TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591032.2.1
(735 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR023271.1|DR023271 STRS1_56_B12.g1_A034 Shoot tip pitch... 308 4e-083
gb|DR018738.1|DR018738 STRS1_25_H09.b1_A034 Shoot tip pitch... 299 1e-080
gb|DR060851.1|DR060851 RTNIT1_30_A04.g1_A029 Roots minus ni... 299 1e-080
gb|DR088977.1|DR088977 RTAL1_5_G05.g1_A029 Roots plus added... 286 1e-076
gb|CO166677.1|CO166677 FLD1_63_E10.g1_A029 Root flooded Pin... 273 1e-072
gb|DR095991.1|DR095991 STRR1_25_B08.b1_A033 Stem Response R... 273 1e-072
gb|DR163514.1|DR163514 RTFE1_43_H03.b1_A029 Roots minus iro... 273 1e-072
gb|DR163606.1|DR163606 RTFE1_43_H03.g1_A029 Roots minus iro... 273 1e-072
gb|CX652350.1|CX652350 COLD1_58_B10.g1_A029 Root cold Pinus... 270 6e-072
gb|DR047931.1|DR047931 RTBOR1_5_C10.g2_A029 Roots plus adde... 270 8e-072
gb|DR117407.1|DR117407 RTMG1_6_F10.g1_A029 Roots minus magn... 268 4e-071
gb|BX255099.1|BX255099 BX255099 Pinus pinaster differenciat... 254 4e-067
gb|DR088892.1|DR088892 RTAL1_5_G05.b1_A029 Roots plus added... 230 1e-059
gb|DR060775.1|DR060775 RTNIT1_30_A04.b1_A029 Roots minus ni... 198 4e-050
gb|CF401310.1|CF401310 RTWW1_11_E11.g1_A015 Well-watered lo... 140 5e-050
gb|DR058833.1|DR058833 RTNIT1_14_E01.b1_A029 Roots minus ni... 196 2e-049
gb|DR058919.1|DR058919 RTNIT1_14_E01.g1_A029 Roots minus ni... 155 4e-037
gb|CF398598.1|CF398598 RTDS3_13_D12.b1_A022 Drought-stresse... 154 6e-037
gb|DR049993.1|DR049993 RTBOR1_20_C02.g1_A029 Roots plus add... 104 4e-035
gb|CF395349.1|CF395349 RTDS2_11_A05.b1_A021 Drought-stresse... 100 2e-033
gb|BE496448.1|BE496448 NXCI_018_C03_F NXCI (Nsf Xylem Compr... 101 5e-031
gb|DR058015.1|DR058015 RTNIT1_9_D10.b1_A029 Roots minus nit... 85 7e-029
gb|CO172421.1|CO172421 NDL1_29_D06.g1_A029 Needles control ... 90 1e-028
gb|CO172345.1|CO172345 NDL1_29_D06.b1_A029 Needles control ... 90 1e-028
gb|DR049315.1|DR049315 RTBOR1_15_H05.b1_A029 Roots plus add... 96 9e-028
gb|DR684550.1|DR684550 EST1074627 Normalized pine embryo li... 104 2e-026
gb|AW011438.1|AW011438 ST20G06 Pine TriplEx shoot tip libra... 79 3e-025
gb|CO196899.1|CO196899 GEO1_2_A08.g1_A029 Root gravitropism... 103 9e-025
gb|DR049307.1|DR049307 RTBOR1_15_G04.b1_A029 Roots plus add... 84 4e-024
gb|DR058708.1|DR058708 RTNIT1_13_A02.g1_A029 Roots minus ni... 82 2e-023
>gb|DR023271.1|DR023271 STRS1_56_B12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_56_B12_A034 5', mRNA sequence
Length = 835
Score = 308 bits (666), Expect = 4e-083
Identities = 121/136 (88%), Positives = 130/136 (95%)
Frame = -2 / +2
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
LIAEP+ ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFG+FLYELLFGKTPFKGS NRA
Sbjct: 296 LIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRA 475
Query: 554 TLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWAL 375
TLFNV+GQ LRFPE P VSF+ARDLIRGLLVKEPQ RLAYKRGATEIKQHPFFEGVNWAL
Sbjct: 476 TLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWAL 655
Query: 374 IRCASPPEVPKPVEIE 327
IRCA+PPE+PKP++I+
Sbjct: 656 IRCATPPEIPKPIDID 703
Score = 235 bits (507), Expect = 3e-061
Identities = 102/140 (72%), Positives = 115/140 (82%)
Frame = +1 / -2
Query: 316 FDGLSISTGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAE 495
F S+S GFG SGG+AH + AQFTPSKKGCCLISVAPRL A+RC GSFTS+PLI+SLA
Sbjct: 714 FPNKSMSIGFGISGGVAHRIRAQFTPSKKGCCLISVAPRLYANRCCGSFTSKPLIKSLAA 535
Query: 496 KLTAGYSGKRSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGA 675
KLT G SG P TLNSVARL +PLKGVFPN SSY+N P VHQSTALP PSPL+ISGA
Sbjct: 534 KLTVGDSGNLRGCPTTLNSVARLPEPLKGVFPNRSSYRNIPNVHQSTALP*PSPLIISGA 355
Query: 676 RYSCVPTNDIDRASLGSAMS 735
RYS VPTND++RA +GSA+S
Sbjct: 354 RYSWVPTNDMERALVGSAIS 295
>gb|DR018738.1|DR018738 STRS1_25_H09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_25_H09_A034 3', mRNA sequence
Length = 838
Score = 299 bits (648), Expect = 1e-080
Identities = 118/139 (84%), Positives = 128/139 (92%)
Frame = -2 / +2
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
LIAEP+ ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFG+FL+EL+FGKTPFKGS NRA
Sbjct: 5 LIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELIFGKTPFKGSGNRA 184
Query: 554 TLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWAL 375
TLFNV+GQ LRFPE P SF+ARDLIRGLLVKEPQ RLA KRGATEIKQHPFFEGVNWAL
Sbjct: 185 TLFNVVGQPLRFPESPTASFAARDLIRGLLVKEPQHRLAVKRGATEIKQHPFFEGVNWAL 364
