++ +N + +T + H+ + + + ++++ + APGDSPNTD
Sbjct: 232 RSHICPSVPTALVVNSSSNVHLKNLTFHVNPKIHVEINESTYVEVENLKIVAPGDSPNTD 411
Query: 668 GIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDV 847
GIH+ DS V I N I GD C+SIG +S + I + C PG GISIGSLG E V
Sbjct: 412 GIHVYDSQHVVIQNCKIATGDYCVSIGTESSSIQINKLVCEPGQGISIGSLGSGNSEDTV 591
Query: 848 TDINVKDCTLKKTANGVRIKAYEDAA 925
+D+ V +L + NGVR++ ++ +A
Sbjct: 592 SDVIVNGASLTASQNGVRVETWQSSA 669
Score = 29.9 bits (59), Expect(2) = 5e-031
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2 / +1
Query: 275 DFLVGPLNFTGPCKGDVTIQVNGNLLAT 358
++ V P+NFTGPC I V + T
Sbjct: 34 NYSVKPINFTGPCNSVKPINVTAQISGT 117
>gb|CO196845.1|CO196845 GEO1_2_A06.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_2_A06_A029 3', mRNA sequence
Length = 691
Score = 127 bits (271), Expect(2) = 8e-031
Identities = 55/139 (39%), Positives = 81/139 (58%)
Frame = +2 / -2
Query: 500 CKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHM 679
C +P + V+ +N + + +S H+ + + ++++ + APGDSPNTDGIH+
Sbjct: 591 CLNIPTAFVVYSSSNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHI 412
Query: 680 GDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDIN 859
S V I N I GDDCISI +S + I+ + CGPGHGISIGSLG V+D+
Sbjct: 411 YASQHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVF 232
Query: 860 VKDCTLKKTANGVRIKAYE 916
V +L T NGVRI+ ++
Sbjct: 231 VNGASLNGTQNGVRIRTWQ 175
Score = 28.1 bits (55), Expect(2) = 8e-031
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2 / -2
Query: 938 ASKIHYENIKMEDSGYPIIIDMKYC 1012
A +I ++++ M + PIIID YC
Sbjct: 159 AQRIMFQHVNMINVSNPIIIDQYYC 85
>gb|CF665534.1|CF665534 RTCNT1_16_D01.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_D01_A029 5', mRNA sequence
Length = 441
Score = 127 bits (271), Expect(2) = 1e-030
Identities = 52/110 (47%), Positives = 71/110 (64%)
Frame = +2 / +3
Query: 587 HMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCISIGPGTSKV 766
H+ + + + ++++ + APGDSPNTDGIH+ S V I N I GDDC+SI G+S +
Sbjct: 3 HVEIAQSTYVQVENLQIVAPGDSPNTDGIHVYASQHVVIQNCTIATGDDCVSIVTGSSGI 182
Query: 767 NITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYE 916
I + CGPGHGISIGSLG E V+D+ V +L T NGVRIK ++
Sbjct: 183 QINKLVCGPGHGISIGSLGSGDSEDTVSDVIVNGASLTATQNGVRIKTWQ 332
Score = 27.6 bits (54), Expect(2) = 1e-030
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2 / +3
Query: 938 ASKIHYENIKMEDSGYPIIIDMKYC 1012
A I +++++M + PIIID YC
Sbjct: 348 AQGIIFQHVRMTNVANPIIIDQYYC 422
>gb|BX250521.1|BX250521 BX250521 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP038A08 similar to POLYGALACTURONASE
PRECURSOR, mRNA sequence
Length = 662
Score = 116 bits (248), Expect(3) = 1e-030
Identities = 50/129 (38%), Positives = 75/129 (58%)
Frame = +2 / +2
Query: 500 CKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHM 679
C +P + ++ +N + + +S H+ + + ++++ + APGDSPNTDGIH+
Sbjct: 275 CLSVPTAFMVYSSSNVHLRDLKFRDSPKIHVEIAMSTHVQVENLEIVAPGDSPNTDGIHI 454
Query: 680 GDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDIN 859
S V I N I GDDCISI +S + I+ + CGPGHGISIGSLG+ E V+D+
Sbjct: 455 YASQHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGQADSEDTVSDVF 634
Query: 860 VKDCTLKKT 886
V +L T
Sbjct: 635 VNGASLNGT 661
