TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2622915.2.1
(584 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR019196.1|DR019196 STRS1_28_A02.g1_A034 Shoot tip pitch... 129 1e-029
gb|DR079131.1|DR079131 RTFEPL1_9_F09.b1_A029 Roots plus add... 129 1e-029
gb|DR079207.1|DR079207 RTFEPL1_9_F09.g1_A029 Roots plus add... 129 1e-029
gb|DR179128.1|DR179128 RTMNUT1_16_D10.b1_A029 Roots minus m... 129 1e-029
gb|DR179202.1|DR179202 RTMNUT1_16_D10.g1_A029 Roots minus m... 129 1e-029
gb|DR681790.1|DR681790 EST1071865 Normalized pine embryo li... 129 1e-029
gb|DR694320.1|DR694320 EST1084412 Normalized pine embryo li... 129 1e-029
dbj|BD273072.1| Materials and methods for the modification ... 129 1e-029
gb|DR120277.1|DR120277 RTMG1_28_D11.g2_A029 Roots minus mag... 121 4e-027
gb|DR684177.1|DR684177 EST1074254 Normalized pine embryo li... 109 2e-023
gb|DR081782.1|DR081782 RTFEPL1_32_F04.b1_A029 Roots plus ad... 101 3e-021
>gb|DR019196.1|DR019196 STRS1_28_A02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_28_A02_A034 5', mRNA sequence
Length = 824
Score = 129 bits (277), Expect = 1e-029
Identities = 47/59 (79%), Positives = 51/59 (86%)
Frame = -3 / +1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWM LRVL+TVEAH GY FPWS S PLYGG+DFHDYHHR+LYTKSGNY+STF YMDW
Sbjct: 616 LWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDW 792
>gb|DR079131.1|DR079131 RTFEPL1_9_F09.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_9_F09_A029 3', mRNA sequence
Length = 812
Score = 129 bits (277), Expect = 1e-029
Identities = 47/59 (79%), Positives = 51/59 (86%)
Frame = -3 / +2
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWM LRVL+TVEAH GY FPWS S PLYGG+DFHDYHHR+LYTKSGNY+STF YMDW
Sbjct: 98 LWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDW 274
>gb|DR079207.1|DR079207 RTFEPL1_9_F09.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_9_F09_A029 5', mRNA sequence
Length = 804
Score = 129 bits (277), Expect = 1e-029
Identities = 47/59 (79%), Positives = 51/59 (86%)
Frame = -3 / +1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWM LRVL+TVEAH GY FPWS S PLYGG+DFHDYHHR+LYTKSGNY+STF YMDW
Sbjct: 325 LWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDW 501
>gb|DR179128.1|DR179128 RTMNUT1_16_D10.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_16_D10_A029 3', mRNA sequence
Length = 786
Score = 129 bits (277), Expect = 1e-029
Identities = 47/59 (79%), Positives = 51/59 (86%)
Frame = -3 / +1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWM LRVL+TVEAH GY FPWS S PLYGG+DFHDYHHR+LYTKSGNY+STF YMDW
Sbjct: 19 LWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDW 195
>gb|DR179202.1|DR179202 RTMNUT1_16_D10.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_16_D10_A029 5', mRNA sequence
Length = 761
Score = 129 bits (277), Expect = 1e-029
Identities = 47/59 (79%), Positives = 51/59 (86%)
Frame = -3 / +3
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWM LRVL+TVEAH GY FPWS S PLYGG+DFHDYHHR+LYTKSGNY+STF YMDW
Sbjct: 327 LWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDW 503
>gb|DR681790.1|DR681790 EST1071865 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA171 3' end, mRNA sequence
Length = 729
Score = 129 bits (277), Expect = 1e-029
Identities = 47/59 (79%), Positives = 51/59 (86%)
Frame = -3 / +2
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWM LRVL+TVEAH GY FPWS S PLYGG+DFHDYHHR+LYTKSGNY+STF YMDW
Sbjct: 332 LWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDW 508
>gb|DR694320.1|DR694320 EST1084412 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEA88 3' end, mRNA sequence
Length = 823
Score = 129 bits (277), Expect = 1e-029
Identities = 47/59 (79%), Positives = 51/59 (86%)
Frame = -3 / +3
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWM LRVL+TVEAH GY FPWS S PLYGG+DFHDYHHR+LYTKSGNY+STF YMDW
Sbjct: 612 LWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDW 788
>dbj|BD273072.1| Materials and methods for the modification of isoprenoid content,
compostition and metabolism
Length = 362
Score = 129 bits (277), Expect = 1e-029
Identities = 47/59 (79%), Positives = 51/59 (86%)
Frame = -3 / +2
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWM LRVL+TVEAH GY FPWS S PLYGG+DFHDYHHR+LYTKSGNY+STF YMDW
Sbjct: 26 LWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDW 202
>gb|DR120277.1|DR120277 RTMG1_28_D11.g2_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_28_D11_A029 5', mRNA sequence
Length = 519
Score = 121 bits (259), Expect = 4e-027
Identities = 45/59 (76%), Positives = 49/59 (83%)
Frame = -3 / +2
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWM LRVL+TVEAH GY FPWS S PLYGG+DF YHHR+LYTKSGNY+STF YMDW
Sbjct: 305 LWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFFFYHHRLLYTKSGNYSSTFTYMDW 481
>gb|DR684177.1|DR684177 EST1074254 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAP73 3' end, mRNA sequence
Length = 820
Score = 109 bits (233), Expect = 2e-023
Identities = 40/51 (78%), Positives = 44/51 (86%)
Frame = -3 / +2
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYA 430
LWM LRVL+TVEAH GY FPWS S PLYGG+DFHDYHHR+LYTKSGNY+
Sbjct: 668 LWMSLRVLETVEAHCGYDFPWSISKLFPLYGGADFHDYHHRLLYTKSGNYS 820
>gb|DR081782.1|DR081782 RTFEPL1_32_F04.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_32_F04_A029 3', mRNA sequence
Length = 705
Score = 101 bits (216), Expect = 3e-021
Identities = 35/44 (79%), Positives = 38/44 (86%)
Frame = -3 / +1
Query: 537 GYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
GY FPWS S PLYGG+DFHDYHHR+LYTKSGNY+STF YMDW
Sbjct: 1 GYDFPWSISKLFPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDW 132
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 299,901,664
Number of Sequences: 355925
Number of extensions: 4191748
Number of successful extensions: 45035
Number of sequences better than 1.0e-020: 11
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7761120510
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)