Query: 374 IRCASPPEVPKPVEIERPS 318
IRC +PP++PKP EIE P+
Sbjct: 365 IRCTTPPDIPKPFEIELPA 421
Score = 220 bits (474), Expect = 1e-056
Identities = 98/140 (70%), Positives = 108/140 (77%)
Frame = +1 / -2
Query: 316 FDGLSISTGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAE 495
F G SIS GFG SGG+ + AQFTPSKKGCCLISVAPRL A RC GSFTS+PLI+SLA
Sbjct: 423 FAGNSISKGFGMSGGVVQRIRAQFTPSKKGCCLISVAPRLTAKRC*GSFTSKPLIKSLAA 244
Query: 496 KLTAGYSGKRSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGA 675
KL G SG P TL VARL DPL GVFP SS +N PKVHQSTALP PSPL+ISGA
Sbjct: 243 KLAVGDSGNLRGCPTTLKRVARLPDPLNGVFPKISSCRNIPKVHQSTALPCPSPLIISGA 64
Query: 676 RYSCVPTNDIDRASLGSAMS 735
+YS VPTND++RA +GSAMS
Sbjct: 63 KYSWVPTNDMERALVGSAMS 4
>gb|DR060851.1|DR060851 RTNIT1_30_A04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_30_A04_A029 5', mRNA sequence
Length = 730
Score = 299 bits (648), Expect = 1e-080
Identities = 118/139 (84%), Positives = 128/139 (92%)
Frame = -2 / -1
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
LIAEP+ ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFG+FL+EL+FGKTPFKGS NRA
Sbjct: 625 LIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELIFGKTPFKGSGNRA 446
Query: 554 TLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWAL 375
TLFNV+GQ LRFPE P SF+ARDLIRGLLVKEPQ RLA KRGATEIKQHPFFEGVNWAL
Sbjct: 445 TLFNVVGQPLRFPESPTASFAARDLIRGLLVKEPQHRLAVKRGATEIKQHPFFEGVNWAL 266
Query: 374 IRCASPPEVPKPVEIERPS 318
IRC +PP++PKP EIE P+
Sbjct: 265 IRCTTPPDIPKPFEIELPA 209
Score = 220 bits (474), Expect = 1e-056
Identities = 98/140 (70%), Positives = 108/140 (77%)
Frame = +1 / +3
Query: 316 FDGLSISTGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAE 495
F G SIS GFG SGG+ + AQFTPSKKGCCLISVAPRL A RC GSFTS+PLI+SLA
Sbjct: 207 FAGNSISKGFGMSGGVVQRIRAQFTPSKKGCCLISVAPRLTAKRC*GSFTSKPLIKSLAA 386
Query: 496 KLTAGYSGKRSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGA 675
KL G SG P TL VARL DPL GVFP SS +N PKVHQSTALP PSPL+ISGA
Sbjct: 387 KLAVGDSGNLRGCPTTLKRVARLPDPLNGVFPKISSCRNIPKVHQSTALPCPSPLIISGA 566
Query: 676 RYSCVPTNDIDRASLGSAMS 735
+YS VPTND++RA +GSAMS
Sbjct: 567 KYSWVPTNDMERALVGSAMS 626
>gb|DR088977.1|DR088977 RTAL1_5_G05.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_5_G05_A029 5', mRNA sequence
Length = 853
Score = 286 bits (619), Expect = 1e-076
Identities = 111/138 (80%), Positives = 127/138 (92%)
Frame = -2 / +2
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
L+AEP+ ARS SFVGTHEYLAPEI+KGEGHGSAVDWWT+G+FLYELLFGKTPFKG+SN A
Sbjct: 143 LVAEPTSARSNSFVGTHEYLAPEIVKGEGHGSAVDWWTYGIFLYELLFGKTPFKGASNTA 322
Query: 554 TLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWAL 375
TL NV+GQ L+FPE P VS++A+DLIRGLLVKEPQ RLA+KRGATEIKQHPFFEG+NWAL
Sbjct: 323 TLNNVVGQPLKFPETPVVSYAAKDLIRGLLVKEPQHRLAFKRGATEIKQHPFFEGLNWAL 502
Query: 374 IRCASPPEVPKPVEIERP 321
IRC++PPEVPKP+E P
Sbjct: 503 IRCSTPPEVPKPLETTFP 556
Score = 213 bits (459), Expect = 1e-054
Identities = 96/138 (69%), Positives = 105/138 (76%)
Frame = +1 / -2
Query: 322 GLSISTGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKL 501
G +S GFGTSGG+ + AQF PSKKGCCLISVAPRL A+RC GSFTS+PLI+SLA L
Sbjct: 555 GNVVSKGFGTSGGVEQRIRAQFKPSKKGCCLISVAPRLNANRCCGSFTSKPLIKSLAA*L 376
Query: 502 TAGYSGKRSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGARY 681
T G SG P TL SVA LL PL GVFPN SSYKN P VHQSTALP PSPL ISGA+Y
Sbjct: 375 TTGVSGNLRGCPTTLLSVAVLLAPLNGVFPNRSSYKNIP*VHQSTALP*PSPLTISGAKY 196
Query: 682 SCVPTNDIDRASLGSAMS 735
SCVPTN+ D A +GSA S
Sbjct: 195 SCVPTNEFDLALVGSATS 142
Score = 112 bits (239), Expect = 3e-024
Identities = 52/132 (39%), Positives = 74/132 (56%)
Frame = +3 / -1
Query: 333 LDRLWYLRWACAPYERPIHALKEGMLLDLRGSTLVGQPLLGLLHKQTPDQIPRREADGRV 512
L RLW RW+ + P+ LKE +L D R TL Q +L L +KQTPDQ+ R A R
Sbjct: 544 LQRLWNFRWSGTANKSPVQTLKERVLFDFRCPTLECQSVLWLFYKQTPDQVLGRIAYNRC 365
Query: 513 LREAQLLANDIEQRGPVAGSLERRLPEQQLVQEYPEGPPVDGAAMALAFDDLGGQVLVRP 692
E + L+ I +RG + LE RL +Q+L+ +Y GPP++ M AF++ G Q+ +
Sbjct: 364 FWELERLSYHIVKRGSITCPLEWRLSKQKLI*KYSVGPPINSTPMTFAFNNFGSQIFMCS 185
Query: 693 NERHRPCVAGLC 728
N+ PC LC
Sbjct: 184 NK*I*PCTRRLC 149
>gb|CO166677.1|CO166677 FLD1_63_E10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_63_E10_A029 5', mRNA sequence
Length = 882
Score = 273 bits (590), Expect = 1e-072
Identities = 105/140 (75%), Positives = 124/140 (88%)
Frame = -2 / -2
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
