TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2623051.2.1
(991 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR690801.1|DR690801 EST1080887 Normalized pine embryo li... 138 2e-049
gb|CF669563.1|CF669563 RTCNT1_44_B08.g1_A029 Root control P... 138 2e-049
gb|DT634334.1|DT634334 EST1149265 Normalized pine embryo li... 100 4e-045
gb|DR688043.1|DR688043 EST1078126 Normalized pine embryo li... 102 4e-045
gb|DR695084.1|DR695084 EST1085177 Normalized pine embryo li... 110 2e-040
gb|BQ196954.1|BQ196954 NXLV107_E07_F NXLV (Nsf Xylem Late w... 138 7e-040
gb|DR093167.1|DR093167 STRR1_6_B05.g1_A033 Stem Response Re... 120 2e-039
gb|DT638907.1|DT638907 EST1153838 Normalized pine embryo li... 105 8e-039
gb|CF478531.1|CF478531 RTWW3_20_C08.g1_A022 Well-watered lo... 113 9e-037
gb|CO362135.1|CO362135 RTK1_1_B06.g1_A029 Roots minus potas... 113 9e-037
gb|CO363289.1|CO363289 RTK1_8_G01.g1_A029 Roots minus potas... 113 9e-037
gb|CO362128.1|CO362128 RTK1_1_A06.g1_A029 Roots minus potas... 113 9e-037
gb|DR690657.1|DR690657 EST1080743 Normalized pine embryo li... 113 9e-037
gb|DT637802.1|DT637802 EST1152733 Normalized pine embryo li... 93 6e-036
gb|CO363207.1|CO363207 RTK1_8_G01.b1_A029 Roots minus potas... 109 2e-035
gb|DR692891.1|DR692891 EST1082979 Normalized pine embryo li... 91 2e-035
gb|AI725192.1|AI725192 1091 PtIFG2 Pinus taeda cDNA clone 9... 84 2e-033
gb|DR080903.1|DR080903 RTFEPL1_26_B10.b1_A029 Roots plus ad... 129 3e-029
gb|CV036049.1|CV036049 RTNACL1_44_G04.b1_A029 Roots plus ad... 123 2e-027
dbj|BD267356.1| Compositions isolated from plant cells and ... 75 1e-026
gb|CV036122.1|CV036122 RTNACL1_44_G04.g1_A029 Roots plus ad... 120 2e-026
gb|DR049176.1|DR049176 RTBOR1_14_C08.b1_A029 Roots plus add... 120 2e-026
gb|DR051298.1|DR051298 RTBOR1_29_C04.b1_A029 Roots plus add... 120 2e-026
gb|DR056439.1|DR056439 RTCA1_30_G02.b1_A029 Roots minus cal... 62 2e-021
dbj|BD266980.1| Compositions isolated from plant cells and ... 63 6e-021
>gb|DR690801.1|DR690801 EST1080887 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACZ47 3' end, mRNA sequence
Length = 830
Score = 138 bits (295), Expect(2) = 2e-049
Identities = 56/76 (73%), Positives = 68/76 (89%)
Frame = -2 / +1
Query: 684 IDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFL 505
I V++IITDYCMPGMTGYDLL RVK SS++ DIPVVIMSSENV +RISRC+ +GAEEF L
Sbjct: 550 IQVNMIITDYCMPGMTGYDLLRRVKESSAVKDIPVVIMSSENVESRISRCMSEGAEEFLL 729
Query: 504 KPVKPADMKKLKSHLL 457
KPV+ +D+KKL+SH+L
Sbjct: 730 KPVQLSDVKKLRSHIL 777
Score = 99.6 bits (211), Expect(2) = 4e-021
Identities = 45/71 (63%), Positives = 56/71 (78%)
Frame = +2 / -1
Query: 467 DLSFFMSAGFTGFRKNSSAPSCKHLLIRAGTFSDDMITTGMSVSDEDPFTRVSRSYPVMP 646
DLSFF S TGF KNSSAPS HLLIR TFS+D+ITTGMS++ +D T +S+S PV+P