Score = 29.5 bits (58), Expect(3) = 1e-030
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2 / +2
Query: 377 KDHGNWIEILRVDNLVITGKGKLDGQGPAVW 469
++ W+ +V L I G G +DG G W
Sbjct: 149 QERNEWLMFSKVQGLTINGGGIIDGTGQKWW 241
Score = 26.3 bits (51), Expect(3) = 1e-030
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2 / +2
Query: 278 FLVGPLNFTGPCK 316
+LV P+ F GPCK
Sbjct: 41 YLVKPITFNGPCK 79
>gb|DR682452.1|DR682452 EST1072527 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA992, mRNA sequence
Length = 841
Score = 127 bits (273), Expect = 1e-028
Identities = 54/146 (36%), Positives = 86/146 (58%)
Frame = +2 / -2
Query: 488 KKYDCKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTD 667
+ + C +P +LV++ +N + +T + H+ + + + ++++ + APGDSPNTD
Sbjct: 795 RNHICPSVPTALVVNSSSNVHLKNLTFHVNPKIHVEINQSTYVEVENLKIVAPGDSPNTD 616
Query: 668 GIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDV 847
GI + DS V I N I GDDC+SIG +S + I + C PG GISIGSLG E V
Sbjct: 615 GIRVYDSQHVVIQNCTIATGDDCVSIGTESSTIQINKLVCEPGQGISIGSLGSGNSEDTV 436
Query: 848 TDINVKDCTLKKTANGVRIKAYEDAA 925
+D+ V +L + NGVR++ + +A
Sbjct: 435 SDVIVNGASLTASQNGVRVQTGQSSA 358
>gb|BQ695692.1|BQ695692 NXPV_031_E12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_031_E12 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 522
Score = 122 bits (262), Expect(2) = 8e-028
Identities = 53/126 (42%), Positives = 75/126 (59%)
Frame = +2 / +2
Query: 539 NNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVI 718
+N + + +S H+ + + ++++ + APGDSPNTDGIH+ S V I N I
Sbjct: 2 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 181
Query: 719 GVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGV 898
GDDCISI +S + I+ + CGPGHGISIGSLG V+D+ V +L T NGV
Sbjct: 182 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGV 361
Query: 899 RIKAYE 916
RIK ++
Sbjct: 362 RIKTWQ 379
Score = 22.1 bits (42), Expect(2) = 8e-028
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2 / +2
Query: 938 ASKIHYENIKMEDSGYPIIIDMKYC 1012
A +I +++ M PIII YC
Sbjct: 395 AQRIMXQHVNMIXXSNPIIIXXIYC 469
>gb|BI202850.1|BI202850 NXPV_091_D07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_091_D07 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 537
Score = 124 bits (266), Expect = 1e-027
Identities = 53/142 (37%), Positives = 83/142 (58%)
Frame = +2 / +3
Query: 500 CKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHM 679
C +P +LV++ +N + +T + H+ + + + ++++ + APGDSPNTDGI +
Sbjct: 54 CPSVPTALVVNSSSNVRLKNLTFHVNPKIHVEINQSTYVEVENLKIVAPGDSPNTDGIRV 233
Query: 680 GDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDIN 859
DS V I N I GDDC+SIG +S + I + C PG GISIGSLG E V+D+
Sbjct: 234 YDSQHVVIQNCTIATGDDCVSIGTESSTIQINKLVCEPGQGISIGSLGSGNSEDTVSDVI 413
Query: 860 VKDCTLKKTANGVRIKAYEDAA 925
+L + NGVR++ + +A
Sbjct: 414 XXGASLTASQNGVRVQTGQSSA 479
>gb|DR099658.1|DR099658 STRR1_57_E02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_57_E02_A033 3', mRNA sequence
Length = 768
Score = 123 bits (263), Expect = 3e-027
Identities = 51/122 (41%), Positives = 75/122 (61%)
Frame = +2 / +2
Query: 560 ITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCI 739
+T S H+ + + + ++++ + APGDSPNTDGIH+ DS V I N I GDDC+