LIAEP+ ARSMSFVGTHEYLAPEIIKG+GHGSAVDWWTFG+FLYELL+G TPFKG+SNR
Sbjct: 704 LIAEPTSARSMSFVGTHEYLAPEIIKGQGHGSAVDWWTFGIFLYELLYGTTPFKGASNRE 525
Query: 554 TLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWAL 375
TL NV+GQ L+FP+ P VSF+ARDLIRGLLVK+PQ R+ +KRGATEIKQHPFF+ NWAL
Sbjct: 524 TLENVVGQPLKFPDSPTVSFAARDLIRGLLVKDPQHRIGFKRGATEIKQHPFFDSANWAL 345
Query: 374 IRCASPPEVPKPVEIERPSN 315
IR +PP++PKPV++ +N
Sbjct: 344 IRSTTPPQIPKPVDLSFLTN 285
Score = 192 bits (413), Expect = 3e-048
Identities = 86/134 (64%), Positives = 99/134 (73%)
Frame = +1 / +1
Query: 334 STGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKLTAGY 513
STGFG GG+ + AQF SK GCCLISVAP L C GSFTS+PLI+S A KLT G
Sbjct: 304 STGFGI*GGVVLRIRAQFALSKNGCCLISVAPLLKPILCCGSFTSKPLIKSRAAKLTVGE 483
Query: 514 SGKRSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGARYSCVP 693
SG + P T ++V+RLL PL GV P SSSYK P VHQSTALPWP PL+ISGA+YS VP
Sbjct: 484 SGNFNGCPTTFSNVSRLLAPLNGVVP*SSSYKKIPNVHQSTALPWPCPLIISGAKYS*VP 663
Query: 694 TNDIDRASLGSAMS 735
TND+DRA +GSA+S
Sbjct: 664 TNDMDRALVGSAIS 705
>gb|DR095991.1|DR095991 STRR1_25_B08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_25_B08_A033 3', mRNA sequence
Length = 843
Score = 273 bits (590), Expect = 1e-072
Identities = 105/140 (75%), Positives = 124/140 (88%)
Frame = -2 / +3
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
LIAEP+ ARSMSFVGTHEYLAPEIIKG+GHGSAVDWWTFG+FLYELL+G TPFKG+SNR
Sbjct: 243 LIAEPTSARSMSFVGTHEYLAPEIIKGQGHGSAVDWWTFGIFLYELLYGTTPFKGASNRE 422
Query: 554 TLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWAL 375
TL NV+GQ L+FP+ P VSF+ARDLIRGLLVK+PQ R+ +KRGATEIKQHPFF+ NWAL
Sbjct: 423 TLENVVGQPLKFPDCPTVSFAARDLIRGLLVKDPQHRIGFKRGATEIKQHPFFDSANWAL 602
Query: 374 IRCASPPEVPKPVEIERPSN 315
IR +PP++PKPV++ +N
Sbjct: 603 IRSTTPPQIPKPVDLSFLTN 662
Score = 192 bits (414), Expect = 2e-048
Identities = 86/134 (64%), Positives = 99/134 (73%)
Frame = +1 / -3
Query: 334 STGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKLTAGY 513
STGFG GG+ + AQF SK GCCLISVAP L C GSFTS+PLI+S A KLT G
Sbjct: 643 STGFGI*GGVVLRIRAQFALSKNGCCLISVAPLLKPILCCGSFTSKPLIKSRAAKLTVGQ 464
Query: 514 SGKRSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGARYSCVP 693
SG + P T ++V+RLL PL GV P SSSYK P VHQSTALPWP PL+ISGA+YS VP
Sbjct: 463 SGNFNGCPTTFSNVSRLLAPLNGVVP*SSSYKKIPNVHQSTALPWPCPLIISGAKYS*VP 284
Query: 694 TNDIDRASLGSAMS 735
TND+DRA +GSA+S
Sbjct: 283 TNDMDRALVGSAIS 242
>gb|DR163514.1|DR163514 RTFE1_43_H03.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_43_H03_A029 3', mRNA sequence
Length = 774
Score = 273 bits (590), Expect = 1e-072
Identities = 105/140 (75%), Positives = 124/140 (88%)
Frame = -2 / +3
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
LIAEP+ ARSMSFVGTHEYLAPEIIKG+GHGSAVDWWTFG+FLYELL+G TPFKG+SNR
Sbjct: 63 LIAEPTSARSMSFVGTHEYLAPEIIKGQGHGSAVDWWTFGIFLYELLYGTTPFKGASNRE 242
Query: 554 TLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWAL 375
TL NV+GQ L+FP+ P VSF+ARDLIRGLLVK+PQ R+ +KRGATEIKQHPFF+ NWAL
Sbjct: 243 TLENVVGQPLKFPDSPTVSFAARDLIRGLLVKDPQHRIGFKRGATEIKQHPFFDSANWAL 422
Query: 374 IRCASPPEVPKPVEIERPSN 315
IR +PP++PKPV++ +N
Sbjct: 423 IRSTTPPQIPKPVDLSFLTN 482
Score = 192 bits (413), Expect = 3e-048
Identities = 86/134 (64%), Positives = 99/134 (73%)
Frame = +1 / -3
Query: 334 STGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKLTAGY 513
STGFG GG+ + AQF SK GCCLISVAP L C GSFTS+PLI+S A KLT G
Sbjct: 463 STGFGI*GGVVLRIRAQFALSKNGCCLISVAPLLKPILCCGSFTSKPLIKSRAAKLTVGE 284
Query: 514 SGKRSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGARYSCVP 693
SG + P T ++V+RLL PL GV P SSSYK P VHQSTALPWP PL+ISGA+YS VP
Sbjct: 283 SGNFNGCPTTFSNVSRLLAPLNGVVP*SSSYKKIPNVHQSTALPWPCPLIISGAKYS*VP 104
Query: 694 TNDIDRASLGSAMS 735
TND+DRA +GSA+S
Sbjct: 103 TNDMDRALVGSAIS 62
>gb|DR163606.1|DR163606 RTFE1_43_H03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_43_H03_A029 5', mRNA sequence
Length = 871
Score = 273 bits (590), Expect = 1e-072
Identities = 105/140 (75%), Positives = 124/140 (88%)
Frame = -2 / +2
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
LIAEP+ ARSMSFVGTHEYLAPEIIKG+GHGSAVDWWTFG+FLYELL+G TPFKG+SNR
Sbjct: 200 LIAEPTSARSMSFVGTHEYLAPEIIKGQGHGSAVDWWTFGIFLYELLYGTTPFKGASNRE 379
Query: 554 TLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWAL 375
TL NV+GQ L+FP+ P VSF+ARDLIRGLLVK+PQ R+ +KRGATEIKQHPFF+ NWAL
Sbjct: 380 TLENVVGQPLKFPDSPTVSFAARDLIRGLLVKDPQHRIGFKRGATEIKQHPFFDSANWAL 559
Query: 374 IRCASPPEVPKPVEIERPSN 315