Sbjct: 767 DLSFFTSDNCTGFNKNSSAPSDIHLLIRDSTFSEDIITTGMSLTADDSLTLLSKS*PVIP 588
Query: 647 GMQ*SVMMRLT 679
G+Q*SV++ LT
Sbjct: 587 GIQ*SVIIILT 555
Score = 78.5 bits (165), Expect(2) = 2e-049
Identities = 34/47 (72%), Positives = 39/47 (82%)
Frame = -2 / +1
Query: 897 SRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
S HVLAVDDS++DRKLIE LLK SSY+VTTVDS KAL+ LGL D+
Sbjct: 385 SELHVLAVDDSVLDRKLIEKLLKISSYRVTTVDSVRKALQFLGLEDD 525
Score = 22.1 bits (42), Expect(2) = 4e-021
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1 / -3
Query: 799 IHRGHLVRRALEQHLDELPVDDAVVHRQDMEPR 897
I+ G + R + ++ + + VVH QDM+ R
Sbjct: 483 INCGDSI*RDFQ*FFNQFSIQNTVVHCQDMKLR 385
>gb|CF669563.1|CF669563 RTCNT1_44_B08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_44_B08_A029 5', mRNA sequence
Length = 774
Score = 138 bits (295), Expect(2) = 2e-049
Identities = 56/76 (73%), Positives = 68/76 (89%)
Frame = -2 / +2
Query: 684 IDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFL 505
I V++IITDYCMPGMTGYDLL RVK SS++ DIPVVIMSSENV +RISRC+ +GAEEF L
Sbjct: 476 IQVNMIITDYCMPGMTGYDLLRRVKESSAVKDIPVVIMSSENVESRISRCMSEGAEEFLL 655
Query: 504 KPVKPADMKKLKSHLL 457
KPV+ +D+KKL+SH+L
Sbjct: 656 KPVQLSDVKKLRSHIL 703
Score = 99.6 bits (211), Expect(2) = 4e-021
Identities = 45/71 (63%), Positives = 56/71 (78%)
Frame = +2 / -1
Query: 467 DLSFFMSAGFTGFRKNSSAPSCKHLLIRAGTFSDDMITTGMSVSDEDPFTRVSRSYPVMP 646
DLSFF S TGF KNSSAPS HLLIR TFS+D+ITTGMS++ +D T +S+S PV+P
Sbjct: 693 DLSFFTSDNCTGFNKNSSAPSDIHLLIRDSTFSEDIITTGMSLTADDSLTLLSKS*PVIP 514
Query: 647 GMQ*SVMMRLT 679
G+Q*SV++ LT
Sbjct: 513 GIQ*SVIIILT 481
Score = 78.5 bits (165), Expect(2) = 2e-049
Identities = 34/47 (72%), Positives = 39/47 (82%)
Frame = -2 / +2
Query: 897 SRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
S HVLAVDDS++DRKLIE LLK SSY+VTTVDS KAL+ LGL D+
Sbjct: 311 SELHVLAVDDSVLDRKLIEKLLKISSYRVTTVDSVRKALQFLGLEDD 451
Score = 22.1 bits (42), Expect(2) = 4e-021
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1 / -3
Query: 799 IHRGHLVRRALEQHLDELPVDDAVVHRQDMEPR 897
I+ G + R + ++ + + VVH QDM+ R
Sbjct: 409 INCGDSI*RDFQ*FFNQFSIQNTVVHCQDMKLR 311
>gb|DT634334.1|DT634334 EST1149265 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG483 3' end, mRNA sequence
Length = 834
Score = 100 bits (212), Expect(3) = 4e-045
Identities = 40/59 (67%), Positives = 49/59 (83%)
Frame = -2 / +3
Query: 684 IDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFF 508
I V++IITDYCMPGMTGYDLL RVK SS++ DIPVVIMSSENV +RIS C+ + + F+
Sbjct: 558 IQVNMIITDYCMPGMTGYDLLRRVKESSAVKDIPVVIMSSENVESRISMCMSEALKSFY 734
Score = 78.5 bits (165), Expect(3) = 4e-045
Identities = 34/47 (72%), Positives = 39/47 (82%)
Frame = -2 / +3
Query: 897 SRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
