TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619146.2.1
(636 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO200550.1|CO200550 GEO2_8_C12.b1_A032 Root gravitropism... 139 6e-034
gb|CO361124.1|CO361124 NDL2_2_H09.g1_A029 Needles control 2... 139 6e-034
gb|DR120678.1|DR120678 RTMG1_31_F04.b1_A029 Roots minus mag... 139 6e-034
gb|CO165781.1|CO165781 FLD1_57_B08.b1_A029 Root flooded Pin... 139 6e-034
gb|CO369603.1|CO369603 RTK1_48_F07.b1_A029 Roots minus pota... 139 6e-034
gb|BQ634357.1|BQ634357 NXRV067_H08_F NXRV (Nsf Xylem Root w... 139 6e-034
gb|CF470504.1|CF470504 RTDS1_13_D09.b1_A015 Drought-stresse... 139 6e-034
gb|CO169862.1|CO169862 NDL1_10_D06.b1_A029 Needles control ... 139 6e-034
gb|AA739773.1|AA739773 538 PtIFG2 Pinus taeda cDNA clone 88... 138 5e-032
gb|BE496570.1|BE496570 NXCI_020_G05_F NXCI (Nsf Xylem Compr... 138 5e-032
gb|AI920150.1|AI920150 1680 Pine Lambda Zap Xylem library P... 137 7e-032
gb|CX713945.1|CX713945 RTPQ1_15_G12.b1_A032 Roots treated w... 137 7e-032
gb|CO165491.1|CO165491 FLD1_54_H04.g1_A029 Root flooded Pin... 130 8e-031
gb|CV034557.1|CV034557 RTNACL1_10_A06.b1_A029 Roots plus ad... 130 8e-031
gb|CX648317.1|CX648317 COLD1_27_H06.g1_A029 Root cold Pinus... 130 8e-031
gb|CX648234.1|CX648234 COLD1_27_H06.b1_A029 Root cold Pinus... 130 8e-031
gb|CF672241.1|CF672241 RTCNT1_62_G02.b1_A029 Root control P... 130 8e-031
gb|DR056287.1|DR056287 RTCA1_29_F12.b1_A029 Roots minus cal... 130 8e-031
gb|CO166187.1|CO166187 FLD1_60_A12.b1_A029 Root flooded Pin... 130 8e-031
gb|CV034621.1|CV034621 RTNACL1_10_A06.g1_A029 Roots plus ad... 130 8e-031
gb|DR742450.1|DR742450 RTCU1_4_D01.b1_A029 Roots plus added... 130 8e-031
gb|DR013276.1|DR013276 HEAT1_18_G05.b1_A029 Root at 37 C fo... 130 8e-031
gb|CO368668.1|CO368668 RTK1_42_C01.b1_A029 Roots minus pota... 129 1e-030
gb|CO368744.1|CO368744 RTK1_42_C01.g1_A029 Roots minus pota... 129 1e-030
gb|CO368658.1|CO368658 RTK1_42_B01.b1_A029 Roots minus pota... 132 3e-030
gb|AW698003.1|AW698003 NXNV_079_D09_F Nsf Xylem Normal wood... 125 2e-029
gb|CF476401.1|CF476401 RTWW3_1_A12.b1_A022 Well-watered lob... 125 3e-029
gb|CF393740.1|CF393740 RTDS2_1_A05.b1_A021 Drought-stressed... 128 4e-029
gb|CF477415.1|CF477415 RTWW3_7_G07.g1_A022 Well-watered lob... 119 1e-027
gb|DR387675.1|DR387675 RTHG1_23_H11.b1_A029 Roots plus adde... 86 2e-027
gb|CO361058.1|CO361058 NDL2_2_H09.b1_A029 Needles control 2... 122 2e-027
gb|AW626638.1|AW626638 NXNV067G01 Nsf Xylem Normal wood Ver... 116 2e-025
gb|CF477362.1|CF477362 RTWW3_7_G07.b1_A022 Well-watered lob... 64 4e-022
gb|DR056364.1|DR056364 RTCA1_29_F12.g1_A029 Roots minus cal... 99 2e-021
gb|DR090523.1|DR090523 RTAL1_15_D10.g1_A029 Roots plus adde... 102 2e-021
gb|DR168719.1|DR168719 RTPHOS1_27_H08.b1_A029 Roots minus p... 102 2e-021
>gb|CO200550.1|CO200550 GEO2_8_C12.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_8_C12_A032 3', mRNA sequence
Length = 833
Score = 139 bits (299), Expect(2) = 6e-034
Identities = 53/93 (56%), Positives = 71/93 (76%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE +LD+ G+K+ + + IMQQG AYLP GVC SSMGR
Sbjct: 308 FANQAGLDMLETTLVALQDISLEKILDDNGRKSFCSDIAQIMQQGYAYLPAGVCVSSMGR 487
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ P C+A M NW+F+*
Sbjct: 488 PASYDRAIAWKVLNDEENPHCIAFMFMNWSFV* 586
Score = 24.4 bits (47), Expect(2) = 6e-034
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / +2
Query: 634 DAILCCSLK 608
DAI+CCSLK
Sbjct: 263 DAIMCCSLK 289
>gb|CO361124.1|CO361124 NDL2_2_H09.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_2_H09_A029 5', mRNA sequence
Length = 826
Score = 139 bits (299), Expect(2) = 6e-034
Identities = 53/93 (56%), Positives = 71/93 (76%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE +LD+ G+K+ + + IMQQG AYLP GVC SSMGR