IR +PP++PKPV++ +N
Sbjct: 560 IRSTTPPQIPKPVDLSFLTN 619
Score = 192 bits (413), Expect = 3e-048
Identities = 86/134 (64%), Positives = 99/134 (73%)
Frame = +1 / -2
Query: 334 STGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKLTAGY 513
STGFG GG+ + AQF SK GCCLISVAP L C GSFTS+PLI+S A KLT G
Sbjct: 600 STGFGI*GGVVLRIRAQFALSKNGCCLISVAPLLKPILCCGSFTSKPLIKSRAAKLTVGE 421
Query: 514 SGKRSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGARYSCVP 693
SG + P T ++V+RLL PL GV P SSSYK P VHQSTALPWP PL+ISGA+YS VP
Sbjct: 420 SGNFNGCPTTFSNVSRLLAPLNGVVP*SSSYKKIPNVHQSTALPWPCPLIISGAKYS*VP 241
Query: 694 TNDIDRASLGSAMS 735
TND+DRA +GSA+S
Sbjct: 240 TNDMDRALVGSAIS 199
>gb|CX652350.1|CX652350 COLD1_58_B10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_58_B10_A029 5', mRNA sequence
Length = 781
Score = 270 bits (585), Expect = 6e-072
Identities = 104/140 (74%), Positives = 123/140 (87%)
Frame = -2 / -1
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
LIAEP+ ARSMSFVGTHEYLAPEIIKG+GHGSAVDWWTFG+FLYELL+G TPFKG+SNR
Sbjct: 616 LIAEPTSARSMSFVGTHEYLAPEIIKGQGHGSAVDWWTFGIFLYELLYGTTPFKGASNRE 437
Query: 554 TLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWAL 375
TL NV+GQ L+FP+ P VSF+ARDLIRGLLVK+PQ R+ +KRGATE KQHPFF+ NWAL
Sbjct: 436 TLENVVGQPLKFPDSPTVSFAARDLIRGLLVKDPQHRIGFKRGATETKQHPFFDSANWAL 257
Query: 374 IRCASPPEVPKPVEIERPSN 315
IR +PP++PKPV++ +N
Sbjct: 256 IRSTTPPQIPKPVDLSFLTN 197
Score = 191 bits (412), Expect = 4e-048
Identities = 85/134 (63%), Positives = 99/134 (73%)
Frame = +1 / +3
Query: 334 STGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKLTAGY 513
STGFG GG+ + AQF SK GCCL+SVAP L C GSFTS+PLI+S A KLT G
Sbjct: 216 STGFGI*GGVVLRIRAQFALSKNGCCLVSVAPLLKPILCCGSFTSKPLIKSRAAKLTVGE 395
Query: 514 SGKRSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGARYSCVP 693
SG + P T ++V+RLL PL GV P SSSYK P VHQSTALPWP PL+ISGA+YS VP
Sbjct: 396 SGNFNGCPTTFSNVSRLLAPLNGVVP*SSSYKKIPNVHQSTALPWPCPLIISGAKYS*VP 575
Query: 694 TNDIDRASLGSAMS 735
TND+DRA +GSA+S
Sbjct: 576 TNDMDRALVGSAIS 617
>gb|DR047931.1|DR047931 RTBOR1_5_C10.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_5_C10_A029 5', mRNA sequence
Length = 787
Score = 270 bits (584), Expect = 8e-072
Identities = 104/140 (74%), Positives = 123/140 (87%)
Frame = -2 / -1
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
LIAEP+ ARSMSFVGTHEYLAPEIIKG+GHGSAVDWWTFG+FLYELL+G PFKG+SNR
Sbjct: 592 LIAEPTSARSMSFVGTHEYLAPEIIKGQGHGSAVDWWTFGIFLYELLYGTIPFKGASNRE 413
Query: 554 TLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWAL 375
TL NV+GQ L+FP+ P VSF+ARDLIRGLLVK+PQ R+ +KRGATEIKQHPFF+ NWAL
Sbjct: 412 TLENVVGQPLKFPDSPTVSFAARDLIRGLLVKDPQHRIGFKRGATEIKQHPFFDSANWAL 233
Query: 374 IRCASPPEVPKPVEIERPSN 315
IR +PP++PKPV++ +N
Sbjct: 232 IRSTTPPQIPKPVDLSFLTN 173
Score = 191 bits (412), Expect = 4e-048
Identities = 85/134 (63%), Positives = 99/134 (73%)
Frame = +1 / +3
Query: 334 STGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKLTAGY 513
STGFG GG+ + AQF SK GCCLISVAP L C GSFTS+PLI+S A KLT G
Sbjct: 192 STGFGI*GGVVLRIRAQFALSKNGCCLISVAPLLKPILCCGSFTSKPLIKSRAAKLTVGE 371
Query: 514 SGKRSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGARYSCVP 693
SG + P T ++V+RLL PL G+ P SSSYK P VHQSTALPWP PL+ISGA+YS VP
Sbjct: 372 SGNFNGCPTTFSNVSRLLAPLNGIVP*SSSYKKIPNVHQSTALPWPCPLIISGAKYS*VP 551
Query: 694 TNDIDRASLGSAMS 735
TND+DRA +GSA+S
Sbjct: 552 TNDMDRALVGSAIS 593
>gb|DR117407.1|DR117407 RTMG1_6_F10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_6_F10_A029 5', mRNA sequence
Length = 831
Score = 268 bits (579), Expect = 4e-071
Identities = 103/127 (81%), Positives = 118/127 (92%)
Frame = -2 / +3
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
L+AEP+ ARS SFVGTHEYLAPEI+KGEGHGSAVDWWT+G+FLYELLFGKTPFKG+ N A
Sbjct: 450 LVAEPTSARSNSFVGTHEYLAPEIVKGEGHGSAVDWWTYGIFLYELLFGKTPFKGAGNTA 629
Query: 554 TLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWAL 375
TL NV+GQ L+FPE P VS++A+DLIRGLLVKEPQ RLA+KRGATEIKQHPFFEG+NWAL
Sbjct: 630 TLNNVVGQPLKFPETPVVSYAAKDLIRGLLVKEPQHRLAFKRGATEIKQHPFFEGLNWAL 809
Query: 374 IRCASPP 354
IRC++PP
Sbjct: 810 IRCSTPP 830
Score = 194 bits (418), Expect = 6e-049
Identities = 88/127 (69%), Positives = 96/127 (75%)
Frame = +1 / -3
Query: 355 GGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKLTAGYSGKRSCW 534
GG+ + AQF PSKKGCCLISVAPRL A+RC GSFTS+PLI+SLA LT G SG
Sbjct: 829 GGVEQRIRAQFKPSKKGCCLISVAPRLNANRCCGSFTSKPLIKSLAA*LTTGVSGNLRGC 650