S HVLAVDDS++DRKLIE LLK SSY+VTTVDS KAL+ LGL D+
Sbjct: 393 SELHVLAVDDSVLDRKLIEKLLKISSYRVTTVDSVRKALQFLGLEDD 533
Score = 42.3 bits (86), Expect(3) = 4e-045
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = -2 / +2
Query: 525 GAEEFFLKPVKPADMKKLKSHLL 457
GAEEF LKPV+ +D+KKL+SH+L
Sbjct: 716 GAEEFLLKPVQLSDVKKLRSHIL 784
>gb|DR688043.1|DR688043 EST1078126 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABZ67 3' end, mRNA sequence
Length = 829
Score = 102 bits (218), Expect(3) = 4e-045
Identities = 41/59 (69%), Positives = 50/59 (84%)
Frame = -2 / +1
Query: 684 IDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFF 508
I V++IITDYCMPGMTGYDLL RVK SS++ DIPVVIMSSENV +RISRC+ + + F+
Sbjct: 550 IQVNMIITDYCMPGMTGYDLLRRVKESSAVKDIPVVIMSSENVESRISRCMSEALKSFY 726
Score = 78.5 bits (165), Expect(3) = 4e-045
Identities = 34/47 (72%), Positives = 39/47 (82%)
Frame = -2 / +1
Query: 897 SRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
S HVLAVDDS++DRKLIE LLK SSY+VTTVDS KAL+ LGL D+
Sbjct: 385 SELHVLAVDDSVLDRKLIEKLLKISSYRVTTVDSVRKALQFLGLEDD 525
Score = 39.6 bits (80), Expect(3) = 4e-045
Identities = 15/22 (68%), Positives = 20/22 (90%)
Frame = -2 / +3
Query: 522 AEEFFLKPVKPADMKKLKSHLL 457
AEEF LKPV+ +D+KKL+SH+L
Sbjct: 711 AEEFLLKPVQLSDVKKLRSHIL 776
>gb|DR695084.1|DR695084 EST1085177 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEK27 3' end, mRNA sequence
Length = 826
Score = 110 bits (235), Expect(2) = 2e-040
Identities = 44/66 (66%), Positives = 54/66 (81%)
Frame = -2 / +1
Query: 696 DHQEIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAE 517
DH +DV++I+TDY MPGM+GYDLL RVK SS L +IPVV+MSSENV +R SRCL GAE
Sbjct: 628 DHNAVDVNMIMTDYSMPGMSGYDLLKRVKESSKLKEIPVVVMSSENVSSRKSRCLDGGAE 807
Query: 516 EFFLKP 499
+F +KP
Sbjct: 808 DFIVKP 825
Score = 76.2 bits (160), Expect(2) = 2e-040
Identities = 33/50 (66%), Positives = 39/50 (78%)
Frame = -2 / +1
Query: 906 DAESRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
D S+ HVLAVDDSI DRK+IE +LK+S Y+VTTVDSG ALE LG D+
Sbjct: 481 DCTSQHHVLAVDDSITDRKVIEKILKNSCYKVTTVDSGKSALEFLGSGDD 630
>gb|BQ196954.1|BQ196954 NXLV107_E07_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV107_E07 5' similar to Arabidopsis thaliana
sequence At1g10470 putative response regulator 3 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 787
Score = 138 bits (295), Expect(2) = 7e-040
Identities = 56/76 (73%), Positives = 68/76 (89%)
Frame = -2 / +3
Query: 684 IDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFL 505
I V++IITDYCMPGMTGYDLL RVK SS++ DIPVVIMSSENV +RISRC+ +GAEEF L
Sbjct: 132 IQVNMIITDYCMPGMTGYDLLRRVKESSAVKDIPVVIMSSENVESRISRCMSEGAEEFLL 311
Query: 504 KPVKPADMKKLKSHLL 457
KPV+ +D+KKL+SH+L
Sbjct: 312 KPVQLSDVKKLRSHIL 359
Score = 46.9 bits (96), Expect(2) = 7e-040