Sbjct: 5 LTFHVSPKIHVEINQSTYVEVENLKIVAPGDSPNTDGIHVYDSQHVVIQNCTIATGDDCV 184
Query: 740 SIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYED 919
SIG +S + I + C PG GISIGSLG E V+D+ V +L + NGVR++ ++
Sbjct: 185 SIGTESSSIQINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVETWQS 364
Query: 920 AA 925
+A
Sbjct: 365 SA 370
>gb|BG673824.1|BG673824 NXPV_075_E12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_075_E12 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 471
Score = 122 bits (262), Expect = 5e-027
Identities = 53/126 (42%), Positives = 75/126 (59%)
Frame = +2 / +2
Query: 539 NNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVI 718
+N + + +S H+ + + ++++ + APGDSPNTDGIH+ S V I N I
Sbjct: 2 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 181
Query: 719 GVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGV 898
GDDCISI +S + I+ + CGPGHGISIGSLG V+D+ V +L T NGV
Sbjct: 182 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGV 361
Query: 899 RIKAYE 916
RIK ++
Sbjct: 362 RIKTWQ 379
>gb|BI397545.1|BI397545 NXPV_100_F08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_100_F08 5' similar to Arabidopsis
thaliana sequence At1g80170 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 122 bits (262), Expect = 5e-027
Identities = 53/126 (42%), Positives = 75/126 (59%)
Frame = +2 / +2
Query: 539 NNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVI 718
+N + + +S H+ + + ++++ + APGDSPNTDGIH+ S V I N I
Sbjct: 2 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 181
Query: 719 GVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGV 898
GDDCISI +S + I+ + CGPGHGISIGSLG V+D+ V +L T NGV
Sbjct: 182 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGV 361
Query: 899 RIKAYE 916
RIK ++
Sbjct: 362 RIKTWQ 379
>gb|BQ695682.1|BQ695682 NXPV_031_D11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_031_D11 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 523
Score = 122 bits (262), Expect = 5e-027
Identities = 53/126 (42%), Positives = 75/126 (59%)
Frame = +2 / +2
Query: 539 NNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVI 718
+N + + +S H+ + + ++++ + APGDSPNTDGIH+ S V I N I
Sbjct: 2 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 181
Query: 719 GVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGV 898
GDDCISI +S + I+ + CGPGHGISIGSLG V+D+ V +L T NGV
Sbjct: 182 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGV 361
Query: 899 RIKAYE 916
RIK ++
Sbjct: 362 RIKTWQ 379
>gb|DR099702.1|DR099702 STRR1_57_E02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_57_E02_A033 5', mRNA sequence
Length = 546
Score = 122 bits (262), Expect = 5e-027
Identities = 49/113 (43%), Positives = 72/113 (63%)
Frame = +2 / +2
Query: 587 HMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCISIGPGTSKV 766
H+ + + + ++++ + APGDSPNTDGIH+ DS V I N I GDDC+SIG +S +
Sbjct: 5 HVEINQSTYVEVENLKIVAPGDSPNTDGIHVYDSQHVVIQNCTIATGDDCVSIGTESSSI 184
Query: 767 NITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYEDAA 925
I + C PG GISIGSLG E V+D+ V +L + NGVR++ ++ +A
Sbjct: 185 QINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVETWQSSA 343