Query: 535 PMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGARYSCVPTNDIDRA 714
P TL SVA L PL GVFPN SSYKN P VHQSTALP PSPL ISGA+YSCVPTN+ D A
Sbjct: 649 PTTLLSVAVLPAPLNGVFPNRSSYKNIP*VHQSTALP*PSPLTISGAKYSCVPTNEFDLA 470
Query: 715 SLGSAMS 735
+GSA S
Sbjct: 469 LVGSATS 449
Score = 102 bits (217), Expect = 3e-021
Identities = 48/125 (38%), Positives = 70/125 (56%)
Frame = +3 / -2
Query: 354 RWACAPYERPIHALKEGMLLDLRGSTLVGQPLLGLLHKQTPDQIPRREADGRVLREAQLL 533
RW+ + P+ LKE +L D R TL Q +L L +KQTPDQ+ R A R E + L
Sbjct: 830 RWSGTANKSPVQTLKERVLFDFRCPTLECQSVLWLFYKQTPDQVLGRIAYNRCFWELERL 651
Query: 534 ANDIEQRGPVAGSLERRLPEQQLVQEYPEGPPVDGAAMALAFDDLGGQVLVRPNERHRPC 713
+ I +RG + LE RL +Q+L+ +Y GPP++ M AF++ G Q+ + N+ PC
Sbjct: 650 SYHIVKRGSITCPLEWRLSKQKLI*KYSVGPPINSTPMTFAFNNFGSQIFMCSNK*I*PC 471
Query: 714 VAGLC 728
LC
Sbjct: 470 TRRLC 456
>gb|BX255099.1|BX255099 BX255099 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP110G11, mRNA sequence
Length = 505
Score = 254 bits (550), Expect = 4e-067
Identities = 102/118 (86%), Positives = 108/118 (91%)
Frame = -2 / +3
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
LIAEP+ ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFG+FL+EL+FGKTPFKGS NRA
Sbjct: 150 LIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELIFGKTPFKGSGNRA 329
Query: 554 TLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNW 381
TLFNV+GQ LRFPE P SF+ARDLIRGLLVKEPQ RLA KRGA IKQHPFFEGVNW
Sbjct: 330 TLFNVVGQPLRFPESPTASFAARDLIRGLLVKEPQHRLAVKRGAN*IKQHPFFEGVNW 503
Score = 193 bits (415), Expect = 2e-048
Identities = 85/119 (71%), Positives = 93/119 (78%)
Frame = +1 / -1
Query: 379 AQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKLTAGYSGKRSCWPMTLNSVA 558
AQFTPSKKGCCLI APRL A RC GSFTS+PLI+SLA KL G SG P TL VA
Sbjct: 505 AQFTPSKKGCCLIQFAPRLTAKRC*GSFTSKPLIKSLAAKLAVGDSGNLRGCPTTLKRVA 326
Query: 559 RLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGARYSCVPTNDIDRASLGSAMS 735
RL DPL GVFP SS +N PKVHQSTALP PSPL+ISGA+YS VPTND++RA +GSAMS
Sbjct: 325 RLPDPLNGVFPKISSCRNIPKVHQSTALPCPSPLIISGAKYSWVPTNDMERALVGSAMS 149
>gb|DR088892.1|DR088892 RTAL1_5_G05.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_5_G05_A029 3', mRNA sequence
Length = 762
Score = 230 bits (496), Expect = 1e-059
Identities = 88/110 (80%), Positives = 101/110 (91%)
Frame = -2 / +3
Query: 650 GHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVIGQQLRFPEYPAVSFSARDLIRG 471
GHGSAVDWWT+G+FLYELLFGKTPFKG+SN ATL NV+GQ L+FPE P VS++A+DLIRG
Sbjct: 3 GHGSAVDWWTYGIFLYELLFGKTPFKGASNTATLNNVVGQPLKFPETPVVSYAAKDLIRG 182
Query: 470 LLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERP 321
LLVKEPQ RLA+KRGATEIKQHPFFEG+NWALIRC++PPEVPKP+E P
Sbjct: 183 LLVKEPQHRLAFKRGATEIKQHPFFEGLNWALIRCSTPPEVPKPLETTFP 332
Score = 166 bits (357), Expect = 2e-040
Identities = 76/110 (69%), Positives = 82/110 (74%)
Frame = +1 / -3
Query: 322 GLSISTGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAEKL 501
G +S GFGTSGG+ + AQF PSKKGCCLISVAPRL A+RC GSFTS+PLI+SLA L
Sbjct: 331 GNVVSKGFGTSGGVEQRIRAQFKPSKKGCCLISVAPRLNANRCCGSFTSKPLIKSLAA*L 152
Query: 502 TAGYSGKRSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWP 651
T G SG P TL SVA LL PL GVFPN SSYKN P VHQSTALP P
Sbjct: 151 TTGVSGNLRGCPTTLLSVAVLLAPLNGVFPNRSSYKNIP*VHQSTALP*P 2
>gb|DR060775.1|DR060775 RTNIT1_30_A04.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_30_A04_A029 3', mRNA sequence
Length = 785
Score = 198 bits (427), Expect = 4e-050
Identities = 79/91 (86%), Positives = 85/91 (93%)
Frame = -2 / -1
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
LIAEP+ ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFG+FL+EL+FGKTPFKGS NRA
Sbjct: 275 LIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELIFGKTPFKGSGNRA 96
Query: 554 TLFNVIGQQLRFPEYPAVSFSARDLIRGLLV 462
TLFNV+GQ LRFPE P SF+ARDLIRGLLV
Sbjct: 95 TLFNVVGQPLRFPESPTASFAARDLIRGLLV 3
Score = 141 bits (303), Expect = 4e-033
Identities = 63/92 (68%), Positives = 71/92 (77%)
Frame = +1 / +1
Query: 460 FTSRPLIRSLAEKLTAGYSGKRSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTA 639
FTS+PLI+SLA KL G SG P TL VARL DPL GVFP SS +N PKVHQSTA
Sbjct: 1 FTSKPLIKSLAAKLAVGDSGNLRGCPTTLKRVARLPDPLNGVFPKISSCRNIPKVHQSTA 180
Query: 640 LPWPSPLMISGARYSCVPTNDIDRASLGSAMS 735
LP PSPL+ISGA+YS VPTND++RA +GSAMS
Sbjct: 181 LPCPSPLIISGAKYSWVPTNDMERALVGSAMS 276
>gb|CF401310.1|CF401310 RTWW1_11_E11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_11_E11_A015 5', mRNA sequence