Identities = 21/30 (70%), Positives = 24/30 (80%)
Frame = -2 / +3
Query: 846 IEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
IE LLK SSY+VTTVDS KAL+ LGL D+
Sbjct: 18 IEKLLKISSYRVTTVDSVRKALQFLGLEDD 107
>gb|DR093167.1|DR093167 STRR1_6_B05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_6_B05_A033 5', mRNA sequence
Length = 885
Score = 120 bits (256), Expect(2) = 2e-039
Identities = 47/73 (64%), Positives = 61/73 (83%)
Frame = -2 / +2
Query: 678 VSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLKP 499
V++IITDYCMPGMTGYDLL +VK + L +IPVVI+SSENVP RI+ CL +GA++F +KP
Sbjct: 386 VNMIITDYCMPGMTGYDLLKKVKETKCLKEIPVVIISSENVPQRITSCLAEGAKDFIIKP 565
Query: 498 VKPADMKKLKSHL 460
+K AD+ KLK H+
Sbjct: 566 LKLADITKLKGHI 604
Score = 62.9 bits (131), Expect(2) = 2e-039
Identities = 25/43 (58%), Positives = 36/43 (83%)
Frame = -2 / +2
Query: 888 HVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRD 760
HVLAVDD +I+RK+IE LLK++ ++VT+VDS +ALE+LG +
Sbjct: 221 HVLAVDDCLIERKVIEKLLKTNFFKVTSVDSAERALEVLGFHE 349
>gb|DT638907.1|DT638907 EST1153838 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHK82 3' end, mRNA sequence
Length = 826
Score = 105 bits (223), Expect(2) = 8e-039
Identities = 42/62 (67%), Positives = 51/62 (82%)
Frame = -2 / +3
Query: 696 DHQEIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAE 517
DH +DV++I+TDY MPGM+GYDLL RVK SS L +IPVV+MSSENV +R SRCL GAE
Sbjct: 636 DHNAVDVNMIMTDYSMPGMSGYDLLKRVKESSKLNEIPVVVMSSENVSSRKSRCLDGGAE 815
Query: 516 EF 511
+F
Sbjct: 816 DF 821
Score = 76.2 bits (160), Expect(2) = 8e-039
Identities = 33/50 (66%), Positives = 39/50 (78%)
Frame = -2 / +3
Query: 906 DAESRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
D S+ HVLAVDDSI DRK+IE +LK+S Y+VTTVDSG ALE LG D+
Sbjct: 489 DCTSQHHVLAVDDSITDRKVIEKILKNSCYKVTTVDSGKSALEFLGSGDD 638
>gb|CF478531.1|CF478531 RTWW3_20_C08.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_20_C08_A022 5', mRNA sequence
Length = 820
Score = 113 bits (242), Expect(2) = 9e-037
Identities = 45/72 (62%), Positives = 57/72 (79%)
Frame = -2 / +1
Query: 675 SLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLKPV 496
SLIITDYCMP +TGYDLL R+K L +IPV+IMSSENVP RI RCL +GAE+F +KPV
Sbjct: 478 SLIITDYCMPELTGYDLLKRLKEIKGLKEIPVIIMSSENVPQRIQRCLDEGAEDFIVKPV 657
Query: 495 KPADMKKLKSHL 460
+ D+KK+ ++
Sbjct: 658 QRDDIKKITGYI 693
Score = 60.6 bits (126), Expect(2) = 9e-037
Identities = 27/46 (58%), Positives = 33/46 (71%)
Frame = -2 / +1
Query: 888 HVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDNGA 751
HVLAVDD +DR ++E LL+S S +VT VDS KALELLG+ A
Sbjct: 307 HVLAVDDCRVDRMVVERLLRSDSVKVTAVDSAAKALELLGVNKEHA 444
>gb|CO362135.1|CO362135 RTK1_1_B06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_1_B06_A029 5', mRNA sequence
Length = 804