Sbjct: 331 FANQAGLDMLETTLVALQDISLEKILDDNGRKSFCSDIAQIMQQGYAYLPAGVCVSSMGR 510
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ P C+A M NW+F+*
Sbjct: 511 PASYDRAIAWKVLNDEENPHCIAFMFMNWSFV* 609
Score = 24.4 bits (47), Expect(2) = 6e-034
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DAI+CCSLK
Sbjct: 286 DAIMCCSLK 312
>gb|DR120678.1|DR120678 RTMG1_31_F04.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_31_F04_A029 3', mRNA sequence
Length = 782
Score = 139 bits (299), Expect(2) = 6e-034
Identities = 53/93 (56%), Positives = 71/93 (76%)
Frame = -3 / -3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE +LD+ G+K+ + + IMQQG AYLP GVC SSMGR
Sbjct: 519 FANQAGLDMLETTLVALQDISLEKILDDNGRKSFCSDIAQIMQQGYAYLPAGVCVSSMGR 340
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ P C+A M NW+F+*
Sbjct: 339 PASYDRAIAWKVLNDEENPHCIAFMFMNWSFV* 241
Score = 24.4 bits (47), Expect(2) = 6e-034
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / -3
Query: 634 DAILCCSLK 608
DAI+CCSLK
Sbjct: 564 DAIMCCSLK 538
>gb|CO165781.1|CO165781 FLD1_57_B08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_B08_A029 3', mRNA sequence
Length = 757
Score = 139 bits (299), Expect(2) = 6e-034
Identities = 53/93 (56%), Positives = 71/93 (76%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE +LD+ G+K+ + + IMQQG AYLP GVC SSMGR
Sbjct: 322 FANQAGLDMLETTLVALQDISLEKILDDNGRKSFCSDIAQIMQQGYAYLPAGVCVSSMGR 501
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ P C+A M NW+F+*
Sbjct: 502 PASYDRAIAWKVLNDEENPHCIAFMFMNWSFV* 600
Score = 24.4 bits (47), Expect(2) = 6e-034
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DAI+CCSLK
Sbjct: 277 DAIMCCSLK 303
>gb|CO369603.1|CO369603 RTK1_48_F07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_48_F07_A029 3', mRNA sequence
Length = 707
Score = 139 bits (299), Expect(2) = 6e-034
Identities = 53/93 (56%), Positives = 71/93 (76%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE +LD+ G+K+ + + IMQQG AYLP GVC SSMGR
Sbjct: 299 FANQAGLDMLETTLVALQDISLEKILDDNGRKSFCSDIAQIMQQGYAYLPAGVCVSSMGR 478
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ P C+A M NW+F+*
Sbjct: 479 PASYDRAIAWKVLNDEENPHCIAFMFMNWSFV* 577
Score = 24.4 bits (47), Expect(2) = 6e-034
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / +2
Query: 634 DAILCCSLK 608
DAI+CCSLK
Sbjct: 254 DAIMCCSLK 280
>gb|BQ634357.1|BQ634357 NXRV067_H08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV067_H08 5' similar to Arabidopsis thaliana
sequence At1g52150 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 651
Score = 139 bits (299), Expect(2) = 6e-034
Identities = 53/93 (56%), Positives = 71/93 (76%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE +LD+ G+K+ + + IMQQG AYLP GVC SSMGR
Sbjct: 185 FANQAGLDMLETTLVALQDISLEKILDDNGRKSFCSDIAQIMQQGYAYLPAGVCVSSMGR 364
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ P C+A M NW+F+*
Sbjct: 365 PASYDRAIAWKVLNDEENPHCIAFMFMNWSFV* 463
Score = 24.4 bits (47), Expect(2) = 6e-034
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / +2
Query: 634 DAILCCSLK 608
DAI+CCSLK
Sbjct: 140 DAIMCCSLK 166
>gb|CF470504.1|CF470504 RTDS1_13_D09.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_13_D09_A015 3', mRNA sequence
Length = 649
Score = 139 bits (299), Expect(2) = 6e-034
Identities = 53/93 (56%), Positives = 71/93 (76%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE +LD+ G+K+ + + IMQQG AYLP GVC SSMGR
Sbjct: 194 FANQAGLDMLETTLVALQDISLEKILDDNGRKSFCSDIAQIMQQGYAYLPAGVCVSSMGR 373
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ P C+A M NW+F+*
Sbjct: 374 PASYDRAIAWKVLNDEENPHCIAFMFMNWSFV* 472
Score = 24.4 bits (47), Expect(2) = 6e-034
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / +2
Query: 634 DAILCCSLK 608
DAI+CCSLK