Length = 783
Score = 140 bits (300), Expect(2) = 5e-050
Identities = 53/73 (72%), Positives = 63/73 (86%)
Frame = -2 / +1
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
LIAEP++ARS SFVGTHEYLAPE+I G+GHGSAVDWWT GVFLYE+LFG+TPFKG+ +
Sbjct: 346 LIAEPTEARSRSFVGTHEYLAPEVISGKGHGSAVDWWTLGVFLYEMLFGRTPFKGAGKDS 525
Query: 554 TLFNVIGQQLRFP 516
TL N+I L+FP
Sbjct: 526 TLTNIITHPLKFP 564
Score = 91.8 bits (194), Expect(2) = 1e-026
Identities = 42/74 (56%), Positives = 50/74 (67%)
Frame = +1 / -2
Query: 514 SGKRSCWPMTLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGARYSCVP 693
+G + W M SV PL GV P S S + TP+VHQSTALP P P M SGARYS VP
Sbjct: 566 TGNFNGWVMIFVSVESFPAPLNGVRPKSIS*RKTPRVHQSTALP*PLPEMTSGARYSWVP 387
Query: 694 TNDIDRASLGSAMS 735
T D+DRAS+GSA++
Sbjct: 386 TKDLDRASVGSAIN 345
Score = 78.0 bits (164), Expect(2) = 5e-050
Identities = 30/49 (61%), Positives = 39/49 (79%)
Frame = -2 / +1
Query: 494 SARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEV 348
+ARDLI+ LLVK+P++RL RGA +IK+HPFF+ +NWALIR PP V
Sbjct: 625 AARDLIKRLLVKDPRRRLGSARGAADIKKHPFFKNINWALIRSVPPPGV 771
Score = 48.3 bits (99), Expect(2) = 1e-026
Identities = 26/48 (54%), Positives = 26/48 (54%)
Frame = +1 / -2
Query: 349 TSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLA 492
T GG MSAQ KKGC LIS APR R GSFT IRS A
Sbjct: 770 TPGGGTERMSAQLMFLKKGCFLISAAPRAEPRRLLGSFTRSRFIRSRA 627
>gb|DR058833.1|DR058833 RTNIT1_14_E01.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_14_E01_A029 3', mRNA sequence
Length = 647
Score = 196 bits (422), Expect = 2e-049
Identities = 77/95 (81%), Positives = 85/95 (89%)
Frame = -2 / +3
Query: 611 FLYELLFGKTPFKGSSNRATLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYK 432
+ Y GKTPFKGS NRATLFNV+GQ LRFPE P VSF+ARDLIRGLLVKEPQ RLAYK
Sbjct: 12 YFYMTSVGKTPFKGSGNRATLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYK 191
Query: 431 RGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIE 327
RGATEIKQHPFFEGVNWALIRCA+PPE+PKP++I+
Sbjct: 192 RGATEIKQHPFFEGVNWALIRCATPPEIPKPIDID 296
Score = 150 bits (323), Expect = 8e-036
Identities = 66/92 (71%), Positives = 73/92 (79%)
Frame = +1 / -2
Query: 316 FDGLSISTGFGTSGGLAHLMSAQFTPSKKGCCLISVAPRL*ASRCWGSFTSRPLIRSLAE 495
F S+S GFG SGG+AH + AQFTPSKKGCCLISVAPRL A+RC GSFTS+PLI+SLA
Sbjct: 307 FPNKSMSIGFGISGGVAHRIRAQFTPSKKGCCLISVAPRLYANRCCGSFTSKPLIKSLAA 128
Query: 496 KLTAGYSGKRSCWPMTLNSVARLLDPLKGVFP 591
KLT G SG P TLNSVARL +PLKGVFP
Sbjct: 127 KLTVGDSGNLRGCPTTLNSVARLPEPLKGVFP 32
>gb|DR058919.1|DR058919 RTNIT1_14_E01.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_14_E01_A029 5', mRNA sequence
Length = 587
Score = 155 bits (332), Expect = 4e-037
Identities = 61/65 (93%), Positives = 63/65 (96%)
Frame = -2 / +2
Query: 734 LIAEPSDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRA 555
LIAEP+ ARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFG+FLYELLFGKTPFKGS NRA
Sbjct: 392 LIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRA 571
Query: 554 TLFNV 540
TLFNV
Sbjct: 572 TLFNV 586
Score = 121 bits (258), Expect = 7e-027
Identities = 51/65 (78%), Positives = 58/65 (89%)
Frame = +1 / -3
Query: 541 TLNSVARLLDPLKGVFPNSSSYKNTPKVHQSTALPWPSPLMISGARYSCVPTNDIDRASL 720
TLNSVARL +PLKGVFPN SSY+N P VHQSTALP PSPL+ISGARYS VPTND++RA +
Sbjct: 585 TLNSVARLPEPLKGVFPNRSSYRNIPNVHQSTALP*PSPLIISGARYSWVPTNDMERALV 406
Query: 721 GSAMS 735
GSA+S
Sbjct: 405 GSAIS 391
>gb|CF398598.1|CF398598 RTDS3_13_D12.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_13_D12_A022 3', mRNA sequence
Length = 722
Score = 154 bits (331), Expect = 6e-037
Identities = 59/88 (67%), Positives = 74/88 (84%)
Frame = -2 / +3
Query: 578 FKGSSNRATLFNVIGQQLRFPEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPF 399
FKG+SNR TL NV+GQ L+FP+ P VSF+ARDLIRGLLVK+PQ R+ +KRGATEIKQHPF
Sbjct: 3 FKGASNRETLENVVGQPLKFPDSPTVSFAARDLIRGLLVKDPQHRIGFKRGATEIKQHPF 182
Query: 398 FEGVNWALIRCASPPEVPKPVEIERPSN 315
F+ NWALIR +PP++PKPV++ +N
Sbjct: 183 FDSANWALIRSTTPPQIPKPVDLSFLTN 266
>gb|DR049993.1|DR049993 RTBOR1_20_C02.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_20_C02_A029 5', mRNA sequence
Length = 851
Score = 104 bits (221), Expect(2) = 4e-035
Identities = 36/61 (59%), Positives = 50/61 (81%)
Frame = -2 / -3
Query: 710 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVIGQ 531
+S SFVGT EY+APEI+ G+GHG AVDWW FG+ LYE+++GKTPFKG + + T +N++ Q
Sbjct: 585 QSHSFVGTEEYVAPEILWGKGHGVAVDWWAFGILLYEMVYGKTPFKGCTRKETFYNIMCQ 406