Score = 113 bits (242), Expect(2) = 9e-037
Identities = 45/72 (62%), Positives = 57/72 (79%)
Frame = -2 / +1
Query: 675 SLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLKPV 496
SLIITDYCMP +TGYDLL R+K L +IPV+IMSSENVP RI RCL +GAE+F +KPV
Sbjct: 412 SLIITDYCMPELTGYDLLKRLKEIKGLKEIPVIIMSSENVPQRIQRCLDEGAEDFIVKPV 591
Query: 495 KPADMKKLKSHL 460
+ D+KK+ ++
Sbjct: 592 QRDDIKKITGYI 627
Score = 60.6 bits (126), Expect(2) = 9e-037
Identities = 27/46 (58%), Positives = 33/46 (71%)
Frame = -2 / +1
Query: 888 HVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDNGA 751
HVLAVDD +DR ++E LL+S S +VT VDS KALELLG+ A
Sbjct: 241 HVLAVDDCRVDRMVVERLLRSDSVKVTAVDSAAKALELLGVNKEHA 378
>gb|CO363289.1|CO363289 RTK1_8_G01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_8_G01_A029 5', mRNA sequence
Length = 805
Score = 113 bits (242), Expect(2) = 9e-037
Identities = 45/72 (62%), Positives = 57/72 (79%)
Frame = -2 / -1
Query: 675 SLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLKPV 496
SLIITDYCMP +TGYDLL R+K L +IPV+IMSSENVP RI RCL +GAE+F +KPV
Sbjct: 604 SLIITDYCMPELTGYDLLKRLKEIKGLKEIPVIIMSSENVPQRIQRCLDEGAEDFIVKPV 425
Query: 495 KPADMKKLKSHL 460
+ D+KK+ ++
Sbjct: 424 QRDDIKKITGYI 389
Score = 60.6 bits (126), Expect(2) = 9e-037
Identities = 27/46 (58%), Positives = 33/46 (71%)
Frame = -2 / -1
Query: 888 HVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDNGA 751
HVLAVDD +DR ++E LL+S S +VT VDS KALELLG+ A
Sbjct: 775 HVLAVDDCRVDRMVVERLLRSDSVKVTAVDSAAKALELLGVNKEHA 638
>gb|CO362128.1|CO362128 RTK1_1_A06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_1_A06_A029 5', mRNA sequence
Length = 763
Score = 113 bits (242), Expect(2) = 9e-037
Identities = 45/72 (62%), Positives = 57/72 (79%)
Frame = -2 / +2
Query: 675 SLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLKPV 496
SLIITDYCMP +TGYDLL R+K L +IPV+IMSSENVP RI RCL +GAE+F +KPV
Sbjct: 407 SLIITDYCMPELTGYDLLKRLKEIKGLKEIPVIIMSSENVPQRIQRCLDEGAEDFIVKPV 586
Query: 495 KPADMKKLKSHL 460
+ D+KK+ ++
Sbjct: 587 QRDDIKKITGYI 622
Score = 60.6 bits (126), Expect(2) = 9e-037
Identities = 27/46 (58%), Positives = 33/46 (71%)
Frame = -2 / +2
Query: 888 HVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDNGA 751
HVLAVDD +DR ++E LL+S S +VT VDS KALELLG+ A
Sbjct: 236 HVLAVDDCRVDRMVVERLLRSDSVKVTAVDSAAKALELLGVNKEHA 373
>gb|DR690657.1|DR690657 EST1080743 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACX70 3' end, mRNA sequence
Length = 746
Score = 113 bits (242), Expect(2) = 9e-037
Identities = 45/72 (62%), Positives = 57/72 (79%)
Frame = -2 / +1
Query: 675 SLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLKPV 496
SLIITDYCMP +TGYDLL R+K L +IPV+IMSSENVP RI RCL +GAE+F +KPV
Sbjct: 517 SLIITDYCMPELTGYDLLKRLKEIKGLKEIPVIIMSSENVPQRIQRCLDEGAEDFIVKPV 696
Query: 495 KPADMKKLKSHL 460