Sbjct: 149 DAIMCCSLK 175
>gb|CO169862.1|CO169862 NDL1_10_D06.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_10_D06_A029 3', mRNA sequence
Length = 544
Score = 139 bits (299), Expect(2) = 6e-034
Identities = 53/93 (56%), Positives = 71/93 (76%)
Frame = -3 / +3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE +LD+ G+K+ + + IMQQG AYLP GVC SSMGR
Sbjct: 87 FANQAGLDMLETTLVALQDISLEKILDDNGRKSFCSDIAQIMQQGYAYLPAGVCVSSMGR 266
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ P C+A M NW+F+*
Sbjct: 267 PASYDRAIAWKVLNDEENPHCIAFMFMNWSFV* 365
Score = 24.4 bits (47), Expect(2) = 6e-034
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / +3
Query: 634 DAILCCSLK 608
DAI+CCSLK
Sbjct: 42 DAIMCCSLK 68
>gb|AA739773.1|AA739773 538 PtIFG2 Pinus taeda cDNA clone 8871M 3', mRNA sequence
Length = 663
Score = 138 bits (295), Expect = 5e-032
Identities = 52/93 (55%), Positives = 70/93 (75%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
F N AG D+LETT+V +QD+ LE +LD+ G+K+ + + IMQQG AYLP GVC SSMGR
Sbjct: 200 FXNQAGLDMLETTLVALQDISLEKILDDNGRKSFCSDIAQIMQQGYAYLPAGVCVSSMGR 379
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ P C+A M NW+F+*
Sbjct: 380 PASYDRAIAWKVLNDEENPHCIAFMFMNWSFV* 478
>gb|BE496570.1|BE496570 NXCI_020_G05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_020_G05 5' similar to Arabidopsis
thaliana sequence At1g52150 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 461
Score = 138 bits (295), Expect = 5e-032
Identities = 52/93 (55%), Positives = 70/93 (75%)
Frame = -3 / +3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN G D+LETT+V +QD+ LE +LD+ G+K+ + + IMQQG AYLP GVC SSMGR
Sbjct: 6 FANXXGLDMLETTLVALQDISLEKILDDNGRKSFCSDIAQIMQQGYAYLPAGVCVSSMGR 185
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ P C+A M NW+F+*
Sbjct: 186 PASYDRAIAWKVLNDEENPHCIAFMFMNWSFV* 284
>gb|AI920150.1|AI920150 1680 Pine Lambda Zap Xylem library Pinus taeda cDNA clone
g3_PL2CSUH, mRNA sequence
Length = 680
Score = 137 bits (294), Expect = 7e-032
Identities = 54/106 (50%), Positives = 71/106 (66%)
Frame = -3 / +3
Query: 625 LCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLA 446
+ C P FAN AG D+LETT+V +QD+ LE +LDE G+K L + IMQQG A
Sbjct: 174 IMCCSWKPLPVFTFANQAGLDMLETTLVALQDISLEKILDENGRKRLCSDFTQIMQQGYA 353
Query: 445 YLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
YLP G+C SSMGR SY++A+AWKV+ D+ C+A M NW+F+*
Sbjct: 354 YLPSGICISSMGRPVSYDRAIAWKVLNDEDVIHCIAFMFLNWSFV* 491
>gb|CX713945.1|CX713945 RTPQ1_15_G12.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_15_G12_A032 3', mRNA sequence
Length = 774
Score = 137 bits (294), Expect = 7e-032
Identities = 54/106 (50%), Positives = 71/106 (66%)
Frame = -3 / +1
Query: 625 LCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLA 446
+ C P FAN AG D+LETT+V +QD+ LE +LDE G+K L + IMQQG A
Sbjct: 247 IMCCSWKPLPVFTFANQAGLDMLETTLVALQDISLEKILDENGRKRLCSDFTQIMQQGYA 426
Query: 445 YLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
YLP G+C SSMGR SY++A+AWKV+ D+ C+A M NW+F+*
Sbjct: 427 YLPSGICISSMGRPVSYDRAIAWKVLNDEDVIHCIAFMFLNWSFV* 564
>gb|CO165491.1|CO165491 FLD1_54_H04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_54_H04_A029 5', mRNA sequence
Length = 815
Score = 130 bits (279), Expect(2) = 8e-031
Identities = 49/93 (52%), Positives = 68/93 (73%)
Frame = -3 / -1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K+ I+QQG AYLP G+C SSMGR
Sbjct: 407 FANQAGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGR 228
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ + C+ M NW+F+*
Sbjct: 227 PASYDRAIAWKVLNDEDSTHCIVFMFMNWSFM* 129
Score = 23.1 bits (44), Expect(2) = 8e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / -1
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 452 DAIMCCSVK 426