Query: 530 Q 528
+
Sbjct: 405 E 403
Score = 64.3 bits (134), Expect(2) = 4e-035
Identities = 28/60 (46%), Positives = 33/60 (55%)
Frame = -2 / -3
Query: 518 PEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKP 339
P+ S +DL+R LLVKEP RL + GA EIK H FFEGV W + S P P
Sbjct: 399 PQLSEPSSPLKDLLRALLVKEPTLRLGFNSGAQEIKNHKFFEGVRWDELEFVSRPPFVPP 220
>gb|CF395349.1|CF395349 RTDS2_11_A05.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_11_A05_A021 3', mRNA sequence
Length = 508
Score = 99.6 bits (211), Expect(2) = 2e-033
Identities = 35/58 (60%), Positives = 47/58 (81%)
Frame = -2 / +1
Query: 710 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVI 537
+S SFVGT EY+APEI+ G+GHG AVDWW FG+ LYE++ GKTPFKG + + T +N++
Sbjct: 31 QSHSFVGTEEYVAPEILWGKGHGIAVDWWAFGILLYEMVNGKTPFKGLTRKETFYNIL 204
Score = 63.4 bits (132), Expect(2) = 2e-033
Identities = 28/55 (50%), Positives = 33/55 (60%)
Frame = -2 / +1
Query: 518 PEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPP 354
P+ S +DL+R LLVKEP RL +K GA EIK H FFEGV W + S P
Sbjct: 217 PQLSQPSSPLQDLLRCLLVKEPSLRLGFKCGAQEIKNHEFFEGVRWDELEYVSRP 381
>gb|BE496448.1|BE496448 NXCI_018_C03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_018_C03 5' similar to Arabidopsis
thaliana sequence At5g03640 protein kinase -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 523
Score = 101 bits (216), Expect(2) = 5e-031
Identities = 38/57 (66%), Positives = 46/57 (80%)
Frame = -2 / +2
Query: 509 PAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKP 339
P S +A+DLIRGLLVK+P +R+A RGA EIKQHPFF G+NWALIRC+ PP +P P
Sbjct: 137 PGPSAAAKDLIRGLLVKDPAKRMASARGAAEIKQHPFFRGINWALIRCSIPPHIPSP 307
Score = 52.8 bits (109), Expect(2) = 5e-031
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = -2 / +2
Query: 614 VFLYELLFGKTPFKGSSNRATLFNVIGQQLRFPE 513
+F++ELL+G+TPF+G N TL NV+ Q L FP+
Sbjct: 2 IFIFELLYGRTPFRGPDNDRTLANVVAQALHFPD 103
>gb|DR058015.1|DR058015 RTNIT1_9_D10.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_9_D10_A029 3', mRNA sequence
Length = 518
Score = 84.9 bits (179), Expect(2) = 7e-029
Identities = 30/52 (57%), Positives = 41/52 (78%)
Frame = -2 / +3
Query: 692 GTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVI 537
GT EY+APEI+ G+GHG AVD W FG+ LYE++ GKTPFKG + + T +N++
Sbjct: 3 GTEEYVAPEILWGKGHGIAVD*WAFGILLYEMVDGKTPFKGLTRKETFYNIL 158
Score = 62.5 bits (130), Expect(2) = 7e-029
Identities = 28/55 (50%), Positives = 33/55 (60%)
Frame = -2 / +2
Query: 518 PEYPAVSFSARDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPP 354
P+ S +DL+R LLVKEP RL +K GA EIK H FFEGV W + S P
Sbjct: 242 PQLSQPSSPFQDLLRCLLVKEPTLRLGFKCGAQEIKNHEFFEGVRWDELEYVSRP 406
>gb|CO172421.1|CO172421 NDL1_29_D06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_29_D06_A029 5', mRNA sequence
Length = 841
Score = 90.4 bits (191), Expect(2) = 1e-028
Identities = 31/58 (53%), Positives = 44/58 (75%)
Frame = -2 / +3
Query: 710 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVI 537
+S SFVGT EY+APE++ GH VDWW+ G+ +YE+ +GKTPF+GSS + T FN++
Sbjct: 189 KSHSFVGTVEYIAPEVLWCTGHSFPVDWWSLGILMYEMKYGKTPFRGSSRKETFFNIM 362
Score = 56.1 bits (116), Expect(2) = 1e-028
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = -2 / +3
Query: 488 RDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNW 381
+DLI+ LLVK+P +RL + GAT++K H FF G+ W
Sbjct: 402 KDLIKKLLVKDPSKRLGFSMGATDVKNHSFFHGLRW 509
>gb|CO172345.1|CO172345 NDL1_29_D06.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_29_D06_A029 3', mRNA sequence
Length = 759
Score = 90.4 bits (191), Expect(2) = 1e-028
Identities = 31/58 (53%), Positives = 44/58 (75%)
Frame = -2 / +2
Query: 710 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVI 537
+S SFVGT EY+APE++ GH VDWW+ G+ +YE+ +GKTPF+GSS + T FN++
Sbjct: 35 KSHSFVGTVEYIAPEVLWCTGHSFPVDWWSLGILMYEMKYGKTPFRGSSRKETFFNIM 208
Score = 56.1 bits (116), Expect(2) = 1e-028
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = -2 / +2
Query: 488 RDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNW 381
+DLI+ LLVK+P +RL + GAT++K H FF G+ W
Sbjct: 248 KDLIKKLLVKDPSKRLGFSMGATDVKNHSFFHGLRW 355
>gb|DR049315.1|DR049315 RTBOR1_15_H05.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_15_H05_A029 3', mRNA sequence
Length = 675
Score = 95.9 bits (203), Expect(2) = 9e-028
Identities = 34/61 (55%), Positives = 44/61 (72%)
Frame = -2 / +3
Query: 719 SDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNV 540