>gb|DR057194.1|DR057194 RTNIT1_4_E07.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_4_E07_A029 3', mRNA sequence
Length = 504
Score = 122 bits (261), Expect = 7e-027
Identities = 51/110 (46%), Positives = 69/110 (62%)
Frame = +2 / -2
Query: 587 HMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCISIGPGTSKV 766
H+ + + ++++ + APGDSPNTDGIH+ S V I N I GDDCISI +S +
Sbjct: 497 HIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDI 318
Query: 767 NITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYE 916
I+ + CGPGHGISIGSLG V+D+ V +L T NGVRIK ++
Sbjct: 317 EISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTWQ 168
>gb|DR097874.1|DR097874 STRR1_37_D04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_37_D04_A033 5', mRNA sequence
Length = 695
Score = 119 bits (255), Expect = 4e-026
Identities = 53/138 (38%), Positives = 78/138 (56%)
Frame = +2 / +3
Query: 512 PNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSS 691
PN F N + +T + H+ + + + ++++ + APGDSPNTDGI + DS
Sbjct: 21 PNRTCGKF*LNVHLKNLTFHVNPKIHVEINQSTYVEVENLKIVAPGDSPNTDGIRVYDSQ 200
Query: 692 GVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDC 871
V I N I GDDC+SIG +S + I + C PG GISIGSLG E V+D+ V
Sbjct: 201 HVVIQNCTIATGDDCVSIGTESSTIQINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGA 380
Query: 872 TLKKTANGVRIKAYEDAA 925
+L + NGVR++ + +A
Sbjct: 381 SLTASQNGVRVQTGQSSA 434
>gb|DR092421.1|DR092421 STRR1_1_G02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_G02_A033 3', mRNA sequence
Length = 860
Score = 116 bits (248), Expect = 4e-025
Identities = 48/113 (42%), Positives = 70/113 (61%)
Frame = +2 / +2
Query: 587 HMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCISIGPGTSKV 766
H+ + + + ++++ + APGDSPNTDGI + DS V I N I GDDC+SIG +S +
Sbjct: 56 HVEINQSTYVEVENLKIVAPGDSPNTDGIRVYDSQHVVIQNCTIATGDDCVSIGTESSTI 235
Query: 767 NITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYEDAA 925
I + C PG GISIGSLG E V+D+ V +L + NGVR++ + +A
Sbjct: 236 QINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVQTGQSSA 394
>gb|BQ695778.1|BQ695778 NXPV_032_E11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_032_E11 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 423
Score = 116 bits (247), Expect = 6e-025
Identities = 51/123 (41%), Positives = 70/123 (56%)
Frame = +2 / +2
Query: 539 NNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVI 718
+N + + +S H+ + + ++++ + APGDSPNTDGIH+ S V I N I
Sbjct: 2 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 181
Query: 719 GVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGV 898
GDDCISI +S + I+ + CGPGHGISIGSLG V+D+ V T N V
Sbjct: 182 ATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSXXSNDTVSDVFVNGAXXNGTQNXV 361
Query: 899 RIK 907
RIK
Sbjct: 362 RIK 370
>gb|CO168808.1|CO168808 NDL1_2_D11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_2_D11_A029 5', mRNA sequence
Length = 728
Score = 102 bits (218), Expect(3) = 2e-024
Identities = 43/90 (47%), Positives = 56/90 (62%)
Frame = +2 / +3
Query: 656 PNTDGIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKD 835
PNTDGIH+ DS V I N I GDDC+SIG +S + I + C PG GISIGSLG
Sbjct: 291 PNTDGIHVYDSQHVVIQNCTIATGDDCVSIGTESSTIQINKLVCEPGQGISIGSLGSGNS 470