+ D+KK+ ++
Sbjct: 697 QRDDIKKITGYI 732
Score = 60.6 bits (126), Expect(2) = 9e-037
Identities = 27/46 (58%), Positives = 33/46 (71%)
Frame = -2 / +1
Query: 888 HVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDNGA 751
HVLAVDD +DR ++E LL+S S +VT VDS KALELLG+ A
Sbjct: 346 HVLAVDDCRVDRMVVERLLRSDSVKVTAVDSAAKALELLGVNKEHA 483
>gb|DT637802.1|DT637802 EST1152733 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH768 3' end, mRNA sequence
Length = 711
Score = 93.2 bits (197), Expect(2) = 6e-036
Identities = 39/48 (81%), Positives = 44/48 (91%)
Frame = -2 / +3
Query: 684 IDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARIS 541
I V++IITDYCMPGMTGYDLL RVK SS++TDIPVVIMSSENV +RIS
Sbjct: 558 IQVNMIITDYCMPGMTGYDLLRRVKESSAVTDIPVVIMSSENVESRIS 701
Score = 78.5 bits (165), Expect(2) = 6e-036
Identities = 34/47 (72%), Positives = 39/47 (82%)
Frame = -2 / +3
Query: 897 SRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
S HVLAVDDS++DRKLIE LLK SSY+VTTVDS KAL+ LGL D+
Sbjct: 393 SELHVLAVDDSVLDRKLIEKLLKISSYRVTTVDSVRKALQFLGLEDD 533
>gb|CO363207.1|CO363207 RTK1_8_G01.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_8_G01_A029 3', mRNA sequence
Length = 730
Score = 109 bits (232), Expect(2) = 2e-035
Identities = 44/66 (66%), Positives = 53/66 (80%)
Frame = -2 / -2
Query: 675 SLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLKPV 496
SLIITDYCMP +TGYDLL R+K L +IPV+IMSSENVP RI RCL +GAE+F +KPV
Sbjct: 198 SLIITDYCMPELTGYDLLKRLKEIKGLKEIPVIIMSSENVPQRIQRCLDEGAEDFIVKPV 19
Query: 495 KPADMK 478
+ D+K
Sbjct: 18 QRDDIK 1
Score = 60.6 bits (126), Expect(2) = 2e-035
Identities = 27/46 (58%), Positives = 33/46 (71%)
Frame = -2 / -2
Query: 888 HVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDNGA 751
HVLAVDD +DR ++E LL+S S +VT VDS KALELLG+ A
Sbjct: 369 HVLAVDDCRVDRMVVERLLRSDSVKVTAVDSAAKALELLGVNKEHA 232
>gb|DR692891.1|DR692891 EST1082979 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADR59 3' end, mRNA sequence
Length = 691
Score = 91.3 bits (193), Expect(2) = 2e-035
Identities = 38/47 (80%), Positives = 43/47 (91%)
Frame = -2 / +1
Query: 684 IDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARI 544
I V++IITDYCMPGMTGYDLL RVK SS++TDIPVVIMSSENV +RI
Sbjct: 550 IQVNMIITDYCMPGMTGYDLLRRVKESSAVTDIPVVIMSSENVESRI 690
Score = 78.5 bits (165), Expect(2) = 2e-035
Identities = 34/47 (72%), Positives = 39/47 (82%)
Frame = -2 / +1
Query: 897 SRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
S HVLAVDDS++DRKLIE LLK SSY+VTTVDS KAL+ LGL D+
Sbjct: 385 SELHVLAVDDSVLDRKLIEKLLKISSYRVTTVDSVRKALQFLGLEDD 525
>gb|AI725192.1|AI725192 1091 PtIFG2 Pinus taeda cDNA clone 9119r, mRNA sequence
Length = 684
Score = 84.5 bits (178), Expect(2) = 2e-033
Identities = 35/43 (81%), Positives = 39/43 (90%)