S RS SFVGT EY+APEI+ G GH + DWW+ G+ LYE+L+GKTPF+GS R T +
Sbjct: 81 SSGRSNSFVGTEEYVAPEIVSGSGHEFSADWWSLGILLYEMLYGKTPFRGSDKRETYRRI 260
Query: 539 I 537
+
Sbjct: 261 L 263
Score = 47.8 bits (98), Expect(2) = 9e-028
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = -2 / +3
Query: 485 DLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPP 354
DLI LL K+P++RL + G++++K H FF G+ W I P
Sbjct: 306 DLILRLLEKDPRRRLGSRNGSSDVKDHGFFAGLRWDFIETLCRP 437
>gb|DR684550.1|DR684550 EST1074627 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAU02 3' end, mRNA sequence
Length = 855
Score = 104 bits (221), Expect(2) = 2e-026
Identities = 36/61 (59%), Positives = 50/61 (81%)
Frame = -2 / +3
Query: 710 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVIGQ 531
+S SFVGT EY+APEI+ G+GHG AVDWW FG+ LYE+++GKTPFKG + + T +N++ Q
Sbjct: 516 QSHSFVGTEEYVAPEILWGKGHGVAVDWWAFGILLYEMVYGKTPFKGCTRKETFYNIMCQ 695
Query: 530 Q 528
+
Sbjct: 696 E 698
Score = 35.0 bits (70), Expect(2) = 2e-026
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2 / +3
Query: 518 PEYPAVSFSARDLIRGLLVKEPQQRLAYKRGA 423
P+ S +DL+R LLVKEP RL + GA
Sbjct: 702 PQLSEPSSPLKDLLRALLVKEPTLRLGFNSGA 797
>gb|AW011438.1|AW011438 ST20G06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST20G06, mRNA sequence
Length = 601
Score = 79.4 bits (167), Expect(2) = 3e-025
Identities = 26/52 (50%), Positives = 38/52 (73%)
Frame = -2 / +3
Query: 692 GTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVI 537
GT Y+APE++ GH VDWW+ G+ +YE+ +GKTPF+GSS + T FN++
Sbjct: 6 GTVXYIAPEVLWCTGHSFPVDWWSLGILMYEMKYGKTPFRGSSRKETFFNIM 161
Score = 56.1 bits (116), Expect(2) = 3e-025
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = -2 / +3
Query: 488 RDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNW 381
+DLI+ LLVK+P +RL + GAT++K H FF G+ W
Sbjct: 201 KDLIKKLLVKDPSKRLGFSMGATDVKNHSFFHGLRW 308
>gb|CO196899.1|CO196899 GEO1_2_A08.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_2_A08_A029 5', mRNA sequence
Length = 730
Score = 103 bits (219), Expect(2) = 9e-025
Identities = 37/64 (57%), Positives = 50/64 (78%)
Frame = -2 / +3
Query: 710 RSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVIGQ 531
RS S VGT EY+APE++KG GH AVDWW GV LYE+L+GKTPFKG++ + T +N++ +
Sbjct: 372 RSYSLVGTEEYVAPEMLKGMGHDFAVDWWALGVLLYEMLYGKTPFKGATRKETFYNILMK 551
Query: 530 QLRF 519
Q +F
Sbjct: 552 QPQF 563
Score = 30.4 bits (60), Expect(2) = 9e-025
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2 / +3
Query: 479 IRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPP 354
+R L+++ ++ + + IK H FF+ +NW I+ S P
Sbjct: 582 LRDLIIRLLEKEPSKRPSVDGIKNHSFFKELNWDTIQYISRP 707
>gb|DR049307.1|DR049307 RTBOR1_15_G04.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_15_G04_A029 3', mRNA sequence
Length = 611
Score = 83.5 bits (176), Expect(2) = 4e-024
Identities = 29/55 (52%), Positives = 39/55 (70%)
Frame = -2 / +1
Query: 701 SFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVI 537
S VGT EY+A EI+ G GH + DWW+ G+ LYE+L+GKTPF+GS R T ++
Sbjct: 34 SLVGTEEYVALEIVSGSGHEFSADWWSLGILLYEMLYGKTPFRGSDKRETYRRIL 198
Score = 47.8 bits (98), Expect(2) = 4e-024
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = -2 / +1
Query: 485 DLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPP 354
DLI LL K+P++RL + G++++K H FF G+ W I P
Sbjct: 241 DLILRLLEKDPRRRLGSRNGSSDVKDHGFFAGLRWDFIETLCRP 372
>gb|DR058708.1|DR058708 RTNIT1_13_A02.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_13_A02_A029 5', mRNA sequence
Length = 596
Score = 81.7 bits (172), Expect(2) = 2e-023
Identities = 27/51 (52%), Positives = 37/51 (72%)
Frame = -2 / -1
Query: 689 THEYLAPEIIKGEGHGSAVDWWTFGVFLYELLFGKTPFKGSSNRATLFNVI 537
T EY+APEI+ G GH + DWW+ G+ LYE+L+GKTPF+GS R T ++
Sbjct: 596 TEEYVAPEIVSGSGHEFSADWWSLGILLYEMLYGKTPFRGSDKRETYRRIL 444
Score = 47.8 bits (98), Expect(2) = 2e-023
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = -2 / -1
Query: 485 DLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCASPP 354
DLI LL K+P++RL + G++++K H FF G+ W I P
Sbjct: 401 DLILRLLEKDPRRRLGSRNGSSDVKDHGFFAGLRWDFIETLCRP 270
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 403,746,427
Number of Sequences: 355925
Number of extensions: 6072456
Number of successful extensions: 61316
Number of sequences better than 1.0e-020: 33
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10352187840
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)