>gb|CV034557.1|CV034557 RTNACL1_10_A06.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_10_A06_A029 3', mRNA sequence
Length = 813
Score = 130 bits (279), Expect(2) = 8e-031
Identities = 49/93 (52%), Positives = 68/93 (73%)
Frame = -3 / +3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K+ I+QQG AYLP G+C SSMGR
Sbjct: 330 FANQAGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGR 509
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ + C+ M NW+F+*
Sbjct: 510 PASYDRAIAWKVLNDEDSTHCIVFMFMNWSFM* 608
Score = 23.1 bits (44), Expect(2) = 8e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +3
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 285 DAIMCCSVK 311
>gb|CX648317.1|CX648317 COLD1_27_H06.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_27_H06_A029 5', mRNA sequence
Length = 809
Score = 130 bits (279), Expect(2) = 8e-031
Identities = 49/93 (52%), Positives = 68/93 (73%)
Frame = -3 / -2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K+ I+QQG AYLP G+C SSMGR
Sbjct: 463 FANQAGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGR 284
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ + C+ M NW+F+*
Sbjct: 283 PASYDRAIAWKVLNDEDSTHCIVFMFMNWSFM* 185
Score = 23.1 bits (44), Expect(2) = 8e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / -2
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 508 DAIMCCSVK 482
>gb|CX648234.1|CX648234 COLD1_27_H06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_27_H06_A029 3', mRNA sequence
Length = 802
Score = 130 bits (279), Expect(2) = 8e-031
Identities = 49/93 (52%), Positives = 68/93 (73%)
Frame = -3 / -1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K+ I+QQG AYLP G+C SSMGR
Sbjct: 295 FANQAGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGR 116
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ + C+ M NW+F+*
Sbjct: 115 PASYDRAIAWKVLNDEDSTHCIVFMFMNWSFM* 17
Score = 23.1 bits (44), Expect(2) = 8e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / -1
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 340 DAIMCCSVK 314
>gb|CF672241.1|CF672241 RTCNT1_62_G02.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_62_G02_A029 3', mRNA sequence
Length = 784
Score = 130 bits (279), Expect(2) = 8e-031
Identities = 49/93 (52%), Positives = 68/93 (73%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K+ I+QQG AYLP G+C SSMGR
Sbjct: 299 FANQAGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGR 478
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ + C+ M NW+F+*
Sbjct: 479 PASYDRAIAWKVLNDEDSTHCIVFMFMNWSFM* 577
Score = 23.1 bits (44), Expect(2) = 8e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +2
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 254 DAIMCCSVK 280
>gb|DR056287.1|DR056287 RTCA1_29_F12.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_29_F12_A029 3', mRNA sequence
Length = 782
Score = 130 bits (279), Expect(2) = 8e-031
Identities = 49/93 (52%), Positives = 68/93 (73%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K+ I+QQG AYLP G+C SSMGR
Sbjct: 298 FANQAGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGR 477
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ + C+ M NW+F+*
Sbjct: 478 PASYDRAIAWKVLNDEDSTHCIVFMFMNWSFM* 576
Score = 23.1 bits (44), Expect(2) = 8e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 253 DAIMCCSVK 279
>gb|CO166187.1|CO166187 FLD1_60_A12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_60_A12_A029 3', mRNA sequence
Length = 751
Score = 130 bits (279), Expect(2) = 8e-031
Identities = 49/93 (52%), Positives = 68/93 (73%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K+ I+QQG AYLP G+C SSMGR
Sbjct: 266 FANQAGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGR 445
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ + C+ M NW+F+*