Frame = -2 / +2
Query: 684 IDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENV 556
I V++IITDYCMPGMTGYDLL RVK SS++ DIPVVIMSSENV
Sbjct: 191 IQVNMIITDYCMPGMTGYDLLRRVKESSAVKDIPVVIMSSENV 319
Score = 78.5 bits (165), Expect(2) = 2e-033
Identities = 34/47 (72%), Positives = 39/47 (82%)
Frame = -2 / +2
Query: 897 SRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
S HVLAVDDS++DRKLIE LLK SSY+VTTVDS KAL+ LGL D+
Sbjct: 26 SELHVLAVDDSVLDRKLIEKLLKISSYRVTTVDSVRKALQFLGLEDD 166
>gb|DR080903.1|DR080903 RTFEPL1_26_B10.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_26_B10_A029 3', mRNA sequence
Length = 586
Score = 129 bits (276), Expect = 3e-029
Identities = 52/69 (75%), Positives = 62/69 (89%)
Frame = -2 / +3
Query: 663 TDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLKPVKPAD 484
TDYCMPGMTGYDLL RVK SS++ DIPVVIMSSENV +RISRC+ +GAEEF LKPV+ +D
Sbjct: 3 TDYCMPGMTGYDLLRRVKESSAVKDIPVVIMSSENVESRISRCMSEGAEEFLLKPVQLSD 182
Query: 483 MKKLKSHLL 457
+KKL+SH+L
Sbjct: 183 VKKLRSHIL 209
>gb|CV036049.1|CV036049 RTNACL1_44_G04.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_44_G04_A029 3', mRNA sequence
Length = 683
Score = 123 bits (264), Expect = 2e-027
Identities = 48/73 (65%), Positives = 61/73 (83%)
Frame = -2 / +3
Query: 678 VSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLKP 499
V +IITDYCMPGMTGYDLL +VK + L +IPVVI+SSENVP RI+ CL +GA++F +KP
Sbjct: 72 VHMIITDYCMPGMTGYDLLKKVKETKCLKEIPVVIISSENVPQRITSCLAEGAKDFIIKP 251
Query: 498 VKPADMKKLKSHL 460
+KPAD+ KLK H+
Sbjct: 252 LKPADITKLKGHI 290
>dbj|BD267356.1| Compositions isolated from plant cells and utilization of the same
in modifying plant cell signal transduction
Length = 1800
Score = 75.3 bits (158), Expect(2) = 1e-026
Identities = 31/46 (67%), Positives = 37/46 (80%)
Frame = -2 / +2
Query: 675 SLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISR 538
S+IITDYCMP MTGYDLL ++K + L +IPVVI+SSENVP I R
Sbjct: 317 SMIITDYCMPEMTGYDLLKKLKETKGLKEIPVVIISSENVPQIIQR 454
Score = 65.2 bits (136), Expect(2) = 1e-026
Identities = 27/41 (65%), Positives = 35/41 (85%)
Frame = -2 / +2
Query: 888 HVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGL 766
HVLAVDD +IDRK+IE LL++ + +VTTVDS +ALE+LGL
Sbjct: 146 HVLAVDDCVIDRKIIERLLETDTVKVTTVDSPTRALEMLGL 268
>gb|CV036122.1|CV036122 RTNACL1_44_G04.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_44_G04_A029 5', mRNA sequence
Length = 685
Score = 120 bits (256), Expect = 2e-026
Identities = 47/73 (64%), Positives = 61/73 (83%)
Frame = -2 / +1
Query: 678 VSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLKP 499
V++IITDYCMPGMTGYDLL +VK + L +IPVVI+SSENVP RI+ CL +GA++F +KP
Sbjct: 55 VNMIITDYCMPGMTGYDLLKKVKETKCLKEIPVVIISSENVPQRITSCLAEGAKDFIIKP 234
Query: 498 VKPADMKKLKSHL 460
+K AD+ KLK H+
Sbjct: 235 LKLADITKLKGHI 273