Query: 836 EKDVTDINVKDCTLKKTANGVRIKAYEDAA 925
E V+D+ V +L + NGVR++ + +A
Sbjct: 471 EDTVSDVIVNGASLTASQNGVRVETGQSSA 560
Score = 31.8 bits (63), Expect(3) = 2e-024
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2 / +2
Query: 275 DFLVGPLNFTGPCKGDVTIQVNGNLLATTD 364
++ V P+NFTGPC I ++G + D
Sbjct: 74 NYSVKPINFTGPCNSVKHINISGTIFFRPD 163
Score = 22.6 bits (43), Expect(3) = 2e-024
Identities = 6/19 (31%), Positives = 10/19 (52%)
Frame = +2 / +2
Query: 218 AWASACGGTGKQTILIPKG 274
+W +AC + L+P G
Sbjct: 14 SWNAACNSSSDSVFLVPHG 70
>gb|CO370165.1|CO370165 RTK1_65_H06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_65_H06_A029 5', mRNA sequence
Length = 728
Score = 63.4 bits (132), Expect(3) = 1e-023
Identities = 26/55 (47%), Positives = 36/55 (65%)
Frame = +2 / -1
Query: 752 GTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYE 916
G+S + I + CGPGHGIS+GSLG E V+++ V +L T NGVRIK ++
Sbjct: 725 GSSDIQINKLVCGPGHGISMGSLGSGDLEDTVSEVIVNGASLTATQNGVRIKTWQ 561
Score = 57.4 bits (119), Expect(3) = 1e-023
Identities = 21/47 (44%), Positives = 34/47 (72%)
Frame = +2 / -1
Query: 1034 NGASKVTVKDVTFKNITGTSSTPEAVNLLCSAKIPCTGVTMDDVNIK 1174
N +S V V +VT+ +ITGTS+T EA+ L CS +PCT + M+ ++++
Sbjct: 425 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISLR 285
Score = 27.6 bits (54), Expect(3) = 1e-023
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2 / -1
Query: 938 ASKIHYENIKMEDSGYPIIIDMKYC 1012
A I +++++M + PIIID YC
Sbjct: 545 AQGIIFQHVRMTNVANPIIIDQYYC 471
>gb|DR090030.1|DR090030 RTAL1_12_G03.b1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_12_G03_A029 3', mRNA sequence
Length = 672
Score = 58.8 bits (122), Expect(3) = 9e-023
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +2 / -3
Query: 1034 NGASKVTVKDVTFKNITGTSSTPEAVNLLCSAKIPCTGVTMDDVNI 1171
N +S V V +VT+ +ITGTS+T EA+ L CS +PCT + M+ +++
Sbjct: 403 NDSSAVLVHNVTYTDITGTSATKEAIKLACSGSVPCTEIVMEGISL 266
Score = 58.8 bits (122), Expect(3) = 9e-023
Identities = 24/44 (54%), Positives = 29/44 (65%)
Frame = +2 / -3
Query: 785 CGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYE 916
CGPGHGISIGSLG V+D+ V +L T NGVRIK ++
Sbjct: 670 CGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTWQ 539
Score = 28.1 bits (55), Expect(3) = 9e-023
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2 / -3
Query: 938 ASKIHYENIKMEDSGYPIIIDMKYC 1012
A +I ++++ M + PIIID YC
Sbjct: 523 AQRIMFQHVNMINVSNPIIIDQYYC 449
>gb|DR119823.1|DR119823 RTMG1_25_F06.g2_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_25_F06_A029 5', mRNA sequence
Length = 589
Score = 58.8 bits (122), Expect(3) = 9e-023
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +2 / +3
Query: 1034 NGASKVTVKDVTFKNITGTSSTPEAVNLLCSAKIPCTGVTMDDVNI 1171
N +S V V +VT+ +ITGTS+T EA+ L CS +PCT + M+ +++
Sbjct: 270 NDSSAVLVHNVTYTDITGTSATKEAIKLACSGSVPCTEIVMEGISL 407
Score = 58.8 bits (122), Expect(3) = 9e-023
Identities = 24/44 (54%), Positives = 29/44 (65%)
Frame = +2 / +3
Query: 785 CGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYE 916
CGPGHGISIGSLG V+D+ V +L T NGVRIK ++
Sbjct: 3 CGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTWQ 134
Score = 28.1 bits (55), Expect(3) = 9e-023