Sbjct: 446 PASYDRAIAWKVLNDEDSTHCIVFMFMNWSFM* 544
Score = 23.1 bits (44), Expect(2) = 8e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +2
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 221 DAIMCCSVK 247
>gb|CV034621.1|CV034621 RTNACL1_10_A06.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_10_A06_A029 5', mRNA sequence
Length = 731
Score = 130 bits (279), Expect(2) = 8e-031
Identities = 49/93 (52%), Positives = 68/93 (73%)
Frame = -3 / +3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K+ I+QQG AYLP G+C SSMGR
Sbjct: 306 FANQAGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGR 485
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ + C+ M NW+F+*
Sbjct: 486 PASYDRAIAWKVLNDEDSTHCIVFMFMNWSFM* 584
Score = 23.1 bits (44), Expect(2) = 8e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +3
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 261 DAIMCCSVK 287
>gb|DR742450.1|DR742450 RTCU1_4_D01.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_4_D01_A029 3', mRNA sequence
Length = 702
Score = 130 bits (279), Expect(2) = 8e-031
Identities = 49/93 (52%), Positives = 68/93 (73%)
Frame = -3 / -1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K+ I+QQG AYLP G+C SSMGR
Sbjct: 402 FANQAGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGR 223
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ + C+ M NW+F+*
Sbjct: 222 PASYDRAIAWKVLNDEDSTHCIVFMFMNWSFM* 124
Score = 23.1 bits (44), Expect(2) = 8e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / -1
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 447 DAIMCCSVK 421
>gb|DR013276.1|DR013276 HEAT1_18_G05.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_18_G05_A029 3', mRNA sequence
Length = 678
Score = 130 bits (279), Expect(2) = 8e-031
Identities = 49/93 (52%), Positives = 68/93 (73%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K+ I+QQG AYLP G+C SSMGR
Sbjct: 205 FANQAGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGR 384
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ + C+ M NW+F+*
Sbjct: 385 PASYDRAIAWKVLNDEDSTHCIVFMFMNWSFM* 483
Score = 23.1 bits (44), Expect(2) = 8e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 160 DAIMCCSVK 186
>gb|CO368668.1|CO368668 RTK1_42_C01.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_42_C01_A029 3', mRNA sequence
Length = 784
Score = 129 bits (277), Expect(2) = 1e-030
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT V +QD+ L+ +LDE G+K+ I+QQG AYLP G+C SSMGR
Sbjct: 299 FANQAGLDMLETTFVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGR 478
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ + C+ M NW+F+*
Sbjct: 479 PASYDRAIAWKVLNDEDSTHCIVFMFMNWSFM* 577
Score = 23.1 bits (44), Expect(2) = 1e-030
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +2
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 254 DAIMCCSVK 280
>gb|CO368744.1|CO368744 RTK1_42_C01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_42_C01_A029 5', mRNA sequence
Length = 758
Score = 129 bits (277), Expect(2) = 1e-030
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT V +QD+ L+ +LDE G+K+ I+QQG AYLP G+C SSMGR
Sbjct: 292 FANQAGLDMLETTFVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGR 471
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ + C+ M NW+F+*
Sbjct: 472 PASYDRAIAWKVLNDEDSTHCIVFMFMNWSFM* 570
Score = 23.1 bits (44), Expect(2) = 1e-030
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 247 DAIMCCSVK 273
>gb|CO368658.1|CO368658 RTK1_42_B01.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_42_B01_A029 3', mRNA sequence
Length = 558
Score = 132 bits (282), Expect = 3e-030
Identities = 50/93 (53%), Positives = 68/93 (73%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT V +QD+ L+ +LDE G+K+ I+QQG AYLP G+C SSMGR