>gb|DR049176.1|DR049176 RTBOR1_14_C08.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_14_C08_A029 3', mRNA sequence
Length = 665
Score = 120 bits (256), Expect = 2e-026
Identities = 47/73 (64%), Positives = 61/73 (83%)
Frame = -2 / +1
Query: 678 VSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLKP 499
V++IITDYCMPGMTGYDLL +VK + L +IPVVI+SSENVP RI+ CL +GA++F +KP
Sbjct: 55 VNMIITDYCMPGMTGYDLLKKVKETKCLKEIPVVIISSENVPQRITSCLAEGAKDFIIKP 234
Query: 498 VKPADMKKLKSHL 460
+K AD+ KLK H+
Sbjct: 235 LKLADITKLKGHI 273
>gb|DR051298.1|DR051298 RTBOR1_29_C04.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_29_C04_A029 3', mRNA sequence
Length = 616
Score = 120 bits (256), Expect = 2e-026
Identities = 47/73 (64%), Positives = 61/73 (83%)
Frame = -2 / +1
Query: 678 VSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLKP 499
V++IITDYCMPGMTGYDLL +VK + L +IPVVI+SSENVP RI+ CL +GA++F +KP
Sbjct: 1 VNMIITDYCMPGMTGYDLLKKVKETKCLKEIPVVIISSENVPQRITSCLAEGAKDFIIKP 180
Query: 498 VKPADMKKLKSHL 460
+K AD+ KLK H+
Sbjct: 181 LKLADITKLKGHI 219
>gb|DR056439.1|DR056439 RTCA1_30_G02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_30_G02_A029 3', mRNA sequence
Length = 656
Score = 62.0 bits (129), Expect(2) = 2e-021
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = -2 / -1
Query: 675 SLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMS 568
SLIITDYCMP +TGYDLL R+K L +IPV+IMS
Sbjct: 110 SLIITDYCMPELTGYDLLKRLKEIKGLKEIPVIIMS 3
Score = 60.6 bits (126), Expect(2) = 2e-021
Identities = 27/46 (58%), Positives = 33/46 (71%)
Frame = -2 / -1
Query: 888 HVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDNGA 751
HVLAVDD +DR ++E LL+S S +VT VDS KALELLG+ A
Sbjct: 281 HVLAVDDCRVDRMVVERLLRSDSVKVTAVDSAAKALELLGVNKEHA 144
>dbj|BD266980.1| Compositions isolated from plant cells and utilization of the same
in modifying plant cell signal transduction
Length = 534
Score = 62.9 bits (131), Expect(2) = 6e-021
Identities = 25/43 (58%), Positives = 36/43 (83%)
Frame = -2 / +1
Query: 888 HVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRD 760
HVLAVDD +I+RK+IE LLK++ ++VT+VDS +ALE+LG +
Sbjct: 271 HVLAVDDCLIERKVIEKLLKTNFFKVTSVDSAERALEVLGFHE 399
Score = 58.3 bits (121), Expect(2) = 6e-021
Identities = 22/32 (68%), Positives = 27/32 (84%)
Frame = -2 / +1
Query: 678 VSLIITDYCMPGMTGYDLLTRVKGSSSLTDIP 583
V++IITDYCMPGMTGYDLL +VK + L +IP
Sbjct: 436 VNMIITDYCMPGMTGYDLLKKVKETKCLKEIP 531
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 372,805,489
Number of Sequences: 355925
Number of extensions: 4320591
Number of successful extensions: 32902
Number of sequences better than 1.0e-020: 30
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 14783034720
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)