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2 / +3
Query: 938 ASKIHYENIKMEDSGYPIIIDMKYC 1012
A +I ++++ M + PIIID YC
Sbjct: 150 AQRIMFQHVNMINVSNPIIIDQYYC 224
>gb|BI076998.1|BI076998 NXPV_085_G09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_085_G09 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 373
Score = 106 bits (227), Expect = 3e-022
Identities = 48/123 (39%), Positives = 67/123 (54%)
Frame = +2 / +2
Query: 539 NNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVI 718
+N + + +S H+ + + ++++ + APGDSPNTDGIH+ S V I N I
Sbjct: 2 SNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTI 181
Query: 719 GVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGV 898
GDDCISI +S + I+ + CGPGHGIS LG V + V +L T N V
Sbjct: 182 ATGDDCISIVTQSSDIEISKLVCGPGHGISXXXLGSGDSNDTVXXVFVXGASLNXTQNXV 361
Query: 899 RIK 907
RIK
Sbjct: 362 RIK 370
>gb|DT637803.1|DT637803 EST1152734 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH769 3' end, mRNA sequence
Length = 691
Score = 71.6 bits (150), Expect(3) = 4e-022
Identities = 25/57 (43%), Positives = 37/57 (64%)
Frame = +2 / +1
Query: 152 FDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGPLNFTGPCKGD 322
F++ + GA +G TD+ KA AW +AC T + IP+G+FL+GP++F GPC D
Sbjct: 220 FNVQQYGAKADGITDNRKAFLAAWVAACSSTHTSVVYIPEGNFLLGPVSFEGPCNND 390
Score = 36.8 bits (74), Expect(3) = 4e-022
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2 / +1
Query: 392 WIEILRVDNLVITGKGKLDGQGPAVWS 472
W+ VD+L + G G+LDGQG + W+
Sbjct: 469 WLNFNYVDHLTVEGMGRLDGQGASWWN 549
Score = 35.0 bits (70), Expect(3) = 4e-022
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2 / +1
Query: 476 NSCVKKYDCKILPNSLVMDFVNNGEVSGITLLNSKFFHM 592
NS KY C P +L+ NN V IT +NSK FH+
Sbjct: 547 NSECTKYVCHGGPTTLLFSNANNTVVRQITSINSKHFHI 663
>gb|CF669210.1|CF669210 RTCNT1_41_H08.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_41_H08_A029 3', mRNA sequence
Length = 660
Score = 53.8 bits (111), Expect(4) = 8e-021
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +2 / -2
Query: 191 TDSTKAVQEAWASACGGTGKQTILIPKGDFLVGPLNFTGPCKGDVTIQVNGNLLATTD 364
+D +A + AW AC I+ +LV P+ F+GPCK VT+QV+G ++A D
Sbjct: 611 SDVFQAFKNAWRKACSSARAVFIVPHGKRYLVKPIKFSGPCKSAVTMQVSGTIIAPAD 438
Score = 48.7 bits (100), Expect(4) = 8e-021
Identities = 19/31 (61%), Positives = 22/31 (70%)
Frame = +2 / -3
Query: 629 VNVTAPGDSPNTDGIHMGDSSGVTITNTVIG 721
+ V APG SPNTDGIH+ S V I NT+IG
Sbjct: 163 LKVLAPGHSPNTDGIHLSASKDVVIRNTIIG 71
Score = 32.2 bits (64), Expect(4) = 8e-021
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2 / -2
Query: 392 WIEILRVDNLVITGKGKLDGQGPAVWSKNSCVKK 493
W+ VD+L + G G G G W+++ +KK
Sbjct: 404 WLRFKEVDDLTVEGGGTFYGSGEQWWAESCKIKK 303
Score = 27.6 bits (54), Expect(4) = 8e-021
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2 / -1
Query: 725 GDDCISIGPGTSKVNITGVTCG 790
GDDCISI + + +TCG
Sbjct: 66 GDDCISIVSDSFNICTENITCG 1
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 702,841,278
Number of Sequences: 355925
Number of extensions: 10430858
Number of successful extensions: 59544
Number of sequences better than 1.0e-020: 43
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 24368254110
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)