Sbjct: 91 FANQAGLDMLETTFVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGR 270
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ + QC+ M NW+F+*
Sbjct: 271 PASYDRAIAWKVLNDEDSTQCIVFMFMNWSFM* 369
>gb|AW698003.1|AW698003 NXNV_079_D09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_079_D09 5' similar to Arabidopsis thaliana
sequence At1g52150 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 394
Score = 125 bits (268), Expect(2) = 2e-029
Identities = 47/93 (50%), Positives = 66/93 (70%)
Frame = -3 / +3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K+ I+QQG AYLP G+C SSMGR
Sbjct: 108 FANQAGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGR 287
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AW + D+ + C+ M NW+F+*
Sbjct: 288 PASYDRAIAWXXLNDEDSTHCIVFMFMNWSFM* 386
Score = 23.1 bits (44), Expect(2) = 2e-029
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +3
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 63 DAIMCCSVK 89
>gb|CF476401.1|CF476401 RTWW3_1_A12.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_1_A12_A022 3', mRNA sequence
Length = 537
Score = 125 bits (267), Expect(2) = 3e-029
Identities = 47/93 (50%), Positives = 66/93 (70%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K+ I+QQG AYLP G+C SSMGR
Sbjct: 52 FANQAGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGR 231
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
ASY++A+AWKV+ D+ + C+ NW+ +*
Sbjct: 232 PASYDRAIAWKVLNDEDSTHCIVFRFMNWSLM* 330
Score = 23.1 bits (44), Expect(2) = 3e-029
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 7 DAIMCCSVK 33
>gb|CF393740.1|CF393740 RTDS2_1_A05.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_1_A05_A021 3', mRNA sequence
Length = 573
Score = 128 bits (274), Expect = 4e-029
Identities = 48/93 (51%), Positives = 68/93 (73%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K+ I+QQG AYLP G+C SSMGR
Sbjct: 23 FANQAGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGR 202
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
AS+++A+AWKV+ D+ + C+ M NW+F+*
Sbjct: 203 PASHDRAIAWKVLNDEDSTHCIVFMFMNWSFM* 301
>gb|CF477415.1|CF477415 RTWW3_7_G07.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_7_G07_A022 5', mRNA sequence
Length = 752
Score = 119 bits (255), Expect(2) = 1e-027
Identities = 45/88 (51%), Positives = 62/88 (70%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K+ I+QQG AYLP G+C SSMGR
Sbjct: 487 FANQAGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGR 666
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLAN 323
ASY++ +AWKV+ D+ + C+ M N
Sbjct: 667 PASYDRVIAWKVLNDEDSTHCIVFMFMN 750
Score = 23.1 bits (44), Expect(2) = 1e-027
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 442 DAIMCCSVK 468
>gb|DR387675.1|DR387675 RTHG1_23_H11.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_23_H11_A029 3', mRNA sequence
Length = 760
Score = 85.8 bits (181), Expect(3) = 2e-027
Identities = 31/57 (54%), Positives = 44/57 (77%)
Frame = -3 / +2
Query: 478 QLPAIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
+L +I+QQG AYLP G+C SSMGR ASY++A+AWKV+ D+ + C+ M NW+F+*
Sbjct: 383 RLWSIIQQGYAYLPAGICLSSMGRPASYDRAIAWKVLNDEDSTHCIVFMFMNWSFM* 553
Score = 51.5 bits (106), Expect(3) = 2e-027
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = -3 / +3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKA 488
FAN AG D+LETT+V +QD+ L+ +LDE G+K+
Sbjct: 276 FANQAGLDMLETTLVALQDISLDKILDENGRKS 374
Score = 23.1 bits (44), Expect(3) = 2e-027
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +3
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 231 DAIMCCSVK 257
>gb|CO361058.1|CO361058 NDL2_2_H09.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_2_H09_A029 3', mRNA sequence
Length = 764
Score = 122 bits (261), Expect = 2e-027
Identities = 46/86 (53%), Positives = 64/86 (74%)
Frame = -3 / +1
Query: 565 DILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQA 386
D+LETT+V + D+ LE +LD+ G+K+ + + IMQQG AYLP GVC SSMGR ASY++A
Sbjct: 1 DMLETTLVALPDISLEKILDDNGRKSFCSDIAQIMQQGYAYLPAGVCVSSMGRPASYDRA 180
Query: 385 VAWKVVGDDGAPQCLALMLANWTFI* 308
+AWKV+ D+ P C+A NW+F+*
Sbjct: 181 IAWKVLNDEENPHCIAFTFMNWSFV* 258
>gb|AW626638.1|AW626638 NXNV067G01 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV067G01 5' similar to Arabidopsis thaliana sequence
At1g52150 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 380
Score = 116 bits (247), Expect = 2e-025
Identities = 43/85 (50%), Positives = 62/85 (72%)
Frame = -3 / +3
Query: 562 ILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQAV 383
+LETT+V +QD+ L+ +LDE G+K+ I+QQG AYLP G+C SSMGR ASY++A+
Sbjct: 3 MLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGRPASYDRAI 182
Query: 382 AWKVVGDDGAPQCLALMLANWTFI* 308
AWKV+ D+ + C+ M NW+F+*
Sbjct: 183 AWKVLNDEDSTHCIVFMFMNWSFM* 257
>gb|CF477362.1|CF477362 RTWW3_7_G07.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_7_G07_A022 3', mRNA sequence
Length = 530
Score = 63.8 bits (133), Expect(2) = 4e-022
Identities = 21/42 (50%), Positives = 31/42 (73%)
Frame = -3 / +3
Query: 433 GVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
G+C SSMGR ASY++ +AWKV+ D+ + C+ M NW+F+*
Sbjct: 147 GICLSSMGRPASYDRVIAWKVLNDEDSTHCIVFMFMNWSFM* 272
Score = 60.6 bits (126), Expect(2) = 4e-022
Identities = 24/46 (52%), Positives = 33/46 (71%)
Frame = -3 / +2
Query: 574 AGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLP 437
AG D+LETT+V +QD+ L+ +LDE G+K+ I+QQG AYLP
Sbjct: 5 AGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLP 142
>gb|DR056364.1|DR056364 RTCA1_29_F12.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_29_F12_A029 5', mRNA sequence
Length = 638
Score = 99.1 bits (210), Expect(2) = 2e-021
Identities = 39/69 (56%), Positives = 52/69 (75%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K+ I+QQG AYLP G+C SSMGR
Sbjct: 431 FANQAGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGR 610
Query: 406 QASYEQAVA 380
ASY++A+A
Sbjct: 611 PASYDRAIA 637
Score = 23.1 bits (44), Expect(2) = 2e-021
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +2
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 386 DAIMCCSVK 412
>gb|DR090523.1|DR090523 RTAL1_15_D10.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_15_D10_A029 5', mRNA sequence
Length = 762
Score = 102 bits (218), Expect = 2e-021
Identities = 42/91 (46%), Positives = 55/91 (60%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN A D+LETT + DL + LDE +K + +MQQG AYLP G+ SSMGR
Sbjct: 323 FANEAALDMLETTSGGLHDLRWDQTLDETEKKNAYSDFTKVMQQGFAYLPAGIRLSSMGR 502
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTF 314
+YE+A+AW V D+ C+A M NW+F
Sbjct: 503 PVAYERAMAWSVANDNERMPCVAFMFVNWSF 595
>gb|DR168719.1|DR168719 RTPHOS1_27_H08.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_27_H08_A029 3', mRNA sequence
Length = 713
Score = 102 bits (218), Expect = 2e-021
Identities = 42/91 (46%), Positives = 55/91 (60%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN A D+LETT + DL + LDE +K + +MQQG AYLP G+ SSMGR
Sbjct: 241 FANEAALDMLETTSGGLHDLRWDQTLDETEKKNAYSDFTKVMQQGFAYLPAGIRLSSMGR 420
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTF 314
+YE+A+AW V D+ C+A M NW+F
Sbjct: 421 PVAYERAMAWSVANDNERMPCVAFMFVNWSF 513
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 293,412,620
Number of Sequences: 355925
Number of extensions: 4207036
Number of successful extensions: 41408
Number of sequences better than 1.0e-020: 43
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8683771200
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)